RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7366
(566 letters)
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 321 bits (825), Expect = e-107
Identities = 117/223 (52%), Positives = 151/223 (67%), Gaps = 3/223 (1%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L ++ L K Y KGTKPAV+ +S V +GE FGLLG NGAGKTTT KMLTG ++PTSG
Sbjct: 1 LQIRNLTKTY--KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGT 58
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
AY+ +SIR R +GYCPQFDAL D LT REHL FY+R++ +P + V L
Sbjct: 59 AYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLL 118
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
L +++ RTLSGG KRKLS AIAL+G P ++ LDEPTSG+DP +RR +W I
Sbjct: 119 RVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178
Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
V +GR +ILT+H+M+E EALC ++ IM +G+ C+GS LK
Sbjct: 179 -VRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
Score = 216 bits (553), Expect = 4e-67
Identities = 74/152 (48%), Positives = 99/152 (65%), Gaps = 1/152 (0%)
Query: 27 IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 86
+GYCPQFDAL D LT REHL FY+R++ +P + V L L +++
Sbjct: 70 RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK 129
Query: 87 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 146
RTLSGG KRKLS AIAL+G P ++ LDEPTSG+DP +RR +W I V +GR +ILT
Sbjct: 130 RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE-VRKGRSIILT 188
Query: 147 SHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178
+H+M+E EALC ++ IM +G+ C+GS LK
Sbjct: 189 THSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 323 bits (830), Expect = 4e-97
Identities = 155/299 (51%), Positives = 200/299 (66%), Gaps = 7/299 (2%)
Query: 270 AVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPV--PVSLEEDDVR 327
+ N + W +IGKNL MA G +Y + L I++ F +R P P+ E+DDV
Sbjct: 1866 SANPFQWDLIGKNLVAMAVEGVVYFLLTLLIQHHFF---LSRWIAEPAKEPIFDEDDDVA 1922
Query: 328 KERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTT 387
+ER+R+ G + D+L + L K+Y+ + + PAV+++ GV GECFGLLG+NGAGKTT
Sbjct: 1923 EERQRIISGGNKTDILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTT 1980
Query: 388 TFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR 447
TFKMLTG TSG+A V SI ++ V +GYCPQFDA++D LT REHL Y+R+R
Sbjct: 1981 TFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR 2040
Query: 448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 507
VP+ + + N S+ L Y+DR T SGGNKRKLSTAIAL+G PPL+ LDEPT+G
Sbjct: 2041 GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTG 2100
Query: 508 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
MDP ARR LW I + EGR V+LTSH+MEECEALCT+L IMV G F CLG+ HLKS
Sbjct: 2101 MDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKS 2159
Score = 204 bits (521), Expect = 2e-56
Identities = 91/147 (61%), Positives = 109/147 (74%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
+GYCPQFDA++D LT REHL Y+R+R VP+ + + N S+ L Y+DR T SG
Sbjct: 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSG 2073
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 153
GNKRKLSTAIAL+G PPL+ LDEPT+GMDP ARR LW I + EGR V+LTSH+MEEC
Sbjct: 2074 GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEEC 2133
Query: 154 EALCTKLTIMVNGQFTCLGSATHLKSK 180
EALCT+L IMV G F CLG+ HLKSK
Sbjct: 2134 EALCTRLAIMVKGAFQCLGTIQHLKSK 2160
Score = 157 bits (398), Expect = 2e-40
Identities = 84/222 (37%), Positives = 128/222 (57%), Gaps = 3/222 (1%)
Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
VK L KI+ S +PAV++++ + LG NGAGKTTT +LTG + PTSG
Sbjct: 931 VKNLVKIFEPSG--RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVL 988
Query: 405 VMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 464
V I ++D VR +G CPQ + L LT EH+ FY++++ + L
Sbjct: 989 VGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLED 1048
Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
L H + E + LSGG +RKLS AIA +G+ ++ LDEPTSG+DP +RR +W + +
Sbjct: 1049 TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR 1108
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
S GR +I+++H+M+E + L ++ I+ G+ C G+ LK+
Sbjct: 1109 S-GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149
Score = 107 bits (268), Expect = 5e-24
Identities = 63/181 (34%), Positives = 100/181 (55%), Gaps = 7/181 (3%)
Query: 5 TTPKRVVTLLL--TTQKVPGSNPTIDKNLSYI----GYCPQFDALNDRLTPREHLEFYSR 58
TT ++T LL T+ V I+ NL + G CPQ + L LT EH+ FY++
Sbjct: 970 TTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQ 1029
Query: 59 VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 118
++ + L L H + E + LSGG +RKLS AIA +G+ ++ LDEPT
Sbjct: 1030 LKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPT 1089
Query: 119 SGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178
SG+DP +RR +W + + S GR +I+++H+M+E + L ++ I+ G+ C G+ LK
Sbjct: 1090 SGVDPYSRRSIWDLLLKYRS-GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLK 1148
Query: 179 S 179
+
Sbjct: 1149 N 1149
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 246 bits (629), Expect = 2e-77
Identities = 96/226 (42%), Positives = 137/226 (60%), Gaps = 4/226 (1%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
V+ V+ L K Y G K A++ +SF V GE FGLLG NGAGKTT K+L G +KPTSG
Sbjct: 4 VIEVRNLTKKY---GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60
Query: 402 NAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
V+ + + VR IGY PQ +L LT RE+LEF++R+ + + E
Sbjct: 61 EILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL 120
Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
L F L ++++VRTLSGG K++LS A+ALL +P L+ LDEPTSG+DP +RR +W +
Sbjct: 121 LELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLR 180
Query: 522 RAVSEGRC-VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
EG ++L++H +EE E LC ++ I+ +G+ G+ LK
Sbjct: 181 ELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226
Score = 161 bits (410), Expect = 2e-45
Identities = 70/183 (38%), Positives = 104/183 (56%), Gaps = 6/183 (3%)
Query: 4 TTTPKRVVTLLLTTQ---KVPGSNPTID--KNLSYIGYCPQFDALNDRLTPREHLEFYSR 58
TT K + LL T V G + + K IGY PQ +L LT RE+LEF++R
Sbjct: 45 TTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFAR 104
Query: 59 VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 118
+ + + E L F L ++++VRTLSGG K++LS A+ALL +P L+ LDEPT
Sbjct: 105 LYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT 164
Query: 119 SGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
SG+DP +RR +W + EG ++L++H +EE E LC ++ I+ +G+ G+ L
Sbjct: 165 SGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL 224
Query: 178 KSK 180
K K
Sbjct: 225 KEK 227
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 212 bits (542), Expect = 4e-66
Identities = 79/213 (37%), Positives = 114/213 (53%), Gaps = 40/213 (18%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ V+ L K Y G K A++ IS V +GE +GLLG NGAGKTT K++ G +KP SG
Sbjct: 1 IEVRNLSKRY----GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE 56
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
V+ I+ + V+ IGY P+ +L + LT RE+L+
Sbjct: 57 IKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------- 95
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
LSGG K++L+ A ALL +P L+ LDEPTSG+DP +RR W +
Sbjct: 96 ---------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRE 140
Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 555
EG+ ++L+SH +EE E LC ++ I+ NG+
Sbjct: 141 LKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
Score = 122 bits (308), Expect = 2e-32
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 41/172 (23%)
Query: 2 GLTTTPKRVVTLLLTTQ---KVPGSNPTID--KNLSYIGYCPQFDALNDRLTPREHLEFY 56
G TT K ++ LL KV G + + + IGY P+ +L + LT RE+L+
Sbjct: 38 GKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK-- 95
Query: 57 SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDE 116
LSGG K++L+ A ALL +P L+ LDE
Sbjct: 96 ----------------------------------LSGGMKQRLALAQALLHDPELLILDE 121
Query: 117 PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 168
PTSG+DP +RR W + EG+ ++L+SH +EE E LC ++ I+ NG+
Sbjct: 122 PTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 204 bits (521), Expect = 2e-62
Identities = 95/224 (42%), Positives = 130/224 (58%), Gaps = 5/224 (2%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ V+ L K Y G AV +SF V RGE FGLLG NGAGKTTT KMLT +KPTSG
Sbjct: 1 IEVENLVKKY----GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGR 56
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
A V H + VR IG Q +++D LT E+L ++R+ VP ++E L
Sbjct: 57 ATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELL 116
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
+ L +DR V+T SGG +R+L A +L+ P ++FLDEPT G+DP R +W IE+
Sbjct: 117 DFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEK 176
Query: 523 AVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
E G ++LT+H MEE E LC ++ I+ +G+ G+ LK
Sbjct: 177 LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
Score = 129 bits (326), Expect = 2e-34
Identities = 66/183 (36%), Positives = 100/183 (54%), Gaps = 6/183 (3%)
Query: 2 GLTTTPKRVVTLLLTTQ---KVPGSNPTID--KNLSYIGYCPQFDALNDRLTPREHLEFY 56
G TTT K + TLL T V G + + + IG Q +++D LT E+L +
Sbjct: 38 GKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIH 97
Query: 57 SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDE 116
+R+ VP ++E L+ L +DR V+T SGG +R+L A +L+ P ++FLDE
Sbjct: 98 ARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157
Query: 117 PTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 175
PT G+DP R +W IE+ E G ++LT+H MEE E LC ++ I+ +G+ G+
Sbjct: 158 PTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPE 217
Query: 176 HLK 178
LK
Sbjct: 218 ELK 220
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 196 bits (500), Expect = 3e-58
Identities = 87/210 (41%), Positives = 123/210 (58%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G AV+ ++F V GE FG LG NGAGKTTT +MLT ++PTSG A V + +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK 63
Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
VR IG PQ+ ++++ LT RE+LE R+ +P E L F LG +DR V
Sbjct: 64 VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG 123
Query: 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 536
T SGG +R+L A +L+ P ++FLDEPT+G+DP RR +W I EG ++LT+H
Sbjct: 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY 183
Query: 537 MEECEALCTKLTIMVNGQFTCLGSATHLKS 566
MEE + LC ++ I+ +G+ G+ LK
Sbjct: 184 MEEADKLCDRIAIIDHGRIIAEGTPEELKR 213
Score = 130 bits (329), Expect = 6e-34
Identities = 69/186 (37%), Positives = 101/186 (54%), Gaps = 9/186 (4%)
Query: 2 GLTTTPKRVVTLLLTTQ---KVPG----SNPTIDKNLSYIGYCPQFDALNDRLTPREHLE 54
G TTT + + TLL T +V G P K IG PQ+ ++++ LT RE+LE
Sbjct: 31 GKTTTIRMLTTLLRPTSGTARVAGYDVVREP--RKVRRSIGIVPQYASVDEDLTGRENLE 88
Query: 55 FYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL 114
R+ +P E L F LG +DR V T SGG +R+L A +L+ P ++FL
Sbjct: 89 MMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFL 148
Query: 115 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 174
DEPT+G+DP RR +W I EG ++LT+H MEE + LC ++ I+ +G+ G+
Sbjct: 149 DEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTP 208
Query: 175 THLKSK 180
LK +
Sbjct: 209 EELKRR 214
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 164 bits (417), Expect = 2e-47
Identities = 71/212 (33%), Positives = 114/212 (53%), Gaps = 7/212 (3%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L V+ + K + G A++ ISF V +GE FGLLG NGAGKTTT +M+ G I P SG
Sbjct: 1 LEVENVTKRF----GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE 56
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
+ + R+ IGY P+ L ++ + L + ++++ + ++E L
Sbjct: 57 VLFDGKPLDIA---ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWL 113
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
+ L Y+++ V LS GN++K+ A++ +P L+ LDEP SG+DP L I
Sbjct: 114 ERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRE 173
Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
G+ VIL++H ME E LC ++ ++ G+
Sbjct: 174 LARAGKTVILSTHQMELVEELCDRVLLLNKGR 205
Score = 100 bits (251), Expect = 3e-24
Identities = 40/134 (29%), Positives = 72/134 (53%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
IGY P+ L ++ + L + ++++ + ++E L + L Y+++ V LS
Sbjct: 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSK 131
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 153
GN++K+ A++ +P L+ LDEP SG+DP L I G+ VIL++H ME
Sbjct: 132 GNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELV 191
Query: 154 EALCTKLTIMVNGQ 167
E LC ++ ++ G+
Sbjct: 192 EELCDRVLLLNKGR 205
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 163 bits (414), Expect = 5e-47
Identities = 72/215 (33%), Positives = 121/215 (56%), Gaps = 8/215 (3%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L ++ L K Y + A++ +S +G G +GLLG NGAGKTT ++L P+SG
Sbjct: 1 LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGT 55
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
+ + +R IGY PQ + T RE L++ + ++ +PS + V+E L
Sbjct: 56 IRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIE 521
LG + +++ +LSGG +R++ A AL+G+P ++ +DEPT+G+DP R RF E
Sbjct: 116 ELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE 175
Query: 522 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT 556
+ E R VIL++H +E+ E+LC ++ ++ G+
Sbjct: 176 --LGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
Score = 108 bits (271), Expect = 7e-27
Identities = 48/137 (35%), Positives = 83/137 (60%), Gaps = 3/137 (2%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
IGY PQ + T RE L++ + ++ +PS + V+E L LG + +++ +LSG
Sbjct: 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSG 133
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVILTSHNMEE 152
G +R++ A AL+G+P ++ +DEPT+G+DP R RF E + E R VIL++H +E+
Sbjct: 134 GMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE--LGEDRIVILSTHIVED 191
Query: 153 CEALCTKLTIMVNGQFT 169
E+LC ++ ++ G+
Sbjct: 192 VESLCNQVAVLNKGKLV 208
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 166 bits (423), Expect = 7e-47
Identities = 83/200 (41%), Positives = 119/200 (59%), Gaps = 2/200 (1%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
S G K VN +SF V GECFGLLG NGAGK+T +M+ G P +G V+ +
Sbjct: 50 SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA 109
Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDR 473
L R+ IG PQFD L+ T RE+L + R + + + ++ SL +FA L +D
Sbjct: 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-PSLLEFARLESKADA 168
Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533
V LSGG KR+L+ A AL+ +P L+ LDEPT+G+DP AR +W + ++ G+ ++LT
Sbjct: 169 RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 228
Query: 534 SHNMEECEALCTKLTIMVNG 553
+H MEE E LC +L ++ G
Sbjct: 229 THFMEEAERLCDRLCVLEAG 248
Score = 105 bits (264), Expect = 7e-25
Identities = 68/191 (35%), Positives = 103/191 (53%), Gaps = 13/191 (6%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRTLS 92
IG PQFD L+ T RE+L + R + + + ++ SL +FA L +D V LS
Sbjct: 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-PSLLEFARLESKADARVSDLS 174
Query: 93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 152
GG KR+L+ A AL+ +P L+ LDEPT+G+DP AR +W + ++ G+ ++LT+H MEE
Sbjct: 175 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 234
Query: 153 CEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSGSG 212
E LC +L ++ G+ G L + + V ++ GDP ELS +
Sbjct: 235 AERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVI--EIYGGDP--HELSSLVKP----- 285
Query: 213 IRNSARPEVSG 223
+ R EVSG
Sbjct: 286 --YARRIEVSG 294
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 162 bits (412), Expect = 1e-46
Identities = 74/211 (35%), Positives = 118/211 (55%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ L K + + K T AV+ +SF V GE GLLG NGAGKTTT +ML G ++P +G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
A V + R +G+ L DRLT RE+LE+++ + + L + E
Sbjct: 62 ATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELA 121
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
++ + DR V S G ++K++ A AL+ +PP++ LDEPT+G+D A R L I +
Sbjct: 122 DRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQ 181
Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNG 553
+ G+C++ ++H M+E E LC ++ ++ G
Sbjct: 182 LRALGKCILFSTHIMQEVERLCDRVVVLHRG 212
Score = 101 bits (253), Expect = 2e-24
Identities = 43/133 (32%), Positives = 77/133 (57%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
+G+ L DRLT RE+LE+++ + + L + E ++ + DR V S
Sbjct: 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFST 139
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 153
G ++K++ A AL+ +PP++ LDEPT+G+D A R L I + + G+C++ ++H M+E
Sbjct: 140 GMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEV 199
Query: 154 EALCTKLTIMVNG 166
E LC ++ ++ G
Sbjct: 200 ERLCDRVVVLHRG 212
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 162 bits (411), Expect = 2e-45
Identities = 81/199 (40%), Positives = 119/199 (59%), Gaps = 2/199 (1%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G K V+ +SF V RGECFGLLG NGAGKTTT +ML G P +G+ + +
Sbjct: 18 GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARH 77
Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREV 475
R +G PQFD L+ T RE+L + R + + +V L +FA L + +D +V
Sbjct: 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALV-PPLLEFAKLENKADAKV 136
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
LSGG KR+L+ A AL+ +P ++ LDEPT+G+DP AR +W + ++ G+ ++LT+H
Sbjct: 137 GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
Query: 536 NMEECEALCTKLTIMVNGQ 554
MEE E LC +L ++ G+
Sbjct: 197 FMEEAERLCDRLCVIEEGR 215
Score = 105 bits (264), Expect = 4e-25
Identities = 66/213 (30%), Positives = 109/213 (51%), Gaps = 19/213 (8%)
Query: 2 GLTTTPKRVV--------TLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHL 53
G TTT + ++ ++ L + VP +G PQFD L+ T RE+L
Sbjct: 45 GKTTTLRMLLGLTHPDAGSISLCGEPVPSRAR---HARQRVGVVPQFDNLDPDFTVRENL 101
Query: 54 EFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI 112
+ R + + +V L +FA L + +D +V LSGG KR+L+ A AL+ +P ++
Sbjct: 102 LVFGRYFGLSAAAARALV-PPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVL 160
Query: 113 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 172
LDEPT+G+DP AR +W + ++ G+ ++LT+H MEE E LC +L ++ G+ G
Sbjct: 161 VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220
Query: 173 SATHLKSKSMA---LPVSGNDLGRGDPVRSELS 202
+ L + + + G D +R EL+
Sbjct: 221 APHALIESEIGCDVIEIYGPDP---VALRDELA 250
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 161 bits (408), Expect = 4e-45
Identities = 85/200 (42%), Positives = 120/200 (60%), Gaps = 2/200 (1%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
S G K VN +SF + RGECFGLLG NGAGK+T +ML G I P G V+ +
Sbjct: 13 SYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA 72
Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDR 473
L R IG PQFD L+ T RE+L + R + + + ++ SL +FA L +D
Sbjct: 73 RLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-PSLLEFARLESKADV 131
Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533
V LSGG KR+L+ A AL+ +P L+ LDEPT+G+DP AR +W + ++ G+ ++LT
Sbjct: 132 RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 191
Query: 534 SHNMEECEALCTKLTIMVNG 553
+H MEE E LC +L ++ +G
Sbjct: 192 THFMEEAERLCDRLCVLESG 211
Score = 103 bits (259), Expect = 1e-24
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 13/193 (6%)
Query: 32 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRT 90
IG PQFD L+ T RE+L + R + + + ++ SL +FA L +D V
Sbjct: 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-PSLLEFARLESKADVRVAL 135
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG KR+L+ A AL+ +P L+ LDEPT+G+DP AR +W + ++ G+ ++LT+H M
Sbjct: 136 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM 195
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRALNDGSG 210
EE E LC +L ++ +G+ G L + + V ++ GDP EL +
Sbjct: 196 EEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVI--EIYGGDP--DELRELIRP--- 248
Query: 211 SGIRNSARPEVSG 223
+ R EVSG
Sbjct: 249 ----YARRIEVSG 257
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 154 bits (390), Expect = 2e-42
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 3/198 (1%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G K AV+ ISF V GE FGLLG NGAGKTTTF+M+ G ++PT G + +
Sbjct: 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI-- 70
Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
++ IGY P+ L ++T + L++ + ++ +P + + L + + ++++
Sbjct: 71 -KNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIK 129
Query: 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 536
LS GN++K+ A++ P L+ LDEP SG+DP L I EG +I +SH
Sbjct: 130 ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR 189
Query: 537 MEECEALCTKLTIMVNGQ 554
ME E LC +L ++ GQ
Sbjct: 190 MEHVEELCDRLLMLKKGQ 207
Score = 96.3 bits (240), Expect = 5e-22
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 8/171 (4%)
Query: 2 GLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSY-----IGYCPQFDALNDRLTPREHLEFY 56
G TTT + ++ LL T+ G LS IGY P+ L ++T + L++
Sbjct: 40 GKTTTFRMILGLLEPTE---GEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYL 96
Query: 57 SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDE 116
+ ++ +P + + L + + ++++ LS GN++K+ A++ P L+ LDE
Sbjct: 97 AELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDE 156
Query: 117 PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
P SG+DP L I EG +I +SH ME E LC +L ++ GQ
Sbjct: 157 PFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQ 207
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 151 bits (384), Expect = 2e-42
Identities = 79/219 (36%), Positives = 113/219 (51%), Gaps = 3/219 (1%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
+L V L K Y AV +SF GE GLLG NGAGKTT +M+ + P SG
Sbjct: 1 MLEVTDLTKSY---GSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSG 57
Query: 402 NAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
+ VR IG L RLT RE+L++++R+ + + + E
Sbjct: 58 KVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAEL 117
Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
+ L Y DR V S G K+K++ A AL+ +P ++ LDEPTSG+D RR I+
Sbjct: 118 SKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIK 177
Query: 522 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
+ +EGR VI +SH M+E EALC ++ ++ G+ GS
Sbjct: 178 QLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGS 216
Score = 95.2 bits (237), Expect = 4e-22
Identities = 52/147 (35%), Positives = 82/147 (55%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
IG L RLT RE+L++++R+ + + + E + L Y DR V S
Sbjct: 77 IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFST 136
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 153
G K+K++ A AL+ +P ++ LDEPTSG+D RR I++ +EGR VI +SH M+E
Sbjct: 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV 196
Query: 154 EALCTKLTIMVNGQFTCLGSATHLKSK 180
EALC ++ ++ G+ GS L ++
Sbjct: 197 EALCDRVIVLHKGEVVLEGSIEALDAR 223
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 148 bits (375), Expect = 2e-41
Identities = 71/212 (33%), Positives = 111/212 (52%), Gaps = 9/212 (4%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L L K Y G K ++ IS V +GE +G LG NGAGKTTT K++ G IKP SG
Sbjct: 1 LKTNDLTKTY----GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGE 56
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
S + +++ IG + LT RE+L +R+ + ++E L
Sbjct: 57 ITFDGKSYQKNIE-ALRRIGALIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVL 111
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
+ L + ++V+ S G K++L A+ALLGNP L+ LDEPT+G+DP + L I
Sbjct: 112 DVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILS 171
Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
+G V+++SH + E + + ++ I+ G+
Sbjct: 172 LRDQGITVLISSHLLSEIQKVADRIGIINKGK 203
Score = 90.7 bits (226), Expect = 7e-21
Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 8/170 (4%)
Query: 2 GLTTTPKRVVTLLLTTQ---KVPGSNPTIDKN-LSYIGYCPQFDALNDRLTPREHLEFYS 57
G TTT K ++ L+ G + + L IG + LT RE+L +
Sbjct: 38 GKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLA 97
Query: 58 RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 117
R+ + ++E L+ L + ++V+ S G K++L A+ALLGNP L+ LDEP
Sbjct: 98 RLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEP 153
Query: 118 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
T+G+DP + L I +G V+++SH + E + + ++ I+ G+
Sbjct: 154 TNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGK 203
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 147 bits (373), Expect = 4e-41
Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 6/203 (2%)
Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SM 414
G +PA++ IS + +GE ++G NG+GK+T ++L G + PTSG V + S+
Sbjct: 11 DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL 70
Query: 415 DLVRSYIGYCPQF-DA--LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
+R +G Q D T E + F +P + V E+L L
Sbjct: 71 KELRRKVGLVFQNPDDQFFGP--TVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLR 128
Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 531
DR TLSGG K++++ A L +P ++ LDEPT+G+DP RR L +++ +EG+ +I
Sbjct: 129 DRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTII 188
Query: 532 LTSHNMEECEALCTKLTIMVNGQ 554
+ +H+++ L ++ ++ +G+
Sbjct: 189 IVTHDLDLLLELADRVIVLEDGK 211
Score = 100 bits (252), Expect = 3e-24
Identities = 36/121 (29%), Positives = 66/121 (54%)
Query: 47 LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 106
T E + F +P + V E+L L DR TLSGG K++++ A L
Sbjct: 91 PTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLA 150
Query: 107 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 166
+P ++ LDEPT+G+DP RR L +++ +EG+ +I+ +H+++ L ++ ++ +G
Sbjct: 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
Query: 167 Q 167
+
Sbjct: 211 K 211
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 147 bits (374), Expect = 3e-40
Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 5/223 (2%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ V L K+Y GT+ A++++SF +G G LG NGAGK+TT K++TG + P SG+
Sbjct: 3 IRVSSLTKLY----GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGS 58
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
V + + V+ IGY P+ + L + RE+L+F + + + LL V E +
Sbjct: 59 VQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMI 118
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
L +++ LS G ++++ A AL+ +P ++ LDEPT+G+DP + I +
Sbjct: 119 ELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVI-K 177
Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
+ + + +IL++H M+E EA+C ++ I+ G+ L
Sbjct: 178 NIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS 220
Score = 80.6 bits (199), Expect = 1e-16
Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 1/145 (0%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
IGY P+ + L + RE+L+F + + + LL V E + L +++ LS
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSK 136
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 153
G ++++ A AL+ +P ++ LDEPT+G+DP + I + + + + +IL++H M+E
Sbjct: 137 GYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVI-KNIGKDKTIILSTHIMQEV 195
Query: 154 EALCTKLTIMVNGQFTCLGSATHLK 178
EA+C ++ I+ G+ L
Sbjct: 196 EAICDRVIIINKGKIVADKKLDELS 220
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 137 bits (348), Expect = 3e-38
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 52/199 (26%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-RDSMD 415
G + A++ +S + GE L+G NG+GK+T + + G +KPTSG + I + ++
Sbjct: 10 GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLE 69
Query: 416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV 475
+R IGY PQ
Sbjct: 70 ELRRRIGYVPQ------------------------------------------------- 80
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
LSGG +++++ A ALL NP L+ LDEPTSG+DP +R L + EGR VI+ +H
Sbjct: 81 --LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTH 138
Query: 536 NMEECEALCTKLTIMVNGQ 554
+ E E ++ ++ +G+
Sbjct: 139 DPELAELAADRVIVLKDGK 157
Score = 91.5 bits (228), Expect = 1e-21
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++++ A ALL NP L+ LDEPTSG+DP +R L + EGR VI+ +H+
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 151 EECEALCTKLTIMVNGQ 167
E E ++ ++ +G+
Sbjct: 141 ELAELAADRVIVLKDGK 157
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 132 bits (335), Expect = 2e-35
Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 25/226 (11%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
++ + L Y G K A+ +S + +GE L+G NG+GK+T K+L G +KPTSG
Sbjct: 3 MIEAENLSFRY---PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG 59
Query: 402 NAYVMNHSIRDSMDL--VRSYIGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNT-- 456
V L +R +G Q P + L F V V L N
Sbjct: 60 EVLVDGLDTSSEKSLLELRQKVGLVFQN--------PDDQL-FGPTVEDEVAFGLENLGL 110
Query: 457 -------IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
V E+L L DR LSGG K++++ A L P ++ LDEPT+G+D
Sbjct: 111 PREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 510 PGARRFLWTCIER-AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
P RR L +++ G+ +I+ +H++E ++ ++ +G+
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGK 216
Score = 83.8 bits (208), Expect = 3e-18
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 129
V E+L L DR LSGG K++++ A L P ++ LDEPT+G+DP RR L
Sbjct: 118 RVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177
Query: 130 WTCIER-AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
+++ G+ +I+ +H++E ++ ++ +G+
Sbjct: 178 LELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGK 216
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 128 bits (324), Expect = 6e-34
Identities = 73/214 (34%), Positives = 110/214 (51%), Gaps = 6/214 (2%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L + L K Y G + VN +S V +GE GLLG NGAGKTTTF M+ G +KP SG
Sbjct: 1 LRAENLSKRY----GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK 56
Query: 403 AYVMNHSI-RDSMDL-VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE 460
+ I + M R IGY PQ ++ +LT E++ +R + + E
Sbjct: 57 ILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEE 116
Query: 461 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 520
L +F + H + +LSGG +R++ A AL NP + LDEP +G+DP A + + I
Sbjct: 117 LLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKII 176
Query: 521 ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
+ G V++T HN+ E ++ + I+ G+
Sbjct: 177 KILKDRGIGVLITDHNVRETLSITDRAYIIYEGK 210
Score = 68.3 bits (168), Expect = 5e-13
Identities = 40/134 (29%), Positives = 69/134 (51%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
IGY PQ ++ +LT E++ +R + + E L +F + H + +LSG
Sbjct: 77 IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSG 136
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 153
G +R++ A AL NP + LDEP +G+DP A + + I+ G V++T HN+ E
Sbjct: 137 GERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRET 196
Query: 154 EALCTKLTIMVNGQ 167
++ + I+ G+
Sbjct: 197 LSITDRAYIIYEGK 210
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 127 bits (320), Expect = 1e-33
Identities = 76/211 (36%), Positives = 114/211 (54%), Gaps = 11/211 (5%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L K L K + G + AVN IS V + +GLLG NGAGK+T KM+TG ++PTSG
Sbjct: 1 LETKNLSKRF----GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGE 56
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
H DL + IG + L + LT RE+L+ ++ + +P ++ ++E L
Sbjct: 57 IIFDGHPWTRK-DLHK--IGSLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVL 109
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
N L + ++ + S G K++L AIALL +P L+ LDEPT+G+DP + L I
Sbjct: 110 NIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRS 169
Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNG 553
+G VIL+SH + E + L + I+ G
Sbjct: 170 FPEQGITVILSSHILSEVQQLADHIGIISEG 200
Score = 75.9 bits (187), Expect = 1e-15
Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
Query: 29 KNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV 88
K+L IG + L + LT RE+L+ ++ + +P ++ ++E LN L + ++
Sbjct: 67 KDLHKIGSLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKA 122
Query: 89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
+ S G K++L AIALL +P L+ LDEPT+G+DP + L I +G VIL+SH
Sbjct: 123 KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH 182
Query: 149 NMEECEALCTKLTIMVNG 166
+ E + L + I+ G
Sbjct: 183 ILSEVQQLADHIGIISEG 200
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 126 bits (320), Expect = 2e-33
Identities = 75/224 (33%), Positives = 112/224 (50%), Gaps = 8/224 (3%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
LV + L K Y + VN +S V GE GLLG NGAGKTTTF M+ G ++P SG
Sbjct: 4 TLVAENLAKSY----KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59
Query: 402 NAYVMNHSI-RDSMDL-VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTI- 457
+ + I + M R IGY PQ ++ +LT +++ +R
Sbjct: 60 KILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEE 119
Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
++ L +F + H D + +LSGG +R++ A AL NP I LDEP +G+DP A +
Sbjct: 120 LDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQ 179
Query: 518 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 561
I+ G V++T HN+ E +C + I+ +G+ GS
Sbjct: 180 RIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSP 223
Score = 66.8 bits (164), Expect = 2e-12
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNV-PSVLLNTI-VNESLNKFALGHYSDREVRTL 91
IGY PQ ++ +LT +++ +R ++ L +F + H D + +L
Sbjct: 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSL 140
Query: 92 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
SGG +R++ A AL NP I LDEP +G+DP A + I+ G V++T HN+
Sbjct: 141 SGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR 200
Query: 152 ECEALCTKLTIMVNGQFTCLGSA 174
E +C + I+ +G+ GS
Sbjct: 201 ETLDICDRAYIISDGKVLAEGSP 223
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 126 bits (320), Expect = 3e-33
Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 22/211 (10%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-------RDS 413
A++ +SF V GE GL+G NGAGKTT F +++G ++PTSG+ I
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74
Query: 414 MDLVRSYIGYCPQFDALNDRLTPREHL---------EFYSRVRNVPSVL-LNTIVNESLN 463
+ + R++ Q L LT E++ R E L
Sbjct: 75 LGIGRTF-----QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLE 129
Query: 464 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 523
+ L +DR LS G +R+L A AL +P L+ LDEP +G++P L I
Sbjct: 130 RVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL 189
Query: 524 VSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
G V+L H+M+ +L ++T++ G+
Sbjct: 190 RERGITVLLVEHDMDVVMSLADRVTVLDQGR 220
Score = 79.8 bits (198), Expect = 8e-17
Identities = 31/97 (31%), Positives = 49/97 (50%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
E L + L +DR LS G +R+L A AL +P L+ LDEP +G++P L
Sbjct: 124 AEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA 183
Query: 131 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
I G V+L H+M+ +L ++T++ G+
Sbjct: 184 ELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGR 220
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 126 bits (320), Expect = 3e-33
Identities = 64/220 (29%), Positives = 105/220 (47%), Gaps = 29/220 (13%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G +P + IS V +GE L+G NGAGK+T K + G +KP+SG + +R
Sbjct: 15 GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRK--RR 72
Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT----------------IVNE 460
R IGY PQ +++ F V++V VLL V+E
Sbjct: 73 KRLRIGYVPQKSSVD--------RSFPITVKDV--VLLGRYGKKGWFRRLNKKDKEKVDE 122
Query: 461 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 520
+L + + DR++ LSGG K+++ A AL NP L+ LDEP +G+D ++ ++ +
Sbjct: 123 ALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLL 182
Query: 521 ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
+ EG+ V++ +H++ A + I +N G
Sbjct: 183 KELRQEGKTVLMVTHDLGLVMAYFDR-VICLNRHLIASGP 221
Score = 84.6 bits (210), Expect = 2e-18
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 27/171 (15%)
Query: 19 KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT--------- 69
K+ G + IGY PQ +++ F V++V VLL
Sbjct: 62 KIFGKPVRKRRKRLRIGYVPQKSSVD--------RSFPITVKDV--VLLGRYGKKGWFRR 111
Query: 70 -------IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
V+E+L + + DR++ LSGG K+++ A AL NP L+ LDEP +G+D
Sbjct: 112 LNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVD 171
Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
++ ++ ++ EG+ V++ +H++ A + I +N G
Sbjct: 172 VAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDR-VICLNRHLIASGP 221
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 127 bits (321), Expect = 3e-33
Identities = 65/218 (29%), Positives = 102/218 (46%), Gaps = 16/218 (7%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SM 414
G KP ++ +SF + +GE G+LG NG+GK+T K L G +KP SG + I
Sbjct: 13 GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPK 72
Query: 415 DLVRSYIGYCPQFDALNDRLTPRE--------HLEFYSRVRNVPSVLLNTIVNESLNKFA 466
+L + + Y PQ + LT E HL + R PS IV E+L
Sbjct: 73 ELAKK-LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGR----PSKEDEEIVEEALELLG 127
Query: 467 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVS 525
L H +DR V LSGG ++++ A AL P++ LDEPTS +D + + +
Sbjct: 128 LEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187
Query: 526 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH 563
+G V++ H++ L ++ +G+ G+
Sbjct: 188 KGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEE 225
Score = 74.9 bits (185), Expect = 5e-15
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 13/152 (8%)
Query: 34 IGYCPQFDALNDRLTPRE--------HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 85
+ Y PQ + LT E HL + R PS IV E+L L H +D
Sbjct: 78 LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGR----PSKEDEEIVEEALELLGLEHLAD 133
Query: 86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVI 144
R V LSGG ++++ A AL P++ LDEPTS +D + + + +G V+
Sbjct: 134 RPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVV 193
Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATH 176
+ H++ L ++ +G+ G+
Sbjct: 194 MVLHDLNLAARYADHLILLKDGKIVAQGTPEE 225
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 125 bits (317), Expect = 6e-33
Identities = 64/201 (31%), Positives = 102/201 (50%), Gaps = 5/201 (2%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L V L Y G + A++ +SF V G LLG NGAGK+T F +LT G
Sbjct: 2 LEVAGLSFRY----GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
V H +R + + +G Q L+ L+ R++L +++ + + + E L
Sbjct: 58 ISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELL 117
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
+ L +D +VR L+GG++R++ A ALL P L+ LDEPT G+DP +R + +
Sbjct: 118 ARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRA 177
Query: 523 -AVSEGRCVILTSHNMEECEA 542
A +G V+ +H ++E EA
Sbjct: 178 LARDQGLSVLWATHLVDEIEA 198
Score = 75.4 bits (186), Expect = 2e-15
Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 31 LSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRT 90
L+ +G Q L+ L+ R++L +++ + + + E L + L +D +VR
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVRE 132
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHN 149
L+GG++R++ A ALL P L+ LDEPT G+DP +R + + A +G V+ +H
Sbjct: 133 LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHL 192
Query: 150 MEECEA 155
++E EA
Sbjct: 193 VDEIEA 198
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 124 bits (313), Expect = 2e-32
Identities = 71/235 (30%), Positives = 109/235 (46%), Gaps = 7/235 (2%)
Query: 321 LEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGL 380
+E ++ K + + G + +K LFK A+ ISF + +GE G +G
Sbjct: 1 IEVSNLSKSYRV--YSKEPGLIGSLKSLFK---RKYREVEALKGISFTIEKGEIVGFIGP 55
Query: 381 NGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC-PQFDALNDRLTPREH 439
NGAGKTTT K+L+G ++PTSG V IG Q L L +
Sbjct: 56 NGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDS 115
Query: 440 LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI 499
+ + ++P ++E L D VR LS G + + A ALL P ++
Sbjct: 116 FYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEIL 175
Query: 500 FLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNG 553
FLDEPT G+D A+ + ++ E G V+LTSH M++ EAL ++ ++ G
Sbjct: 176 FLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKG 230
Score = 70.4 bits (173), Expect = 1e-13
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 47 LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 106
L + + + ++P ++E L D VR LS G + + A ALL
Sbjct: 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALL 169
Query: 107 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVN 165
P ++FLDEPT G+D A+ + ++ E G V+LTSH M++ EAL ++ ++
Sbjct: 170 HEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDK 229
Query: 166 G 166
G
Sbjct: 230 G 230
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 121 bits (306), Expect = 1e-31
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 13/210 (6%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G P + +SF V GE ++G NGAGK+T K + G +KPTSG+ V +
Sbjct: 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKE--- 66
Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI-------VNESLNKFALGH 469
R IGY PQ ++ DR P + L + V+E+L + L
Sbjct: 67 -RKRIGYVPQRRSI-DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE 124
Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
+DR++ LSGG ++++ A AL+ +P L+ LDEP +G+DP + ++ + EG
Sbjct: 125 LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMT 184
Query: 530 VILTSHNMEECEALCTKLTIMVNGQFTCLG 559
+++ +H++ + +++N G
Sbjct: 185 ILVVTHDLGLVLEYFDR-VLLLNRTVVASG 213
Score = 76.0 bits (188), Expect = 9e-16
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 19 KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI-------V 71
+V G K IGY PQ ++ DR P + L + V
Sbjct: 57 RVFGKPLE--KERKRIGYVPQRRSI-DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV 113
Query: 72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
+E+L + L +DR++ LSGG ++++ A AL+ +P L+ LDEP +G+DP + ++
Sbjct: 114 DEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYE 173
Query: 132 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 172
+ EG +++ +H++ + +++N G
Sbjct: 174 LLRELRREGMTILVVTHDLGLVLEYFDR-VLLLNRTVVASG 213
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 119 bits (302), Expect = 4e-31
Identities = 68/213 (31%), Positives = 102/213 (47%), Gaps = 6/213 (2%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L +K L K Y G+ A++ +S V GE LLG +G GKTT +++ G +P SG
Sbjct: 1 LELKGLSKTY----GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGE 56
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
+ + R+ IG Q AL LT E++ F ++R VP + V E L
Sbjct: 57 ILIDGRDVTGVPPERRN-IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
L +R LSGG +++++ A AL P L+ LDEP S +D R L ++
Sbjct: 116 ELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKE 175
Query: 523 AVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
E G I +H+ EE AL ++ +M G+
Sbjct: 176 LQRELGITTIYVTHDQEEALALADRIAVMNEGR 208
Score = 76.8 bits (190), Expect = 5e-16
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
IG Q AL LT E++ F ++R VP + V E L L +R LSG
Sbjct: 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSG 133
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 152
G +++++ A AL P L+ LDEP S +D R L ++ E G I +H+ EE
Sbjct: 134 GQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEE 193
Query: 153 CEALCTKLTIMVNGQ 167
AL ++ +M G+
Sbjct: 194 ALALADRIAVMNEGR 208
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 119 bits (302), Expect = 6e-31
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 10/223 (4%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
+L VK L + G+ A++ +SF + +GE GL+G +G+GK+T + + G +KPTSG
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 402 NAYVMNHSI----RDSMDLVRSYIGYCPQ--FDALNDRLTPREHLE--FYSRVRNVPSVL 453
+ + R + R I Q +LN R+T E + +
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 454 LNTIVNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
V L L +R LSGG +++++ A AL NP L+ DEPTS +D
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180
Query: 513 RRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
+ + +++ E G ++ +H++ + ++ +M G+
Sbjct: 181 QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGK 223
Score = 62.9 bits (154), Expect = 3e-11
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 6/142 (4%)
Query: 32 SYIGYCPQ--FDALNDRLTPREHLE--FYSRVRNVPSVLLNTIVNESLNKFALG-HYSDR 86
I Q +LN R+T E + + V L L +R
Sbjct: 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNR 141
Query: 87 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVIL 145
LSGG +++++ A AL NP L+ DEPTS +D + + +++ E G ++
Sbjct: 142 YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLF 201
Query: 146 TSHNMEECEALCTKLTIMVNGQ 167
+H++ + ++ +M G+
Sbjct: 202 ITHDLGVVAKIADRVAVMYAGK 223
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 117 bits (297), Expect = 2e-30
Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 6/202 (2%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ +K L K Y A+ +S + +GE ++G +G+GK+T +L G +PTSG
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 403 AYVMNHSI-----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI 457
V I ++ R +IG+ Q L LT E++E + VP
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
E L + LG + LSGG +++++ A AL +P +I DEPT +D + +
Sbjct: 121 AEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180
Query: 518 TCIER-AVSEGRCVILTSHNME 538
+ G +++ +H+ E
Sbjct: 181 ELLRELNKEAGTTIVVVTHDPE 202
Score = 63.7 bits (156), Expect = 1e-11
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 33 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
+IG+ Q L LT E++E + VP E L + LG + LS
Sbjct: 83 HIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELS 142
Query: 93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNME 151
GG +++++ A AL +P +I DEPT +D + + + G +++ +H+ E
Sbjct: 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 116 bits (294), Expect = 2e-30
Identities = 54/206 (26%), Positives = 86/206 (41%), Gaps = 38/206 (18%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR--DSM 414
G + ++ +S + GE G+LG NGAGK+T K L G +KP+SG + +
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
+L R I Y PQ +L L H +DR
Sbjct: 70 ELAR-KIAYVPQ----------------------------------ALELLGLAHLADRP 94
Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWTCIERAVSEGRCVILT 533
LSGG ++++ A AL PP++ LDEPTS +D L A G+ V++
Sbjct: 95 FNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV 154
Query: 534 SHNMEECEALCTKLTIMVNGQFTCLG 559
H++ ++ ++ +G+ G
Sbjct: 155 LHDLNLAARYADRVILLKDGRIVAQG 180
Score = 72.1 bits (178), Expect = 9e-15
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRF 128
V ++L L H +DR LSGG ++++ A AL PP++ LDEPTS +D
Sbjct: 77 YVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIEL 136
Query: 129 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 172
L A G+ V++ H++ ++ ++ +G+ G
Sbjct: 137 LELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 117 bits (296), Expect = 3e-29
Identities = 70/227 (30%), Positives = 97/227 (42%), Gaps = 40/227 (17%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
AV ISF + +GE G LG NGAGK+TT KMLTG + PTSG V +
Sbjct: 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR 97
Query: 420 YIGYCPQFD---------ALNDRLTPREHL------EFYSRVRNVPSVL-LNTIVNESLN 463
IG D L + + EF R+ + +L L +
Sbjct: 98 SIGL--VMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW--- 152
Query: 464 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA----RRFL-WT 518
VR LS G + + A ALL P ++FLDEPT G+D A R FL
Sbjct: 153 ----------PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202
Query: 519 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
ER + V+LT+H ++ LC ++ ++ GQ G+ L+
Sbjct: 203 NEERQAT----VLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245
Score = 70.5 bits (173), Expect = 3e-13
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 88 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA----RRFL-WTCIERAVSEGRC 142
VR LS G + + A ALL P ++FLDEPT G+D A R FL ER +
Sbjct: 154 VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQAT---- 209
Query: 143 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178
V+LT+H ++ LC ++ ++ GQ G+ L+
Sbjct: 210 VLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 115 bits (291), Expect = 3e-29
Identities = 64/214 (29%), Positives = 92/214 (42%), Gaps = 25/214 (11%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-------RDS 413
AVN +S V GE GL+G NGAGKTT F ++TG KP+SG I
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIAR 78
Query: 414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN------------ES 461
+ + R++ Q L LT E++ + R S LL E
Sbjct: 79 LGIARTF-----QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAREL 133
Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWTCI 520
L LG +DR LS G +R+L A AL P L+ LDEP +G++P
Sbjct: 134 LEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIR 193
Query: 521 ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
E G ++L H+M+ L ++ ++ G+
Sbjct: 194 ELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGE 227
Score = 68.8 bits (169), Expect = 5e-13
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWT 131
E L LG +DR LS G +R+L A AL P L+ LDEP +G++P
Sbjct: 132 ELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL 191
Query: 132 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
E G ++L H+M+ L ++ ++ G+
Sbjct: 192 IRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGE 227
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 111 bits (280), Expect = 6e-28
Identities = 56/201 (27%), Positives = 85/201 (42%), Gaps = 5/201 (2%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SM 414
G + +S V GE LLG NGAGKTT K + G + P SG+ I
Sbjct: 11 GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPH 70
Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF-ALGHYSDR 473
+ R+ IGY P+ + LT E+L + R + F L +
Sbjct: 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKR--KARLERVYELFPRLKERRKQ 128
Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533
TLSGG ++ L+ A AL+ P L+ LDEP+ G+ P ++ I EG ++L
Sbjct: 129 LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLV 188
Query: 534 SHNMEECEALCTKLTIMVNGQ 554
N + + ++ G+
Sbjct: 189 EQNARFALEIADRAYVLERGR 209
Score = 65.1 bits (160), Expect = 6e-12
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 3/135 (2%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKF-ALGHYSDREVRTLS 92
IGY P+ + LT E+L + R + F L + TLS
Sbjct: 77 IGYVPEGRRIFPELTVEENLLLGAYARRRAKR--KARLERVYELFPRLKERRKQLAGTLS 134
Query: 93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 152
GG ++ L+ A AL+ P L+ LDEP+ G+ P ++ I EG ++L N
Sbjct: 135 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF 194
Query: 153 CEALCTKLTIMVNGQ 167
+ + ++ G+
Sbjct: 195 ALEIADRAYVLERGR 209
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 110 bits (276), Expect = 1e-27
Identities = 58/197 (29%), Positives = 88/197 (44%), Gaps = 15/197 (7%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC 424
+S + GE L G NGAGKTT K+L G IK +SG+ ++N + + +S IGY
Sbjct: 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGS-ILLNGKPIKAKERRKS-IGYV 76
Query: 425 PQFDALNDRLTPREHLEFYS-----RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 479
Q L S + N L L +R +LS
Sbjct: 77 MQ--------DVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLS 128
Query: 480 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 539
GG K++L+ A ALL L+ DEPTSG+D + I ++G+ VI+ +H+ E
Sbjct: 129 GGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF 188
Query: 540 CEALCTKLTIMVNGQFT 556
+C ++ ++ NG
Sbjct: 189 LAKVCDRVLLLANGAIV 205
Score = 77.7 bits (192), Expect = 2e-16
Identities = 31/102 (30%), Positives = 50/102 (49%)
Query: 68 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 127
N L L +R +LSGG K++L+ A ALL L+ DEPTSG+D
Sbjct: 104 NEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNME 163
Query: 128 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT 169
+ I ++G+ VI+ +H+ E +C ++ ++ NG
Sbjct: 164 RVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 109 bits (274), Expect = 3e-27
Identities = 77/226 (34%), Positives = 115/226 (50%), Gaps = 7/226 (3%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
L K L K Y KG + V +S V GE GLLG NGAGKTTTF M+ G + +G
Sbjct: 3 TLTAKNLAKAY---KGRR-VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG 58
Query: 402 NAYVMNH--SIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNTIV 458
N + + S+ R IGY PQ ++ RL+ ++L ++R ++ +
Sbjct: 59 NIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRA 118
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
NE + +F + H D ++LSGG +R++ A AL NP I LDEP +G+DP + +
Sbjct: 119 NELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKR 178
Query: 519 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
IE G V++T HN+ E A+C + I+ G G+ T +
Sbjct: 179 IIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224
Score = 73.0 bits (179), Expect = 2e-14
Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 1/145 (0%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
IGY PQ ++ RL+ ++L ++R ++ + NE + +F + H D ++LS
Sbjct: 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLS 139
Query: 93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 152
GG +R++ A AL NP I LDEP +G+DP + + IE G V++T HN+ E
Sbjct: 140 GGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRE 199
Query: 153 CEALCTKLTIMVNGQFTCLGSATHL 177
A+C + I+ G G+ T +
Sbjct: 200 TLAVCERAYIVSQGHLIAHGTPTEI 224
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 107 bits (270), Expect = 1e-26
Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 5/209 (2%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L V+ + K Y G A+ IS V GE L+G +G GK+T +++ G +PTSG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
V + GY Q DAL LT +++ ++ VP E L
Sbjct: 61 VLVDGEPVTG----PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELL 116
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
L + + LSGG +++++ A AL +P ++ LDEP S +D R L +
Sbjct: 117 ELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLD 176
Query: 523 AVSE-GRCVILTSHNMEECEALCTKLTIM 550
E G+ V+L +H+++E L ++ ++
Sbjct: 177 IWRETGKTVLLVTHDIDEAVFLADRVVVL 205
Score = 60.2 bits (147), Expect = 3e-10
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
GY Q DAL LT +++ ++ VP E L L + + LSG
Sbjct: 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSG 134
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 152
G +++++ A AL +P ++ LDEP S +D R L + E G+ V+L +H+++E
Sbjct: 135 GMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDE 194
Query: 153 CEALCTKLTIM 163
L ++ ++
Sbjct: 195 AVFLADRVVVL 205
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 109 bits (275), Expect = 2e-26
Identities = 66/213 (30%), Positives = 108/213 (50%), Gaps = 10/213 (4%)
Query: 346 KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 405
+ + K Y N K AV+ ++ + GE L+G +G+GKTTT KM+ I+PTSG +
Sbjct: 5 ENVSKRYGN----KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60
Query: 406 MNHSIRDSMDLV--RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 463
I D +D V R IGY Q L LT E++ ++ + +E L+
Sbjct: 61 DGEDISD-LDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLD 119
Query: 464 KFAL--GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
L Y+DR LSGG ++++ A AL +PP++ +DEP +DP R+ L I+
Sbjct: 120 LVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIK 179
Query: 522 RAVSE-GRCVILTSHNMEECEALCTKLTIMVNG 553
E G+ ++ +H+++E L ++ +M G
Sbjct: 180 ELQKELGKTIVFVTHDIDEALKLADRIAVMDAG 212
Score = 59.2 bits (144), Expect = 1e-09
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL--GHYSDREVRTL 91
IGY Q L LT E++ ++ + +E L+ L Y+DR L
Sbjct: 77 IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL 136
Query: 92 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM 150
SGG ++++ A AL +PP++ +DEP +DP R+ L I+ E G+ ++ +H++
Sbjct: 137 SGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI 196
Query: 151 EECEALCTKLTIMVNG 166
+E L ++ +M G
Sbjct: 197 DEALKLADRIAVMDAG 212
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 110 bits (277), Expect = 2e-26
Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 10/212 (4%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----VMNHSIR 411
G K VN + +GE F ++GL+G+GK+TT +ML I+PT+G + +M S
Sbjct: 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV 63
Query: 412 DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
+ ++ R IG Q AL +T ++ + P E L L Y
Sbjct: 64 ELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE 123
Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL---WTCIERAVSEGR 528
R LSGG ++++ A AL P ++ +DE S +DP R + ++ + +
Sbjct: 124 HRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL--QK 181
Query: 529 CVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
++ +H+++E + ++ IM G+ +G+
Sbjct: 182 TIVFITHDLDEAIRIGDRIVIMKAGEIVQVGT 213
Score = 61.0 bits (148), Expect = 5e-10
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
IG Q AL +T ++ + P E L L Y R LSG
Sbjct: 73 IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSG 132
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL---WTCIERAVSEGRCVILTSHNM 150
G ++++ A AL P ++ +DE S +DP R + ++ + + ++ +H++
Sbjct: 133 GMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL--QKTIVFITHDL 190
Query: 151 EECEALCTKLTIMVNGQFTCLGS 173
+E + ++ IM G+ +G+
Sbjct: 191 DEAIRIGDRIVIMKAGEIVQVGT 213
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 105 bits (265), Expect = 3e-26
Identities = 60/201 (29%), Positives = 88/201 (43%), Gaps = 30/201 (14%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
SK K + +S GE ++G +GAGK+T L G + V+ +
Sbjct: 18 SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK 77
Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
R IGY PQ D L+ LT RE L F + L
Sbjct: 78 RSFRKIIGYVPQDDILHPTLTVRETLMF--------AAKL-------------------- 109
Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 534
R LSGG ++++S A+ L+ NP L+FLDEPTSG+D + + + + R GR +I +
Sbjct: 110 -RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSI 168
Query: 535 HNM-EECEALCTKLTIMVNGQ 554
H E L KL ++ G+
Sbjct: 169 HQPSSEIFELFDKLLLLSQGR 189
Score = 81.4 bits (202), Expect = 9e-18
Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 30/136 (22%)
Query: 33 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
IGY PQ D L+ LT RE L F + L R LS
Sbjct: 83 IIGYVPQDDILHPTLTVRETLMF--------AAKL---------------------RGLS 113
Query: 93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM-E 151
GG ++++S A+ L+ NP L+FLDEPTSG+D + + + + R GR +I + H
Sbjct: 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSS 173
Query: 152 ECEALCTKLTIMVNGQ 167
E L KL ++ G+
Sbjct: 174 EIFELFDKLLLLSQGR 189
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 106 bits (268), Expect = 4e-26
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 9/215 (4%)
Query: 340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 399
+L ++ + K + G + I+ V +GE +LG +G GK+T +++ G KPT
Sbjct: 1 MALLEIEGVSKSF----GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT 56
Query: 400 SGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
SG + + IGY Q DAL LT +++ +R
Sbjct: 57 SGEVLLDGRPVTG----PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAK 112
Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
E L L + D+ LSGG +++++ A AL P L+ LDEP +D R L
Sbjct: 113 ELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDE 172
Query: 520 IERAVSEGRC-VILTSHNMEECEALCTKLTIMVNG 553
+ R E R V+L +H+++E L ++ ++ N
Sbjct: 173 LLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207
Score = 65.7 bits (161), Expect = 5e-12
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
IGY Q DAL LT +++ +R E L L + D+ LSG
Sbjct: 74 IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSG 133
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEE 152
G +++++ A AL P L+ LDEP +D R L + R E R V+L +H+++E
Sbjct: 134 GMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDE 193
Query: 153 CEALCTKLTIMVNG 166
L ++ ++ N
Sbjct: 194 AVYLADRVVVLSNR 207
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 104 bits (262), Expect = 5e-26
Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 8/180 (4%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV----MNHSIRDSMDLVRSY 420
++F RGE LLG NGAGK+T L G ++P SG + +++S + ++ R
Sbjct: 11 LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLE-RRQR 69
Query: 421 IGYCPQFDALNDRLTPR--EHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTL 478
+G Q D + + + F + + V E+L +R L
Sbjct: 70 VGLVFQ-DPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCL 128
Query: 479 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
SGG K++++ A A+ P ++ LDEPT+G+DP R + + R +EG V++++H+++
Sbjct: 129 SGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188
Score = 70.1 bits (172), Expect = 6e-14
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
V E+L +R LSGG K++++ A A+ P ++ LDEPT+G+DP R +
Sbjct: 108 VREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167
Query: 131 TCIERAVSEGRCVILTSHNME 151
+ R +EG V++++H+++
Sbjct: 168 AILRRLRAEGMTVVISTHDVD 188
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 106 bits (267), Expect = 6e-26
Identities = 61/218 (27%), Positives = 97/218 (44%), Gaps = 27/218 (12%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR--D 412
+ K + +S+ V GE + ++G NGAGKTT +LTG P+SG+ ++ +
Sbjct: 40 RRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGE 99
Query: 413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN-VPSVLLNTI-------------- 457
++ +R IG L++R RE VR+ V S +I
Sbjct: 100 TIFELRKRIGLVSS--ELHERFRVRE------TVRDVVLSGFFASIGIYQEDLTAEDLAA 151
Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFL 516
L H +DR +LS G +R++ A AL+ +P L+ LDEP G+D AR + L
Sbjct: 152 AQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLL 211
Query: 517 WTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNG 553
E A S ++ +H+ EE T ++ G
Sbjct: 212 NRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEG 249
Score = 64.3 bits (157), Expect = 2e-11
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RF 128
L H +DR +LS G +R++ A AL+ +P L+ LDEP G+D AR +
Sbjct: 151 AAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQL 210
Query: 129 LWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNG 166
L E A S ++ +H+ EE T ++ G
Sbjct: 211 LNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEG 249
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 110 bits (278), Expect = 8e-26
Identities = 55/214 (25%), Positives = 87/214 (40%), Gaps = 26/214 (12%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-----AYVMNHSIRDSM 414
A++ +S V GE LLG NGAGK+T K+L+G P SG V S RD++
Sbjct: 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81
Query: 415 DLVRSYIGYCPQFDALNDRLT----------PREHLEFYSRVRNVPSVLLNTIVNESLNK 464
I Q +L L+ P R + E L +
Sbjct: 82 AAG---IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKA------MRRRARELLAR 132
Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWTCIERA 523
L D V LS ++ + A AL + ++ LDEPT+ + R I R
Sbjct: 133 LGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-IRRL 191
Query: 524 VSEGRCVILTSHNMEECEALCTKLTIMVNGQFTC 557
++G +I SH ++E + ++T++ +G+
Sbjct: 192 KAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225
Score = 103 bits (259), Expect = 2e-23
Identities = 63/251 (25%), Positives = 106/251 (42%), Gaps = 35/251 (13%)
Query: 325 DVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAG 384
++ VL V+ L V +SF V GE G+ GL GAG
Sbjct: 246 ELEDLFPEPPEEGIGEPVLEVRNL--------SGGGKVRDVSFTVRAGEILGIAGLVGAG 297
Query: 385 KTTTFKMLTGAIKPTSGNAY-----VMNHSIRDSMDLVRSYIGYCPQFDALNDR------ 433
+T + L GA +SG V S RD++ I Y P DR
Sbjct: 298 RTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA---GIAYVP-----EDRKSEGLV 349
Query: 434 --LTPREHLEFYSRVRNVPSVLLNT-----IVNESLNKFALGHYS-DREVRTLSGGNKRK 485
++ E++ S R L++ + + + + S ++ + TLSGGN++K
Sbjct: 350 LDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK 409
Query: 486 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 545
+ A L +P ++ LDEPT G+D GA+ ++ I +EG+ +++ S + E L
Sbjct: 410 VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSD 469
Query: 546 KLTIMVNGQFT 556
++ +M G+
Sbjct: 470 RILVMREGRIV 480
Score = 72.9 bits (180), Expect = 1e-13
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
++ + TLSGGN++K+ A L +P ++ LDEPT G+D GA+ ++ I +EG+ ++
Sbjct: 396 EQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAIL 455
Query: 145 LTSHNMEECEALCTKLTIMVNGQFT 169
+ S + E L ++ +M G+
Sbjct: 456 MISSELPELLGLSDRILVMREGRIV 480
Score = 66.8 bits (164), Expect = 1e-11
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWTCIERAVSEGRCV 143
D V LS ++ + A AL + ++ LDEPT+ + R I R ++G +
Sbjct: 140 DTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-IRRLKAQGVAI 198
Query: 144 ILTSHNMEECEALCTKLTIMVNGQFTC 170
I SH ++E + ++T++ +G+
Sbjct: 199 IYISHRLDEVFEIADRITVLRDGRVVG 225
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 105 bits (264), Expect = 1e-25
Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 6/215 (2%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI----RD 412
G + + + V RGE ++G +G+GK+T +++ G ++P SG + I
Sbjct: 11 GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEA 70
Query: 413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV-RNVPSVLLNTIVNESLNKFALGHYS 471
+ +R +G Q AL D LT E++ F R + + IV E L L
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE 130
Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCV 530
D LSGG K++++ A AL +P L+ DEPT+G+DP + G
Sbjct: 131 DLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTS 190
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
I+ +H+++ A+ ++ ++ +G+ G+ L+
Sbjct: 191 IMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225
Score = 65.6 bits (161), Expect = 4e-12
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRV-RNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
+G Q AL D LT E++ F R + + IV E L L D LS
Sbjct: 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELS 138
Query: 93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHNME 151
GG K++++ A AL +P L+ DEPT+G+DP + G I+ +H+++
Sbjct: 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD 198
Query: 152 ECEALCTKLTIMVNGQFTCLGSATHLK 178
A+ ++ ++ +G+ G+ L+
Sbjct: 199 TAFAIADRIAVLYDGKIVAEGTPEELR 225
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 105 bits (265), Expect = 1e-25
Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 7/208 (3%)
Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI--- 410
S G + ++ + V RGE +LG +G+GK+T +++ G ++P G + I
Sbjct: 16 KSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQL 75
Query: 411 -RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV-RNVPSVLLNTIVNESLNKFAL- 467
+ + +R +G Q AL LT E++ F R +P L+ +V L L
Sbjct: 76 SEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLR 135
Query: 468 GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSE 526
G +D LSGG +++++ A A+ +P L+FLDEPTSG+DP A E +
Sbjct: 136 GAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL 195
Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQ 554
G VI+ +H+++ + ++ ++ +G+
Sbjct: 196 GLTVIMVTHDLDSLLTIADRVAVLADGK 223
Score = 68.0 bits (167), Expect = 1e-12
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRV-RNVPSVLLNTIVNESLNKFAL-GHYSDREVRTL 91
+G Q AL LT E++ F R +P L+ +V L L G +D L
Sbjct: 87 MGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSEL 146
Query: 92 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHNM 150
SGG +++++ A A+ +P L+FLDEPTSG+DP A E + G VI+ +H++
Sbjct: 147 SGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL 206
Query: 151 EECEALCTKLTIMVNGQ 167
+ + ++ ++ +G+
Sbjct: 207 DSLLTIADRVAVLADGK 223
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 103 bits (258), Expect = 2e-25
Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 42/216 (19%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L +K + K Y G K +N +S + GE LLG +G+GK+T + + G +P SG+
Sbjct: 1 LELKNVSKRY----GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS 56
Query: 403 AYVMNHSIRDSMDLV---RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
+ + D D + R IG Q AL LT E N+
Sbjct: 57 ILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLE---------NI---------- 97
Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
ALG LSGG +++++ A AL +P ++ LDEPTS +DP RR +
Sbjct: 98 ------ALG---------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRAL 142
Query: 520 IERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
++ ++ G V+L +H+++E L ++ ++ +G+
Sbjct: 143 LKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
Score = 67.2 bits (165), Expect = 4e-13
Identities = 25/78 (32%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149
LSGG +++++ A AL +P ++ LDEPTS +DP RR + ++ ++ G V+L +H+
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160
Query: 150 MEECEALCTKLTIMVNGQ 167
++E L ++ ++ +G+
Sbjct: 161 LDEAARLADRVVVLRDGK 178
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 109 bits (275), Expect = 2e-25
Identities = 66/261 (25%), Positives = 113/261 (43%), Gaps = 20/261 (7%)
Query: 314 LHPVPVSL-----EEDDVRKERERVEHGADSGDVLVVKRLFKIYANSK-------GTKPA 361
HP L D + R + +L V+ L K Y + K G A
Sbjct: 247 QHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKA 306
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI----RDSMDLV 417
V+ +SF + GE GL+G +G+GK+T ++L G + P+SG+ + + L
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 418 RS-YIGYCPQFDALNDRLTPREHLEFYSRVRNVPS-VLLNTIVNESLNKFALGH-YSDRE 474
R + + + +LN R+T + L R+ S V E L L + DR
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRY 426
Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILT 533
LSGG +++++ A AL P L+ LDEP S +D + + ++ E G +
Sbjct: 427 PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFI 486
Query: 534 SHNMEECEALCTKLTIMVNGQ 554
SH++ + ++ +M +G+
Sbjct: 487 SHDLAVVRYIADRVAVMYDGR 507
Score = 92.6 bits (231), Expect = 7e-20
Identities = 60/236 (25%), Positives = 100/236 (42%), Gaps = 23/236 (9%)
Query: 339 SGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 398
+L V+ L +A G PAV +SF V GE G++G +G+GK+T L G +
Sbjct: 2 MSPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE 61
Query: 399 ----TSG-----NAYVMNHSIRDSMDLVRSYIGYCPQ--FDALNDRLTPREHLE--FYSR 445
TSG ++ S R+ L I Q +LN +T + +
Sbjct: 62 GGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH 121
Query: 446 VRNVPSVLLNTIVNESLNKFALGHYSDREVRT-----LSGGNKRKLSTAIALLGNPPLIF 500
+ + V E L + L D E R LSGG ++++ A+AL P L+
Sbjct: 122 GKGSRAEARKRAV-ELLEQVGL---PDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLI 177
Query: 501 LDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF 555
DEPT+ +D + + ++ E G V+ +H++ L ++ +M G+
Sbjct: 178 ADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233
Score = 58.0 bits (141), Expect = 8e-09
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149
LSGG ++++ A+AL P L+ DEPT+ +D + + ++ E G V+ +H+
Sbjct: 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD 214
Query: 150 MEECEALCTKLTIMVNGQF 168
+ L ++ +M G+
Sbjct: 215 LGVVAELADRVVVMYKGEI 233
Score = 51.4 bits (124), Expect = 8e-07
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 33 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPS-VLLNTIVNESLNKFALGH-YSDREVRT 90
+ + + +LN R+T + L R+ S V E L L + DR
Sbjct: 370 QMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE 429
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149
LSGG +++++ A AL P L+ LDEP S +D + + ++ E G + SH+
Sbjct: 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD 489
Query: 150 MEECEALCTKLTIMVNGQ 167
+ + ++ +M +G+
Sbjct: 490 LAVVRYIADRVAVMYDGR 507
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 103 bits (260), Expect = 3e-25
Identities = 52/204 (25%), Positives = 93/204 (45%), Gaps = 7/204 (3%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
++ +K + KIY A+ ++ + GE ++G +G+GK+T +L G KPTSG
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 402 NAYVMNHSI-----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT 456
+ + ++ L R IG+ Q L LT E++E + +
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR 120
Query: 457 IVNESLNKFALGHYSDRE-VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
E L L ++ LSGG +++++ A AL+ NP +I DEPT +D +
Sbjct: 121 AAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKE 180
Query: 516 LWTCI-ERAVSEGRCVILTSHNME 538
+ + E G+ +I+ +H+ E
Sbjct: 181 VLELLRELNKERGKTIIMVTHDPE 204
Score = 60.2 bits (147), Expect = 3e-10
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 33 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE-VRTL 91
IG+ Q L LT E++E + + E L L ++ L
Sbjct: 84 KIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSEL 143
Query: 92 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI-ERAVSEGRCVILTSHNM 150
SGG +++++ A AL+ NP +I DEPT +D + + + E G+ +I+ +H+
Sbjct: 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203
Query: 151 E 151
E
Sbjct: 204 E 204
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 103 bits (259), Expect = 4e-25
Identities = 65/213 (30%), Positives = 108/213 (50%), Gaps = 7/213 (3%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L V+ L K + K + +S V RG+ F +LG G+GK+ + + G IKP SG
Sbjct: 1 LKVENLSKDWKEFK-----LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGK 55
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
+ I + + + I Y PQ AL +T +++ + + R V + V E
Sbjct: 56 ILLNGKDITN-LPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIA 114
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
+ H +R+ TLSGG +++++ A AL+ NP ++ LDEP S +D + L +++
Sbjct: 115 EMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKK 174
Query: 523 AVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
E G V+ +H+ EE AL K+ IM+NG+
Sbjct: 175 IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGK 207
Score = 73.5 bits (181), Expect = 9e-15
Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
I Y PQ AL +T +++ + + R V + V E + H +R+ TLSG
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSG 132
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 152
G +++++ A AL+ NP ++ LDEP S +D + L +++ E G V+ +H+ EE
Sbjct: 133 GEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE 192
Query: 153 CEALCTKLTIMVNGQ 167
AL K+ IM+NG+
Sbjct: 193 AWALADKVAIMLNGK 207
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 105 bits (263), Expect = 1e-24
Identities = 58/212 (27%), Positives = 102/212 (48%), Gaps = 6/212 (2%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L +K + K + G+ + ++ + GE LLG +G GK+T +M+ G +PTSG
Sbjct: 4 LELKNVRKSF----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
+ + D + + I Q AL +T E++ F ++R VP ++ V E
Sbjct: 60 ILIDGRDVTD-LPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
L H +R+ LSGG +++++ A AL+ P + LDEP S +D R + + I++
Sbjct: 119 KLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKK 178
Query: 523 AV-SEGRCVILTSHNMEECEALCTKLTIMVNG 553
G I +H+ E L ++ +M +G
Sbjct: 179 LHERLGTTTIYVTHDQVEAMTLADRIVVMNDG 210
Score = 64.6 bits (158), Expect = 3e-11
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
I Q AL +T E++ F ++R VP ++ V E L H +R+ LSG
Sbjct: 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSG 136
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEE 152
G +++++ A AL+ P + LDEP S +D R + + I++ G I +H+ E
Sbjct: 137 GQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVE 196
Query: 153 CEALCTKLTIMVNG 166
L ++ +M +G
Sbjct: 197 AMTLADRIVVMNDG 210
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 102 bits (256), Expect = 1e-24
Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 7/226 (3%)
Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
+K + K++ ++ G A+ +S V +GE FG++G +GAGK+T + + G +PTSG+
Sbjct: 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63
Query: 405 VMNHSI----RDSMDLVRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
V + + R IG Q F+ L+ R T E++ + VP + V
Sbjct: 64 VDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR-TVFENVALPLEIAGVPKAEIEERVL 122
Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
E L L +D LSGG K+++ A AL NP ++ DE TS +DP + +
Sbjct: 123 ELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILAL 182
Query: 520 IERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+ E G ++L +H ME + +C ++ +M G+ G+ +
Sbjct: 183 LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
Score = 54.1 bits (131), Expect = 3e-08
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Query: 39 QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK 98
F+ L+ R T E++ + VP + V E L L +D LSGG K++
Sbjct: 90 HFNLLSSR-TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQR 148
Query: 99 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALC 157
+ A AL NP ++ DE TS +DP + + + E G ++L +H ME + +C
Sbjct: 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRIC 208
Query: 158 TKLTIMVNGQFTCLGSATHL 177
++ +M G+ G+ +
Sbjct: 209 DRVAVMEKGEVVEEGTVEEV 228
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 101 bits (253), Expect = 2e-24
Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 12/221 (5%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ ++ + K + G A++ ++ + GE LLG +G GKTTT +M+ G +PTSG
Sbjct: 1 VELENVTKRF----GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGR 56
Query: 403 AYVMNHSIRDSMDLV---RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
Y+ RD DL R I Q AL +T +++ F ++R VP ++ V
Sbjct: 57 IYIGG---RDVTDLPPKDRD-IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVR 112
Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
E + H DR+ + LSGG +++++ A++ P + +DEP S +D R +
Sbjct: 113 EVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAE 172
Query: 520 IERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 559
++R G I +H+ E + ++ +M +GQ +G
Sbjct: 173 LKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
Score = 64.6 bits (158), Expect = 8e-12
Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 42 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 101
AL +T +++ F ++R VP ++ V E + H DR+ + LSGG +++++
Sbjct: 82 ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVAL 141
Query: 102 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKL 160
A++ P + +DEP S +D R + ++R G I +H+ E + ++
Sbjct: 142 GRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRI 201
Query: 161 TIMVNGQFTCLG 172
+M +GQ +G
Sbjct: 202 AVMNDGQIQQIG 213
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 99.7 bits (249), Expect = 5e-24
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 3/173 (1%)
Query: 363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG 422
+ +SF + GE + G NGAGKTT ++L G ++P +G Y I++ + +
Sbjct: 19 SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALL 78
Query: 423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGN 482
Y + LT E+L F+ R S TI E+L + L D V LS G
Sbjct: 79 YLGHQPGIKTELTALENLHFWQRFHG--SGNAATIW-EALAQVGLAGLEDLPVGQLSAGQ 135
Query: 483 KRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
+R+++ A L PL LDEP + +D L + ++G V+LT+H
Sbjct: 136 QRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188
Score = 66.2 bits (162), Expect = 2e-12
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 26 TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 85
+ + L Y+G+ P + LT E+L F+ R S TI E+L + L D
Sbjct: 72 SYHQALLYLGHQP---GIKTELTALENLHFWQRFHG--SGNAATIW-EALAQVGLAGLED 125
Query: 86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
V LS G +R+++ A L PL LDEP + +D L + ++G V+L
Sbjct: 126 LPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLL 185
Query: 146 TSH 148
T+H
Sbjct: 186 TTH 188
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 101 bits (253), Expect = 6e-24
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 6/204 (2%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-----R 411
G VN +S V GE F ++GL+G+GK+T + + I+PTSG + I +
Sbjct: 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRK 94
Query: 412 DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
+ +L R I Q AL T E++ F V+ VP E+L L +
Sbjct: 95 ELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWE 154
Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 530
+ LSGG ++++ A AL +P ++ +DE S +DP RR + + R +E + +
Sbjct: 155 HKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTI 214
Query: 531 ILTSHNMEECEALCTKLTIMVNGQ 554
+ +H+++E L ++ IM +G+
Sbjct: 215 VFITHDLDEALRLGDRIAIMKDGR 238
Score = 55.7 bits (135), Expect = 2e-08
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 132
E+L L + + LSGG ++++ A AL +P ++ +DE S +DP RR +
Sbjct: 143 EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDE 202
Query: 133 IERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 167
+ R +E + ++ +H+++E L ++ IM +G+
Sbjct: 203 LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGR 238
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 100 bits (252), Expect = 6e-24
Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 10/231 (4%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L V+ L +Y K A+N +S + RGE G++G +G+GK+T ++L G KP+SG+
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 403 AYVMNHSIRDSMDLVRSY---IGYCPQ--FDALNDRLTPREHLEFYSRVRNVPSVLLNTI 457
+ + +++ + Q + +LN R T L R +
Sbjct: 64 ILL-DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR-- 120
Query: 458 VNESLNKFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
+ E L++ L + DR LSGG +++++ A AL+ P L+ LDEPTS +D + +
Sbjct: 121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180
Query: 517 WTCIERAVSEGRCVIL-TSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
+ E L SH++ E +C ++ +M NGQ +G L S
Sbjct: 181 LNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
Score = 56.9 bits (138), Expect = 5e-09
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TSHN 149
LSGG +++++ A AL+ P L+ LDEPTS +D + + + E L SH+
Sbjct: 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD 201
Query: 150 MEECEALCTKLTIMVNGQFTCLGSATHLKS 179
+ E +C ++ +M NGQ +G L S
Sbjct: 202 LALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 100 bits (251), Expect = 7e-24
Identities = 68/214 (31%), Positives = 112/214 (52%), Gaps = 6/214 (2%)
Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR--DS 413
G K AVN ++ + +GE L+G +G+GKTTT KM+ I+PTSG ++ IR D
Sbjct: 11 GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL--GHYS 471
++L R IGY Q L +T E++ ++ P + +E L L ++
Sbjct: 71 VELRRK-IGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFA 129
Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 530
DR LSGG ++++ A AL +PPL+ +DEP +DP R L +R E G+ +
Sbjct: 130 DRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTI 189
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+ +H+++E L ++ IM NG+ +G+ +
Sbjct: 190 VFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
Score = 56.9 bits (138), Expect = 4e-09
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 81 GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE- 139
++DR LSGG ++++ A AL +PPL+ +DEP +DP R L +R E
Sbjct: 126 AEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL 185
Query: 140 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
G+ ++ +H+++E L ++ IM NG+ +G+ +
Sbjct: 186 GKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 98.4 bits (246), Expect = 2e-23
Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 37/222 (16%)
Query: 352 YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 411
Y N + PA++ +S + GE ++G G+GK+T K+L G KPTSG+ + IR
Sbjct: 12 YPNQE--IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIR 69
Query: 412 --DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN-----VPSV----LLNTIVNE 460
D DL R IGY PQ + L FY +R+ P +L
Sbjct: 70 QLDPADL-RRNIGYVPQ----DVTL-------FYGTLRDNITLGAPLADDERILRAAELA 117
Query: 461 SLNKFALGHYS--DREV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
+ F H + D ++ R LSGG ++ ++ A ALL +PP++ LDEPTS MD +
Sbjct: 118 GVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177
Query: 515 FLWTCIER--AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
L ER + + +I+ +H + L ++ +M +G+
Sbjct: 178 RL---KERLRQLLGDKTLIIITHRPSLLD-LVDRIIVMDSGR 215
Score = 57.6 bits (140), Expect = 2e-09
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 12/101 (11%)
Query: 75 LNKFALGHYS--DREV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 128
+ F H + D ++ R LSGG ++ ++ A ALL +PP++ LDEPTS MD +
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 129 LWTCIER--AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
L ER + + +I+ +H + L ++ +M +G+
Sbjct: 179 L---KERLRQLLGDKTLIIITHRPSLLD-LVDRIIVMDSGR 215
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 96.7 bits (242), Expect = 2e-23
Identities = 65/218 (29%), Positives = 96/218 (44%), Gaps = 43/218 (19%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
VL V+ L K AV +SF V GE G+ GL G G+T + L G P SG
Sbjct: 4 VLEVRGL--------SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASG 55
Query: 402 NAYVMNHSI--RDSMDLVRSYIGYCPQFDALNDRLTPRE--HLEFYSRVRNVPSVLLNTI 457
+ + R D +R+ I Y P+ DR RE L+ SV N
Sbjct: 56 EITLDGKPVTRRSPRDAIRAGIAYVPE-----DRK--REGLVLDL--------SVAENIA 100
Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
++ LSGGN++K+ A L +P ++ LDEPT G+D GA+ ++
Sbjct: 101 LS----------------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIY 144
Query: 518 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 555
I G+ V+L S ++E LC ++ +M G+
Sbjct: 145 RLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
Score = 66.3 bits (163), Expect = 1e-12
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGGN++K+ A L +P ++ LDEPT G+D GA+ ++ I G+ V+L S +
Sbjct: 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164
Query: 151 EECEALCTKLTIMVNGQF 168
+E LC ++ +M G+
Sbjct: 165 DELLGLCDRILVMYEGRI 182
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 98.9 bits (247), Expect = 3e-23
Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 16/237 (6%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
++ VK L K Y A+ ++ + +GE ++G +GAGK+T + L G + PTSG
Sbjct: 3 MIEVKNLSKTYPGGH---QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG 59
Query: 402 NAYVMNHSIR----DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNT 456
I + +R IG Q L RL+ E++ + L
Sbjct: 60 EILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGL 119
Query: 457 IVNE-------SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
E +L + + + + TLSGG +++++ A AL+ P +I DEP + +D
Sbjct: 120 FSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179
Query: 510 P-GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
P A++ + + +G VI+ H ++ + ++ + G+ G A+ L
Sbjct: 180 PESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236
Score = 56.1 bits (136), Expect = 9e-09
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWT 131
++L + + + + TLSGG +++++ A AL+ P +I DEP + +DP A++ +
Sbjct: 130 DALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDI 189
Query: 132 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178
+ +G VI+ H ++ + ++ + G+ G A+ L
Sbjct: 190 LKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 96.3 bits (241), Expect = 3e-23
Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 40/183 (21%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMD 415
KP + +S + GE ++G +G+GK+T K+L PTSG + +RD ++
Sbjct: 13 RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLE 72
Query: 416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV 475
+R I Y PQ L + + E++
Sbjct: 73 SLRKNIAYVPQD-----------------------PFLFSGTIRENI------------- 96
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
LSGG +++++ A ALL +PP++ LDE TS +DP + + RA+++G+ VI+ +H
Sbjct: 97 --LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL-RALAKGKTVIVIAH 153
Query: 536 NME 538
+
Sbjct: 154 RLS 156
Score = 57.4 bits (140), Expect = 9e-10
Identities = 23/61 (37%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++++ A ALL +PP++ LDE TS +DP + + RA+++G+ VI+ +H +
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL-RALAKGKTVIVIAHRL 155
Query: 151 E 151
Sbjct: 156 S 156
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 100 bits (250), Expect = 5e-23
Identities = 61/227 (26%), Positives = 115/227 (50%), Gaps = 8/227 (3%)
Query: 345 VKRLFKIYANSKGTKP-AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 403
++ + K + + A++ +S + +GE FG++G +GAGK+T +++ +PTSG+
Sbjct: 4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63
Query: 404 YVMNHSI----RDSMDLVRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458
+V + + +R IG Q F+ L+ R T E++ F + VP + V
Sbjct: 64 FVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR-TVFENVAFPLELAGVPKAEIKQRV 122
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
E L L +DR LSGG K++++ A AL NP ++ DE TS +DP + +
Sbjct: 123 AELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182
Query: 519 CIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
++ E G ++L +H ME + +C ++ ++ G+ G+ + +
Sbjct: 183 LLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
Score = 59.2 bits (144), Expect = 2e-09
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 3/146 (2%)
Query: 34 IGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
IG Q F+ L+ R T E++ F + VP + V E L L +DR LS
Sbjct: 85 IGMIFQHFNLLSSR-TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLS 143
Query: 93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNME 151
GG K++++ A AL NP ++ DE TS +DP + + ++ E G ++L +H ME
Sbjct: 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME 203
Query: 152 ECEALCTKLTIMVNGQFTCLGSATHL 177
+ +C ++ ++ G+ G+ + +
Sbjct: 204 VVKRICDRVAVLDQGRLVEEGTVSEV 229
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 98.5 bits (246), Expect = 6e-23
Identities = 64/213 (30%), Positives = 107/213 (50%), Gaps = 15/213 (7%)
Query: 349 FKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408
F Y NS+ A+ +SF + GE +LG NG+GK+T K+LTG +KP SG +
Sbjct: 15 FS-YPNSE--NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGI 71
Query: 409 SI-RDSMDLVRSYIGYC---P--QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
+I ++++ +R IG P QF T + + F + VP + I+++
Sbjct: 72 TISKENLKEIRKKIGIIFQNPDNQFIG----ATVEDDIAFGLENKKVPPKKMKDIIDDLA 127
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
K + Y D+E + LSGG K++++ A L NP +I DE TS +DP +R + +
Sbjct: 128 KKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVD 187
Query: 523 AVSEG-RCVILTSHNMEECEALCTKLTIMVNGQ 554
+ +I +H+M+E L K+ + G+
Sbjct: 188 LRKTRKKTLISITHDMDEA-ILADKVIVFSEGK 219
Score = 59.6 bits (145), Expect = 8e-10
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 60 RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 119
+ VP + I+++ K + Y D+E + LSGG K++++ A L NP +I DE TS
Sbjct: 112 KKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTS 171
Query: 120 GMDPGARRFLWTCIERAVSEG-RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH-L 177
+DP +R + + + +I +H+M+E L K+ + G+ G L
Sbjct: 172 MLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPKEIL 230
Query: 178 KSK 180
+K
Sbjct: 231 NNK 233
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 96.8 bits (242), Expect = 7e-23
Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 23/235 (9%)
Query: 324 DDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGA 383
++V K + G+ S + K G A+ +SF V RGE GL+G NGA
Sbjct: 4 ENVSKSYPTYKGGSSS----LKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGA 59
Query: 384 GKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFY 443
GK+T ++L G P SG V + + L G N LT RE++
Sbjct: 60 GKSTLLRLLAGIYPPDSGTVTVRG-RVSSLLGL-----GG-----GFNPELTGRENIYLN 108
Query: 444 SRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD 502
R+ + ++ ++E + F+ LG + D V+T S G K +L+ AIA P ++ +D
Sbjct: 109 GRLLGLSRKEIDEKIDEIIE-FSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID 167
Query: 503 EPTSGMDPGARRFLWTCIER---AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
E + D F C R + +G+ VIL SH+ + LC + ++ G+
Sbjct: 168 EVLAVGD---AAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGK 219
Score = 51.0 bits (123), Expect = 3e-07
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 42 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLS 100
N LT RE++ R+ + ++ ++E + F+ LG + D V+T S G K +L+
Sbjct: 94 GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIE-FSELGDFIDLPVKTYSSGMKARLA 152
Query: 101 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER---AVSEGRCVILTSHNMEECEALC 157
AIA P ++ +DE + D F C R + +G+ VIL SH+ + LC
Sbjct: 153 FAIATALEPDILLIDEVLAVGD---AAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLC 209
Query: 158 TKLTIMVNGQ 167
+ ++ G+
Sbjct: 210 DRALVLEKGK 219
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 99.3 bits (248), Expect = 1e-22
Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 11/213 (5%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G A++ IS + GE LLG +GAGK+T +++ G P +G + + D +L
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL 72
Query: 417 -VRSY-IGYCPQFDALNDRLTPREHLEFYSRVRNV--PSVLLNTIVNESLNKFALGHYSD 472
VR +G+ Q AL +T +++ F +VR + V E L L +D
Sbjct: 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD 132
Query: 473 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR----RFLWTCIERAVSEGR 528
R LSGG +++++ A AL P ++ LDEP +D R R+L +R G
Sbjct: 133 RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR---LGV 189
Query: 529 CVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 561
+ +H+ EE L ++ ++ G+ +G
Sbjct: 190 TTVFVTHDQEEALELADRVVVLNQGRIEQVGPP 222
Score = 62.0 bits (151), Expect = 2e-10
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNV--PSVLLNTIVNESLNKFALGHYSDREVRTL 91
+G+ Q AL +T +++ F +VR + V E L L +DR L
Sbjct: 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQL 138
Query: 92 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR----RFLWTCIERAVSEGRCVILTS 147
SGG +++++ A AL P ++ LDEP +D R R+L +R G + +
Sbjct: 139 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR---LGVTTVFVT 195
Query: 148 HNMEECEALCTKLTIMVNGQFTCLGSA 174
H+ EE L ++ ++ G+ +G
Sbjct: 196 HDQEEALELADRVVVLNQGRIEQVGPP 222
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 96.9 bits (242), Expect = 1e-22
Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 11/216 (5%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI--RDSMDLVR 418
A+N +S V GE ++G NGAGKTT ++TG +P G+ + + R
Sbjct: 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76
Query: 419 SYIGYCPQFDALNDRLTPREHLEF-YSRVRNVPSVLLNTI-------VNESLNKFALGHY 470
+ IG Q + + LT E+LE R ++V + L + + E L L
Sbjct: 77 AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE 136
Query: 471 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 530
+DR LS G K+ L + L+ +P L+ LDEP +GM + ++++ V
Sbjct: 137 ADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL-KSLAGKHSV 195
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
++ H+ME ++ K+T++ G GS +++
Sbjct: 196 VVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231
Score = 55.3 bits (134), Expect = 1e-08
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Query: 47 LTPREHLEF-YSRVRNVPSVLLNTI-------VNESLNKFALGHYSDREVRTLSGGNKRK 98
LT E+LE R ++V + L + + E L L +DR LS G K+
Sbjct: 92 LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQW 151
Query: 99 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCT 158
L + L+ +P L+ LDEP +GM + ++++ V++ H+ME ++
Sbjct: 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL-KSLAGKHSVVVVEHDMEFVRSIAD 210
Query: 159 KLTIMVNGQFTCLGSATHLKS 179
K+T++ G GS +++
Sbjct: 211 KVTVLHQGSVLAEGSLDQVQA 231
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 101 bits (253), Expect = 1e-22
Identities = 77/254 (30%), Positives = 119/254 (46%), Gaps = 28/254 (11%)
Query: 325 DVRKERERVEHGADSGDVLVVKRLFKIYAN-SKGTKPAVNQISFGVGRGECFGLLGLNGA 383
+V KE E VE G ++ V+ + K Y + +G AV+ +S V GE FG++G +GA
Sbjct: 266 EVEKECE-VEVGEP---IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGA 321
Query: 384 GKTTTFKMLTGAIKPTSGNAYV--------MNHSIRDSMDLVRSYIGYCPQFDALN---- 431
GKTT K++ G ++PTSG V M D + YIG Q L
Sbjct: 322 GKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRT 381
Query: 432 --DRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL 486
D LT LE +R++ V L +E + L Y D LS G + ++
Sbjct: 382 VLDNLTEAIGLELPDELARMKAV-ITLKMVGFDEEKAEEILDKYPD----ELSEGERHRV 436
Query: 487 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCT 545
+ A L+ P ++ LDEPT MDP + + I +A E + I+ SH+M+ +C
Sbjct: 437 ALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCD 496
Query: 546 KLTIMVNGQFTCLG 559
+ +M +G+ +G
Sbjct: 497 RAALMRDGKIVKIG 510
Score = 60.6 bits (147), Expect = 1e-09
Identities = 66/235 (28%), Positives = 98/235 (41%), Gaps = 40/235 (17%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRDSMDL 416
K + ISF + GE G+LG +GAGK+ +L G +PTSG + + ++ +
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI-IYHVALCEKCGY 71
Query: 417 VR--SYIGY-CPQF---------------DALNDRLTPREHLEF------YSRVRNVPSV 452
V S +G CP D L R+ R + Y + +V
Sbjct: 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNV 131
Query: 453 L--LNTI---VNESLNKFA-------LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF 500
L L I E++ + L H R LSGG K+++ A L P L
Sbjct: 132 LEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFL 191
Query: 501 LDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
DEPT +DP + + +E AV + G ++LTSH E E L K + NG+
Sbjct: 192 ADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGE 246
Score = 52.1 bits (125), Expect = 5e-07
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 143
D+ LS G + +++ A L+ P ++ LDEPT MDP + + I +A E +
Sbjct: 422 DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTF 481
Query: 144 ILTSHNMEECEALCTKLTIMVNGQFTCLG 172
I+ SH+M+ +C + +M +G+ +G
Sbjct: 482 IIVSHDMDFVLDVCDRAALMRDGKIVKIG 510
Score = 51.7 bits (124), Expect = 7e-07
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 80 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-S 138
L H R LSGG K+++ A L P L DEPT +DP + + +E AV +
Sbjct: 158 LSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA 217
Query: 139 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSM 182
G ++LTSH E E L K + NG+ G+ + + M
Sbjct: 218 SGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFM 261
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 101 bits (255), Expect = 1e-22
Identities = 65/222 (29%), Positives = 105/222 (47%), Gaps = 37/222 (16%)
Query: 352 YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 411
Y + PA++ +S + GE ++G G+GK+T K+L G +PT G+ + IR
Sbjct: 473 YPGQE--TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIR 530
Query: 412 --DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN-----VPSV----LLNTIVNE 460
D DL R IGY PQ + RL FY +R+ P +L
Sbjct: 531 QIDPADL-RRNIGYVPQ----DPRL-------FYGTLRDNIALGAPYADDEEILRAAELA 578
Query: 461 SLNKFALGHYS--DREV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
+ +F H D ++ R+LSGG ++ ++ A ALL +PP++ LDEPTS MD +
Sbjct: 579 GVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEE 638
Query: 515 FLWTCIER--AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
+R G+ ++L +H + L ++ +M NG+
Sbjct: 639 ---RFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGR 676
Score = 60.7 bits (148), Expect = 1e-09
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER--AVSEGRCVILT 146
R+LSGG ++ ++ A ALL +PP++ LDEPTS MD + +R G+ ++L
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEE---RFKDRLKRWLAGKTLVLV 656
Query: 147 SHNMEECEALCTKLTIMVNGQ 167
+H + L ++ +M NG+
Sbjct: 657 THRTSLLD-LVDRIIVMDNGR 676
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 96.5 bits (241), Expect = 2e-22
Identities = 65/251 (25%), Positives = 114/251 (45%), Gaps = 31/251 (12%)
Query: 319 VSLEEDDVRKERERVEHGADSGDVLVVKRLFKIY--ANSKGTKPAVNQISFGVGRGECFG 376
V ++ +V K+ + S + KRL + A+ ISF + +GE G
Sbjct: 2 VVIKVSNVSKKFRIYHEKSYS----LKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVG 57
Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD---ALNDR 433
++G NGAGK+T K++ G KPTSG V + + P + +
Sbjct: 58 IIGHNGAGKSTLLKLIAGIYKPTSGKVKV-------TGKVA-------PLIELGAGFDPE 103
Query: 434 LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLSTAIAL 492
LT RE++ + + ++ V+E + +FA LG + D+ V+T S G +L+ ++A
Sbjct: 104 LTGRENIYLRGLILGLTRKEIDEKVDEII-EFAELGDFIDQPVKTYSSGMYARLAFSVAT 162
Query: 493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERA---VSEGRCVILTSHNMEECEALCTKLTI 549
P ++ LDE + D F C+ER V + + ++L SH++ + C +
Sbjct: 163 HVEPDILLLDEVLAVGDA---AFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIW 219
Query: 550 MVNGQFTCLGS 560
+ +GQ GS
Sbjct: 220 LEHGQIRMEGS 230
Score = 48.8 bits (117), Expect = 2e-06
Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 42 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA-LGHYSDREVRTLSGGNKRKLS 100
+ LT RE++ + + ++ V+E + +FA LG + D+ V+T S G +L+
Sbjct: 99 GFDPELTGRENIYLRGLILGLTRKEIDEKVDEII-EFAELGDFIDQPVKTYSSGMYARLA 157
Query: 101 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA---VSEGRCVILTSHNMEECEALC 157
++A P ++ LDE + D F C+ER V + + ++L SH++ + C
Sbjct: 158 FSVATHVEPDILLLDEVLAVGDA---AFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYC 214
Query: 158 TKLTIMVNGQFTCLGS 173
+ + +GQ GS
Sbjct: 215 DRAIWLEHGQIRMEGS 230
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 94.7 bits (236), Expect = 3e-22
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 12/191 (6%)
Query: 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI----RDSMDL--VRSYIGYCP 425
E G+ G +GAGK+T + + G KP G + N ++ R ++L + IG
Sbjct: 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL-NGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 426 QFDALNDRLTPREHLEF-YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 484
Q AL L RE+L F R RN + V+E L+ L H +R LSGG K+
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRIS---VDELLDLLGLDHLLNRYPAQLSGGEKQ 138
Query: 485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEAL 543
+++ A AL P L+ LDEP S +D R L +++ VI +H++ E E L
Sbjct: 139 RVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYL 198
Query: 544 CTKLTIMVNGQ 554
++ +M +G+
Sbjct: 199 ADRIVVMEDGR 209
Score = 71.6 bits (176), Expect = 3e-14
Identities = 45/136 (33%), Positives = 67/136 (49%), Gaps = 5/136 (3%)
Query: 34 IGYCPQFDALNDRLTPREHLEF-YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
IG Q AL L RE+L F R RN + V+E L+ L H +R LS
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRIS---VDELLDLLGLDHLLNRYPAQLS 133
Query: 93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNME 151
GG K++++ A AL P L+ LDEP S +D R L +++ VI +H++
Sbjct: 134 GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193
Query: 152 ECEALCTKLTIMVNGQ 167
E E L ++ +M +G+
Sbjct: 194 EAEYLADRIVVMEDGR 209
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 96.4 bits (240), Expect = 4e-22
Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 7/210 (3%)
Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-RDSM 414
G+K A+N I+F R ++G NGAGK+T F+ G +KPTSG+ + I ++++
Sbjct: 14 SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI 73
Query: 415 DLVRSYIGYCPQFDALNDRL---TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
VR ++G F +D++ T + + F + + V+ +L+ L
Sbjct: 74 REVRKFVGLV--FQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELR 131
Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 530
DR LSGG K++++ A + P ++ LDEPT+G+DP + L + G V
Sbjct: 132 DRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTV 191
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
I ++H ++ + + +M G+ G+
Sbjct: 192 IFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221
Score = 62.5 bits (152), Expect = 9e-11
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
V+ +L+ L DR LSGG K++++ A + P ++ LDEPT+G+DP + L
Sbjct: 118 VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177
Query: 131 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
+ G VI ++H ++ + + +M G+ G+
Sbjct: 178 DFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 93.6 bits (233), Expect = 6e-22
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 4/181 (2%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
S+G + +SF + GE + G NG GKTT ++L G ++P SG ++ +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
D I Y L L+ E+L F++ + + ++L L + D
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQ----RTIEDALAAVGLTGFEDLP 124
Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 534
LS G +R+L+ A L PL LDEPT+ +D L + ++ G V+LT+
Sbjct: 125 AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTT 184
Query: 535 H 535
H
Sbjct: 185 H 185
Score = 67.0 bits (164), Expect = 8e-13
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 7/137 (5%)
Query: 12 TLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 71
+ + +N+ Y+G+ P L L+ E+L F++ + +
Sbjct: 56 EVRWNGTALAEQRDEPHRNILYLGHLP---GLKPELSALENLHFWAAIHGGAQ----RTI 108
Query: 72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
++L L + D LS G +R+L+ A L PL LDEPT+ +D L
Sbjct: 109 EDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAG 168
Query: 132 CIERAVSEGRCVILTSH 148
+ ++ G V+LT+H
Sbjct: 169 LLRAHLARGGIVLLTTH 185
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 98.9 bits (247), Expect = 7e-22
Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 25/195 (12%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G + + +SF + RG+ ++G NGAGK+T K+L G + P SG + +++
Sbjct: 333 GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG-TVKVGETVK----- 386
Query: 417 VRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-GHYSDRE 474
IGY Q D L+ T E L V L +F G ++
Sbjct: 387 ----IGYFDQHRDELDPDKTVLEEL------SEGFPDGDEQEVRAYLGRFGFTGEDQEKP 436
Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVIL 532
V LSGG K +L A LL P L+ LDEPT+ +D + L E A+ + G V+L
Sbjct: 437 VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL----EEALLDFEG-TVLL 491
Query: 533 TSHNMEECEALCTKL 547
SH+ + + T++
Sbjct: 492 VSHDRYFLDRVATRI 506
Score = 93.9 bits (234), Expect = 3e-20
Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 38/230 (16%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
++ ++ L Y G +P + +S + GE GL+G NGAGK+T K+L G ++P SG
Sbjct: 3 MITLENLSLAY----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSG 58
Query: 402 N---------AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV 452
Y+ D V Y+ F L + L E Y+ + +
Sbjct: 59 EVTRPKGLRVGYLSQEPPLDPEKTVLDYV--IEGFGELRELLAELEEA--YALLADPDDE 114
Query: 453 LLNTI---------------VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP 497
LL + E+L DR V +LSGG +R+++ A ALL P
Sbjct: 115 LLAELEALLEELDGWTLEARAEEALLGLGFPD-EDRPVSSLSGGWRRRVALARALLEEPD 173
Query: 498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEECEALCTK 546
L+ LDEPT+ +D + +L E + VI+ SH+ + + T
Sbjct: 174 LLLLDEPTNHLDLESIEWL----EDYLKRYPGTVIVVSHDRYFLDNVATH 219
Score = 57.3 bits (139), Expect = 1e-08
Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Query: 34 IGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-GHYSDREVRTL 91
IGY Q D L+ T E L V L +F G ++ V L
Sbjct: 387 IGYFDQHRDELDPDKTVLEEL------SEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVL 440
Query: 92 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVILTSHN 149
SGG K +L A LL P L+ LDEPT+ +D + L E A+ + G V+L SH+
Sbjct: 441 SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL----EEALLDFEG-TVLLVSHD 495
Query: 150 MEECEALCTKL 160
+ + T++
Sbjct: 496 RYFLDRVATRI 506
Score = 54.6 bits (132), Expect = 1e-07
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-V 143
DR V +LSGG +R+++ A ALL P L+ LDEPT+ +D + +L E + V
Sbjct: 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWL----EDYLKRYPGTV 203
Query: 144 ILTSHNMEECEALCTK 159
I+ SH+ + + T
Sbjct: 204 IVVSHDRYFLDNVATH 219
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 93.3 bits (232), Expect = 1e-21
Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 6/211 (2%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--M 414
G+ A++ ++ V G LLG +G+GK+T +++ G +P SG + +D+ +
Sbjct: 11 GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNG---QDATRV 67
Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
IG+ Q AL LT R+++ F +R P + V E L L DR
Sbjct: 68 HARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY 127
Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV-ILT 533
LSGG +++++ A AL P ++ LDEP +D R+ L + + + E +
Sbjct: 128 PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFV 187
Query: 534 SHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+H+ EE + ++ +M NG+ +GS +
Sbjct: 188 THDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
Score = 64.8 bits (158), Expect = 8e-12
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
IG+ Q AL LT R+++ F +R P + V E L L DR LSG
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSG 133
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV-ILTSHNMEE 152
G +++++ A AL P ++ LDEP +D R+ L + + + E + +H+ EE
Sbjct: 134 GQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE 193
Query: 153 CEALCTKLTIMVNGQFTCLGSATHL 177
+ ++ +M NG+ +GS +
Sbjct: 194 AMEVADRIVVMSNGKIEQIGSPDEV 218
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 93.0 bits (231), Expect = 2e-21
Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 11/205 (5%)
Query: 367 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQ 426
+GE GLLG NGAGKTT + + G I P G V S +IGY PQ
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG----WRHIGYVPQ 56
Query: 427 FDALN-DRLTPREHLEFYSRVRNV-----PSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
D H R ++ P V V ++L + L +DR V LSG
Sbjct: 57 RHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSG 116
Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 540
G ++++ A AL P ++ LDEP +G+D + L G +++T+H++ +
Sbjct: 117 GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQA 176
Query: 541 EALCTKLTIMVNGQFTCLGSATHLK 565
A C ++ +++NG+ G+ L+
Sbjct: 177 MATCDRV-VLLNGRVIADGTPQQLQ 200
Score = 62.6 bits (152), Expect = 5e-11
Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 12/190 (6%)
Query: 2 GLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNLSYIGYCPQFDALN-DRLTPREHLEFYS 57
G TT + ++ L+ + KV G++P K +IGY PQ D H
Sbjct: 18 GKTTLLRAILGLIPPAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75
Query: 58 RVRNV-----PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI 112
R ++ P V V ++L + L +DR V LSGG ++++ A AL P ++
Sbjct: 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVL 135
Query: 113 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 172
LDEP +G+D + L G +++T+H++ + A C ++ +++NG+ G
Sbjct: 136 LLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRV-VLLNGRVIADG 194
Query: 173 SATHLKSKSM 182
+ L+ +
Sbjct: 195 TPQQLQDPAP 204
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 93.6 bits (233), Expect = 2e-21
Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 12/217 (5%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH---SIRDSMDLV 417
A+N +SF V GE L+G NGAGKTT ++TG +P G + +
Sbjct: 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIA 79
Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSRV-RNVPSVLLNTI-------VNESLNKFALGH 469
R+ IG Q + + LT RE+LE ++V + L + ++E L LG
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD 139
Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
DR LS G K+ L + L +P L+ LDEP +GM + ++++
Sbjct: 140 ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL-KSLAGKHS 198
Query: 530 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
+++ H+M + K+T++ G GS +++
Sbjct: 199 ILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235
Score = 57.3 bits (139), Expect = 4e-09
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 9/143 (6%)
Query: 45 DRLTPREHLEFYSRV-RNVPSVLLNTI-------VNESLNKFALGHYSDREVRTLSGGNK 96
+ LT RE+LE ++V + L + ++E L LG DR LS G K
Sbjct: 94 ENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153
Query: 97 RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL 156
+ L + L +P L+ LDEP +GM + ++++ +++ H+M +
Sbjct: 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL-KSLAGKHSILVVEHDMGFVREI 212
Query: 157 CTKLTIMVNGQFTCLGSATHLKS 179
K+T++ G GS +++
Sbjct: 213 ADKVTVLHEGSVLAEGSLDEVQN 235
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 92.3 bits (230), Expect = 3e-21
Identities = 57/190 (30%), Positives = 86/190 (45%), Gaps = 11/190 (5%)
Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI---KPTSGNAYVMNHSI 410
N +N +S V G+ +LG +G+GKTT ++G + TSG
Sbjct: 15 NWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74
Query: 411 RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI-----VNESLNKF 465
D + + Y Q D L LT RE L + + +R P + I + L
Sbjct: 75 --KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRL-PRKSSDAIRKKRVEDVLLRDL 131
Query: 466 ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
AL V+ +SGG +R++S A+ LL +P ++ LDEPTSG+D L + + +
Sbjct: 132 ALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR 191
Query: 526 EGRCVILTSH 535
R VILT H
Sbjct: 192 RNRIVILTIH 201
Score = 76.2 bits (188), Expect = 1e-15
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 22 GSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI-----VNESLN 76
G D+ + Y Q D L LT RE L + + +R P + I + L
Sbjct: 71 GQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRL-PRKSSDAIRKKRVEDVLLR 129
Query: 77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 136
AL V+ +SGG +R++S A+ LL +P ++ LDEPTSG+D L + + +
Sbjct: 130 DLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQL 189
Query: 137 VSEGRCVILTSH 148
R VILT H
Sbjct: 190 ARRNRIVILTIH 201
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 95.1 bits (237), Expect = 5e-21
Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 6/200 (3%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-----RDSMD 415
VN S V GE F ++GL+G+GK+T ++L I+PT G V I + +
Sbjct: 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRE 102
Query: 416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV 475
L R I Q AL T E++ F V+ VP E+L L Y+D+
Sbjct: 103 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP 162
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 534
LSGG ++++ A AL +P ++ +DE S +DP R + + ++ + ++ +
Sbjct: 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT 222
Query: 535 HNMEECEALCTKLTIMVNGQ 554
H+++E + ++ IM +G+
Sbjct: 223 HDLDEALRIGDRIAIMKDGE 242
Score = 58.9 bits (143), Expect = 2e-09
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 51 EHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP 110
E++ F V+ VP E+L L Y+D+ LSGG ++++ A AL +P
Sbjct: 125 ENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPD 184
Query: 111 LIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 167
++ +DE S +DP R + + ++ + ++ +H+++E + ++ IM +G+
Sbjct: 185 ILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGE 242
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 91.1 bits (227), Expect = 5e-21
Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 9/199 (4%)
Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
+K + K + G K ++ ++ + +G+ + ++G +G+GK+T ++ K SG Y
Sbjct: 1 LKNISKKF----GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVY 56
Query: 405 VMNHSI-----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
+ + + R +GY Q AL + T E+L+ + + +
Sbjct: 57 LNGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKK 116
Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
E+L K L +++ LSGG +++++ A A+L PPLI DEPT +DP R +
Sbjct: 117 EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 520 IERAVSEGRCVILTSHNME 538
+ EG+ +I+ +H+ E
Sbjct: 177 LLELNDEGKTIIIVTHDPE 195
Score = 64.6 bits (158), Expect = 6e-12
Identities = 35/120 (29%), Positives = 60/120 (50%)
Query: 32 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTL 91
+GY Q AL + T E+L+ + + + E+L K L +++ L
Sbjct: 76 EKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYEL 135
Query: 92 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
SGG +++++ A A+L PPLI DEPT +DP R + + EG+ +I+ +H+ E
Sbjct: 136 SGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 90.6 bits (225), Expect = 6e-21
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 6/181 (3%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
+ + + +SF + GE + G NG+GKTT ++L G P +G + +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
D + + Y + L+ E+L F+ + V E+L + L + DR
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVE------EALARVGLNGFEDRP 122
Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 534
V LS G +R+++ A LL PL LDEPT+ +D + + G V+LT+
Sbjct: 123 VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTT 182
Query: 535 H 535
H
Sbjct: 183 H 183
Score = 65.6 bits (160), Expect = 3e-12
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 13 LLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 72
+LL + +I + L Y+G+ P + L+ E+L F+ + V
Sbjct: 57 VLLNGGPLDFQRDSIARGLLYLGHAP---GIKTTLSVLENLRFWHADHSDEQVE------ 107
Query: 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 132
E+L + L + DR V LS G +R+++ A LL PL LDEPT+ +D
Sbjct: 108 EALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEA 167
Query: 133 IERAVSEGRCVILTSH 148
+ + G V+LT+H
Sbjct: 168 MAGHCARGGMVVLTTH 183
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 88.1 bits (219), Expect = 6e-21
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 386 TTTFKMLTGAIKPTSGNAYVMNHSIRD--SMDLVRSYIGYCPQFDALNDRLTPREHLEFY 443
+T K++TG ++PTSG + S L+R IG Q L LT RE+L F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF- 59
Query: 444 SRVRNVPSVLLNTIVNESLNKFALGHYSDRE-VRTLSGGNKRKLSTAIALLGNPPLIFLD 502
+ + E+L + L + DRE V TLSGG K++++ A ALL P L+ LD
Sbjct: 60 ----GLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLD 115
Query: 503 EPTS 506
EPT+
Sbjct: 116 EPTA 119
Score = 68.5 bits (168), Expect = 5e-14
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE-VRTLS 92
IG Q L LT RE+L F + + E+L + L + DRE V TLS
Sbjct: 38 IGVVFQDPQLFPELTVRENLFF-----GLRDKEADARAEEALERVGLPDFLDREPVGTLS 92
Query: 93 GGNKRKLSTAIALLGNPPLIFLDEPTS 119
GG K++++ A ALL P L+ LDEPT+
Sbjct: 93 GGQKQRVAIARALLKKPKLLLLDEPTA 119
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 91.6 bits (228), Expect = 8e-21
Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 26/231 (11%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
+L V+ L K+Y N K A+ I+ + GE ++G +GAGK+T + + ++P+SG
Sbjct: 1 MLEVENLSKVYPNGK---QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSG 57
Query: 402 NAYVMNHSIRD----SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV--LLN 455
+ + I + +R IG Q L +RLT E++ + R+ P+ LL
Sbjct: 58 SILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLG 116
Query: 456 T-------IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 508
+L + L + + LSGG +++++ A AL P LI DEP + +
Sbjct: 117 RFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASL 176
Query: 509 DPGARR-----FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
DP + E +G VI+ H ++ + ++ + G+
Sbjct: 177 DPKTSKQVMDYLKRINKE----DGITVIINLHQVDLAKKYADRIVGLKAGE 223
Score = 51.9 bits (125), Expect = 2e-07
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR----- 127
+L + L + + LSGG +++++ A AL P LI DEP + +DP +
Sbjct: 128 SALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY 187
Query: 128 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
E +G VI+ H ++ + ++ + G+
Sbjct: 188 LKRINKE----DGITVIINLHQVDLAKKYADRIVGLKAGE 223
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 89.9 bits (224), Expect = 1e-20
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 6/180 (3%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G + + +SF + GE L G NG+GKTT +++ G + P +G + I D
Sbjct: 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD-- 70
Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
V Y +A+ LT E+LEF++ + +L L +
Sbjct: 71 VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFG 126
Query: 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 536
LS G KR+++ A L+ N P+ LDEPT+ +D A I +++G VI +H
Sbjct: 127 YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHI 186
Score = 64.1 bits (157), Expect = 9e-12
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 8/149 (5%)
Query: 5 TTPKRVVTLLLT----TQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR 60
TT R++ LL T K+ G + Y +A+ LT E+LEF++
Sbjct: 42 TTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL 101
Query: 61 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 120
+ +L L + LS G KR+++ A L+ N P+ LDEPT+
Sbjct: 102 GGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157
Query: 121 MDPGARRFLWTCIERAVSEGRCVILTSHN 149
+D A I +++G VI +H
Sbjct: 158 LDAAAVALFAELIRAHLAQGGIVIAATHI 186
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 90.4 bits (225), Expect = 1e-20
Identities = 60/219 (27%), Positives = 111/219 (50%), Gaps = 6/219 (2%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ ++ + K Y G A++ +S + GE F LLG +G GKTT +++ G PTSG
Sbjct: 1 IELENVSKFY----GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGE 56
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
+ I + + + + Q AL LT E++ F R++ +P + V E+L
Sbjct: 57 ILLDGKDITN-LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
+ L Y++R+ LSGG +++++ A AL+ P ++ LDEP +D R+ + ++R
Sbjct: 116 DLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKR 175
Query: 523 AVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
E G + +H+ EE + ++ +M G+ +G+
Sbjct: 176 LQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
Score = 48.8 bits (117), Expect = 2e-06
Identities = 37/133 (27%), Positives = 71/133 (53%), Gaps = 1/133 (0%)
Query: 42 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 101
AL LT E++ F R++ +P + V E+L+ L Y++R+ LSGG +++++
Sbjct: 82 ALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAI 141
Query: 102 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKL 160
A AL+ P ++ LDEP +D R+ + ++R E G + +H+ EE + ++
Sbjct: 142 ARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRI 201
Query: 161 TIMVNGQFTCLGS 173
+M G+ +G+
Sbjct: 202 AVMNKGKIQQIGT 214
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 92.0 bits (229), Expect = 3e-20
Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 13/218 (5%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
L ++ + K + G AV+ IS + +GE LLG +G GKTT +M+ G +P+SG
Sbjct: 5 ALEIRNVSKSF----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 402 NAYVMNHSIRDSMDLVRSY---IGYCPQFDALNDRLTPREHLEFYSRVRNVPSV-LLNTI 457
+ I D V IG Q AL +T E++ F +VR +
Sbjct: 61 EILLDGEDITD----VPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKAR 116
Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
V E+L L ++DR+ LSGG +++++ A AL+ P ++ LDEP S +D R +
Sbjct: 117 VEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMR 176
Query: 518 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
++ E G + +H+ EE A+ ++ +M +G+
Sbjct: 177 KELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGR 214
Score = 50.7 bits (122), Expect = 1e-06
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
V E+L L ++DR+ LSGG +++++ A AL+ P ++ LDEP S +D R +
Sbjct: 117 VEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMR 176
Query: 131 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 167
++ E G + +H+ EE A+ ++ +M +G+
Sbjct: 177 KELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGR 214
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 89.5 bits (223), Expect = 3e-20
Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 22/228 (9%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ V+ L K Y N K A+ +S + GE L+G +GAGK+T + L G ++PTSG+
Sbjct: 1 IEVENLSKTYPNGK---KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGS 57
Query: 403 AYVMNHSI----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458
+ I ++ +R IG Q L +RL+ E++ R+ ++
Sbjct: 58 VLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENV-LSGRLGRRS--TWRSLF 114
Query: 459 N-----------ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 507
+L + L + + LSGG +++++ A AL+ P LI DEP +
Sbjct: 115 GLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS 174
Query: 508 MDP-GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
+DP +R+ + EG VI++ H ++ ++ + +G+
Sbjct: 175 LDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
Score = 47.2 bits (113), Expect = 8e-06
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWT 131
+L + L + + LSGG +++++ A AL+ P LI DEP + +DP +R+ +
Sbjct: 127 AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL 186
Query: 132 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
EG VI++ H ++ ++ + +G+
Sbjct: 187 LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 90.2 bits (224), Expect = 4e-20
Identities = 65/217 (29%), Positives = 108/217 (49%), Gaps = 13/217 (5%)
Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
VK L Y K +N +SF V +GE ++G NG+GK+TT +++ G ++ SG
Sbjct: 7 VKNLTFKY-KEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65
Query: 405 VMNHSI-RDSMDLVRSYIGYC---P--QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458
+ + +++ +R IG P QF T + + F + +P + V
Sbjct: 66 IDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA----TVEDDVAFGLENKGIPHEEMKERV 121
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
NE+L + + +RE LSGG K++++ A A+ P +I LDE TS +DP R L
Sbjct: 122 NEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK 181
Query: 519 CIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
I+ + VI +H+++E AL ++ +M NGQ
Sbjct: 182 TIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQ 217
Score = 62.1 bits (151), Expect = 1e-10
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
VNE+L + + +RE LSGG K++++ A A+ P +I LDE TS +DP R L
Sbjct: 121 VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180
Query: 131 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGN 189
I+ + VI +H+++E AL ++ +M NGQ + L S+ L
Sbjct: 181 KTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELFSRGNDL----L 235
Query: 190 DLGRGDPVRSELSRALN 206
LG P + L ++L
Sbjct: 236 QLGLDIPFTTSLVQSLR 252
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 88.4 bits (220), Expect = 7e-20
Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 4/187 (2%)
Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI----R 411
G + A+ +SF + +GE L G +GAGK+T K++ G +PT G V H +
Sbjct: 12 PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG 71
Query: 412 DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
+ +R IG Q L T E++ RV P + V+E L+ L H +
Sbjct: 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 531
LSGG +++++ A A++ P ++ DEPT +DP + E G V+
Sbjct: 132 RALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVL 191
Query: 532 LTSHNME 538
+ +H++E
Sbjct: 192 MATHDLE 198
Score = 48.0 bits (115), Expect = 3e-06
Identities = 32/118 (27%), Positives = 54/118 (45%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
IG Q L T E++ RV P + V+E L+ L H + LSG
Sbjct: 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSG 140
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
G +++++ A A++ P ++ DEPT +DP + E G V++ +H++E
Sbjct: 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE 198
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 89.4 bits (222), Expect = 8e-20
Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 9/198 (4%)
Query: 349 FKIYANSKGT-KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 407
+K +N + T K A++ ++ V +GE +LG NG+GK+T K + + P+ G YV
Sbjct: 12 YKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDG 71
Query: 408 HSIRDSMDL--VRSYIGYCPQFDALNDRLTP---REHLEFYSRVRNVPSVLLNTIVNESL 462
D +L +R+ G F ++++ E + F +P + V+ESL
Sbjct: 72 LDTSDEENLWDIRNKAGMV--FQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESL 129
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
K + Y LSGG K++++ A L P I DEPT+ +DP RR + I+
Sbjct: 130 KKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKE 189
Query: 523 AVSE-GRCVILTSHNMEE 539
+ G +IL +H MEE
Sbjct: 190 LNKKYGITIILITHYMEE 207
Score = 55.1 bits (133), Expect = 3e-08
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 62 VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 121
+P + V+ESL K + Y LSGG K++++ A L P I DEPT+ +
Sbjct: 116 IPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAML 175
Query: 122 DPGARRFLWTCIERAVSE-GRCVILTSHNMEE 152
DP RR + I+ + G +IL +H MEE
Sbjct: 176 DPSGRREVVNTIKELNKKYGITIILITHYMEE 207
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 86.5 bits (215), Expect = 9e-20
Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 42/213 (19%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L V+ + Y P + +SF + GE ++G +G+GK+T +++ G ++PTSG
Sbjct: 1 LEVENVSFRYPG--AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGR 58
Query: 403 AYVMNHSIRD-SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
+ I + + ++GY PQ D L +I E+
Sbjct: 59 VRLDGADISQWDPNELGDHVGYLPQDDEL----------------------FSGSI-AEN 95
Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
+ LSGG +++L A AL GNP ++ LDEP S +D R L I
Sbjct: 96 I---------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140
Query: 522 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
+ G I+ +H E + ++ ++ +G+
Sbjct: 141 ALKAAGATRIVIAHRPETLAS-ADRILVLEDGR 172
Score = 55.3 bits (134), Expect = 5e-09
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++L A AL GNP ++ LDEP S +D R L I + G I+ +H
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156
Query: 151 EECEALCTKLTIMVNGQ 167
E + ++ ++ +G+
Sbjct: 157 ETLAS-ADRILVLEDGR 172
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 89.0 bits (221), Expect = 1e-19
Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 11/210 (5%)
Query: 352 YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 411
Y+ GT+ A+ I+F +GE LLG NGAGK+T F G +KPTSG + I+
Sbjct: 9 YSYPDGTE-ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIK 67
Query: 412 -DSMDL--VRSYIGYCPQFDALNDRL---TPREHLEFYSRVRNVPSVLLNTIVNESLNKF 465
D L VR +G F +D+L T E + F + + V E+L
Sbjct: 68 YDKKSLLEVRKTVGIV--FQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAV 125
Query: 466 ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAV 524
+ + ++ LSGG K++++ A L P +I LDEPTSG+DP GA + + +
Sbjct: 126 GMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN- 184
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
EG +I+++H+++ K+ +M +G+
Sbjct: 185 KEGITIIISTHDVDLVPVYADKVYVMSDGK 214
Score = 53.9 bits (130), Expect = 6e-08
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFL 129
V E+L + + ++ LSGG K++++ A L P +I LDEPTSG+DP GA + +
Sbjct: 118 VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIM 177
Query: 130 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
+ EG +I+++H+++ K+ +M +G+
Sbjct: 178 KLLYDLN-KEGITIIISTHDVDLVPVYADKVYVMSDGK 214
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 92.7 bits (231), Expect = 1e-19
Identities = 56/230 (24%), Positives = 92/230 (40%), Gaps = 42/230 (18%)
Query: 333 VEHGADSGDVLVVKRLFKI------YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKT 386
E D + + K +I + P + +S + GE ++G +G+GK+
Sbjct: 454 PEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKS 513
Query: 387 TTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR 445
T K+L G KP G + + D + +R +GY Q L + RE++
Sbjct: 514 TLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIAL--- 569
Query: 446 VRNVPSVLLNTIVN--------ESLNKFALGHYSDREVR----TLSGGNKRKLSTAIALL 493
P I+ E + +G+ D V LSGG +++L+ A ALL
Sbjct: 570 --GNPEATDEEIIEAAQLAGAHEFIENLPMGY--DTPVGEGGANLSGGQRQRLALARALL 625
Query: 494 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-------GRCVILTSHN 536
P ++ LDE TS +DP E + + GR VI+ +H
Sbjct: 626 SKPKILLLDEATSALDPE--------TEAIILQNLLQILQGRTVIIIAHR 667
Score = 51.1 bits (123), Expect = 1e-06
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 15/66 (22%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-------GRCV 143
LSGG +++L+ A ALL P ++ LDE TS +DP E + + GR V
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPE--------TEAIILQNLLQILQGRTV 661
Query: 144 ILTSHN 149
I+ +H
Sbjct: 662 IIIAHR 667
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 89.0 bits (221), Expect = 1e-19
Identities = 65/229 (28%), Positives = 111/229 (48%), Gaps = 18/229 (7%)
Query: 345 VKRLFKIYANSKGT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
++ L IY +GT K A++ ++ + GE GL+G G+GK+T + L G +KPTSG
Sbjct: 5 IENLTHIY--MEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 402 NAYVMNHSIRD---SMDLVRSYIG----YCPQFDALNDRLTPREHLEFYSRVRNVPSVLL 454
+ I D + +R +G Y P++ + T + + F + +
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQY-PEYQLFEE--TIEKDIAFGPINLGLSEEEI 119
Query: 455 NTIVNESLNKFALGH--YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
V ++N L + Y D+ LSGG KR+++ A + P ++ LDEPT+G+DP
Sbjct: 120 ENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
Query: 513 RRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
R + I+ E +IL SH+ME+ L ++ +M G+ G+
Sbjct: 180 RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
Score = 60.1 bits (146), Expect = 6e-10
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 25/151 (16%)
Query: 26 TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH--Y 83
TI+K+ I + P L++ E +RV+ ++N L + Y
Sbjct: 100 TIEKD---IAFGPINLGLSEE-------EIENRVK------------RAMNIVGLDYEDY 137
Query: 84 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRC 142
D+ LSGG KR+++ A + P ++ LDEPT+G+DP R + I+ E
Sbjct: 138 KDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMT 197
Query: 143 VILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
+IL SH+ME+ L ++ +M G+ G+
Sbjct: 198 IILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 86.4 bits (215), Expect = 2e-19
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 364 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS---Y 420
+SF + GE + G NGAGKT+ ++L G +P +G IR D Y
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
+G+ P + LT E+L FY R+ + + E+L + L + D VR LS
Sbjct: 79 LGHQP---GIKTELTALENLRFYQRLHGPGD---DEALWEALAQVGLAGFEDVPVRQLSA 132
Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
G +R+++ A L PL LDEP + +D L + + +G VILT+H
Sbjct: 133 GQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
Score = 62.9 bits (154), Expect = 2e-11
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 30 NLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 89
+L Y+G+ P + LT E+L FY R+ + + E+L + L + D VR
Sbjct: 75 DLLYLGHQP---GIKTELTALENLRFYQRLHGPGD---DEALWEALAQVGLAGFEDVPVR 128
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
LS G +R+++ A L PL LDEP + +D L + + +G VILT+H
Sbjct: 129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 87.5 bits (218), Expect = 2e-19
Identities = 65/226 (28%), Positives = 98/226 (43%), Gaps = 13/226 (5%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
+L V+ L Y A+ +S V RGE LLG NGAGKTT K + G ++P SG
Sbjct: 3 MLEVENLSAGYGKI----QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSG 58
Query: 402 NAYVMNHSIRD--SMDLVRSYIGYCPQFDALNDRLTPREHLE--FYSRVRNVPSVLLNTI 457
I + R I Y P+ + RLT E+L Y+R
Sbjct: 59 RIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ---ERD 115
Query: 458 VNESLNKF-ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
+ E F L ++ TLSGG ++ L+ A AL+ P L+ LDEP+ G+ P +
Sbjct: 116 LEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 175
Query: 517 WTCIER-AVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 561
+ I+ G ++L N + + ++ NG+ G+A
Sbjct: 176 FEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTA 221
Score = 43.2 bits (103), Expect = 1e-04
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 7/145 (4%)
Query: 34 IGYCPQFDALNDRLTPREHLE--FYSRVRNVPSVLLNTIVNESLNKF-ALGHYSDREVRT 90
I Y P+ + RLT E+L Y+R + E F L ++ T
Sbjct: 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ---ERDLEEVYELFPRLKERRNQRAGT 136
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHN 149
LSGG ++ L+ A AL+ P L+ LDEP+ G+ P ++ I+ G ++L N
Sbjct: 137 LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQN 196
Query: 150 MEECEALCTKLTIMVNGQFTCLGSA 174
+ + ++ NG+ G+A
Sbjct: 197 ARFALEIADRGYVLENGRIVLSGTA 221
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 86.5 bits (215), Expect = 2e-19
Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 6/197 (3%)
Query: 347 RLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 406
+ G A++ +S + +GE L G +GAGKTT K+L GA+ P+ G +
Sbjct: 3 EFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIA 62
Query: 407 NHSI---RDS-MDLVRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
+ R + L+R IG Q F L DR T E++ VR + V +
Sbjct: 63 GEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR-TVYENVALPLEVRGKKEREIQRRVGAA 121
Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
L + L H +D LSGG +++++ A A++ +PPL+ DEPT +DP + ++
Sbjct: 122 LRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLK 181
Query: 522 RAVSEGRCVILTSHNME 538
R G VI+ +H++
Sbjct: 182 RLNKRGTTVIVATHDLS 198
Score = 51.1 bits (123), Expect = 3e-07
Identities = 27/94 (28%), Positives = 48/94 (51%)
Query: 58 RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 117
VR + V +L + L H +D LSGG +++++ A A++ +PPL+ DEP
Sbjct: 105 EVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164
Query: 118 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
T +DP + ++R G VI+ +H++
Sbjct: 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 84.3 bits (209), Expect = 6e-19
Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 37/198 (18%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 418
+ + +S + +GE LLG +G+GK+T ++LTG +KP G + + D +
Sbjct: 15 QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALS 74
Query: 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTL 478
S I Q R +L F + +RN LG R
Sbjct: 75 SLISVLNQ----------RPYL-FDTTLRN-----------------NLG-------RRF 99
Query: 479 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
SGG +++L+ A LL + P++ LDEPT G+DP R L + I V + + +I +H++
Sbjct: 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKDKTLIWITHHLT 158
Query: 539 ECEALCTKLTIMVNGQFT 556
E + K+ + NG+
Sbjct: 159 GIEHM-DKILFLENGKII 175
Score = 51.9 bits (125), Expect = 1e-07
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
R SGG +++L+ A LL + P++ LDEPT G+DP R L + I V + + +I +H
Sbjct: 97 RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKDKTLIWITH 155
Query: 149 NMEECEALCTKLTIMVNGQFT 169
++ E + K+ + NG+
Sbjct: 156 HLTGIEHM-DKILFLENGKII 175
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 89.1 bits (222), Expect = 9e-19
Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 25/228 (10%)
Query: 339 SGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 398
L ++ + K + A + +S V +GE LLG NGAGK+T K+L G +P
Sbjct: 1 MEPALEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP 56
Query: 399 TSGNAYV--MNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT 456
SG V I+ D +R IG Q L LT E++ +
Sbjct: 57 DSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQ 116
Query: 457 IVNE----------SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
++ D +V LS G ++++ AL L+ LDEPT+
Sbjct: 117 ARARIKELSERYGLPVDP-------DAKVADLSVGEQQRVEILKALYRGARLLILDEPTA 169
Query: 507 GMDPG-ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 553
+ P A + R +EG+ +I +H ++E A+ ++T++ G
Sbjct: 170 VLTPQEADELFEI-LRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRG 216
Score = 71.4 bits (176), Expect = 3e-13
Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 19/230 (8%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
VL V+ L + AV +SF V GE G+ G+ G G++ + ++G KP SG
Sbjct: 257 VLEVEDL-SVKDRRGV--TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASG 313
Query: 402 NAYVMNHSIR---DSMDLVRSYIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLN 455
+ + + R + Y P+ D L L R P
Sbjct: 314 RILLNGKDVLGRLSPRERRRLGLAYVPE-DRHGHGLVLDLSLAENLVLGRHDKKPFSRGG 372
Query: 456 TIVNESLNKFALG---HYSDR------EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
+ ++ KFA + R R+LSGGN++KL A L P L+ +PT
Sbjct: 373 FLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTR 432
Query: 507 GMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT 556
G+D GA F+ + G+ V+L S +++E L ++ ++ G+
Sbjct: 433 GLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482
Score = 52.5 bits (127), Expect = 4e-07
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 88 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 147
R+LSGGN++KL A L P L+ +PT G+D GA F+ + G+ V+L S
Sbjct: 401 ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLIS 460
Query: 148 HNMEECEALCTKLTIMVNGQFT 169
+++E L ++ ++ G+
Sbjct: 461 EDLDEILELSDRIAVIYEGRIV 482
Score = 48.3 bits (116), Expect = 7e-06
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWTCIERAVSEGRCV 143
D +V LS G ++++ AL L+ LDEPT+ + P A + R +EG+ +
Sbjct: 135 DAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEI-LRRLAAEGKTI 193
Query: 144 ILTSHNMEECEALCTKLTIMVNG 166
I +H ++E A+ ++T++ G
Sbjct: 194 IFITHKLKEVMAIADRVTVLRRG 216
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 84.8 bits (210), Expect = 1e-18
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 4/186 (2%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV----MNHSIRD 412
A++ I+ + GE L+G +GAGK+T K++ PTSG V ++
Sbjct: 12 NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGR 71
Query: 413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 472
++ +R IG Q L E++ F V VP + V +L L H
Sbjct: 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR 131
Query: 473 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 532
LSGG +++++ A A++ +P ++ DEPT +DP + +++ G V++
Sbjct: 132 ALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVV 191
Query: 533 TSHNME 538
+H E
Sbjct: 192 ATHAKE 197
Score = 47.8 bits (114), Expect = 4e-06
Identities = 26/105 (24%), Positives = 48/105 (45%)
Query: 47 LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 106
E++ F V VP + V +L L H LSGG +++++ A A++
Sbjct: 93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIV 152
Query: 107 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
+P ++ DEPT +DP + +++ G V++ +H E
Sbjct: 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE 197
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 84.9 bits (210), Expect = 1e-18
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 5/178 (2%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMD 415
G +N IS V GE + G +G GK+T K++ I PTSG + +
Sbjct: 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE 73
Query: 416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS-DRE 474
R + YC Q AL T ++L F ++RN + L +FAL +
Sbjct: 74 AYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKN 130
Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 532
+ LSGG K++++ L P ++ LDE TS +D +R + I R V E +L
Sbjct: 131 ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVL 188
Score = 50.2 bits (120), Expect = 7e-07
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS-DREVRTLS 92
+ YC Q AL T ++L F ++RN + L +FAL + + LS
Sbjct: 79 VSYCAQTPALFGD-TVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELS 135
Query: 93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
GG K++++ L P ++ LDE TS +D +R + I R V E +L
Sbjct: 136 GGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVL 188
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 85.6 bits (212), Expect = 1e-18
Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 5/193 (2%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 418
+ A+ +S + GE +LG +G GKTT ++ G + P+ G+ + I
Sbjct: 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP----G 73
Query: 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTL 478
+ G Q +AL L +++ F ++R + I ++ L L + + L
Sbjct: 74 AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQL 133
Query: 479 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC-IERAVSEGRCVILTSHNM 537
SGG ++++ A AL P L+ LDEP +D R + ++ G+ V+L +H++
Sbjct: 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI 193
Query: 538 EECEALCTKLTIM 550
EE L T+L ++
Sbjct: 194 EEALFLATRLVVL 206
Score = 65.5 bits (160), Expect = 6e-12
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 39 QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK 98
Q +AL L +++ F ++R + I ++ L L + + LSGG +++
Sbjct: 81 QNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQR 140
Query: 99 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC-IERAVSEGRCVILTSHNMEECEALC 157
+ A AL P L+ LDEP +D R + ++ G+ V+L +H++EE L
Sbjct: 141 VGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLA 200
Query: 158 TKLTIM 163
T+L ++
Sbjct: 201 TRLVVL 206
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 89.0 bits (221), Expect = 1e-18
Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 13/231 (5%)
Query: 346 KRLFKIYANSKGTKPAVNQISFGVGR-GECFGLLGLNGAGKTTTFKMLTGAIKP-TSGNA 403
RL + + K + +S GV + GE ++G +GAGKTT L G+
Sbjct: 25 SRLRGCFCRERPRKHLLKNVS-GVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSG 83
Query: 404 YVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLLNTIVNE 460
V+ + + +R+ Y Q D LT REHL F + +R V V+E
Sbjct: 84 SVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDE 143
Query: 461 SLNKFALGHYSD------REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
L L ++ V+ LSGG +++L+ A LL +PPL+F DEPTSG+D
Sbjct: 144 VLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAY 203
Query: 515 FLWTCIERAVSEGRCVILTSHN-MEECEALCTKLTIMVNGQFTCLGSATHL 564
+ ++ +G+ +I T H E L K+ +M G+ LGS
Sbjct: 204 SVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254
Score = 69.3 bits (170), Expect = 2e-12
Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 35 GYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLLNTIVNESLNKFALGHYSD------ 85
Y Q D LT REHL F + +R V V+E L L ++
Sbjct: 102 AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVP 161
Query: 86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
V+ LSGG +++L+ A LL +PPL+F DEPTSG+D + ++ +G+ +I
Sbjct: 162 GRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIIC 221
Query: 146 TSHN-MEECEALCTKLTIMVNGQFTCLGSATHL 177
T H E L K+ +M G+ LGS
Sbjct: 222 TIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 86.1 bits (214), Expect = 2e-18
Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 30/237 (12%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
+L VK L + G AV+ +SF + +GE G++G +G+GK+ K + G +
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK--P 58
Query: 402 NAYVMNHSIR-DSMDLVR-----------SYIGYCPQ--FDALNDRLTPREHL-EFYSRV 446
NA ++ I D DL+ I Q +LN +T + + E
Sbjct: 59 NARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH 118
Query: 447 RNVPSV--LLNTIVNESLNKFALGHYSDREVR------TLSGGNKRKLSTAIALLGNPPL 498
S + E L + D E R LSGG ++++ A+AL NP L
Sbjct: 119 GKGLSKKEAKERAI-ELLELVGI---PDPERRLKSYPHELSGGMRQRVMIAMALALNPKL 174
Query: 499 IFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
+ DEPT+ +D + + ++ E G +IL +H++ + ++ +M G+
Sbjct: 175 LIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGR 231
Score = 53.0 bits (128), Expect = 2e-07
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149
LSGG ++++ A+AL NP L+ DEPT+ +D + + ++ E G +IL +H+
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHD 213
Query: 150 MEECEALCTKLTIMVNGQ 167
+ + ++ +M G+
Sbjct: 214 LGVVAEIADRVAVMYAGR 231
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 83.8 bits (208), Expect = 5e-18
Identities = 60/235 (25%), Positives = 95/235 (40%), Gaps = 43/235 (18%)
Query: 339 SGDVLVVKRLFKIYANSKGTKP-----AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 393
+L VK L K + KG AV+ +SF + GE GL+G +G GK+T +++
Sbjct: 1 MEPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL 60
Query: 394 GAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV 452
G +PTSG I S + R + E LE +V
Sbjct: 61 GLEEPTSGEILFEGKDITKLSKEERRERV---------------LELLE---KV------ 96
Query: 453 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
L + L Y E LSGG ++++ A AL NP LI DEP S +D
Sbjct: 97 --------GLPEEFLYRY-PHE---LSGGQRQRIGIARALALNPKLIVADEPVSALDVSV 144
Query: 513 RRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
+ + ++ E G + SH++ + ++ +M G+ +G + S
Sbjct: 145 QAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199
Score = 38.0 bits (89), Expect = 0.009
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 143
R LSGG ++++ A AL NP LI DEP S +D + + ++ E G
Sbjct: 104 YRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTY 163
Query: 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 179
+ SH++ + ++ +M G+ +G + S
Sbjct: 164 LFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 83.6 bits (207), Expect = 7e-18
Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 13/187 (6%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL--VR 418
+ +SF + +G+ ++G NG+GK+T K++ G K SG + N +I + +R
Sbjct: 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI-TDDNFEKLR 82
Query: 419 SYIGYC---P--QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 473
+IG P QF + LE ++ VP ++ V+E+L + + +D
Sbjct: 83 KHIGIVFQNPDNQFVGSIVKYDVAFGLENHA----VPYDEMHRRVSEALKQVDMLERADY 138
Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533
E LSGG K++++ A L NP +I LDE TS +DP AR+ L + + SE I++
Sbjct: 139 EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIIS 198
Query: 534 -SHNMEE 539
+H++ E
Sbjct: 199 ITHDLSE 205
Score = 58.2 bits (141), Expect = 2e-09
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 62 VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 121
VP ++ V+E+L + + +D E LSGG K++++ A L NP +I LDE TS +
Sbjct: 114 VPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSML 173
Query: 122 DPGARRFLWTCIERAVSEGRCVILT-SHNMEE 152
DP AR+ L + + SE I++ +H++ E
Sbjct: 174 DPDARQNLLDLVRKVKSEHNITIISITHDLSE 205
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 82.1 bits (203), Expect = 8e-18
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 18/205 (8%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH----------S 409
P + +S V GEC L G +GAGK+T K L P SG V H S
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV-RHEGAWVDLAQAS 80
Query: 410 IRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH 469
R+ +++ R IGY QF + R++ E + R VP E L + +
Sbjct: 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNI-- 138
Query: 470 YSDR----EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
+R T SGG +++++ A + + P++ LDEPT+ +D R+ + I A +
Sbjct: 139 -PERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA 197
Query: 526 EGRCVILTSHNMEECEALCTKLTIM 550
G +I H+ E E + ++ +
Sbjct: 198 RGAALIGIFHDEEVRELVADRVMDV 222
Score = 46.2 bits (110), Expect = 1e-05
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 149
T SGG +++++ A + + P++ LDEPT+ +D R+ + I A + G +I H+
Sbjct: 149 TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD 208
Query: 150 MEECEALCTKLTIM 163
E E + ++ +
Sbjct: 209 EEVRELVADRVMDV 222
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 84.5 bits (209), Expect = 9e-18
Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 23/236 (9%)
Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
+ + K++ T A+N +S V G+ +G++G +GAGK+T + + +PTSG+
Sbjct: 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI 63
Query: 405 VMNHSIRDSMDLV----------RSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVL 453
V D DL R IG Q F+ L+ R T ++ + N P
Sbjct: 64 V------DGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR-TVFGNVALPLELDNTPKDE 116
Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
+ V E L LG D LSGG K++++ A AL NP ++ DE TS +DP
Sbjct: 117 IKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 514 RFLWTC---IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
+ + I R + G ++L +H M+ + +C + ++ NG+ G+ + + S
Sbjct: 177 QSILELLKEINRRL--GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230
Score = 58.4 bits (141), Expect = 4e-09
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 23 SNPTIDKNLSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG 81
SN + K IG Q F+ L+ R T ++ + N P + V E L LG
Sbjct: 73 SNSELTKARRQIGMIFQHFNLLSSR-TVFGNVALPLELDNTPKDEIKRKVTELLALVGLG 131
Query: 82 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC---IERAVS 138
D LSGG K++++ A AL NP ++ DE TS +DP + + I R +
Sbjct: 132 DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL- 190
Query: 139 EGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 179
G ++L +H M+ + +C + ++ NG+ G+ + + S
Sbjct: 191 -GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 86.0 bits (213), Expect = 9e-18
Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 13/210 (6%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
A+ ++ V GE LLG NGAGK+T K+L+G +PT G + N + + +D +
Sbjct: 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINY-NKLDHKLAA 78
Query: 421 ---IGYCPQFDALNDRLTPREHLEFYSR-----VRNVPSV---LLNTIVNESLNKFALGH 469
IG Q ++ D LT E+L + R V V + + L + L
Sbjct: 79 QLGIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV 137
Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
D +V LS +K+ L A L+ + +I +DEPTS + +L+ + + EG
Sbjct: 138 DLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTA 197
Query: 530 VILTSHNMEECEALCTKLTIMVNGQFTCLG 559
++ SH + E +C + T+M +G C G
Sbjct: 198 IVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
Score = 74.1 bits (182), Expect = 6e-14
Identities = 55/229 (24%), Positives = 95/229 (41%), Gaps = 41/229 (17%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH--SIRDSMDLVRS 419
V ISF V RGE G GL G+G+T L G K G + S R +D V+
Sbjct: 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338
Query: 420 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN----KFALGHYSDRE- 474
+ Y + R F+ S+ N ++ SL K A+G + + +
Sbjct: 339 GMAYITE---------SRRDNGFFPNF----SIAQNMAISRSLKDGGYKGAMGLFHEVDE 385
Query: 475 ---------------------VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
+ LSGGN++K+ + L P +I DEPT G+D GA+
Sbjct: 386 QRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAK 445
Query: 514 RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 562
++ + + +G+ +++ S + E +C ++ + G+ T + +
Sbjct: 446 AEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNR 494
Score = 56.3 bits (136), Expect = 2e-08
Identities = 24/94 (25%), Positives = 51/94 (54%)
Query: 82 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 141
H ++ + LSGGN++K+ + L P +I DEPT G+D GA+ ++ + + +G+
Sbjct: 401 HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGK 460
Query: 142 CVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 175
+++ S + E +C ++ + G+ T + +
Sbjct: 461 VILMVSSELPEIITVCDRIAVFCEGRLTQILTNR 494
Score = 53.6 bits (129), Expect = 2e-07
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
D +V LS +K+ L A L+ + +I +DEPTS + +L+ + + EG ++
Sbjct: 140 DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIV 199
Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLG 172
SH + E +C + T+M +G C G
Sbjct: 200 YISHKLAEIRRICDRYTVMKDGSSVCSG 227
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 79.8 bits (198), Expect = 1e-17
Identities = 54/194 (27%), Positives = 74/194 (38%), Gaps = 70/194 (36%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ ++ L K Y G K + IS + G+ GL+G NGAGK+T K++ G ++P G
Sbjct: 1 IELENLSKTY----GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG- 55
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
I V+ IGY Q
Sbjct: 56 -------IVTWGSTVK--IGYFEQ------------------------------------ 70
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
LSGG K +L+ A LL NP L+ LDEPT+ +D + L E
Sbjct: 71 ---------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL----EE 111
Query: 523 AVSE-GRCVILTSH 535
A+ E VIL SH
Sbjct: 112 ALKEYPGTVILVSH 125
Score = 51.7 bits (125), Expect = 6e-08
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH 148
LSGG K +L+ A LL NP L+ LDEPT+ +D + L E A+ E VIL SH
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL----EEALKEYPGTVILVSH 125
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 81.8 bits (203), Expect = 1e-17
Identities = 60/222 (27%), Positives = 93/222 (41%), Gaps = 39/222 (17%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 411
G K A+ IS + +GE L+G +G GK+T ++L P G + I
Sbjct: 11 GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY 70
Query: 412 DSMDLV---RSYIGYCPQ----FD---ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
D V R +G Q F N R H L+ V E+
Sbjct: 71 DLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGI-------KLKEELDERVEEA 123
Query: 462 LNKFALGHYSDREV------RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
L K AL EV LSGG +++L A AL P ++ LDEPTS +DP +
Sbjct: 124 LRKAAL----WDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTA- 178
Query: 516 LWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 554
IE ++E + +++ +HNM++ + + ++NG+
Sbjct: 179 ---KIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGR 217
Score = 55.3 bits (134), Expect = 1e-08
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 17/110 (15%)
Query: 67 LNTIVNESLNKFALGHYSDREV------RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 120
L+ V E+L K AL EV LSGG +++L A AL P ++ LDEPTS
Sbjct: 116 LDERVEEALRKAAL----WDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171
Query: 121 MDPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 167
+DP + IE ++E + +++ +HNM++ + + ++NG+
Sbjct: 172 LDPISTA----KIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGR 217
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 81.1 bits (200), Expect = 1e-17
Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 5/177 (2%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVR 418
+P + QISF + G L G NGAGKTT K++ G + P G SI+ + +
Sbjct: 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQ 73
Query: 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTL 478
+ + +N LT RE+ + ++ + E F+L H D L
Sbjct: 74 KQLCFVGHRSGINPYLTLRENCLY-----DIHFSPGAVGITELCRLFSLEHLIDYPCGLL 128
Query: 479 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
S G KR+++ + L LDEP +D + + T I+ ++G V+LTSH
Sbjct: 129 SSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185
Score = 46.5 bits (110), Expect = 9e-06
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 8/131 (6%)
Query: 18 QKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 77
Q + T K L ++G+ +N LT RE+ + ++ + E
Sbjct: 63 QSIKKDLCTYQKQLCFVGH---RSGINPYLTLRENCLY-----DIHFSPGAVGITELCRL 114
Query: 78 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 137
F+L H D LS G KR+++ + L LDEP +D + + T I+
Sbjct: 115 FSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR 174
Query: 138 SEGRCVILTSH 148
++G V+LTSH
Sbjct: 175 AKGGAVLLTSH 185
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 85.1 bits (211), Expect = 2e-17
Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 23/208 (11%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI--RDSMDLVRSYIG 422
IS V GE GL G+ GAG+T + L G G + I + + +
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 423 YCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNTIV--------NESLNKF--ALG--- 468
Y P+ DR + +L+ + + NV ++ N N L ++ AL
Sbjct: 342 YLPE-----DRQSSGLYLD--APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF 394
Query: 469 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 528
+++++ RTLSGGN++K+ A L +P L+ +DEPT G+D AR ++ I ++
Sbjct: 395 NHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNV 454
Query: 529 CVILTSHNMEECEALCTKLTIMVNGQFT 556
V+ S ++EE E + ++ +M G+ +
Sbjct: 455 AVLFISSDLEEIEQMADRVLVMHQGEIS 482
Score = 70.5 bits (173), Expect = 7e-13
Identities = 28/85 (32%), Positives = 50/85 (58%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
++ RTLSGGN++K+ A L +P L+ +DEPT G+D AR ++ I ++ V+
Sbjct: 398 EQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVL 457
Query: 145 LTSHNMEECEALCTKLTIMVNGQFT 169
S ++EE E + ++ +M G+ +
Sbjct: 458 FISSDLEEIEQMADRVLVMHQGEIS 482
Score = 50.0 bits (120), Expect = 2e-06
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 30/203 (14%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-RDSMDLVRSY-IG 422
I F + GE LLG NGAGK+T K++ G + P SG + + R + I
Sbjct: 30 IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89
Query: 423 YCPQFDALNDRLTPREHLEF--------YSRVRNVPSVL---LNTIVNESLNKFALGHYS 471
PQ L L+ +E++ F +++ + + L L+ + + A
Sbjct: 90 LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVA----- 144
Query: 472 DRE-VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 530
DR+ V L G L+ + ++ LDEPT+ + P L++ I +++G +
Sbjct: 145 DRQIVEILRG-----------LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGI 193
Query: 531 ILTSHNMEECEALCTKLTIMVNG 553
+ SH + E L ++++M +G
Sbjct: 194 VFISHKLPEIRQLADRISVMRDG 216
Score = 37.0 bits (86), Expect = 0.023
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 105 LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMV 164
L+ + ++ LDEPT+ + P L++ I +++G ++ SH + E L ++++M
Sbjct: 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMR 214
Query: 165 NG 166
+G
Sbjct: 215 DG 216
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 84.1 bits (208), Expect = 2e-17
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 12/208 (5%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL-- 416
+ AV+ +S + +GE F LLG +G GK+T +ML G +PT+G + D +DL
Sbjct: 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI------MLDGVDLSH 85
Query: 417 VRSY---IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 473
V Y I Q AL +T +++ F + +P + + VNE L + ++ R
Sbjct: 86 VPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR 145
Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVIL 532
+ LSGG +++++ A +L P L+ LDEP +D R R ++ G ++
Sbjct: 146 KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205
Query: 533 TSHNMEECEALCTKLTIMVNGQFTCLGS 560
+H+ EE + ++ IM G+F +G
Sbjct: 206 VTHDQEEAMTMAGRIAIMNRGKFVQIGE 233
Score = 50.2 bits (120), Expect = 1e-06
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 42 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 101
AL +T +++ F + +P + + VNE L + ++ R+ LSGG +++++
Sbjct: 101 ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVAL 160
Query: 102 AIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVILTSHNMEECEALCTKL 160
A +L P L+ LDEP +D R R ++ G ++ +H+ EE + ++
Sbjct: 161 ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRI 220
Query: 161 TIMVNGQFTCLGS 173
IM G+F +G
Sbjct: 221 AIMNRGKFVQIGE 233
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 85.0 bits (211), Expect = 3e-17
Identities = 70/237 (29%), Positives = 108/237 (45%), Gaps = 46/237 (19%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
L V+RL A KP + ISF + GE G++G +G+GK+T ++L G PTSG
Sbjct: 334 ALSVERLT--AAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG 391
Query: 402 NAYVMNHSIR-DSMDLVR-------SYIGYCPQ----FD---ALN-----DRLTPREHLE 441
S+R D DL + +IGY PQ FD A N + P + +E
Sbjct: 392 -------SVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIE 444
Query: 442 FYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV----RTLSGGNKRKLSTAIALLGNPP 497
V+E + + G+ D + TLSGG +++++ A AL G+P
Sbjct: 445 AARLAG----------VHELILRLPQGY--DTRIGEGGATLSGGQRQRIALARALYGDPF 492
Query: 498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
L+ LDEP S +D L I A + G V++ +H A K+ ++ +G+
Sbjct: 493 LVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSAL-ASVDKILVLQDGR 548
Score = 49.2 bits (118), Expect = 4e-06
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
TLSGG +++++ A AL G+P L+ LDEP S +D L I A + G V++ +H
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALP 185
A K+ ++ +G+ G + +K + P
Sbjct: 531 RPSAL-ASVDKILVLQDGRIAAFGPREEVLAKVLRPP 566
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 80.6 bits (200), Expect = 3e-17
Identities = 62/222 (27%), Positives = 92/222 (41%), Gaps = 25/222 (11%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI--RDSM 414
G + +S V +GE +LG NG GKTT K L G + SG+ + I
Sbjct: 11 GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPH 70
Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLE-----FYSRVRNVPSVLLNTIVNESLNKF-ALG 468
+ R+ I Y PQ + RLT E+L R R +P +E F L
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIP--------DEIYELFPVLK 122
Query: 469 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-- 526
R LSGG +++L+ A AL+ P L+ LDEPT G+ P + I R +
Sbjct: 123 EMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPS----IIKDIGRVIRRLR 178
Query: 527 ---GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 565
G ++L ++ L + +M G+ G+ L
Sbjct: 179 AEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220
Score = 46.7 bits (112), Expect = 1e-05
Identities = 42/156 (26%), Positives = 63/156 (40%), Gaps = 23/156 (14%)
Query: 34 IGYCPQFDALNDRLTPREHLE-----FYSRVRNVPSVLLNTIVNESLNKF-ALGHYSDRE 87
I Y PQ + RLT E+L R R +P +E F L R
Sbjct: 77 IAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIP--------DEIYELFPVLKEMLGRR 128
Query: 88 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-----GRC 142
LSGG +++L+ A AL+ P L+ LDEPT G+ P + I R + G
Sbjct: 129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPS----IIKDIGRVIRRLRAEGGMA 184
Query: 143 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178
++L ++ L + +M G+ G+ L
Sbjct: 185 ILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 81.5 bits (201), Expect = 3e-17
Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 22/232 (9%)
Query: 339 SGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 398
+VV + + N A+ SF V G L+G+NG+GK+T FK L G ++
Sbjct: 3 QQAGIVVNDVTVTWRNGH---TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL 59
Query: 399 TSGNAYVMNHSIRDSMDLVRSYIGYCPQ-------FDALNDRLT---PREHLEFYSRVRN 448
SG ++ R + L ++ + Y PQ F L + + H+ + R
Sbjct: 60 ASGKISILGQPTRQA--LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRR--- 114
Query: 449 VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 508
IV +L + + + R++ LSGG K+++ A A+ +I LDEP +G+
Sbjct: 115 -AKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGV 173
Query: 509 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
D + + + EG+ +++++HN+ C T+MV G T L S
Sbjct: 174 DVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFC-DYTVMVKG--TVLAS 222
Score = 52.2 bits (125), Expect = 2e-07
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 129
IV +L + + + R++ LSGG K+++ A A+ +I LDEP +G+D +
Sbjct: 122 IVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARI 181
Query: 130 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
+ + EG+ +++++HN+ C T+MV G T L S
Sbjct: 182 ISLLRELRDEGKTMLVSTHNLGSVTEFC-DYTVMVKG--TVLAS 222
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 84.3 bits (209), Expect = 3e-17
Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 40/227 (17%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMD 415
G KP + ISF + GE ++G +G+GK+T +++ G PTSG S+R D D
Sbjct: 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG-------SVRLDGAD 381
Query: 416 LVR-------SYIGYCPQ----FD---ALN-----DRLTPREHLEFYSRVRNVPSVLLNT 456
L + +IGY PQ F A N + P + +E +++ V ++L
Sbjct: 382 LKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIE-AAKLAGVHELILR- 439
Query: 457 IVNESLNKFALGHYSDREVR--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
G+ + TLSGG +++++ A AL G+P L+ LDEP S +D +
Sbjct: 440 --------LPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491
Query: 515 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 561
L I+ + G V++ +H + K+ ++ +G+ G
Sbjct: 492 ALANAIKALKARGITVVVITHRPSLLGCV-DKILVLQDGRIARFGER 537
Score = 50.0 bits (120), Expect = 2e-06
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 149
TLSGG +++++ A AL G+P L+ LDEP S +D + L I+ + G V++ +H
Sbjct: 454 TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR 513
Query: 150 MEECEALCTKLTIMVNGQFTCLGSATHLKSK 180
+ K+ ++ +G+ G + +K
Sbjct: 514 PSLLGCV-DKILVLQDGRIARFGERDEVLAK 543
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 81.4 bits (201), Expect = 4e-17
Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 12/209 (5%)
Query: 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 400
+++ K + Y +SK KPA+N ISF + RG L+G NG+GK+T K++ G + P
Sbjct: 4 NIVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD 61
Query: 401 GNAYVMNHS----IRDSMDLVRSYIGYCPQFDALNDRL---TPREHLEFYSRVRNVPSVL 453
+ ++ +R +G F +++ T + + F R VP
Sbjct: 62 NPNSKITVDGITLTAKTVWDIREKVGIV--FQNPDNQFVGATVGDDVAFGLENRAVPRPE 119
Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
+ IV + L + Y D E LSGG K++++ A L P +I LDE TS +DP +
Sbjct: 120 MIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179
Query: 514 RFLWTCIERAVSE-GRCVILTSHNMEECE 541
+ I + + VI +H+++E
Sbjct: 180 EQILKLIRKLKKKNNLTVISITHDIDEAN 208
Score = 56.7 bits (137), Expect = 9e-09
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 60 RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 119
R VP + IV + L + Y D E LSGG K++++ A L P +I LDE TS
Sbjct: 113 RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTS 172
Query: 120 GMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLK 178
+DP + + I + + VI +H+++E + ++ ++ +G+ GS +
Sbjct: 173 MLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIF 231
Query: 179 SKSMALPVSGNDL 191
SK L G D+
Sbjct: 232 SKVEMLKEIGLDI 244
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 80.5 bits (199), Expect = 4e-17
Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 10/225 (4%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ V+ + K + G A++ +S + GE LLG +G+GKTT +++ G +P SG
Sbjct: 3 IEVRNVSKRF----GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIV 458
D + + +G+ Q AL +T +++ F RV+ P + V
Sbjct: 59 ILFGGEDATD-VPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
+E L L +DR LSGG +++++ A AL P ++ LDEP +D R+ L
Sbjct: 118 HELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 177
Query: 519 CIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 562
+ R E + +H+ EE + ++ +M G+ +G+
Sbjct: 178 WLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222
Score = 48.5 bits (116), Expect = 3e-06
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 5/147 (3%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNV----PSVLLNTIVNESLNKFALGHYSDREVR 89
+G+ Q AL +T +++ F RV+ P + V+E L L +DR
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA 135
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH 148
LSGG +++++ A AL P ++ LDEP +D R+ L + R E + +H
Sbjct: 136 QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTH 195
Query: 149 NMEECEALCTKLTIMVNGQFTCLGSAT 175
+ EE + ++ +M G+ +G+
Sbjct: 196 DQEEALEVADRVVVMNKGRIEQVGTPD 222
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 80.6 bits (200), Expect = 6e-17
Identities = 55/242 (22%), Positives = 90/242 (37%), Gaps = 64/242 (26%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G + ++ +S + GE +LG NGAGK+T + L+G + P SG + + D
Sbjct: 13 GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAD---- 68
Query: 417 VRSYIGYCPQFDALNDRLTPRE------------HLEFYSRVRNV------PSVLLNT-- 456
+P E L F V V P L
Sbjct: 69 -----------------WSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAED 111
Query: 457 --IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL------GNPPLIFLDEPTSGM 508
+V +L + L H + R+ LSGG ++++ A L G P + LDEPTS +
Sbjct: 112 DALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSAL 171
Query: 509 DPG--------ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
D AR+ ER + V+L H++ ++ ++ G+ G+
Sbjct: 172 DLAHQHHVLRLARQL---AHERGL--AVIVVL--HDLNLAARYADRIVLLHQGRLVADGT 224
Query: 561 AT 562
Sbjct: 225 PA 226
Score = 49.8 bits (120), Expect = 1e-06
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 21/120 (17%)
Query: 70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL------GNPPLIFLDEPTSGMDP 123
+V +L + L H + R+ LSGG ++++ A L G P + LDEPTS +D
Sbjct: 114 LVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
Query: 124 G--------ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 175
AR+ ER + V+L H++ ++ ++ G+ G+
Sbjct: 174 AHQHHVLRLARQL---AHERGL--AVIVVL--HDLNLAARYADRIVLLHQGRLVADGTPA 226
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 80.8 bits (199), Expect = 6e-17
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 8/225 (3%)
Query: 347 RLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 406
RL + + PA+ I+ + +GE G++G NG+GK+T L G ++P G V
Sbjct: 3 RLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVS 62
Query: 407 NHSIRDSMDL--VRSYIGYC---PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
D L +R +G P+ + T E L F +P + + V+ +
Sbjct: 63 GIDTGDFSKLQGIRKLVGIVFQNPETQFVGR--TVEEDLAFGPENLCLPPIEIRKRVDRA 120
Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
L + L Y R +TLSGG + ++ A L P + DE TS +DP + + I+
Sbjct: 121 LAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIK 180
Query: 522 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
+ +G+ ++ +HN+EE ++ +M G+ G ++ S
Sbjct: 181 KLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENVLS 224
Score = 56.1 bits (135), Expect = 1e-08
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 6/158 (3%)
Query: 48 TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG 107
T E L F +P + + V+ +L + L Y R +TLSGG + ++ A L
Sbjct: 94 TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM 153
Query: 108 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
P + DE TS +DP + + I++ +G+ ++ +HN+EE ++ +M G+
Sbjct: 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGK 212
Query: 168 FTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRAL 205
G ++ S VS LG P EL+ L
Sbjct: 213 IVLEGEPENVLSD-----VSLQTLGLTPPSLIELAENL 245
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 78.8 bits (195), Expect = 7e-17
Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 40/185 (21%)
Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML-----TGAIKPTSGNAYVMNHSI 410
G + +N IS V G L+G +GAGKTT +L G I G + +
Sbjct: 17 GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT---GEILINGRPL 73
Query: 411 RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY 470
+ + GY Q D + LT RE L F S LL
Sbjct: 74 DKNF---QRSTGYVEQQDVHSPNLTVREALRF--------SALL---------------- 106
Query: 471 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 530
R LS +++L+ + L P ++FLDEPTSG+D A + +++ G+ +
Sbjct: 107 -----RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAI 161
Query: 531 ILTSH 535
+ T H
Sbjct: 162 LCTIH 166
Score = 66.9 bits (164), Expect = 8e-13
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 30/123 (24%)
Query: 27 IDKNLS-YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 85
+DKN GY Q D + LT RE L F S LL
Sbjct: 73 LDKNFQRSTGYVEQQDVHSPNLTVREALRF--------SALL------------------ 106
Query: 86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
R LS +++L+ + L P ++FLDEPTSG+D A + +++ G+ ++
Sbjct: 107 ---RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILC 163
Query: 146 TSH 148
T H
Sbjct: 164 TIH 166
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 79.1 bits (195), Expect = 7e-17
Identities = 51/199 (25%), Positives = 96/199 (48%), Gaps = 10/199 (5%)
Query: 366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCP 425
V GE ++G +GAGK+T ++ G I+P SG+ V + S R +
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRP-VSMLF 76
Query: 426 QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA----LGHYSDREVRTLSGG 481
Q + L LT R+++ P + LN E + A + Y DR LSGG
Sbjct: 77 QENNLFAHLTVRQNIGLGLH----PGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGG 132
Query: 482 NKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEEC 540
+++++ A L+ P++ LDEP S +DP R + +++ SE R +++ +H++ +
Sbjct: 133 QRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDA 192
Query: 541 EALCTKLTIMVNGQFTCLG 559
A+ +++ ++ G+ +
Sbjct: 193 RAIASQIAVVSQGKIKVVS 211
Score = 60.6 bits (147), Expect = 2e-10
Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 63 PSVLLNTIVNESLNKFA----LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 118
P + LN E + A + Y DR LSGG +++++ A L+ P++ LDEP
Sbjct: 97 PGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPF 156
Query: 119 SGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 172
S +DP R + +++ SE R +++ +H++ + A+ +++ ++ G+ +
Sbjct: 157 SALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 80.2 bits (198), Expect = 1e-16
Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 35/211 (16%)
Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
V+ L Y + GTK A+ +S + G LLG NGAGK+T L G P G
Sbjct: 7 VEDLHFRYKD--GTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 405 VMNHSIRDSMD-LVRSYIGYCPQ----------------FDALNDRLTPREHLEFYSRVR 447
VM + + VRS +G Q F +N L E
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDE--------- 114
Query: 448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 507
+ V E+L + + D+ LS G K++++ A L +P +I LDEP +
Sbjct: 115 ------VERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAY 168
Query: 508 MDPGARRFLWTCIERAVSEGRCVILTSHNME 538
+DP + L ++R ++G+ VI+ +H+++
Sbjct: 169 LDPRGQETLMEILDRLHNQGKTVIVATHDVD 199
Score = 52.4 bits (126), Expect = 2e-07
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 15/112 (13%)
Query: 40 FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL 99
F +N L E + V E+L + + D+ LS G K+++
Sbjct: 103 FGPVNMGLDKDE---------------VERRVEEALKAVRMWDFRDKPPYHLSYGQKKRV 147
Query: 100 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
+ A L +P +I LDEP + +DP + L ++R ++G+ VI+ +H+++
Sbjct: 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 79.5 bits (196), Expect = 2e-16
Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 38/224 (16%)
Query: 352 YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG----NAYVMN 407
Y S GT A+ I+ + +GE +LG NGAGK+T F+ L G +KP+SG + ++
Sbjct: 13 YNYSDGTH-ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPID 71
Query: 408 HSIRDSMDLVRSYIGYCPQ----------------FDALNDRLTPREHLEFYSRVRNVPS 451
+S + M L R +G Q F A+N +L P + E RV N
Sbjct: 72 YSRKGLMKL-RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKL-PED--EVRKRVDNA-- 125
Query: 452 VLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP- 510
L + + H D+ LS G K++++ A L+ P ++ LDEPT+G+DP
Sbjct: 126 ----------LKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPM 175
Query: 511 GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
G + +E G +I+ +H+++ C + +M G+
Sbjct: 176 GVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGR 219
Score = 48.3 bits (115), Expect = 4e-06
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFL 129
V+ +L + + H D+ LS G K++++ A L+ P ++ LDEPT+G+DP G +
Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 130 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
+E G +I+ +H+++ C + +M G+
Sbjct: 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGR 219
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 80.5 bits (199), Expect = 2e-16
Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 11/204 (5%)
Query: 370 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV-----RSYIGYC 424
G+G + G +G+GKTT +++ G +P G + ++ DS + + IGY
Sbjct: 22 GQGVT-AIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 425 PQFDALNDRLTPREHLEF-YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK 483
Q L L+ R +L + R R + V E L +GH R LSGG K
Sbjct: 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLG---IGHLLGRLPGRLSGGEK 137
Query: 484 RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNMEECEA 542
++++ ALL +P L+ +DEP + +D + + +ER +E ++ SH+++E
Sbjct: 138 QRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLR 197
Query: 543 LCTKLTIMVNGQFTCLGSATHLKS 566
L ++ ++ +G+ G + +
Sbjct: 198 LADRVVVLEDGRVAAAGPIAEVWA 221
Score = 65.1 bits (159), Expect = 3e-11
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 5/161 (3%)
Query: 34 IGYCPQFDALNDRLTPREHLEF-YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
IGY Q L L+ R +L + R R + V E L +GH R LS
Sbjct: 77 IGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLG---IGHLLGRLPGRLS 133
Query: 93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNME 151
GG K++++ ALL +P L+ +DEP + +D + + +ER +E ++ SH+++
Sbjct: 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ 193
Query: 152 ECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLG 192
E L ++ ++ +G+ G + + ++ D G
Sbjct: 194 EVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLAREDQG 234
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 78.4 bits (194), Expect = 2e-16
Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 24/191 (12%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
P + IS + GE L+G +G+GK+T ++ SG + H +RD ++ +
Sbjct: 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASL 74
Query: 418 RSYIGYCPQ----FD-------ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA 466
R IG Q F+ A RE +E +R N +E + +
Sbjct: 75 RRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAAN---------AHEFIMELP 125
Query: 467 LGHYSDREVR--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
G+ + R LSGG +++++ A ALL +PP++ LDE TS +D + R + +ER
Sbjct: 126 EGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERL- 184
Query: 525 SEGRCVILTSH 535
+ R + +H
Sbjct: 185 MKNRTTFVIAH 195
Score = 48.8 bits (117), Expect = 2e-06
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
+R V+ LSGG +++++ A ALL +PP++ LDE TS +D + R + +ER + R
Sbjct: 134 ERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERL-MKNRTTF 191
Query: 145 LTSH 148
+ +H
Sbjct: 192 VIAH 195
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 81.6 bits (202), Expect = 2e-16
Identities = 64/226 (28%), Positives = 108/226 (47%), Gaps = 46/226 (20%)
Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV 417
+ P VN +SF + +GE G+ GL GAG+T K+L GA+ TSG + H + +
Sbjct: 264 SGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEV-----VT 318
Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS------ 471
RS PQ D L + + + S R ++L V E+++ AL ++S
Sbjct: 319 RS-----PQ-DGLANGIV------YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSL 366
Query: 472 -----------------------DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 508
++ + LSGGN++K++ A L+ P ++ LDEPT G+
Sbjct: 367 KHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426
Query: 509 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
D GA++ ++ I + +EG +IL S M E + ++ +M G+
Sbjct: 427 DVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472
Score = 57.7 bits (140), Expect = 8e-09
Identities = 28/83 (33%), Positives = 51/83 (61%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
++ + LSGGN++K++ A L+ P ++ LDEPT G+D GA++ ++ I + +EG +I
Sbjct: 390 EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSII 449
Query: 145 LTSHNMEECEALCTKLTIMVNGQ 167
L S M E + ++ +M G+
Sbjct: 450 LVSSEMPEVLGMSDRILVMHEGR 472
Score = 54.6 bits (132), Expect = 9e-08
Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 15/209 (7%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-----R 411
G K A++ + V G L+G NGAGK+T K+LTG +G+ + + +
Sbjct: 16 GVK-ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPK 74
Query: 412 DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR--VRNVPSVLLNTIVNES---LNKFA 466
S + + IG Q L +LT E++ F R V + + E+ L +
Sbjct: 75 SSQE---AGIGIIHQELNLIPQLTIAENI-FLGREFVNRFGRIDWKKMYAEADKLLARLN 130
Query: 467 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 526
L SD+ V LS G ++ + A L +I +DEPT + L+ I S+
Sbjct: 131 LRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ 190
Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQF 555
GR ++ SH ++E +C +T+ +GQF
Sbjct: 191 GRGIVYISHRLKEIFEICDDVTVFRDGQF 219
Score = 44.2 bits (105), Expect = 1e-04
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 4/145 (2%)
Query: 75 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 134
L + L SD+ V LS G ++ + A L +I +DEPT + L+ I
Sbjct: 126 LARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIR 185
Query: 135 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLG-- 192
S+GR ++ SH ++E +C +T+ +GQF L S+ + G L
Sbjct: 186 ELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDSLIEMMVGRKLEDQ 245
Query: 193 --RGDPVRSELSRALNDGSGSGIRN 215
R D E+ +++ SG G+ +
Sbjct: 246 YPRLDKAPGEVRLKVDNLSGPGVND 270
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 81.6 bits (202), Expect = 3e-16
Identities = 63/228 (27%), Positives = 93/228 (40%), Gaps = 36/228 (15%)
Query: 329 ERERVEHG-----ADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGA 383
R G A L + Y G +PA+ +SF V GE L+G +GA
Sbjct: 303 AAPRPLAGKAPVTAAPAPSLEFSGVSVAYP---GRRPALRPVSFTVPPGERVALVGPSGA 359
Query: 384 GKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQ----FDALNDRLTPRE 438
GK+T +L G + PT G+ V + D D R I + PQ F T E
Sbjct: 360 GKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-----TIAE 414
Query: 439 HLEFYSR-------VRNVPSVLLNTIVNESLNKFALGHYSDREV----RTLSGGNKRKLS 487
++ + L+ V AL D + LSGG ++L+
Sbjct: 415 NIRLARPDASDAEIREALERAGLDEFVA------ALPQGLDTPIGEGGAGLSGGQAQRLA 468
Query: 488 TAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
A A L + PL+ LDEPT+ +D + RA+++GR V+L +H
Sbjct: 469 LARAFLRDAPLLLLDEPTAHLDAETEAEV-LEALRALAQGRTVLLVTH 515
Score = 52.3 bits (126), Expect = 4e-07
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
LSGG ++L+ A A L + PL+ LDEPT+ +D + RA+++GR V+L +H
Sbjct: 459 LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEV-LEALRALAQGRTVLLVTH 515
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 78.0 bits (193), Expect = 3e-16
Identities = 54/188 (28%), Positives = 99/188 (52%), Gaps = 14/188 (7%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
+P + +SF + G+ ++G +G+GK+T ++L +SG+ + IR+ ++D +
Sbjct: 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSL 73
Query: 418 RSYIGYCPQFDAL-NDRLTPREHLEFYSRV----RNVPSVLLNTIVNESLNKFALGHYS- 471
R IG PQ L ND T ++ Y R V +++ + +F G+ +
Sbjct: 74 RRAIGVVPQDTVLFND--TIGYNIR-YGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTI 130
Query: 472 --DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
+R ++ LSGG K++++ A A+L NPP++ LDE TS +D R + + VS+GR
Sbjct: 131 VGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD-VSKGRT 188
Query: 530 VILTSHNM 537
I+ +H +
Sbjct: 189 TIVIAHRL 196
Score = 53.4 bits (129), Expect = 6e-08
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG K++++ A A+L NPP++ LDE TS +D R + + VS+GR I+ +H +
Sbjct: 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD-VSKGRTTIVIAHRL 196
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 81.6 bits (202), Expect = 3e-16
Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 39/247 (15%)
Query: 328 KERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTT 387
+ E A +G L ++ + Y + A+ + + +GE +LG +G+GK+T
Sbjct: 322 EVTFPDEQTATTGQALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKST 379
Query: 388 TFKMLTGAIKPTSGNAYVMNHSIR--DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR 445
++L GA P G+ + I D L R I Q R HL F
Sbjct: 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQAL-RETISVLTQ----------RVHL-FSGT 427
Query: 446 VRNVPSVLL------NTIVNESLNKFALGHYSDREV-----------RTLSGGNKRKLST 488
+R+ ++ L + + +L + L + R LSGG +R+L+
Sbjct: 428 LRD--NLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLAL 485
Query: 489 AIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKL 547
A ALL + PL LDEPT G+DP R+ L E A EG+ +++ +H + E ++
Sbjct: 486 ARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLRGLER-MDRI 542
Query: 548 TIMVNGQ 554
++ NG+
Sbjct: 543 IVLDNGK 549
Score = 60.4 bits (147), Expect = 1e-09
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTS 147
R LSGG +R+L+ A ALL + PL LDEPT G+DP R+ L E A EG+ +++ +
Sbjct: 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVT 530
Query: 148 HNMEECEALCTKLTIMVNGQ 167
H + E ++ ++ NG+
Sbjct: 531 HRLRGLER-MDRIIVLDNGK 549
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 78.2 bits (193), Expect = 4e-16
Identities = 51/219 (23%), Positives = 87/219 (39%), Gaps = 31/219 (14%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD----SMDLV 417
++ +S + GE +LG NGAGK+T K L+G + P SG + + +
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76
Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN--TIVNESLNKFALGHYSDREV 475
R PQ +L T +E ++ I ++L L + R+
Sbjct: 77 R---AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY 133
Query: 476 RTLSGGNKRKLSTAIAL------LGNPPLIFLDEPTSGMDPG--------ARRFLWTCIE 521
RTLSGG ++++ A L + + +FLDEPTS +D AR+ E
Sbjct: 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQL---ARE 190
Query: 522 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
+L H++ ++ ++ G+ GS
Sbjct: 191 GG---AVLAVL--HDLNLAAQYADRIVLLHQGRVIASGS 224
Score = 52.4 bits (126), Expect = 2e-07
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 22/118 (18%)
Query: 70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL------LGNPPLIFLDEPTSGMDP 123
I ++L L + R+ RTLSGG ++++ A L + + +FLDEPTS +D
Sbjct: 115 IAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174
Query: 124 G--------ARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
AR+ E +L H++ ++ ++ G+ GS
Sbjct: 175 AHQHHTLRLARQL---AREGG---AVLAVL--HDLNLAAQYADRIVLLHQGRVIASGS 224
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 78.5 bits (194), Expect = 4e-16
Identities = 61/225 (27%), Positives = 108/225 (48%), Gaps = 16/225 (7%)
Query: 338 DSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
+++ V+ + Y ++ A+ +SF V GE ++G NG+GK+T K+L G +
Sbjct: 1 MKEEIIRVEHISFRYPDAA--TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL 58
Query: 398 PTSGNAYV--MNHSIRDSMDLVRSYIGYC---P--QFDALNDRLTPREHLEFYSRVRNVP 450
P +G V M S D VR +G P QF T ++ + F VP
Sbjct: 59 PEAGTITVGGMVLSEETVWD-VRRQVGMVFQNPDNQFVGA----TVQDDVAFGLENIGVP 113
Query: 451 SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 510
+ V+++L + + + +RE LSGG K++++ A L P +I LDE TS +DP
Sbjct: 114 REEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 511 GARRFLWTCIERAVSEGR-CVILTSHNMEECEALCTKLTIMVNGQ 554
RR + + + + V+ +H+++E A ++ +M G+
Sbjct: 174 RGRREVLETVRQLKEQKGITVLSITHDLDEA-AQADRVIVMNKGE 217
Score = 52.3 bits (126), Expect = 2e-07
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 6/136 (4%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
V+++L + + + +RE LSGG K++++ A L P +I LDE TS +DP RR +
Sbjct: 121 VDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL 180
Query: 131 TCIERAVSEGR-CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGN 189
+ + + V+ +H+++E A ++ +M G+ G+ + L G
Sbjct: 181 ETVRQLKEQKGITVLSITHDLDEA-AQADRVIVMNKGEILEEGTPEEIFKSGHMLQEIGL 239
Query: 190 DLGRGDPVRSELSRAL 205
D+ P +L L
Sbjct: 240 DV----PFSVKLKELL 251
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 79.1 bits (195), Expect = 4e-16
Identities = 53/185 (28%), Positives = 95/185 (51%), Gaps = 2/185 (1%)
Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTP 436
LLG +G GKTT ++L G +P SG+ + + + +R +I Q AL +T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLR-HINMVFQSYALFPHMTV 59
Query: 437 REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP 496
E++ F ++R VP + V E+L L ++DR+ LSGG +++++ A AL+ P
Sbjct: 60 EENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKP 119
Query: 497 PLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQF 555
++ LDEP S +D R + ++ + G + +H+ EE + ++ IM G+
Sbjct: 120 KILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKI 179
Query: 556 TCLGS 560
+G+
Sbjct: 180 AQIGT 184
Score = 59.8 bits (145), Expect = 1e-09
Identities = 40/144 (27%), Positives = 73/144 (50%), Gaps = 1/144 (0%)
Query: 31 LSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRT 90
L +I Q AL +T E++ F ++R VP + V E+L L ++DR+
Sbjct: 41 LRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQ 100
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149
LSGG +++++ A AL+ P ++ LDEP S +D R + ++ + G + +H+
Sbjct: 101 LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160
Query: 150 MEECEALCTKLTIMVNGQFTCLGS 173
EE + ++ IM G+ +G+
Sbjct: 161 QEEAMTMSDRIAIMRKGKIAQIGT 184
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 80.7 bits (200), Expect = 5e-16
Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 5/200 (2%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV--MNHSIRDSMDLVR 418
A++ ISF G+ L+G NGAGK+T K+L+G +P +G+ + + +
Sbjct: 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALA 78
Query: 419 SYIGYCPQFDALNDRLTPREHL---EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV 475
+ + Q L +T E+L + + V LLN E L + D +
Sbjct: 79 AGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL 138
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
+ LS G ++ + A AL N +I DEPTS + L+ I +EGR ++ SH
Sbjct: 139 KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSH 198
Query: 536 NMEECEALCTKLTIMVNGQF 555
MEE ALC +T+ +G++
Sbjct: 199 RMEEIFALCDAITVFKDGRY 218
Score = 69.9 bits (172), Expect = 1e-12
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 31/217 (14%)
Query: 360 PAVNQ-ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH--SIRDSMDL 416
P + + ISF V GE GL GL GAG++ K+L GA + T+G Y+ IR D
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325
Query: 417 VRSYIGYCPQFDALNDRLTP----REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY-- 470
+R+ I CP+ D + + P +++ +R ++ ++N +
Sbjct: 326 IRAGIMLCPE-DRKAEGIIPVHSVADNINISARRHHLR---AGCLINNRWEAENADRFIR 381
Query: 471 --------SDREVRTLSGGNKRKLSTAIALLG-----NPPLIFLDEPTSGMDPGARRFLW 517
++ + LSGGN++K A+LG + +I LDEPT G+D GA+ ++
Sbjct: 382 SLNIKTPSREQLIMNLSGGNQQK-----AILGRWLSEDMKVILLDEPTRGIDVGAKHEIY 436
Query: 518 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
I ++G V+ S ++ E + ++ +M G+
Sbjct: 437 NVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473
Score = 53.8 bits (130), Expect = 2e-07
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
D ++ LS G ++ + A AL N +I DEPTS + L+ I +EGR ++
Sbjct: 135 DTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVIL 194
Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRA 204
SH MEE ALC +T+ +G++ AT MA + R V++ + R
Sbjct: 195 YVSHRMEEIFALCDAITVFKDGRYV----ATF---DDMA------QVDRDQLVQAMVGRE 241
Query: 205 LND 207
+ D
Sbjct: 242 IGD 244
Score = 43.4 bits (103), Expect = 3e-04
Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 13/109 (11%)
Query: 85 DREVRTLSGGNKRKLSTAIALLG-----NPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 139
++ + LSGGN++K A+LG + +I LDEPT G+D GA+ ++ I ++
Sbjct: 391 EQLIMNLSGGNQQK-----AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ 445
Query: 140 GRCVILTSHNMEECEALCTKLTIMVNGQFT-CL--GSATHLKSKSMALP 185
G V+ S ++ E + ++ +M G+ L AT ++ S+ALP
Sbjct: 446 GVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATERQALSLALP 494
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 79.9 bits (197), Expect = 6e-16
Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 15/215 (6%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI--RD 412
G ++ + V G GL+G NGAGKTT + + G + PT+G V +
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 413 SMDLVRSYIGYCPQFDALNDRLTPRE--------HLEFYSRVRNVPSVLLNTIVNESLNK 464
+ R + PQ +L+ R+ H + V ++ +
Sbjct: 72 ARAASRR-VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETD----RAAVERAMER 126
Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
+ ++DR V +LSGG ++++ A AL P++ LDEPT+ +D + + R V
Sbjct: 127 TGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV 186
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 559
+G+ + H+++ C +L ++ +G+ G
Sbjct: 187 DDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
Score = 54.8 bits (132), Expect = 6e-08
Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 6/152 (3%)
Query: 69 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 128
V ++ + + ++DR V +LSGG ++++ A AL P++ LDEPT+ +D +
Sbjct: 118 AAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVR 177
Query: 129 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG------SATHLKSKSM 182
+ R V +G+ + H+++ C +L ++ +G+ G +A L++
Sbjct: 178 TLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAFD 237
Query: 183 ALPVSGNDLGRGDPVRSELSRALNDGSGSGIR 214
A G D G P + L + + R
Sbjct: 238 ARTAVGTDPATGAPTVTPLPDPDRTEAAADTR 269
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 80.5 bits (199), Expect = 6e-16
Identities = 57/199 (28%), Positives = 85/199 (42%), Gaps = 34/199 (17%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMD 415
G P ++ +S + GE +LG +G+GK+T L G + P G + + D
Sbjct: 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQD 405
Query: 416 LVRSYIGYCPQ----FDAL---NDRL-----TPREHLEFYSRV------RNVPSVLLNTI 457
VR + C Q FD N RL T E RV R +P L +T+
Sbjct: 406 EVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGL-DTV 464
Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
+ E LSGG +++L+ A ALL + P++ LDEPT +D L
Sbjct: 465 LGEG-------------GARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELL 511
Query: 518 TCIERAVSEGRCVILTSHN 536
+ A GR V+L +H+
Sbjct: 512 EDL-LAALSGRTVVLITHH 529
Score = 55.8 bits (135), Expect = 4e-08
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
LSGG +++L+ A ALL + P++ LDEPT +D L + A GR V+L +H
Sbjct: 470 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL-LAALSGRTVVLITH 528
Query: 149 N 149
+
Sbjct: 529 H 529
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 76.6 bits (189), Expect = 7e-16
Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 29/230 (12%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
+L + L K Y K + +S +G+GE ++G +G+GK+T +L G PTSG
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 402 NAYVMNHSIR-----DSMDLVRSYIGYCPQFDALNDRLTPREHL--EFYSRVRNV--PSV 452
S+ + L +G+ QF HL +F + + NV P +
Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFIYQF----------HHLLPDF-TALENVAMPLL 109
Query: 453 LLNTIVNES-------LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 505
+ V E+ L K L H + LSGG +++++ A AL+ P L+ DEPT
Sbjct: 110 IGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPT 169
Query: 506 SGMDP-GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
+D A+ +E ++ +H++E + L ++ M +GQ
Sbjct: 170 GNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQ 218
Score = 44.3 bits (105), Expect = 5e-05
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWT 131
E L K L H + LSGG +++++ A AL+ P L+ DEPT +D A+
Sbjct: 124 EMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183
Query: 132 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
+E ++ +H++E + L ++ M +GQ
Sbjct: 184 MLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQ 218
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 76.8 bits (189), Expect = 7e-16
Identities = 63/197 (31%), Positives = 101/197 (51%), Gaps = 14/197 (7%)
Query: 349 FKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408
FK + S K + IS G + ++G +GAGK+T K++ I PT G+ +
Sbjct: 6 FKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGV 65
Query: 409 SIR--DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLLNTIVNESLN 463
I+ D +DL R IG Q L + T ++++E+ ++ NV +IV LN
Sbjct: 66 DIKTIDVIDL-RRKIGMVFQQPHLFEG-TVKDNIEYGPMLKGEKNVDVEYYLSIV--GLN 121
Query: 464 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 523
K Y+ R+V+ LSGG +++S A L NP ++ LDEPTS +DP + + I +
Sbjct: 122 K----EYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKL 177
Query: 524 VSE-GRCVILTSHNMEE 539
++ VI +HNME+
Sbjct: 178 KNKMNLTVIWITHNMEQ 194
Score = 58.7 bits (142), Expect = 1e-09
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 83 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GR 141
Y+ R+V+ LSGG +++S A L NP ++ LDEPTS +DP + + I + ++
Sbjct: 124 YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNL 183
Query: 142 CVILTSHNMEE 152
VI +HNME+
Sbjct: 184 TVIWITHNMEQ 194
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 77.0 bits (190), Expect = 1e-15
Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 30/218 (13%)
Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI------- 410
K A+N +S + G+ ++G NGAGK+T + G +KPTSG + +
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK 77
Query: 411 RDSMDLVRSY----IGYCPQFDALNDRLTPREHL---EFYSRVRNVPSVLLNTIVN---E 460
R ++ L R + G P LT E+L E + R + S L + E
Sbjct: 78 RANL-LARVFQDPLAGTAP-------ELTIEENLALAESRGKKRGLSSALNERRRSSFRE 129
Query: 461 SLNKFALG---HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
L + LG SDR + LSGG ++ LS +A L P ++ LDE T+ +DP F+
Sbjct: 130 RLARLGLGLENRLSDR-IGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM 188
Query: 518 TCIERAVSEGR-CVILTSHNMEECEALCTKLTIMVNGQ 554
+ V E + ++ +HNME+ +L ++ +G+
Sbjct: 189 ELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGK 226
Score = 53.1 bits (128), Expect = 1e-07
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 132
L SDR + LSGG ++ LS +A L P ++ LDE T+ +DP F+
Sbjct: 132 ARLGLGLENRLSDR-IGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMEL 190
Query: 133 IERAVSEGR-CVILTSHNMEECEALCTKLTIMVNGQ 167
+ V E + ++ +HNME+ +L ++ +G+
Sbjct: 191 TAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGK 226
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 78.5 bits (193), Expect = 1e-15
Identities = 50/212 (23%), Positives = 92/212 (43%), Gaps = 5/212 (2%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP--TSGNAYVMNHSIRDSM 414
G ++ +S + GE L+G +G GKTT + + G +K +G + + + +
Sbjct: 16 GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP 75
Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
R + Q AL L +++ F R + +P + V ++L LG +
Sbjct: 76 PHKRG-LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHL 134
Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVIL 532
LSGG +++++ A A+ P ++ LDEP S +D R + I E ++
Sbjct: 135 PAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILC 194
Query: 533 TSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+H+ ++ L K IM +G+ G L
Sbjct: 195 VTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
Score = 59.6 bits (144), Expect = 1e-09
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 42 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 101
AL L +++ F R + +P + V ++L LG + LSGG +++++
Sbjct: 89 ALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAI 148
Query: 102 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVILTSHNMEECEALCTK 159
A A+ P ++ LDEP S +D R + I E ++ +H+ ++ L K
Sbjct: 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADK 208
Query: 160 LTIMVNGQFTCLGSATHL 177
IM +G+ G L
Sbjct: 209 AGIMKDGRLAAHGEPQAL 226
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 77.1 bits (190), Expect = 1e-15
Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 29/223 (13%)
Query: 352 YANSKGT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV--- 405
Y KGT A++ ++ +G+ + ++G G+GK+T + + +KPT+G V
Sbjct: 10 YTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDI 69
Query: 406 -MNHSIRDS-MDLVRSYIGYCPQF--DALNDRLTPREHL----EFYSRVRNVPSVLLNTI 457
+ H +D + VR IG QF L + RE + F + V + +
Sbjct: 70 TITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLL 129
Query: 458 VNESLNKFALGHYSDREVRTLS-----GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
++ LG R+V + S GG RK++ L NP +I LDEPT+G+DP +
Sbjct: 130 MD-------LGF--SRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS 180
Query: 513 RRFLWTCIER-AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
+R + ++ E + +IL SH+M E ++ +M G
Sbjct: 181 KRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGS 223
Score = 60.9 bits (148), Expect = 4e-10
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHN 149
+SGG RK++ L NP +I LDEPT+G+DP ++R + ++ E + +IL SH+
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205
Query: 150 MEECEALCTKLTIMVNGQ 167
M E ++ +M G
Sbjct: 206 MNEVARYADEVIVMKEGS 223
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 78.5 bits (193), Expect = 1e-15
Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 6/210 (2%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD- 415
G V S + GE F ++GL+G+GK+T ++L I+PT G + I D
Sbjct: 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDA 98
Query: 416 ----LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
+ R I Q AL +T ++ F + + + ++L + L +Y+
Sbjct: 99 ELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYA 158
Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCV 530
LSGG ++++ A AL NP ++ +DE S +DP R + ++ R +
Sbjct: 159 HSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTI 218
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
+ SH+++E + ++ IM NG+ +G+
Sbjct: 219 VFISHDLDEAMRIGDRIAIMQNGEVVQVGT 248
Score = 51.6 bits (123), Expect = 7e-07
Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Query: 42 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 101
AL +T ++ F + + + ++L + L +Y+ LSGG ++++
Sbjct: 116 ALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGL 175
Query: 102 AIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSHNMEECEALCTKL 160
A AL NP ++ +DE S +DP R + ++ R ++ SH+++E + ++
Sbjct: 176 ARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI 235
Query: 161 TIMVNGQFTCLGS 173
IM NG+ +G+
Sbjct: 236 AIMQNGEVVQVGT 248
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 76.8 bits (189), Expect = 1e-15
Identities = 59/237 (24%), Positives = 93/237 (39%), Gaps = 34/237 (14%)
Query: 342 VLVVKRLFKIYANS-----KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 396
+L V+ + Y K P + +S + GE GLLG +G GK+T ++L G
Sbjct: 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61
Query: 397 KPTSGNAYVMNHSI----RDSMDLVRSYIGYCPQ--FDALNDRLT-------PREHLEFY 443
KP G + R R + Q A+N R+T P HL
Sbjct: 62 KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSL 121
Query: 444 SRVRNVPSVLLNTIVNESLNKFAL-GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD 502
+ E L+ L +D+ R LSGG ++++ A AL P LI LD
Sbjct: 122 DESEQKARIA------ELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLD 175
Query: 503 EPTSGMDPGARRFLWTCIERAVSE-----GRCVILTSHNMEECEALCTKLTIMVNGQ 554
E S +D L I + + G + +H++ ++ C ++ +M GQ
Sbjct: 176 EAVSNLD----MVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQ 228
Score = 42.5 bits (100), Expect = 3e-04
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE----- 139
D+ R LSGG ++++ A AL P LI LDE S +D L I + +
Sbjct: 145 DKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD----MVLQAVILELLRKLQQAF 200
Query: 140 GRCVILTSHNMEECEALCTKLTIMVNGQ 167
G + +H++ ++ C ++ +M GQ
Sbjct: 201 GTAYLFITHDLRLVQSFCQRVAVMDKGQ 228
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 76.2 bits (188), Expect = 2e-15
Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 18/209 (8%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SM 414
GTK ++ +S + +G ++G NGAGK+T M++ +K SG + + S
Sbjct: 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSK 71
Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEF----YSRVRNVPSVLLNT----IVNESLNKFA 466
+L + + Q + +N RLT R+ + F YS+ R L I+NE++
Sbjct: 72 ELAKK-LSILKQENHINSRLTVRDLVGFGRFPYSQGR------LTKEDRRIINEAIEYLH 124
Query: 467 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 526
L SDR + LSGG +++ A+ L + + LDEP + +D + + R E
Sbjct: 125 LEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADE 184
Query: 527 -GRCVILTSHNMEECEALCTKLTIMVNGQ 554
G+ +++ H++ + + NG+
Sbjct: 185 LGKTIVVVLHDINFASCYSDHIVALKNGK 213
Score = 48.8 bits (117), Expect = 3e-06
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 39 QFDALNDRLTPREHLEF----YSRVRNVPSVLLNT----IVNESLNKFALGHYSDREVRT 90
Q + +N RLT R+ + F YS+ R L I+NE++ L SDR +
Sbjct: 82 QENHINSRLTVRDLVGFGRFPYSQGR------LTKEDRRIINEAIEYLHLEDLSDRYLDE 135
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149
LSGG +++ A+ L + + LDEP + +D + + R E G+ +++ H+
Sbjct: 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHD 195
Query: 150 MEECEALCTKLTIMVNGQ 167
+ + + NG+
Sbjct: 196 INFASCYSDHIVALKNGK 213
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 78.8 bits (195), Expect = 2e-15
Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 16/211 (7%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
KPA++ ++ + G+ L+G +GAGK+T +L G + PT G V +RD S +
Sbjct: 334 KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAW 393
Query: 418 RSYIGYCPQ----FDALNDRLTPREHLEFYSRVRN---VPSVLLNTIVNESLNKFALGHY 470
R I + Q F T RE++ + + + L + E + K
Sbjct: 394 RKQISWVSQNPYLFAG-----TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDT 448
Query: 471 S-DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
LSGG ++L+ A ALL L+ LDEPT+ +D + + ++ ++ +
Sbjct: 449 VIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL-AKQKT 507
Query: 530 VILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
V++ +H +E+ A ++ ++ NG+ G+
Sbjct: 508 VLVITHRLEDA-ADADRIVVLDNGRLVEQGT 537
Score = 54.2 bits (131), Expect = 1e-07
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
LSGG ++L+ A ALL L+ LDEPT+ +D + + ++ ++ + V++ +H
Sbjct: 455 AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL-AKQKTVLVITH 513
Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHLKSKS 181
+E+ A ++ ++ NG+ G+ L K
Sbjct: 514 RLEDA-ADADRIVVLDNGRLVEQGTHEELSEKQ 545
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 75.8 bits (186), Expect = 3e-15
Identities = 56/199 (28%), Positives = 98/199 (49%), Gaps = 24/199 (12%)
Query: 376 GLLGLNGAGKTTTFKMLTGAIKPTSG----NAYVMNHSIRDSMDLVRSYIGYCPQFDALN 431
GL+G NG GK+T F L+G ++P G +++S R + L R + Q
Sbjct: 31 GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL-RQQVATVFQ----- 84
Query: 432 DRLTPREHLEFYSRV--------RN--VPSVLLNTIVNESLNKFALGHYSDREVRTLSGG 481
P + + FY+ + RN VP + V+E+L H+ + ++ LS G
Sbjct: 85 ---DPEQQI-FYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHG 140
Query: 482 NKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECE 541
K++++ A AL+ + LDEPT+G+DP R + I R V++G VI++SH+++
Sbjct: 141 QKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIY 200
Query: 542 ALCTKLTIMVNGQFTCLGS 560
+ + ++ GQ G+
Sbjct: 201 EISDAVYVLRQGQILTHGA 219
Score = 60.4 bits (146), Expect = 4e-10
Identities = 37/136 (27%), Positives = 71/136 (52%)
Query: 53 LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLI 112
+ F R VP + V+E+L H+ + ++ LS G K++++ A AL+ +
Sbjct: 99 IAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYL 158
Query: 113 FLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 172
LDEPT+G+DP R + I R V++G VI++SH+++ + + ++ GQ G
Sbjct: 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218
Query: 173 SATHLKSKSMALPVSG 188
+ + + + A+ +G
Sbjct: 219 APGEVFACTEAMEQAG 234
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 74.8 bits (184), Expect = 3e-15
Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 15/196 (7%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR----DSMDLVRSY 420
++ + +GE L+G +G GK+T +++G +PTSG + I D M + ++Y
Sbjct: 4 VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNY 63
Query: 421 IGYCPQFDALNDRLTPREH--LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTL 478
+L LT RE+ L + ++ IV E + L +D+ L
Sbjct: 64 --------SLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQL 115
Query: 479 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNM 537
SGG K++++ A AL P ++ LDEP +D R L + + E R V++ +H++
Sbjct: 116 SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV 175
Query: 538 EECEALCTKLTIMVNG 553
+E L ++ ++ NG
Sbjct: 176 DEALLLSDRVVMLTNG 191
Score = 53.6 bits (129), Expect = 4e-08
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 69 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 128
IV E + L +D+ LSGG K++++ A AL P ++ LDEP +D R
Sbjct: 93 AIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN 152
Query: 129 LWTCIERAVSEGRC-VILTSHNMEECEALCTKLTIMVNG 166
L + + E R V++ +H+++E L ++ ++ NG
Sbjct: 153 LQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 74.8 bits (184), Expect = 4e-15
Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 39/234 (16%)
Query: 343 LVVKRLFKIYA--NSKGTK-PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 399
L V + K + G + P + +S V GEC L G +G+GK+T + L P
Sbjct: 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD 64
Query: 400 SGNAYV---------MNHSIRDSMDLVRSYIGYCPQF-------DALN-------DRLTP 436
G V + R+ +++ R+ IGY QF AL+ R P
Sbjct: 65 EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP 124
Query: 437 REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNP 496
RE ++ ++ + LN + E L A T SGG +++++ A + +
Sbjct: 125 RE--VARAKAADLLT-RLN--LPERLWSLAPA--------TFSGGEQQRVNIARGFIVDY 171
Query: 497 PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIM 550
P++ LDEPT+ +D R + I A + G ++ H+ E EA+ +L +
Sbjct: 172 PILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDV 225
Score = 41.6 bits (98), Expect = 4e-04
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 149
T SGG +++++ A + + P++ LDEPT+ +D R + I A + G ++ H+
Sbjct: 152 TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD 211
Query: 150 MEECEALCTKLTIM 163
E EA+ +L +
Sbjct: 212 EEVREAVADRLLDV 225
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 76.6 bits (189), Expect = 4e-15
Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 22/209 (10%)
Query: 364 QISFGV-GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV----- 417
+F + RG L G +G+GKT+ M+ G +P G + + D+ +
Sbjct: 16 DANFTLPARGIT-ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPE 74
Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSRVR----NVPSVLLNTIVNESLNKFALGHYSDR 473
+ IGY Q DA RL P H +R + +V L + H DR
Sbjct: 75 KRRIGYVFQ-DA---RLFP--HYTVRGNLRYGMWKSMRAQFDQLV-ALLG---IEHLLDR 124
Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL- 532
TLSGG K++++ ALL P L+ +DEP + +D +R + +ER E IL
Sbjct: 125 YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILY 184
Query: 533 TSHNMEECEALCTKLTIMVNGQFTCLGSA 561
SH+++E L ++ ++ NG+ G
Sbjct: 185 VSHSLDEVLRLADRVVVLENGKVKASGPL 213
Score = 61.2 bits (149), Expect = 4e-10
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 79 ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 138
+ H DR TLSGG K++++ ALL P L+ +DEP + +D +R + +ER
Sbjct: 117 GIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRD 176
Query: 139 EGRCVIL-TSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALP 185
E IL SH+++E L ++ ++ NG+ G + P
Sbjct: 177 EINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFPP 224
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 74.1 bits (182), Expect = 4e-15
Identities = 54/186 (29%), Positives = 79/186 (42%), Gaps = 15/186 (8%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
S+ +P + F V GE + G NGAGKTT ++L G + SG + +
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG- 78
Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYS-----RVRNVPSVLLNTIVNESLNKFALGH 469
D R ++ Y L L+ E+L F R + +P L IV L
Sbjct: 79 DRSR-FMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSAL-AIV-------GLAG 129
Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
Y D VR LS G K++L+ A L PL LDEP + +D + I + G
Sbjct: 130 YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGA 189
Query: 530 VILTSH 535
++T+H
Sbjct: 190 ALVTTH 195
Score = 47.5 bits (113), Expect = 5e-06
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 33 YIGYCPQFDALNDRLTPREHLEFYS-----RVRNVPSVLLNTIVNESLNKFALGHYSDRE 87
++ Y L L+ E+L F R + +P L IV L Y D
Sbjct: 83 FMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSAL-AIV-------GLAGYEDTL 134
Query: 88 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 147
VR LS G K++L+ A L PL LDEP + +D + I + G ++T+
Sbjct: 135 VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTT 194
Query: 148 H 148
H
Sbjct: 195 H 195
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 74.8 bits (184), Expect = 4e-15
Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 27/210 (12%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G + ++ +S + G+ LLG NGAGK+T +++ G + P G N +R
Sbjct: 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG-VIKRNGKLR----- 68
Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
IGY PQ L+ L P + + R+R P I+ +L + GH D ++
Sbjct: 69 ----IGYVPQKLYLDTTL-PLT-VNRFLRLR--PGTKKEDIL-PALKRVQAGHLIDAPMQ 119
Query: 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSH 535
LSGG +++ A ALL P L+ LDEPT G+D + L+ I++ E C V++ SH
Sbjct: 120 KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSH 179
Query: 536 NM-----EECEALCTKLTIMVNGQFTCLGS 560
++ + E LC +N C G+
Sbjct: 180 DLHLVMAKTDEVLC------LNHHICCSGT 203
Score = 47.0 bits (112), Expect = 8e-06
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
IGY PQ L+ L P + + R+R P I+ +L + GH D ++ LSG
Sbjct: 69 IGYVPQKLYLDTTL-PLT-VNRFLRLR--PGTKKEDIL-PALKRVQAGHLIDAPMQKLSG 123
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNM-- 150
G +++ A ALL P L+ LDEPT G+D + L+ I++ E C V++ SH++
Sbjct: 124 GETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL 183
Query: 151 ---EECEALCTKLTIMVNGQFTCLGS 173
+ E LC +N C G+
Sbjct: 184 VMAKTDEVLC------LNHHICCSGT 203
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 74.6 bits (184), Expect = 5e-15
Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 30/201 (14%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-------S 413
AVN ++ V E L+G NGAGKTT F LTG KPT G + I
Sbjct: 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIAR 79
Query: 414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN---------ESLNK 464
M +VR++ Q L +T E+L ++ + + + L + ++ E+L++
Sbjct: 80 MGVVRTF-----QHVRLFREMTVIENL-LVAQHQQLKTGLFSGLLKTPAFRRAESEALDR 133
Query: 465 FA-------LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
A L +++R+ L+ G +R+L A ++ P ++ LDEP +G++P + L
Sbjct: 134 AATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELD 193
Query: 518 TCIERAVSE-GRCVILTSHNM 537
I +E V+L H+M
Sbjct: 194 ELIAELRNEHNVTVLLIEHDM 214
Score = 41.5 bits (98), Expect = 6e-04
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 75 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 134
L + L +++R+ L+ G +R+L A ++ P ++ LDEP +G++P + L I
Sbjct: 138 LERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIA 197
Query: 135 RAVSE-GRCVILTSHNM 150
+E V+L H+M
Sbjct: 198 ELRNEHNVTVLLIEHDM 214
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 76.8 bits (189), Expect = 8e-15
Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 14/230 (6%)
Query: 338 DSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
+ GDV++ R + + V+ +SF + RGE G+ GL GAG+T + L GA
Sbjct: 252 EIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP 311
Query: 398 PT-SGNAYVMNH--SIRDSMDLVRSYIGYCPQFDALNDRLTPR---------EHLEFYSR 445
GN ++ IR+ +R+ I P+ D + P L+ +
Sbjct: 312 GKFEGNVFINGKPVDIRNPAQAIRAGIAMVPE-DRKRHGIVPILGVGKNITLSVLKSFCF 370
Query: 446 VRNVPSVLLNTIVNESLNKFALGHYS-DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 504
+ + I+ ++ + + S + LSGGN++K A LL NP ++ LDEP
Sbjct: 371 KMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEP 430
Query: 505 TSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
T G+D GA+ ++ I + EG +I+ S + E L ++ ++ G+
Sbjct: 431 TRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGK 480
Score = 58.3 bits (141), Expect = 5e-09
Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 39/222 (17%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAY-----VMNH 408
G A++ I V GEC GL G NGAGK+T K+L+G + P G Y +
Sbjct: 12 GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGTWDGEIYWSGSPLKAS 70
Query: 409 SIRDSMDLVRSYIGYCPQFDALNDRLTPREHL----------------EFYSRVRNVPSV 452
+IRD+ R+ I Q L L+ E++ Y R +N+
Sbjct: 71 NIRDTE---RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRE 127
Query: 453 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
L N + R V GG ++ + A AL L+ LDEP+S +
Sbjct: 128 LQLDADNVT-----------RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKE 176
Query: 513 RRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
L I + G + SH + E +A+C + ++ +GQ
Sbjct: 177 TEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
Score = 53.7 bits (129), Expect = 1e-07
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGGN++K A LL NP ++ LDEPT G+D GA+ ++ I + EG +I+ S +
Sbjct: 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL 463
Query: 151 EECEALCTKLTIMVNGQ 167
E L ++ ++ G+
Sbjct: 464 AEVLGLSDRVLVIGEGK 480
Score = 43.3 bits (102), Expect = 3e-04
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
R V GG ++ + A AL L+ LDEP+S + L I + G +
Sbjct: 137 RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVY 196
Query: 146 TSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMA 183
SH + E +A+C + ++ +GQ H+ +K M+
Sbjct: 197 ISHKLNEVKAVCDTICVIRDGQ--------HVATKDMS 226
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 76.5 bits (189), Expect = 1e-14
Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 28/213 (13%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-PTSGNAYVMNH--SIRDSMDLVR 418
V+ +SF + RGE G+ GL GAG+T + L GA G ++ IR+ +
Sbjct: 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337
Query: 419 SYIGYCPQFDALNDRLTPREH----------------LEFYSRVRNVPSVLLNTIVNESL 462
I P+ DR + L+ ++ + + ES+
Sbjct: 338 QGIAMVPE-----DR---KRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESI 389
Query: 463 NKFALGHYS-DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
+ + S + + LSGGN++K A LL NP ++ LDEPT G+D GA+ ++ I
Sbjct: 390 QRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLIN 449
Query: 522 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
+ V +G +I+ S + E L ++ +M G+
Sbjct: 450 QLVQQGVAIIVISSELPEVLGLSDRVLVMHEGK 482
Score = 56.5 bits (137), Expect = 2e-08
Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 39/217 (17%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAY-----VMNHSIRD 412
A++ +S V GE L G NGAGK+T K+L+G + P G + +IRD
Sbjct: 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGTYEGEIIFEGEELQASNIRD 78
Query: 413 SMDLVRSYIGYCPQFDALNDRLTPREHL---------------EFYSRVRNVPSVLLNTI 457
+ R+ I Q AL L+ E++ Y R +
Sbjct: 79 TE---RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQ---------- 125
Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
+ L + L V L G ++ + A AL L+ LDEPT+ + L
Sbjct: 126 --KLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLL 183
Query: 518 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
I + G I SH + E +A+ + ++ +G+
Sbjct: 184 DIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
Score = 56.1 bits (136), Expect = 3e-08
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGGN++K A LL NP ++ LDEPT G+D GA+ ++ I + V +G +I+ S +
Sbjct: 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL 465
Query: 151 EECEALCTKLTIMVNGQ 167
E L ++ +M G+
Sbjct: 466 PEVLGLSDRVLVMHEGK 482
Score = 37.2 bits (87), Expect = 0.024
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 88 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 147
V L G ++ + A AL L+ LDEPT+ + L I + G I S
Sbjct: 141 VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYIS 200
Query: 148 HNMEECEALCTKLTIMVNGQ 167
H + E +A+ + ++ +G+
Sbjct: 201 HKLNEVKAISDTICVIRDGR 220
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 74.5 bits (183), Expect = 1e-14
Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 24/243 (9%)
Query: 340 GDVLVVKRLFKIYANSKGTKP--AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
+L VK L+ ++ + K A+N IS+ + + + ++G +G+GK+T G IK
Sbjct: 19 DIILRVKNLYCVF-DEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK 77
Query: 398 PTSGNAYVMNHSIRDSMDLVRSYIGYCPQ----FDALNDRLT-----PREHLEFYSRVRN 448
G V + I D + + F L R++ P L F +
Sbjct: 78 SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQL-FKDTIEK 136
Query: 449 ---VPSVLLNTIVNES-------LNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPP 497
V L +E+ LNK L Y +R LSGG KR+++ A L P
Sbjct: 137 DIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPE 196
Query: 498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTC 557
++ DEPT+G+DP + I A + + V + +H ME + ++ +M G+
Sbjct: 197 ILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256
Query: 558 LGS 560
G+
Sbjct: 257 TGT 259
Score = 63.3 bits (154), Expect = 7e-11
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 75 LNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 133
LNK L Y +R LSGG KR+++ A L P ++ DEPT+G+DP + I
Sbjct: 160 LNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLI 219
Query: 134 ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS-------ATHLKSKSMALP- 185
A + + V + +H ME + ++ +M G+ G+ + S S+ +P
Sbjct: 220 LDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279
Query: 186 --VSGNDLGRGDPVRSEL 201
NDL + DP +L
Sbjct: 280 VIQVINDLIKKDPKYKKL 297
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 72.7 bits (179), Expect = 2e-14
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 15/214 (7%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD- 415
GTK +N +S + G+ L+G NG GK+T K + P SG ++ + I
Sbjct: 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSR 72
Query: 416 -LVRSYIGYCPQFDALNDRLTPRE--------HLEFYSRVRNVPSVLLNTIVNESLNKFA 466
L R + PQ + +T RE L + R+ S N VN+++ +
Sbjct: 73 QLAR-RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL----SAEDNARVNQAMEQTR 127
Query: 467 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 526
+ H +DR + LSGG +++ A+ L + P++ LDEPT+ +D + L + ++
Sbjct: 128 INHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ 187
Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
G+ V+ H++ + C L ++ NG G+
Sbjct: 188 GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
Score = 49.6 bits (119), Expect = 1e-06
Identities = 27/104 (25%), Positives = 55/104 (52%)
Query: 70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 129
VN+++ + + H +DR + LSGG +++ A+ L + P++ LDEPT+ +D + L
Sbjct: 118 RVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVEL 177
Query: 130 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
+ ++G+ V+ H++ + C L ++ NG G+
Sbjct: 178 MRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 75.3 bits (185), Expect = 3e-14
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 18/189 (9%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
A+N ISF V GE G++GLNG+GK+T ++ G P G I+ S L+
Sbjct: 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-----DIKGSAALIAIS 93
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
G LN +LT E++E + + + I+ E + +G + + V+T S
Sbjct: 94 SG-------LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSS 146
Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA---VSEGRCVILTSHNM 537
G K +L AI++ NP ++ +DE S G + F C+++ +G+ + SH++
Sbjct: 147 GMKSRLGFAISVHINPDILVIDEALS---VGDQTFTKKCLDKMNEFKEQGKTIFFISHSL 203
Query: 538 EECEALCTK 546
+ ++ CTK
Sbjct: 204 SQVKSFCTK 212
Score = 44.1 bits (104), Expect = 2e-04
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 43 LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA 102
LN +LT E++E + + + I+ E + +G + + V+T S G K +L A
Sbjct: 96 LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFA 155
Query: 103 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA---VSEGRCVILTSHNMEECEALCTK 159
I++ NP ++ +DE S G + F C+++ +G+ + SH++ + ++ CTK
Sbjct: 156 ISVHINPDILVIDEALS---VGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTK 212
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 74.2 bits (183), Expect = 3e-14
Identities = 52/214 (24%), Positives = 99/214 (46%), Gaps = 16/214 (7%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI---- 410
S K ++ + + GE LLG +G GKTT +++ G P SG + I
Sbjct: 23 SFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP 82
Query: 411 ---RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL 467
R + +SY AL +T E++ F R++ P+ + V E+L L
Sbjct: 83 AENRHVNTVFQSY--------ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQL 134
Query: 468 GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE- 526
++ R+ LSGG +++++ A A++ P ++ LDE S +D R+ + ++ +
Sbjct: 135 EEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL 194
Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
G + +H+ EE + ++ +M +G+ G+
Sbjct: 195 GITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
Score = 48.4 bits (116), Expect = 5e-06
Identities = 32/133 (24%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 42 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 101
AL +T E++ F R++ P+ + V E+L L ++ R+ LSGG +++++
Sbjct: 96 ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAI 155
Query: 102 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKL 160
A A++ P ++ LDE S +D R+ + ++ + G + +H+ EE + ++
Sbjct: 156 ARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI 215
Query: 161 TIMVNGQFTCLGS 173
+M +G+ G+
Sbjct: 216 VVMRDGRIEQDGT 228
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 75.2 bits (185), Expect = 3e-14
Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 35/217 (16%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMD 415
G KP + ISF + GE ++G +G+GK+T K+L PTSG + IRD S+D
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLD 399
Query: 416 LVRSYIGYCPQFDAL------------NDRLTPREHLE------FYSRVRNVPSVLLNTI 457
+R IG Q L T E E + + N+P +TI
Sbjct: 400 SLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPD-GYDTI 458
Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
V E G LSGG +++L+ A ALL NPP++ LDE TS +D +
Sbjct: 459 VGER------G-------VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQ 505
Query: 518 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
+++ + +GR ++ +H + ++ ++ NG+
Sbjct: 506 DALKK-LLKGRTTLIIAHRLST-IKNADRIIVLDNGR 540
Score = 45.1 bits (107), Expect = 8e-05
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
LSGG +++L+ A ALL NPP++ LDE TS +D + +++ + +GR ++ +H
Sbjct: 464 VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKK-LLKGRTTLIIAH 522
Query: 149 NMEECEALCTKLTIMVNGQ 167
+ ++ ++ NG+
Sbjct: 523 RLST-IKNADRIIVLDNGR 540
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 72.4 bits (177), Expect = 4e-14
Identities = 55/248 (22%), Positives = 114/248 (45%), Gaps = 36/248 (14%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI---KP 398
++ V++L K + + A++ + + GE LLG +G+GK+T + L+G I K
Sbjct: 4 IIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKS 59
Query: 399 TSGNAYVMNHSIRDSMDLV------RSYIGYCPQFDALNDRLTPREH------------- 439
+ ++ +++ L R+ GY Q L +RL+ E+
Sbjct: 60 AGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWR 119
Query: 440 --LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP 497
+++R + ++ ++L + + H++ + V TLSGG +++++ A AL+
Sbjct: 120 TCFSWFTREQKQRAL-------QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAK 172
Query: 498 LIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT 556
+I DEP + +DP AR + T + ++G V++T H ++ C ++ + G
Sbjct: 173 VILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF 232
Query: 557 CLGSATHL 564
GS+
Sbjct: 233 YDGSSQQF 240
Score = 52.7 bits (126), Expect = 2e-07
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWT 131
++L + + H++ + V TLSGG +++++ A AL+ +I DEP + +DP AR + T
Sbjct: 135 QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194
Query: 132 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
+ ++G V++T H ++ C ++ + G GS+
Sbjct: 195 LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 71.7 bits (176), Expect = 6e-14
Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 6/204 (2%)
Query: 351 IYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 410
+YA+ G KPA+ I+ + GE +LG +G GKTT ++ G + G+ + +
Sbjct: 7 LYADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV 65
Query: 411 RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY 470
+ G Q + L ++++ F ++ V + I ++ L K L
Sbjct: 66 EGP----GAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGA 121
Query: 471 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRC 529
R + LSGG ++++ A AL NP L+ LDEP +D R + T + + E G+
Sbjct: 122 EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQ 181
Query: 530 VILTSHNMEECEALCTKLTIMVNG 553
V+L +H++EE + T+L ++ G
Sbjct: 182 VLLITHDIEEAVFMATELVLLSPG 205
Score = 50.9 bits (122), Expect = 5e-07
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 5/128 (3%)
Query: 44 NDRLTP----REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKL 99
N+ L P ++++ F ++ V + I ++ L K L R + LSGG ++++
Sbjct: 78 NEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRV 137
Query: 100 STAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCT 158
A AL NP L+ LDEP +D R + T + + E G+ V+L +H++EE + T
Sbjct: 138 GIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMAT 197
Query: 159 KLTIMVNG 166
+L ++ G
Sbjct: 198 ELVLLSPG 205
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 71.0 bits (174), Expect = 8e-14
Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 16/219 (7%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHS------- 409
G A+ I+ GE LLG +GAGK++ ++L P SG + +
Sbjct: 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP 72
Query: 410 ----IRDSMDLVRSYIGYCPQFDALNDRLTPREHL-EFYSRVRNVPSVLLNTIVNESLNK 464
IRD +R +G Q L LT +E+L E RV + + L +
Sbjct: 73 SDKAIRD----LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKR 128
Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
L Y+DR LSGG +++++ A AL+ P ++ DEPT+ +DP + + I+
Sbjct: 129 LRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH 563
G ++ +H +E +++ M NG G A+
Sbjct: 189 ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
Score = 53.3 bits (128), Expect = 8e-08
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 47 LTPREHL-EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL 105
LT +E+L E RV + + L + L Y+DR LSGG +++++ A AL
Sbjct: 97 LTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARAL 156
Query: 106 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVN 165
+ P ++ DEPT+ +DP + + I+ G ++ +H +E +++ M N
Sbjct: 157 MMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMEN 216
Query: 166 GQFTCLGSATH 176
G G A+
Sbjct: 217 GHIVEQGDASC 227
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 72.1 bits (178), Expect = 9e-14
Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 19/221 (8%)
Query: 346 KRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV 405
K + K++ T A+N +S + GE FG++G +GAGK+T + + +PTSG V
Sbjct: 5 KNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLV 64
Query: 406 MNHSIRDSMDLV----------RSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLL 454
D DL R IG Q F+ L+ R T +++ + P +
Sbjct: 65 ------DGQDLTALSEKELRKARRQIGMIFQHFNLLSSR-TVFDNVALPLELAGTPKAEI 117
Query: 455 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
V E L L +DR LSGG K++++ A AL NP ++ DE TS +DP R
Sbjct: 118 KARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177
Query: 515 FLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
+ ++ E G ++L +H M+ + +C ++ ++ G+
Sbjct: 178 SILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGR 218
Score = 36.7 bits (86), Expect = 0.024
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 61 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 120
P + V E L L +DR LSGG K++++ A AL NP ++ DE TS
Sbjct: 111 GTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 121 MDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 167
+DP R + ++ E G ++L +H M+ + +C ++ ++ G+
Sbjct: 171 LDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGR 218
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 69.9 bits (172), Expect = 1e-13
Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 22/204 (10%)
Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
+K L K + G + I V +GE ++G +G+GK+T + + +P SG
Sbjct: 3 IKNLHKSF----GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 405 VMNHSIRDS---MDLVRSYIGYC-------PQFDAL-NDRLTPREHLEFYSRVRNVPSVL 453
+ + D ++ +R +G P L N L P +V+ +
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPI-------KVKGMSKAE 111
Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
E L K L +D LSGG +++++ A AL NP ++ DEPTS +DP
Sbjct: 112 AEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171
Query: 514 RFLWTCIERAVSEGRCVILTSHNM 537
+ ++ EG +++ +H M
Sbjct: 172 GEVLDVMKDLAEEGMTMVVVTHEM 195
Score = 48.3 bits (116), Expect = 2e-06
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 132
E L K L +D LSGG +++++ A AL NP ++ DEPTS +DP +
Sbjct: 118 ELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV 177
Query: 133 IERAVSEGRCVILTSHNM 150
++ EG +++ +H M
Sbjct: 178 MKDLAEEGMTMVVVTHEM 195
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 71.3 bits (174), Expect = 1e-13
Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 7/216 (3%)
Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-----NAYVMNH 408
NS A+ I V +G L+G G+GK+T + L G ++PT G + V +
Sbjct: 14 NSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSST 73
Query: 409 SIRDSMDLVRSYIGYCPQF-DALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL 467
S + + VR +G QF ++ T + + F + +P I E L L
Sbjct: 74 SKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGL 133
Query: 468 G-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 526
+ ++ LSGG R+++ A L P ++ LDEPT+G+DP AR + E
Sbjct: 134 ADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS 193
Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSAT 562
G+ V+L +H M++ + ++ G G+ +
Sbjct: 194 GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229
Score = 52.8 bits (126), Expect = 2e-07
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG R+++ A L P ++ LDEPT+G+DP AR + E G+ V+L +H M
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM 204
Query: 151 EECEALCTKLTIMVNGQFTCLGSATH-------LKSKSMALP 185
++ + ++ G G+ + LK+ + +P
Sbjct: 205 DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVP 246
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 70.3 bits (172), Expect = 1e-13
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 27/212 (12%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SM 414
G A++++S + +GE L+G NGAGKTT L G + TSG I D +
Sbjct: 16 GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTA 75
Query: 415 DLVRSYIGYCPQFDALNDRLTPREHL----------EFYSRVRNVPSVLLNTIVNESLNK 464
++R + P+ + R+T E+L +F R++ V +
Sbjct: 76 KIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRL-------- 127
Query: 465 FALGHYSDREVR--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
+ R R T+SGG ++ L+ AL+ P L+ LDEP+ G+ P + ++ IE+
Sbjct: 128 -----HERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ 182
Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
+G + L N + L + ++ NG
Sbjct: 183 LREQGMTIFLVEQNANQALKLADRGYVLENGH 214
Score = 45.3 bits (107), Expect = 3e-05
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 149
T+SGG ++ L+ AL+ P L+ LDEP+ G+ P + ++ IE+ +G + L N
Sbjct: 137 TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQN 196
Query: 150 MEECEALCTKLTIMVNGQ 167
+ L + ++ NG
Sbjct: 197 ANQALKLADRGYVLENGH 214
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 69.9 bits (172), Expect = 1e-13
Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 34/199 (17%)
Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SM 414
KP + I+F + GE ++G GAGKTT +L P G + IRD S
Sbjct: 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISR 72
Query: 415 DLVRSYIGYCPQ---------FD--ALNDRLTPREHLEFYSR-------VRNVPSVLLNT 456
+RS IG Q + L E + ++ + +P+ +T
Sbjct: 73 KSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNG-YDT 131
Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
++ E+ G LS G ++ L+ A A+L +P ++ LDE TS +D + +
Sbjct: 132 VLGEN------GG-------NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 517 WTCIERAVSEGRCVILTSH 535
+E+ + +GR I+ +H
Sbjct: 179 QEALEK-LMKGRTSIIIAH 196
Score = 44.1 bits (105), Expect = 6e-05
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
LS G ++ L+ A A+L +P ++ LDE TS +D + + +E+ + +GR I+ +H
Sbjct: 139 NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEK-LMKGRTSIIIAH 196
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 70.2 bits (173), Expect = 2e-13
Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 17/218 (7%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G K + IS V +GE ++G +G+GK+T + L G +P SG+ V + D D+
Sbjct: 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDI 72
Query: 417 --VRSYIGYCPQ----F---DAL-NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFA 466
+R +G Q F L N L P +V+ + E L K
Sbjct: 73 LKLRRKVGMVFQQFNLFPHLTVLENVTLAPV-------KVKKLSKAEAREKALELLEKVG 125
Query: 467 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 526
L +D LSGG +++++ A AL +P ++ DEPTS +DP + ++ E
Sbjct: 126 LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185
Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
G +I+ +H M + ++ M G+ G
Sbjct: 186 GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
Score = 51.7 bits (125), Expect = 2e-07
Identities = 27/103 (26%), Positives = 47/103 (45%)
Query: 75 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 134
L K L +D LSGG +++++ A AL +P ++ DEPTS +DP + ++
Sbjct: 121 LEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK 180
Query: 135 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
EG +I+ +H M + ++ M G+ G
Sbjct: 181 DLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 70.2 bits (172), Expect = 2e-13
Identities = 63/236 (26%), Positives = 97/236 (41%), Gaps = 35/236 (14%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
+L V L K Y KG +SF + GE G++G +G+GK+T L G + P G
Sbjct: 3 LLQVSGLSKSYGGGKG----CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHG 58
Query: 402 NAYVMNHSIR----------DSMDLVRSYIGYCPQFDALNDRLTPREHLEF-YSRVRNVP 450
A + S + L+R+ G+ Q PR+ L S N+
Sbjct: 59 TATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ--------NPRDGLRMRVSAGANIG 110
Query: 451 SVLLNTIVNESLNKFALGHYSDREV-----------RTLSGGNKRKLSTAIALLGNPPLI 499
L+ N A EV R SGG +++L A L+ P L+
Sbjct: 111 ERLMAIGARHYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLV 170
Query: 500 FLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
F+DEPT G+D + L + V + G VI+ +H++ L +L +M G+
Sbjct: 171 FMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGR 226
Score = 51.0 bits (122), Expect = 5e-07
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 143
D R SGG +++L A L+ P L+F+DEPT G+D + L + V + G V
Sbjct: 143 DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAV 202
Query: 144 ILTSHNMEECEALCTKLTIMVNGQ 167
I+ +H++ L +L +M G+
Sbjct: 203 IIVTHDLGVARLLAQRLLVMQQGR 226
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 70.0 bits (171), Expect = 2e-13
Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 25/225 (11%)
Query: 349 FKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNA 403
+ ++ G K AV ++ + + + ++G +G GKTT + + G
Sbjct: 6 IENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKI 65
Query: 404 YVMNHSIRDSMD---LVRSYIGYCPQFDALNDRLTP-----REHLEFYSRVRNVPSV-LL 454
Y I D R +G Q + TP +++ F R+ V S L
Sbjct: 66 YFKGQDIYDPQLDVTEYRKKVGMVFQ------KPTPFPMSIYDNVAFGPRIHGVKSKHKL 119
Query: 455 NTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 510
+ IV ESL K AL ++ LSGG +++L A AL P +I LDEPTS +DP
Sbjct: 120 DRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP 179
Query: 511 GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 555
A + + +E +SE +++ +HN+ + + + M G+
Sbjct: 180 IATQRIEKLLEE-LSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223
Score = 59.6 bits (144), Expect = 7e-10
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 67 LNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
L+ IV ESL K AL ++ LSGG +++L A AL P +I LDEPTS +D
Sbjct: 119 LDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178
Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 168
P A + + +E +SE +++ +HN+ + + + M G+
Sbjct: 179 PIATQRIEKLLEE-LSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 72.5 bits (179), Expect = 2e-13
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 19/140 (13%)
Query: 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDAL 430
GE G++G NG GKTT K+L G +KP G ++ ++ I Y PQ+
Sbjct: 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGE---VDPELK---------ISYKPQY--- 408
Query: 431 NDRLTPREHLEFYSRVRNVPSVLLNTIVN-ESLNKFALGHYSDREVRTLSGGNKRKLSTA 489
+ P +R++ L ++ E + L D+ V+ LSGG ++++ A
Sbjct: 409 ---IKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIA 465
Query: 490 IALLGNPPLIFLDEPTSGMD 509
L + L LDEP++ +D
Sbjct: 466 ACLSRDADLYLLDEPSAHLD 485
Score = 58.3 bits (142), Expect = 7e-09
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 33/187 (17%)
Query: 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV-RSYIG-----YC 424
G+ G+LG NG GKTT K+L+G + P G+ + S D V + + G Y
Sbjct: 98 EGKVTGILGPNGIGKTTAVKILSGELIPNLGD-----YEEEPSWDEVLKRFRGTELQNY- 151
Query: 425 PQFDAL-NDRLTPR---EHLEFYSRV--RNVPSVLLNT----IVNESLNKFALGHYSDRE 474
F L N + ++++ +V V +L ++E + + L + DR+
Sbjct: 152 --FKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRD 209
Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR----RFLWTCIERAVSEGRCV 530
+ LSGG ++++ A ALL + F DEPTS +D R R + R ++EG+ V
Sbjct: 210 ISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI-----RELAEGKYV 264
Query: 531 ILTSHNM 537
++ H++
Sbjct: 265 LVVEHDL 271
Score = 44.0 bits (105), Expect = 2e-04
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR--- 126
++E + + L + DR++ LSGG ++++ A ALL + F DEPTS +D R
Sbjct: 192 KLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNV 251
Query: 127 -RFLWTCIERAVSEGRCVILTSHNM 150
R + R ++EG+ V++ H++
Sbjct: 252 ARLI-----RELAEGKYVLVVEHDL 271
Score = 41.3 bits (98), Expect = 0.001
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
+E + L D+ V+ LSGG ++++ A L + L LDEP++ +D
Sbjct: 435 SEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 69.4 bits (170), Expect = 3e-13
Identities = 50/219 (22%), Positives = 89/219 (40%), Gaps = 7/219 (3%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
++ V L K +G + + V RGE ++G +G+GK+T +L G P+SG
Sbjct: 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG 65
Query: 402 NAYVMNHSIRD-----SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT 456
++ + L ++G+ Q L LT E++ +R S
Sbjct: 66 EVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRA 125
Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRF 515
L LG LSGG +++++ A A G P ++F DEPT +D +
Sbjct: 126 GAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI 185
Query: 516 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
G ++L +H+ + A C + + +G+
Sbjct: 186 ADLLFALNRERGTTLVLVTHD-PQLAARCDRQLRLRSGR 223
Score = 39.7 bits (93), Expect = 0.002
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 80 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWTCIERAVS 138
L HY LSGG +++++ A A G P ++F DEPT +D +
Sbjct: 140 LTHYP----AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE 195
Query: 139 EGRCVILTSHNMEECEALCTKLTIMVNGQ 167
G ++L +H+ + A C + + +G+
Sbjct: 196 RGTTLVLVTHD-PQLAARCDRQLRLRSGR 223
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 70.5 bits (173), Expect = 4e-13
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 19/181 (10%)
Query: 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 400
+ +V+K + K + G+ ++ ++ + +G LLG +G GKTT +++ G KPT
Sbjct: 5 NFVVLKNITKRF----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE 60
Query: 401 GNAY-----VMNHSI--RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL 453
G + V + SI RD + +SY AL ++ E++ + ++ VP
Sbjct: 61 GQIFIDGEDVTHRSIQQRDICMVFQSY--------ALFPHMSLGENVGYGLKMLGVPKEE 112
Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
V E+L L + DR V +SGG +++++ A AL+ P ++ DEP S +D R
Sbjct: 113 RKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLR 172
Query: 514 R 514
R
Sbjct: 173 R 173
Score = 43.2 bits (102), Expect = 2e-04
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 58 RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 117
++ VP V E+L L + DR V +SGG +++++ A AL+ P ++ DEP
Sbjct: 104 KMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163
Query: 118 TSGMDPGARR 127
S +D RR
Sbjct: 164 LSNLDANLRR 173
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 69.1 bits (169), Expect = 5e-13
Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 31/236 (13%)
Query: 327 RKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKT 386
R +ER++ D L+ K + T A++ IS G+ GL+G+NG+GK+
Sbjct: 18 RTNKERMK------DALIPK-------HKNKTFFALDDISLKAYEGDVIGLVGINGSGKS 64
Query: 387 TTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV 446
T ++ G++ PT G + + ++ I L+ +LT E++EF
Sbjct: 65 TLSNIIGGSLSPTVGK-------VDRNGEVSVIAIS-----AGLSGQLTGIENIEFKMLC 112
Query: 447 RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
+ + + + LG + + V+ S G + KL +I + NP ++ +DE S
Sbjct: 113 MGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALS 172
Query: 507 GMDPGARRFLWTCIERAV---SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLG 559
G + F C+++ + + + SHN+ + CTK+ + G+ G
Sbjct: 173 ---VGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYG 225
Score = 41.3 bits (97), Expect = 6e-04
Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 43 LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA 102
L+ +LT E++EF + + + + LG + + V+ S G + KL +
Sbjct: 96 LSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFS 155
Query: 103 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV---SEGRCVILTSHNMEECEALCTK 159
I + NP ++ +DE S G + F C+++ + + + SHN+ + CTK
Sbjct: 156 INITVNPDILVIDEALS---VGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTK 212
Query: 160 LTIMVNGQFTCLG 172
+ + G+ G
Sbjct: 213 IAWIEGGKLKDYG 225
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 71.2 bits (175), Expect = 6e-13
Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDAL 430
GE G+LG NG GKTT K+L G IKP G DL + Y PQ+ +
Sbjct: 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEG----------SEEDLK---VSYKPQYISP 412
Query: 431 NDRLTPREHLEFYSRVRNVPSVLLNT-IVNESLNKFALGHYSDREVRTLSGGNKRKLSTA 489
+ T + L + S ++ E + L +R V LSGG ++++ A
Sbjct: 413 DYDGTVEDLLR-----SAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIA 467
Query: 490 IALLGNPPLIFLDEPTSGMD 509
AL L LDEP++ +D
Sbjct: 468 AALSREADLYLLDEPSAYLD 487
Score = 57.7 bits (140), Expect = 9e-09
Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 44/193 (22%)
Query: 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDAL 430
G+ G+LG NG GK+T K+L G +KP G + P +D +
Sbjct: 99 PGKVVGILGPNGIGKSTALKILAGELKPNLGRY--------EDP----------PSWDEV 140
Query: 431 NDRLTPREHLEFYSRVRN--------------VPSVLLNTI------------VNESLNK 464
R E ++ ++ +P V+ + +E + +
Sbjct: 141 IKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVER 200
Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
L + DR+V LSGG ++++ A ALL + + F DEP+S +D R I
Sbjct: 201 LGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELA 260
Query: 525 SEGRCVILTSHNM 537
+G+ VI+ H++
Sbjct: 261 EDGKYVIVVEHDL 273
Score = 42.7 bits (101), Expect = 5e-04
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 129
+E + + L + DR+V LSGG ++++ A ALL + + F DEP+S +D R
Sbjct: 193 KFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNA 252
Query: 130 WTCIERAVSEGRCVILTSHNM 150
I +G+ VI+ H++
Sbjct: 253 ARVIRELAEDGKYVIVVEHDL 273
Score = 40.7 bits (96), Expect = 0.002
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT-IVNESLNKFALGHYSDREVRTLS 92
+ Y PQ+ + + T + L + S ++ E + L +R V LS
Sbjct: 403 VSYKPQYISPDYDGTVEDLLR-----SAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELS 457
Query: 93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
GG ++++ A AL L LDEP++ +D
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLD 487
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 67.8 bits (166), Expect = 1e-12
Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 15/139 (10%)
Query: 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDAL 430
E G+LG NG GKTT KML G +KP G+ ++ + Y PQ+
Sbjct: 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI-----------EIELDTVSYKPQYIKA 72
Query: 431 NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAI 490
+ T R+ L S ++ + E + DREV LSGG ++++ A
Sbjct: 73 DYEGTVRDLL--SSITKDFYTH--PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAA 128
Query: 491 ALLGNPPLIFLDEPTSGMD 509
L + + LDEP++ +D
Sbjct: 129 CLSKDADIYLLDEPSAYLD 147
Score = 37.8 bits (88), Expect = 0.010
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 27 IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR 86
I+ L + Y PQ+ + T R+ L S ++ + E + DR
Sbjct: 56 IEIELDTVSYKPQYIKADYEGTVRDLL--SSITKDFYTH--PYFKTEIAKPLQIEQILDR 111
Query: 87 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
EV LSGG ++++ A L + + LDEP++ +D
Sbjct: 112 EVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 67.9 bits (166), Expect = 1e-12
Identities = 53/215 (24%), Positives = 97/215 (45%), Gaps = 5/215 (2%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
S G + V+ + G GLLG NG+GK+T ++L GA++P +G + +
Sbjct: 10 SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS 69
Query: 415 DLVRS-YIGYCPQFDALNDRLTPREHLEF----YSRVRNVPSVLLNTIVNESLNKFALGH 469
R+ + Q LT R+ + + + S +V+ +L + L H
Sbjct: 70 RRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH 129
Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
+DR++ TLSGG ++++ A AL P L+ LDEPT+ +D A+ + + G
Sbjct: 130 LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVT 189
Query: 530 VILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
V+ H++ + C + ++ G+ G +
Sbjct: 190 VVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224
Score = 54.1 bits (130), Expect = 5e-08
Identities = 32/121 (26%), Positives = 61/121 (50%)
Query: 70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 129
+V+ +L + L H +DR++ TLSGG ++++ A AL P L+ LDEPT+ +D A+
Sbjct: 117 VVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLET 176
Query: 130 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGN 189
+ + G V+ H++ + C + ++ G+ G + + ++ V G
Sbjct: 177 LALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVYGV 236
Query: 190 D 190
D
Sbjct: 237 D 237
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 69.9 bits (172), Expect = 1e-12
Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 28/216 (12%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 418
P + +S + GE LLG G GK+T ++LT A P G + I D S +R
Sbjct: 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALR 413
Query: 419 SYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV-- 475
I Q + L R++L + P+ ++ E L + L + +
Sbjct: 414 QAISVVSQRVHLFSATL--RDNLLLAA-----PNASDEALI-EVLQQVGLEKLLEDDKGL 465
Query: 476 --------RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG 527
R LSGG +R+L A ALL + PL+ LDEPT G+D R + + ++
Sbjct: 466 NAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL-AEHAQN 524
Query: 528 RCVILTSHN---MEECEALCTKLTIMVNGQFTCLGS 560
+ V++ +H +E+ + +C +M NGQ G+
Sbjct: 525 KTVLMITHRLTGLEQFDRIC----VMDNGQIIEQGT 556
Score = 57.1 bits (139), Expect = 1e-08
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
R LSGG +R+L A ALL + PL+ LDEPT G+D R + + ++ + V++ +H
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL-AEHAQNKTVLMITH 532
Query: 149 N---MEECEALCTKLTIMVNGQFTCLGS 173
+E+ + +C +M NGQ G+
Sbjct: 533 RLTGLEQFDRIC----VMDNGQIIEQGT 556
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 65.1 bits (160), Expect = 2e-12
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L ++ + K + G A++ +S V RGE LLG NGAGK+T K+L+G KP SG
Sbjct: 1 LELRGITKRF----GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE 56
Query: 403 AY-----VMNHSIRDSMDL 416
V S RD+
Sbjct: 57 ILVDGKEVSFASPRDARRA 75
Score = 62.1 bits (152), Expect = 2e-11
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LS G ++ + A AL N L+ LDEPT+ + P L+ I R ++G VI SH +
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 151 EECEALCTKLTIMVNGQ 167
+E + ++T++ +G+
Sbjct: 143 DEVFEIADRVTVLRDGR 159
Score = 62.1 bits (152), Expect = 2e-11
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 537
LS G ++ + A AL N L+ LDEPT+ + P L+ I R ++G VI SH +
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 538 EECEALCTKLTIMVNGQ 554
+E + ++T++ +G+
Sbjct: 143 DEVFEIADRVTVLRDGR 159
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 65.7 bits (160), Expect = 3e-12
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 8/157 (5%)
Query: 379 GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPRE 438
G NG GK++ +M+ G ++P+SGN Y N +I ++ + Y Y L +T E
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNIN---NIAKPYCTYIGHNLGLKLEMTVFE 89
Query: 439 HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPL 498
+L+F+S + N S + +++ F L D + +LS G ++ ++ A + L
Sbjct: 90 NLKFWSEIYN--SA---ETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL 144
Query: 499 IFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
LDE + + R L I + G V+L+SH
Sbjct: 145 WLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181
Score = 36.8 bits (85), Expect = 0.013
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Query: 33 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
Y Y L +T E+L+F+S + N S + +++ F L D + +LS
Sbjct: 71 YCTYIGHNLGLKLEMTVFENLKFWSEIYN--SA---ETLYAAIHYFKLHDLLDEKCYSLS 125
Query: 93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
G ++ ++ A + L LDE + + R L I + G V+L+SH
Sbjct: 126 SGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 69.0 bits (169), Expect = 3e-12
Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 37/231 (16%)
Query: 322 EEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGT-KPAVNQISFGVGRGECFGLLGL 380
E+D + ER GDV + G +PA++ IS + GE L+G
Sbjct: 316 EKDTGTRAIERAR-----GDV----EFRNVTFRYPGRDRPALDSISLVIEPGETVALVGR 366
Query: 381 NGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQ----FD---ALND 432
+G+GK+T ++ +P SG + H + D ++ +R + Q F+ A N
Sbjct: 367 SGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNI 426
Query: 433 RLTPREHLEFYSRVRNVP-----SVLLNTIVNESLNKFALGHYS---DREVRTLSGGNKR 484
Y R L + ++K LG + + V LSGG ++
Sbjct: 427 A---------YGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVL-LSGGQRQ 476
Query: 485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
+L+ A ALL + P++ LDE TS +D + R + +ER + +GR ++ +H
Sbjct: 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALER-LMQGRTTLVIAH 526
Score = 44.7 bits (106), Expect = 1e-04
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
LSGG +++L+ A ALL + P++ LDE TS +D + R + +ER + +GR ++ +H
Sbjct: 470 LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALER-LMQGRTTLVIAH 526
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 66.0 bits (161), Expect = 4e-12
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 5/173 (2%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
+L L K Y ++ +SF +G GE ++G +G+GK+T +L G PTSG
Sbjct: 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64
Query: 402 NAYVMNHSI-----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT 456
+ + +L +G+ QF L T E++ + +N+
Sbjct: 65 DVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS 124
Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
E L L H ++ LSGG +++++ A AL+ NP L+ DEPT +D
Sbjct: 125 RALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177
Score = 38.6 bits (90), Expect = 0.004
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
E L L H ++ LSGG +++++ A AL+ NP L+ DEPT +D
Sbjct: 128 EMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 65.8 bits (160), Expect = 5e-12
Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 29/250 (11%)
Query: 333 VEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 392
+E G + DV + RL+ +Y N K + I+ + FG++G +G+GK+T K+L
Sbjct: 1 MEAGKSAEDVFNISRLY-LYINDKAI---LKDITIKIPNNSIFGIMGPSGSGKSTLLKVL 56
Query: 393 TGAIKPTSGNAYVMNHSIRDSMDLVR-SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPS 451
I+ V + D+ + I + + + P HL Y N+
Sbjct: 57 NRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYD---NIAY 113
Query: 452 VL----------LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPP 497
L + IV E L K L DR LSGG +++L+ A AL P
Sbjct: 114 PLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPK 173
Query: 498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 554
++ +DEPTS +D + IE+ ++E + +++ SHN ++ + + + NG+
Sbjct: 174 VLLMDEPTSMIDIVNSQ----AIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGE 229
Query: 555 FTCLGSATHL 564
GS+ +
Sbjct: 230 LVEWGSSNEI 239
Score = 48.5 bits (115), Expect = 3e-06
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 67 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
+ IV E L K L DR LSGG +++L+ A AL P ++ +DEPTS +D
Sbjct: 126 IKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185
Query: 123 PGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
+ IE+ ++E + +++ SHN ++ + + + NG+ GS+ +
Sbjct: 186 IVNSQ----AIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 65.2 bits (159), Expect = 5e-12
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 22/191 (11%)
Query: 364 QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRDSMDLVRSY 420
++F + +GE L+G +G GK+T + GA+ +G ++ + D + +
Sbjct: 20 NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL-DMLPAAQRQ 78
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI--------VNESLNKFALGHYSD 472
IG Q L L+ ++L F L T+ N +L + L
Sbjct: 79 IGILFQDALLFPHLSVGQNLLF---------ALPATLKGNARRNAANAALERSGLDGAFH 129
Query: 473 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVI 531
++ TLSGG + +++ ALL P + LDEP S +D R +F + G +
Sbjct: 130 QDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTV 189
Query: 532 LTSHNMEECEA 542
+H++++ A
Sbjct: 190 QVTHDLQDVPA 200
Score = 49.4 bits (118), Expect = 9e-07
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFL 129
N +L + L ++ TLSGG + +++ ALL P + LDEP S +D R +F
Sbjct: 115 ANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFR 174
Query: 130 WTCIERAVSEGRCVILTSHNMEECEA 155
+ G + +H++++ A
Sbjct: 175 QWVFSEVRAAGIPTVQVTHDLQDVPA 200
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 68.1 bits (167), Expect = 5e-12
Identities = 63/236 (26%), Positives = 94/236 (39%), Gaps = 43/236 (18%)
Query: 323 EDDVRKERERVEHGADSGDV--LVVKR--LFKIYANSKGTKPAVNQISFGVGRGECFGLL 378
ED V R+ D G V V F Y NS+ V +SF G+ ++
Sbjct: 313 EDAVPDVRDP-PGAIDLGRVKGAVEFDDVSFS-YDNSR---QGVEDVSFEAKPGQTVAIV 367
Query: 379 GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQFDAL------- 430
G GAGK+T +L P SG + IR + +R I Q DA
Sbjct: 368 GPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQ-DAGLFNRSIE 426
Query: 431 -NDRL-----TPREHLEFYSRVRNVPSVL-----LNTIVNESLNKFALGHYSDREVRTLS 479
N R+ T E R + + +T+V E G R LS
Sbjct: 427 DNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGER------G-------RQLS 473
Query: 480 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
GG +++L+ A ALL +PP++ LDE TS +D + ++ + +GR + +H
Sbjct: 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD-ELMKGRTTFIIAH 528
Score = 46.5 bits (111), Expect = 3e-05
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
R LSGG +++L+ A ALL +PP++ LDE TS +D + ++ + +GR + +H
Sbjct: 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD-ELMKGRTTFIIAH 528
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 68.6 bits (168), Expect = 6e-12
Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 18/194 (9%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML-----TGAIKPTSGNAYVMNHS 409
K + +N + V G L+G +GAGKTT +L TG I T G+ V
Sbjct: 772 KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVI--TGGDRLVNGRP 829
Query: 410 IRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL---NTIVNESLNKFA 466
+ S RS IGY Q D T RE L F + +R SV V E +
Sbjct: 830 LDSSFQ--RS-IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLE 886
Query: 467 LGHYSDREVRT----LSGGNKRKLSTAIALLGNPP-LIFLDEPTSGMDPGARRFLWTCIE 521
+ Y+D V L+ +++L+ + L+ P L+FLDEPTSG+D + +
Sbjct: 887 MESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMR 946
Query: 522 RAVSEGRCVILTSH 535
+ G+ ++ T H
Sbjct: 947 KLADHGQAILCTIH 960
Score = 53.6 bits (129), Expect = 2e-07
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL---NTIVNESLNKFALGHYSDREVRT 90
IGY Q D T RE L F + +R SV V E + + Y+D V
Sbjct: 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV 897
Query: 91 ----LSGGNKRKLSTAIALLGNPP-LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
L+ +++L+ + L+ P L+FLDEPTSG+D + + + G+ ++
Sbjct: 898 PGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILC 957
Query: 146 TSH 148
T H
Sbjct: 958 TIH 960
Score = 48.2 bits (115), Expect = 1e-05
Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 17/155 (10%)
Query: 372 GECFGLLGLNGAGKTTTFKMLTGAI----KPTSGNAYVMNHSIRDSMDLVRSYIGYCPQF 427
GE +LG G+G +T K + G + + R + Y +
Sbjct: 87 GELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAET 146
Query: 428 DALNDRLTPREHLEFYSRVRNVPS--------VLLNTIVNESLNKFALGHYSDREV---- 475
D LT E L+F +R + + I + + + L H + +V
Sbjct: 147 DVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDF 206
Query: 476 -RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
R +SGG ++++S A A LG + D T G+D
Sbjct: 207 VRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241
Score = 38.2 bits (89), Expect = 0.012
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 36 YCPQFDALNDRLTPREHLEFYSRVRNVPS--------VLLNTIVNESLNKFALGHYSDRE 87
Y + D LT E L+F +R + + I + + + L H + +
Sbjct: 142 YNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTK 201
Query: 88 V-----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
V R +SGG ++++S A A LG + D T G+D
Sbjct: 202 VGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 65.9 bits (161), Expect = 6e-12
Identities = 61/220 (27%), Positives = 99/220 (45%), Gaps = 10/220 (4%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI---- 410
++G + + IS V RG+ ++G +G GKTT +++ G I P G +I
Sbjct: 16 TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMS 75
Query: 411 RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVR-NVPSVLLNTIVNESLNKFALGH 469
R + VR + Q AL + +++ + R +P+ LL++ V L L
Sbjct: 76 RSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG 135
Query: 470 YSDREVRTLSGGNKRK--LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI-ERAVSE 526
+ LSGG R+ L+ AIAL P LI DEP G DP L I E +
Sbjct: 136 AAKLMPSELSGGMARRAALARAIAL--EPDLIMFDEPFVGQDPITMGVLVKLISELNSAL 193
Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
G ++ SH++ E ++ I+ + + GSA L++
Sbjct: 194 GVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
Score = 41.3 bits (97), Expect = 7e-04
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Query: 50 REHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK--LSTAIALLG 107
REH +P+ LL++ V L L + LSGG R+ L+ AIAL
Sbjct: 110 REH-------TQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIAL-- 160
Query: 108 NPPLIFLDEPTSGMDPGARRFLWTCI-ERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 166
P LI DEP G DP L I E + G ++ SH++ E ++ I+ +
Sbjct: 161 EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADK 220
Query: 167 QFTCLGSATHLKSKS 181
+ GSA L++
Sbjct: 221 KIVAHGSAQALQANP 235
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 67.6 bits (165), Expect = 7e-12
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 11/173 (6%)
Query: 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALN 431
GE +LG +G+GK+T L G I+ + ++ ++ + + +++ G+ Q D L
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKR-TGFVTQDDILY 152
Query: 432 DRLTPREHLEFYSRVRNVPSVL---LNTIVNES------LNKFALGHYSDREVRTLSGGN 482
LT RE L F S +R +P L +V ES L K + +R +SGG
Sbjct: 153 PHLTVRETLVFCSLLR-LPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGE 211
Query: 483 KRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
++++S A +L NP L+ LDEPTSG+D A L + +G+ ++ + H
Sbjct: 212 RKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMH 264
Score = 54.9 bits (132), Expect = 9e-08
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 31 LSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL---LNTIVNES------LNKFALG 81
L G+ Q D L LT RE L F S +R +P L +V ES L K
Sbjct: 139 LKRTGFVTQDDILYPHLTVRETLVFCSLLR-LPKSLTKQEKILVAESVISELGLTKCENT 197
Query: 82 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 141
+ +R +SGG ++++S A +L NP L+ LDEPTSG+D A L + +G+
Sbjct: 198 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGK 257
Query: 142 CVILTSH 148
++ + H
Sbjct: 258 TIVTSMH 264
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 67.4 bits (165), Expect = 8e-12
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 38/221 (17%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG-----NAYVMNHS---- 409
+P++ +SF + +GE G+ GL GA +T + L G + ++G + NH+
Sbjct: 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEA 320
Query: 410 IRDSMDLV---RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV-----LLNTI---- 457
I LV R G D + F S + N+ + LL+
Sbjct: 321 INHGFALVTEERRSTGIYAYLD-----------IGFNSLISNIRNYKNKVGLLDNSRMKS 369
Query: 458 ----VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
V +S+ GH + ++ +LSGGN++K+ LL P ++ LDEPT G+D GA+
Sbjct: 370 DTQWVIDSMRVKTPGHRT--QIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAK 427
Query: 514 RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
++ I + + +I+ S M E + ++ +M NG
Sbjct: 428 FEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGL 468
Score = 55.1 bits (133), Expect = 5e-08
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 149
+LSGGN++K+ LL P ++ LDEPT G+D GA+ ++ I + + +I+ S
Sbjct: 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSE 450
Query: 150 MEECEALCTKLTIMVNGQ 167
M E + ++ +M NG
Sbjct: 451 MPELLGITDRILVMSNGL 468
Score = 47.4 bits (113), Expect = 2e-05
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 87 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 146
+V TLS + + A A N ++ +DEPTS + L+T I + G ++
Sbjct: 131 KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYI 190
Query: 147 SHNMEECEALCTKLTIMVNGQF 168
SH MEE LC ++TI+ +GQ+
Sbjct: 191 SHKMEEIFQLCDEITILRDGQW 212
Score = 47.4 bits (113), Expect = 2e-05
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533
+V TLS + + A A N ++ +DEPTS + L+T I + G ++
Sbjct: 131 KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYI 190
Query: 534 SHNMEECEALCTKLTIMVNGQF 555
SH MEE LC ++TI+ +GQ+
Sbjct: 191 SHKMEEIFQLCDEITILRDGQW 212
Score = 30.5 bits (69), Expect = 2.8
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
G K A++ ++ V L+G NGAGK+T K L G + SG+
Sbjct: 10 GVK-ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGS 54
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 65.2 bits (159), Expect = 8e-12
Identities = 67/246 (27%), Positives = 104/246 (42%), Gaps = 55/246 (22%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
+L V L K+Y KG + +SF + GE G++G +G+GKTT K ++G + P +G
Sbjct: 6 LLSVSGLSKLYGPGKGCR----DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
Query: 402 NA------------YVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV 449
Y M+ + R L+R+ G+ Q PR+ L
Sbjct: 62 TVTYRMRDGQPRDLYTMSEAERRR--LLRTEWGFVHQ--------NPRDGLR-------- 103
Query: 450 PSVLLNTIVNESLNKFALGHYSD---------REV-----------RTLSGGNKRKLSTA 489
V + E L HY + EV RT SGG +++L A
Sbjct: 104 MQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIA 163
Query: 490 IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLT 548
L+ P L+F+DEPT G+D + L + V E G V++ +H++ L +L
Sbjct: 164 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLM 223
Query: 549 IMVNGQ 554
+M GQ
Sbjct: 224 VMKQGQ 229
Score = 49.0 bits (117), Expect = 2e-06
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 143
D RT SGG +++L A L+ P L+F+DEPT G+D + L + V E G V
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205
Query: 144 ILTSHNMEECEALCTKLTIMVNGQ 167
++ +H++ L +L +M GQ
Sbjct: 206 VIVTHDLAVARLLADRLMVMKQGQ 229
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 64.3 bits (157), Expect = 1e-11
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 14/203 (6%)
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV--MNHSIRDSMDLVRSYIGYCPQ 426
V GE +LG +GAGK+T ++ G P SG + ++H+ + S + Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF---Q 78
Query: 427 FDALNDRLTPREHLEFYSRVRNVPSVLLN----TIVNESLNKFALGHYSDREVRTLSGGN 482
+ L LT +++ P + LN V + + L + R LSGG
Sbjct: 79 ENNLFAHLTVAQNIGLGLS----PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQ 134
Query: 483 KRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECE 541
+++++ A L+ P++ LDEP S +DP R + + + E +++ +H+ E+
Sbjct: 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAA 194
Query: 542 ALCTKLTIMVNGQFTCLGSATHL 564
+ ++ + NG+ GS L
Sbjct: 195 RIADRVVFLDNGRIAAQGSTQEL 217
Score = 54.7 bits (132), Expect = 2e-08
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 63 PSVLLN----TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 118
P + LN V + + L + R LSGG +++++ A L+ P++ LDEP
Sbjct: 98 PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPF 157
Query: 119 SGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
S +DP R + + + E +++ +H+ E+ + ++ + NG+ GS L
Sbjct: 158 SALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQEL 217
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 64.3 bits (157), Expect = 1e-11
Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 21/209 (10%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP----TSGNAYVMNHSIRDSMDL 416
V ++ + RGE L+G +G+GK+ T + G + P TSG + D L
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILL------DGRPL 54
Query: 417 ----VRS-YIGYCPQ--FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH 469
+R +I Q A N T H R S ++ E+L L
Sbjct: 55 LPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD 114
Query: 470 YS---DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVS 525
+ LSGG +++ A+ALL PP + DEPT+ +D + R L E
Sbjct: 115 PEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL 174
Query: 526 EGRCVILTSHNMEECEALCTKLTIMVNGQ 554
G ++L +H++ + ++ +M +G+
Sbjct: 175 FGTGILLITHDLGVVARIADEVAVMDDGR 203
Score = 43.9 bits (104), Expect = 7e-05
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVILTSHN 149
LSGG +++ A+ALL PP + DEPT+ +D + R L E G ++L +H+
Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185
Query: 150 MEECEALCTKLTIMVNGQ 167
+ + ++ +M +G+
Sbjct: 186 LGVVARIADEVAVMDDGR 203
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 63.4 bits (155), Expect = 1e-11
Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 26/157 (16%)
Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT---SGNAYVMNHSIRD 412
+ P + S V GE +LG G+G +T K L + G+ + ++
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE 76
Query: 413 SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 472
+ I Y + D LT RE L+F R + +
Sbjct: 77 FAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG-----------------------N 113
Query: 473 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
VR +SGG ++++S A AL+ ++ D T G+D
Sbjct: 114 EFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
Score = 47.3 bits (113), Expect = 5e-06
Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 38/126 (30%)
Query: 12 TLLLTTQKVPGSNPTIDKNLSYIG---------------YCPQFDALNDRLTPREHLEFY 56
TLL N +++ ++ Y G Y + D LT RE L+F
Sbjct: 48 TLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFA 107
Query: 57 SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDE 116
R + + VR +SGG ++++S A AL+ ++ D
Sbjct: 108 LRCKG-----------------------NEFVRGISGGERKRVSIAEALVSRASVLCWDN 144
Query: 117 PTSGMD 122
T G+D
Sbjct: 145 STRGLD 150
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 63.6 bits (156), Expect = 1e-11
Identities = 50/216 (23%), Positives = 88/216 (40%), Gaps = 39/216 (18%)
Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 413
+ T + I+ V +GE ++G G+GK++ L G ++ SG+ V
Sbjct: 13 GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS----- 67
Query: 414 MDLVRSYIGYCPQFD-ALNDRLTPREHL--------EFYSRVRNVPSVLLNTIVNESLNK 464
I Y Q N T RE++ E Y +V + + L L
Sbjct: 68 -------IAYVSQEPWIQNG--TIRENILFGKPFDEERYEKV--IKACALE----PDLEI 112
Query: 465 FALGHYSDR-EV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT- 518
G D E+ LSGG K+++S A A+ + + LD+P S +D R ++
Sbjct: 113 LPDG---DLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEN 169
Query: 519 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
CI + + IL +H ++ ++ ++ NG+
Sbjct: 170 CILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204
Score = 49.8 bits (120), Expect = 6e-07
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSH 148
LSGG K+++S A A+ + + LD+P S +D R ++ CI + + IL +H
Sbjct: 127 NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTH 186
Query: 149 NMEECEALCTKLTIMVNGQ 167
++ ++ ++ NG+
Sbjct: 187 QLQLLPH-ADQIVVLDNGR 204
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 66.8 bits (163), Expect = 2e-11
Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 18/172 (10%)
Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS-----MDLVRSYIGYCPQFDALN 431
L+G++GAGKTT +L G + T G Y+ IR S + GYC Q D +
Sbjct: 911 LMGVSGAGKTTLMDVLAG--RKTGG--YI-EGDIRISGFPKKQETFARISGYCEQNDIHS 965
Query: 432 DRLTPREHLEFYSRVR---NVPSVLLNTIVNESLNKFALGHYSDREV-----RTLSGGNK 483
++T RE L + + +R V V+E + L + D V LS +
Sbjct: 966 PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025
Query: 484 RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
++L+ A+ L+ NP +IF+DEPTSG+D A + + V GR V+ T H
Sbjct: 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077
Score = 57.2 bits (138), Expect = 2e-08
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 35 GYCPQFDALNDRLTPREHLEFYSRVR---NVPSVLLNTIVNESLNKFALGHYSDREV--- 88
GYC Q D + ++T RE L + + +R V V+E + L + D V
Sbjct: 956 GYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLP 1015
Query: 89 --RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 146
LS +++L+ A+ L+ NP +IF+DEPTSG+D A + + V GR V+ T
Sbjct: 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1075
Query: 147 SH 148
H
Sbjct: 1076 IH 1077
Score = 34.8 bits (80), Expect = 0.16
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
D +R +SGG K++++T ++G +F+DE ++G+D + C+++ V +
Sbjct: 331 DEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATV 390
Query: 145 LTS 147
L S
Sbjct: 391 LMS 393
Score = 34.8 bits (80), Expect = 0.16
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 531
D +R +SGG K++++T ++G +F+DE ++G+D + C+++ V +
Sbjct: 331 DEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATV 390
Query: 532 LTS 534
L S
Sbjct: 391 LMS 393
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 64.0 bits (156), Expect = 2e-11
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 4/212 (1%)
Query: 349 FKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408
FK + G ++ I + +GE ++G +G+GK+T + + + TSG+ V
Sbjct: 4 FKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGL 63
Query: 409 SIRD---SMDLVRSYIGYCPQFDALNDRLTPREHLEFYS-RVRNVPSVLLNTIVNESLNK 464
+ D L+R G Q L LT E++ F RVR E L K
Sbjct: 64 KVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAK 123
Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
L + LSGG +++++ A AL P L+ DEPTS +DP R + ++
Sbjct: 124 VGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLA 183
Query: 525 SEGRCVILTSHNMEECEALCTKLTIMVNGQFT 556
EG +++ +H + E + ++L + G+
Sbjct: 184 EEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA 215
Score = 50.9 bits (122), Expect = 5e-07
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 8/133 (6%)
Query: 38 PQFDAL-NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK 96
P AL N P RVR E L K L + LSGG +
Sbjct: 90 PHLTALENVMFGPL-------RVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQ 142
Query: 97 RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL 156
++++ A AL P L+ DEPTS +DP R + ++ EG +++ +H + E +
Sbjct: 143 QRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKV 202
Query: 157 CTKLTIMVNGQFT 169
++L + G+
Sbjct: 203 ASRLIFIDKGRIA 215
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 65.9 bits (161), Expect = 2e-11
Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 59/232 (25%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVR 418
PA++ ++ V GE L+G +GAGK+T F++L P SG I D +DL
Sbjct: 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSG-------RILLDGVDLR- 405
Query: 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVP--SVLLNTIVNESLNKFALGHYSDREVR 476
Q D P E +R+ VP VL V E++ ++ +D EV
Sbjct: 406 -------QLD-------PAE---LRARMALVPQDPVLFAASVMENI-RYGRPDATDEEVE 447
Query: 477 ----------------------------TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 508
TLSGG +++++ A A+L + P++ LDE TS +
Sbjct: 448 AAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSAL 507
Query: 509 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
D + + + +E +GR ++ +H + ++ +M G+ G+
Sbjct: 508 DAESEQLVQQALETL-MKGRTTLIIAHRLATVLK-ADRIVVMDQGRIVAQGT 557
Score = 45.1 bits (107), Expect = 8e-05
Identities = 22/84 (26%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 149
TLSGG +++++ A A+L + P++ LDE TS +D + + + +E +GR ++ +H
Sbjct: 476 TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL-MKGRTTLIIAHR 534
Query: 150 MEECEALCTKLTIMVNGQFTCLGS 173
+ ++ +M G+ G+
Sbjct: 535 LATVLK-ADRIVVMDQGRIVAQGT 557
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 63.8 bits (155), Expect = 3e-11
Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 28/216 (12%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L V L K Y G + +S G+ ++G +G+GK+T + + KP+ G+
Sbjct: 6 LNVIDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGS 61
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDA-----LNDRLTPR-EHLEFYS------RVRNVP 450
V +I LVR G D L RLT +H +S V P
Sbjct: 62 IVVNGQTIN----LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP 117
Query: 451 SVLLNTIVNES-------LNKFAL-GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD 502
+L E+ L K + + LSGG ++++S A AL P ++ D
Sbjct: 118 IQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFD 177
Query: 503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
EPTS +DP + +++ EG+ +++ +H M
Sbjct: 178 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 213
Score = 47.7 bits (113), Expect = 6e-06
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG ++++S A AL P ++ DEPTS +DP + +++ EG+ +++ +H M
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212
Query: 151 E 151
Sbjct: 213 G 213
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 64.7 bits (158), Expect = 3e-11
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 8/214 (3%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L + + K + G A+ IS V +GE LLG +G GKTT +++ G + T+G
Sbjct: 5 LSIDNIRKRF----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGT 60
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
Y I R Y G Q AL LT +++ + + R + + V E L
Sbjct: 61 IYQGGRDITRLPPQKRDY-GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELL 119
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
+ L + LSGG +++++ A AL +P L+ LDEP S +D R L T I R
Sbjct: 120 DLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI-R 178
Query: 523 AVSE--GRCVILTSHNMEECEALCTKLTIMVNGQ 554
+ G I+ +H+ EE ++ ++ +M +G
Sbjct: 179 QLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGV 212
Score = 39.2 bits (92), Expect = 0.004
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVILTSH 148
LSGG +++++ A AL +P L+ LDEP S +D R L T I R + G I+ +H
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI-RQLQRRLGVTTIMVTH 193
Query: 149 NMEECEALCTKLTIMVNGQ 167
+ EE ++ ++ +M +G
Sbjct: 194 DQEEALSMADRIVVMNHGV 212
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 63.3 bits (154), Expect = 3e-11
Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 34/196 (17%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH--SIRDSMDLVR 418
++ IS + GE G++G +G+GK+T K++ P +G V H ++ D L R
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWL-R 75
Query: 419 SYIGYCPQFD-----------ALNDRLTPREHLEFYSRVRNVPSVLL------NTIVNES 461
+G Q + AL D E + +++ + +TIV E
Sbjct: 76 RQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGE- 134
Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
+ LSGG +++++ A AL+ NP ++ DE TS +D + + +
Sbjct: 135 -----------QGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM- 181
Query: 522 RAVSEGRCVILTSHNM 537
+ GR VI+ +H +
Sbjct: 182 HDICAGRTVIIIAHRL 197
Score = 42.9 bits (101), Expect = 2e-04
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++++ A AL+ NP ++ DE TS +D + + + + GR VI+ +H +
Sbjct: 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM-HDICAGRTVIIIAHRL 197
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 63.2 bits (153), Expect = 5e-11
Identities = 49/198 (24%), Positives = 100/198 (50%), Gaps = 8/198 (4%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
+N +SF + +GE ++G NG+GK+TT +++ G + G + + +++ +R
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 421 IGYCPQFDALNDRL---TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRT 477
IG F +++ T + + F + +P + V+E+L + + RE
Sbjct: 83 IGMV--FQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPAR 140
Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT-SHN 536
LSGG K++++ A + P +I LDE TS +DP R+ + I + + +L+ +H+
Sbjct: 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD 200
Query: 537 MEECEALCTKLTIMVNGQ 554
++E A ++ +M G+
Sbjct: 201 LDEA-ASSDRILVMKAGE 217
Score = 45.1 bits (106), Expect = 4e-05
Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Query: 48 TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG 107
T + + F + +P + V+E+L + + RE LSGG K++++ A +
Sbjct: 98 TVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL 157
Query: 108 NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT-SHNMEECEALCTKLTIMVNG 166
P +I LDE TS +DP R+ + I + + +L+ +H+++E A ++ +M G
Sbjct: 158 RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEA-ASSDRILVMKAG 216
Query: 167 QFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRAL 205
+ + + L + S + G D+ P S L + L
Sbjct: 217 EIIKEAAPSELFATSEDMVEIGLDV----PFSSNLMKDL 251
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 63.3 bits (154), Expect = 6e-11
Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 26/221 (11%)
Query: 352 YANSKGT---KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408
Y S GT K ++ ISF + G L+G G+GK+T + +KP+SG + +
Sbjct: 10 YIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGY 69
Query: 409 SI-----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES-- 461
I ++ +R + QF P L + +++V N +E
Sbjct: 70 HITPETGNKNLKKLRKKVSLVFQF--------PEAQLFENTVLKDVEFGPKNFGFSEDEA 121
Query: 462 -------LNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
L K L + LSGG R+++ A + P ++ LDEP +G+DP R
Sbjct: 122 KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGR 181
Query: 514 RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
+ + + G VIL +HNM++ + ++ +G+
Sbjct: 182 KEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGK 222
Score = 52.1 bits (125), Expect = 3e-07
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG R+++ A + P ++ LDEP +G+DP R+ + + G VIL +HNM
Sbjct: 146 LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM 205
Query: 151 EECEALCTKLTIMVNGQ 167
++ + ++ +G+
Sbjct: 206 DDVAEYADDVLVLEHGK 222
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 62.0 bits (151), Expect = 6e-11
Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 24/195 (12%)
Query: 357 GTKPAVNQISFGVGRGECFGLL-GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SM 414
G +N ISF + GE F L+ G +G GK+T K++ I PTSG I
Sbjct: 18 GDAKILNNISFSLRAGE-FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP 76
Query: 415 DLVRSYIGYCPQFDAL-NDRLTPREHLEFYSRVRNV---PSVLLNTIVNESLNKFALG-H 469
++ R + YC Q L D T ++L F ++RN P++ L + L +FAL
Sbjct: 77 EIYRQQVSYCAQTPTLFGD--TVYDNLIFPWQIRNQQPDPAIFL-----DDLERFALPDT 129
Query: 470 YSDREVRTLSGGNKRKLSTAIALLGN----PPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
+ + LSGG K++ I+L+ N P ++ LDE TS +D + + I R V
Sbjct: 130 ILTKNIAELSGGEKQR----ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVR 185
Query: 526 E-GRCVILTSHNMEE 539
E V+ +H+ +E
Sbjct: 186 EQNIAVLWVTHDKDE 200
Score = 35.8 bits (83), Expect = 0.039
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 21/129 (16%)
Query: 34 IGYCPQFDAL-NDRLTPREHLEFYSRVRNV---PSVLLNTIVNESLNKFALG-HYSDREV 88
+ YC Q L D T ++L F ++RN P++ L + L +FAL + +
Sbjct: 83 VSYCAQTPTLFGD--TVYDNLIFPWQIRNQQPDPAIFL-----DDLERFALPDTILTKNI 135
Query: 89 RTLSGGNKRKLSTAIALLGN----PPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCV 143
LSGG K++ I+L+ N P ++ LDE TS +D + + I R V E V
Sbjct: 136 AELSGGEKQR----ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAV 191
Query: 144 ILTSHNMEE 152
+ +H+ +E
Sbjct: 192 LWVTHDKDE 200
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 61.6 bits (150), Expect = 9e-11
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 5/196 (2%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
V+ ++ L Y + K + I+ + GE L G +G+GKTT ++ G G
Sbjct: 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEG 60
Query: 402 NAYVMNHSI----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV-RNVPSVLLNT 456
+ V+ + + +R IGY Q L LT R++++ + N+
Sbjct: 61 SLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE 120
Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
L LG + D LSGG K++++ A AL+ P L+ DEPT+ +D + R +
Sbjct: 121 RARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDV 180
Query: 517 WTCIERAVSEGRCVIL 532
+++ E C IL
Sbjct: 181 VELMQKLAREQGCTIL 196
Score = 45.4 bits (108), Expect = 3e-05
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 80 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 139
LG + D LSGG K++++ A AL+ P L+ DEPT+ +D + R + +++ E
Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 140 GRCVIL 145
C IL
Sbjct: 191 QGCTIL 196
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 61.7 bits (150), Expect = 1e-10
Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 14/205 (6%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ VK L K + G + ++ I V GE ++G +G+GKTT + + +P +G
Sbjct: 4 IEVKNLVKKF---HG-QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGT 59
Query: 403 AYVMNHSIRDSMDL---------VRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSV 452
V + +I + L +R ++G+ Q F+ R +E V+ P
Sbjct: 60 IRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKE 119
Query: 453 LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
E L K L R LSGG +++++ A AL P +I DEPTS +DP
Sbjct: 120 EATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPEL 179
Query: 513 RRFLWTCIERAVSEGRCVILTSHNM 537
+ I + E R +++ +H M
Sbjct: 180 VGEVLNTIRQLAQEKRTMVIVTHEM 204
Score = 47.8 bits (114), Expect = 5e-06
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 132
E L K L R LSGG +++++ A AL P +I DEPTS +DP +
Sbjct: 127 ELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT 186
Query: 133 IERAVSEGRCVILTSHNM 150
I + E R +++ +H M
Sbjct: 187 IRQLAQEKRTMVIVTHEM 204
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 64.0 bits (156), Expect = 1e-10
Identities = 47/201 (23%), Positives = 94/201 (46%), Gaps = 18/201 (8%)
Query: 319 VSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLL 378
V L + + +++R E +GD+++ + S ++ IS + ++
Sbjct: 451 VYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGS----NILSDISLTIKMNSKTTIV 506
Query: 379 GLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVRSYIGYCPQ----FDAL--- 430
G++G+GK+T K+L G + SG + S++D +R +I Y PQ F
Sbjct: 507 GMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILE 566
Query: 431 NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD--REVRTLSGGNKRKLST 488
N L +E++ + + + + + LG+ ++ E ++SGG K++++
Sbjct: 567 NLLLGAKENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIAL 622
Query: 489 AIALLGNPPLIFLDEPTSGMD 509
A ALL + ++ LDE TS +D
Sbjct: 623 ARALLTDSKVLILDESTSNLD 643
Score = 38.6 bits (90), Expect = 0.009
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 71 VNESLNKFALGHYSD--REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
+ + + LG+ ++ E ++SGG K++++ A ALL + ++ LDE TS +D
Sbjct: 590 IKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 61.8 bits (150), Expect = 1e-10
Identities = 58/202 (28%), Positives = 88/202 (43%), Gaps = 27/202 (13%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKM------LTGAIKPTSGNAYVMNHSI 410
G K A+ I+ + + L+G +G GK+T + L + T Y + +
Sbjct: 17 GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIM 76
Query: 411 RDSMDLV--RSYIGYC-------PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
D+V R IG P+ N PR H E + L+TIV +S
Sbjct: 77 DSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKT-------LDTIVEKS 129
Query: 462 LNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
L AL DR +LSGG +++L A L NP +I +DEP S +DP A +
Sbjct: 130 LKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIE 189
Query: 518 TCIERAVSEGRCVILTSHNMEE 539
IE + + VI+ +HNM++
Sbjct: 190 DLIED-LKKEYTVIIVTHNMQQ 210
Score = 55.6 bits (134), Expect = 1e-08
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 67 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
L+TIV +SL AL DR +LSGG +++L A L NP +I +DEP S +D
Sbjct: 122 LDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181
Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEE 152
P A + IE + + VI+ +HNM++
Sbjct: 182 PIATAKIEDLIED-LKKEYTVIIVTHNMQQ 210
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 61.1 bits (148), Expect = 2e-10
Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 31/204 (15%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML------TGAIKPTSGNAYVMNHSI 410
G A+ I+ + E ++G +G GK+T K L +K T Y ++ +
Sbjct: 23 GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82
Query: 411 RDSMDLV--RSYIGYC-------PQ--FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
+ +DLV R IG PQ FD N PR H +N L IV
Sbjct: 83 KGKVDLVELRKNIGMVFQKGNPFPQSIFD--NVAYGPRIH-----GTKNKKK--LQEIVE 133
Query: 460 ESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
+SL AL DR + +LSGG +++L A AL NP ++ +DEPTS +DP + R
Sbjct: 134 KSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRK 193
Query: 516 LWTCIERAVSEGRCVILTSHNMEE 539
+ I + + E +++ +HNM++
Sbjct: 194 IEELILK-LKEKYTIVIVTHNMQQ 216
Score = 51.4 bits (123), Expect = 3e-07
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 67 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
L IV +SL AL DR + +LSGG +++L A AL NP ++ +DEPTS +D
Sbjct: 128 LQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEE 152
P + R + I + + E +++ +HNM++
Sbjct: 188 PVSTRKIEELILK-LKEKYTIVIVTHNMQQ 216
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 60.8 bits (148), Expect = 3e-10
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 24/182 (13%)
Query: 372 GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD-LVRSYIGYCPQ--FD 428
G+ GL+G NG GK+T K+L G +KP G D ++ + G Q F
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGK-----FDDPPDWDEILDEFRGSELQNYFT 80
Query: 429 AL-NDRLTPREHLEFYSRVRNVPSV-------LLNTI-----VNESLNKFALGHYSDREV 475
L + ++ V +P LL ++E +++ L H DR +
Sbjct: 81 KLLEGDVKVIVKPQY---VDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNI 137
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
LSGG ++++ A AL + F DEP+S +D R I + V++ H
Sbjct: 138 DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEH 197
Query: 536 NM 537
++
Sbjct: 198 DL 199
Score = 46.6 bits (111), Expect = 1e-05
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
+E +++ L H DR + LSGG ++++ A AL + F DEP+S +D R
Sbjct: 121 DELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAAR 180
Query: 132 CIERAVSEGRCVILTSHNM 150
I + V++ H++
Sbjct: 181 LIRELAEDDNYVLVVEHDL 199
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 62.4 bits (152), Expect = 3e-10
Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 24/191 (12%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
+P +N ISF + G+ ++G +GAGK+T ++L SG+ + IRD + +
Sbjct: 276 RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSL 335
Query: 418 RSYIGYCPQFDAL-NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY------ 470
R IG PQ L ND + Y+ P V + + +
Sbjct: 336 RRAIGIVPQDTVLFNDTI-------AYNIKYGRP-DATAEEVGAAAEAAQIHDFIQSLPE 387
Query: 471 ------SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
+R ++ LSGG K++++ A +L NPP++ LDE TS +D + + + V
Sbjct: 388 GYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE-V 445
Query: 525 SEGRCVILTSH 535
S GR ++ +H
Sbjct: 446 SAGRTTLVIAH 456
Score = 43.9 bits (104), Expect = 2e-04
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
LSGG K++++ A +L NPP++ LDE TS +D + + + VS GR ++ +H
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE-VSAGRTTLVIAH 456
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 59.4 bits (144), Expect = 5e-10
Identities = 42/191 (21%), Positives = 86/191 (45%), Gaps = 10/191 (5%)
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD 428
+GE ++G +G+GK+T ++ G P SG ++N + + Q +
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV-LINGVDVTAAPPADRPVSMLFQEN 79
Query: 429 ALNDRLTPREHLEFYSRVRNVPSVLLNTI----VNESLNKFALGHYSDREVRTLSGGNKR 484
L LT +++ + P + L + +L + L R LSGG ++
Sbjct: 80 NLFAHLTVEQNVG----LGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQ 135
Query: 485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEAL 543
+++ A L+ + P++ LDEP + +DP R + + +E V++ +H E+ + L
Sbjct: 136 RVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRL 195
Query: 544 CTKLTIMVNGQ 554
++ + NG+
Sbjct: 196 AQRVVFLDNGR 206
Score = 52.1 bits (125), Expect = 1e-07
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 62 VPSVLLNTI----VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 117
P + L + +L + L R LSGG +++++ A L+ + P++ LDEP
Sbjct: 96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEP 155
Query: 118 TSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 167
+ +DP R + + +E V++ +H E+ + L ++ + NG+
Sbjct: 156 FAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGR 206
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 60.2 bits (146), Expect = 5e-10
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 7/159 (4%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS- 419
AV +SF + G+ ++G NG+GK+T KML G I+PTSG + +H + RS
Sbjct: 28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSK 87
Query: 420 ---YIGYCPQFDALNDRLTPREHLEF-YSRVRNVPSVLLNTIVNESLNKFAL-GHYSDRE 474
I P +LN RL + L+F ++ + E+L L +++
Sbjct: 88 RIRMIFQDPN-TSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY 146
Query: 475 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
L+ G K++++ A AL+ P +I DE + +D R
Sbjct: 147 PHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMR 185
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 61.5 bits (150), Expect = 6e-10
Identities = 60/216 (27%), Positives = 92/216 (42%), Gaps = 56/216 (25%)
Query: 340 GD-VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 398
GD V+ + L K + G K ++ +SF + G G++G NGAGK+T F+M+TG +P
Sbjct: 319 GDKVIEAENLSKGF----GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP 374
Query: 399 TSGNAYVMNHSIRDSMDLVRSYIGYCPQF-DALNDRLTPREHLEFYSRVRNVPSVLLNTI 457
SG I +++ L Y Q DAL+ T E
Sbjct: 375 DSGTI-----KIGETVKL-----AYVDQSRDALDPNKTVWEE------------------ 406
Query: 458 VNESLNKFALGHY---------------SDRE--VRTLSGGNKRKLSTAIALLGNPPLIF 500
++ L+ LG SD++ V LSGG + ++ A L ++
Sbjct: 407 ISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLL 466
Query: 501 LDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH 535
LDEPT+ +D R L E A+ E C ++ SH
Sbjct: 467 LDEPTNDLDVETLRAL----EEALLEFAGCAVVISH 498
Score = 58.0 bits (141), Expect = 8e-09
Identities = 61/235 (25%), Positives = 92/235 (39%), Gaps = 63/235 (26%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
+ + R+ K+ K + IS G G+LGLNGAGK+T +++ G K +G
Sbjct: 4 IYTMNRVSKVVP---PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNG 60
Query: 402 NAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
A I+ +GY PQ L+ T RE++E V + L NE
Sbjct: 61 EARPAP-GIK---------VGYLPQEPQLDPTKTVRENVE--EGVAEIKDAL--DRFNEI 106
Query: 462 LNKFAL-----------------------GHYSDRE----------------VRTLSGGN 482
KFA DR+ V LSGG
Sbjct: 107 SAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGE 166
Query: 483 KRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCVILTSH 535
+R+++ LL P ++ LDEPT+ +D A W +E+ + E G V+ +H
Sbjct: 167 RRRVALCRLLLSKPDMLLLDEPTNHLD--AESVAW--LEQHLQEYPG-TVVAVTH 216
Score = 41.1 bits (97), Expect = 0.001
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRC 142
D +V LSGG +R+++ LL P ++ LDEPT+ +D A W +E+ + E G
Sbjct: 156 DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLD--AESVAW--LEQHLQEYPG-T 210
Query: 143 VILTSH 148
V+ +H
Sbjct: 211 VVAVTH 216
Score = 31.4 bits (72), Expect = 1.3
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 88 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILT 146
V LSGG + ++ A L ++ LDEPT+ +D R L E A+ E C ++
Sbjct: 441 VGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRAL----EEALLEFAGCAVVI 496
Query: 147 SH 148
SH
Sbjct: 497 SH 498
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 59.5 bits (145), Expect = 7e-10
Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 40/207 (19%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS-----GNAYVMNHSIR 411
G K A+ I+ + + + L+G +G GK+T + L G + +I
Sbjct: 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIY 77
Query: 412 D-SMDLV--RSYIGYCPQFDALNDRLTP-----REHLEFYSRVRNVPSVLLNTIVNESLN 463
D +D+V R +G Q + P +++ + R+ + L+ IV SL
Sbjct: 78 DPKVDVVELRRRVGMVFQ------KPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLK 131
Query: 464 KFALGHYSDREV--------RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARR 514
K AL EV LSGG +++L A AL P ++ +DEPTS +DP +
Sbjct: 132 KAALWD----EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLK 187
Query: 515 FLWTCIERAVSEGR---CVILTSHNME 538
IE ++E + +++ +HNM+
Sbjct: 188 -----IEELITELKKKYTIVIVTHNMQ 209
Score = 46.8 bits (112), Expect = 1e-05
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 21/97 (21%)
Query: 67 LNTIVNESLNKFALGHYSDREV--------RTLSGGNKRKLSTAIALLGNPPLIFLDEPT 118
L+ IV SL K AL EV LSGG +++L A AL P ++ +DEPT
Sbjct: 122 LDEIVESSLKKAALWD----EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177
Query: 119 SGMDP-GARRFLWTCIERAVSEGR---CVILTSHNME 151
S +DP + IE ++E + +++ +HNM+
Sbjct: 178 SALDPISTLK-----IEELITELKKKYTIVIVTHNMQ 209
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 59.6 bits (144), Expect = 8e-10
Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 37/251 (14%)
Query: 326 VRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGK 385
VR++ E +L VK L Y G K AVN IS + + L+G +G GK
Sbjct: 5 VREKIEIAPFPEAKEHILEVKDLSIYY----GEKRAVNDISMDIEKHAVTALIGPSGCGK 60
Query: 386 TTTFKM---LTGAIKPTSGNAYVMNHSIR---DSMDLV--RSYIGYC-----PQFDALND 432
+T + + I ++ + ++++V R IG P ++ +
Sbjct: 61 STFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYN 120
Query: 433 RLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLST 488
+T H Y+ R +L+ IV ESL K AL DR +LSGG +++L
Sbjct: 121 NIT---HALKYAGERR--KSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCI 175
Query: 489 AIALLGNPPLIFLDEPTSGMDP--GARRFLWTCIERAVSEGR---CVILTSHNMEECEAL 543
A L P ++ LDEP S +DP A+ IE ++E + +I+ +HNM++ +
Sbjct: 176 ARTLAMKPAVLLLDEPASALDPISNAK------IEELITELKEEYSIIIVTHNMQQALRV 229
Query: 544 CTKLTIMVNGQ 554
+ +NG
Sbjct: 230 SDRTAFFLNGD 240
Score = 50.7 bits (121), Expect = 6e-07
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 15/111 (13%)
Query: 66 LLNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 121
+L+ IV ESL K AL DR +LSGG +++L A L P ++ LDEP S +
Sbjct: 136 VLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASAL 195
Query: 122 DP--GARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 167
DP A+ IE ++E + +I+ +HNM++ + + +NG
Sbjct: 196 DPISNAK------IEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGD 240
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 59.6 bits (145), Expect = 9e-10
Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 26/205 (12%)
Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI---RDSMDL--VRSYIGYCPQFDALN 431
++G G+GK+T + L G ++PTSG + I + + L +R +G QF
Sbjct: 38 IIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQF---- 93
Query: 432 DRLTPREHLEFYSRVRN----------VPSVLLNTIVNESLNKFALGH-YSDREVRTLSG 480
P EH F V V E + L R LSG
Sbjct: 94 ----P-EHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSG 148
Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 539
G R+++ A L P ++ LDEPT+G+DP R+ + + E G +L +H+ME+
Sbjct: 149 GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED 208
Query: 540 CEALCTKLTIMVNGQFTCLGSATHL 564
++ +M G G+ +
Sbjct: 209 AARYADQIVVMHKGTVFLQGTPREI 233
Score = 53.9 bits (130), Expect = 6e-08
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149
LSGG R+++ A L P ++ LDEPT+G+DP R+ + + E G +L +H+
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205
Query: 150 MEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALPVSGNDLGRGDPVRSELSRAL 205
ME+ ++ +M G G+ + + L G DL P + RAL
Sbjct: 206 MEDAARYADQIVVMHKGTVFLQGTPREIFADPDELEAIGLDL----PETVKFKRAL 257
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 59.1 bits (144), Expect = 9e-10
Identities = 53/233 (22%), Positives = 88/233 (37%), Gaps = 50/233 (21%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRDS- 413
G K + ++ V GE ++G NG+GK+T + G + T G I +
Sbjct: 15 GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74
Query: 414 ------------------------MDLVRSYIGYCPQFDALNDRLTPREHL-EFYSRVRN 448
D +R+ A+N R R L EF ++
Sbjct: 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRA---------AMNARRGARGILPEFIKELKE 125
Query: 449 VPSVLLNTIVNESLNKFALGHYSDREV-RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 507
+L L++ + +R V SGG K++ LL P L LDEP SG
Sbjct: 126 KAELL-------GLDEE----FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSG 174
Query: 508 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEAL-CTKLTIMVNGQFTCLG 559
+D A + + I EGR V++ +H + + K+ ++ +G+ G
Sbjct: 175 LDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
Score = 45.3 bits (108), Expect = 3e-05
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 83 YSDREV-RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 141
+ +R V SGG K++ LL P L LDEP SG+D A + + I EGR
Sbjct: 136 FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGR 195
Query: 142 CVILTSHNMEECEAL-CTKLTIMVNGQFTCLG 172
V++ +H + + K+ ++ +G+ G
Sbjct: 196 GVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 59.7 bits (145), Expect = 1e-09
Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 18/202 (8%)
Query: 363 NQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY-- 420
N IS + G+ LLG +G+GKTT +++ G TSG ++ H D+ R +
Sbjct: 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG--HIRFHG----TDVSRLHAR 72
Query: 421 ---IGYCPQFDALNDRLTPREHLEFYSRV---RNVPSV-LLNTIVNESLNKFALGHYSDR 473
+G+ Q AL +T +++ F V R P+ + V + L L H +DR
Sbjct: 73 DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR 132
Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR--CVI 531
LSGG K++++ A AL P ++ LDEP +D R+ L + + E + V
Sbjct: 133 YPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF 192
Query: 532 LTSHNMEECEALCTKLTIMVNG 553
+T H+ EE + ++ +M G
Sbjct: 193 VT-HDQEEAMEVADRVVVMSQG 213
Score = 42.0 bits (99), Expect = 6e-04
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 7/139 (5%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRV---RNVPSV-LLNTIVNESLNKFALGHYSDREVR 89
+G+ Q AL +T +++ F V R P+ + V + L L H +DR
Sbjct: 76 VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA 135
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR--CVILTS 147
LSGG K++++ A AL P ++ LDEP +D R+ L + + E + V +T
Sbjct: 136 QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVT- 194
Query: 148 HNMEECEALCTKLTIMVNG 166
H+ EE + ++ +M G
Sbjct: 195 HDQEEAMEVADRVVVMSQG 213
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 57.8 bits (140), Expect = 1e-09
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 38/162 (23%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL--V 417
P + +SF V GE G++G GAGK+T L ++ G + I ++ L +
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDIS-TIPLEDL 80
Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRT 477
RS + PQ D P++ TI + +L+ F YSD E+
Sbjct: 81 RSSLTIIPQ-D---------------------PTLFSGTIRS-NLDPF--DEYSDEEIYG 115
Query: 478 ----------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
LS G ++ L A ALL P ++ LDE T+ +D
Sbjct: 116 ALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASID 157
Score = 38.2 bits (89), Expect = 0.006
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 13/70 (18%)
Query: 63 PSVLLNTIVNESLNKFALGHYSDREVRT----------LSGGNKRKLSTAIALLGNPPLI 112
P++ TI + +L+ F YSD E+ LS G ++ L A ALL P ++
Sbjct: 91 PTLFSGTIRS-NLDPF--DEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVL 147
Query: 113 FLDEPTSGMD 122
LDE T+ +D
Sbjct: 148 VLDEATASID 157
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 59.0 bits (143), Expect = 1e-09
Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 9/188 (4%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV-----MNHSIRDSM 414
A+ ++ + G +G G+GK+T ++L G PT G+ V + S +
Sbjct: 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80
Query: 415 DLVRSYIGYCPQF--DALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH-YS 471
+R +G QF L + T + + F + V + E L +
Sbjct: 81 KQIRKKVGLVFQFPESQLFEE-TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLF 139
Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 531
++ LSGG R+++ A L P ++ LDEPT+G+DP R+ L T ++ G ++
Sbjct: 140 EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIV 199
Query: 532 LTSHNMEE 539
L +H M++
Sbjct: 200 LVTHLMDD 207
Score = 50.9 bits (122), Expect = 6e-07
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG R+++ A L P ++ LDEPT+G+DP R+ L T ++ G ++L +H M
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM 205
Query: 151 EECEALCTKLTIMVNGQFTCLGSATH-------LKSKSMALP 185
++ + ++ G+ G L+ K + +P
Sbjct: 206 DDVANYADFVYVLEKGKLVLSGKPKDIFQDVDFLEEKQLGVP 247
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 59.8 bits (145), Expect = 2e-09
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 19/182 (10%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DSMDLVRSY 420
V I+ + RGE L+G NG+GK+T +LTG +P SG + + + ++ R
Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKL 398
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH---YSDREVRT 477
L D+L E S L + + L + L H +D
Sbjct: 399 FSAVFSDYHLFDQLLGPE---------GKASPQL---IEKWLQRLELAHKTSLNDGRFSN 446
Query: 478 --LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTS 534
LS G K++L+ +ALL ++ LDE + DP RR + + +G+ + S
Sbjct: 447 LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS 506
Query: 535 HN 536
H+
Sbjct: 507 HD 508
Score = 38.6 bits (90), Expect = 0.008
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSHN 149
LS G K++L+ +ALL ++ LDE + DP RR + + +G+ + SH+
Sbjct: 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHD 508
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 60.2 bits (146), Expect = 2e-09
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 82 HYSDREVRTLSGGNKRKLSTAIAL--------LGNPPLIFLDEPTSGMDPGARRFLWTCI 133
R ++TLSGG + S A+ L L+FLDEP +D L +
Sbjct: 807 GGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEIL 866
Query: 134 ERAVSEGRCVILTSHNMEE 152
E +S+GR +I+ SH +EE
Sbjct: 867 EELLSDGRQIIIISH-VEE 884
Score = 60.2 bits (146), Expect = 2e-09
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 469 HYSDREVRTLSGGNKRKLSTAIAL--------LGNPPLIFLDEPTSGMDPGARRFLWTCI 520
R ++TLSGG + S A+ L L+FLDEP +D L +
Sbjct: 807 GGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEIL 866
Query: 521 ERAVSEGRCVILTSHNMEE 539
E +S+GR +I+ SH +EE
Sbjct: 867 EELLSDGRQIIIISH-VEE 884
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 59.2 bits (144), Expect = 3e-09
Identities = 46/194 (23%), Positives = 71/194 (36%), Gaps = 50/194 (25%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYI 421
+++++F V GE + G +GAGKT+ + L G SG I
Sbjct: 409 LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR------------------I 450
Query: 422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV--------------NESLNKFAL 467
L F + +P L + L+K L
Sbjct: 451 SMPADSALL-----------FLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGL 499
Query: 468 GHYSDR--EV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
G ++R E R LSGG +++L+ A LL P +FLDE TS +D L+ ++
Sbjct: 500 GDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLK 559
Query: 522 RAVSEGRCVILTSH 535
+ VI H
Sbjct: 560 EEL-PDATVISVGH 572
Score = 51.9 bits (125), Expect = 5e-07
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 71 VNESLNKFALGHYSDR--EV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 124
+ L+K LG ++R E R LSGG +++L+ A LL P +FLDE TS +D
Sbjct: 490 LVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549
Query: 125 ARRFLWTCIERAVSEGRCVILTSH 148
L+ ++ + VI H
Sbjct: 550 TEDRLYQLLKEEL-PDATVISVGH 572
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 57.4 bits (138), Expect = 4e-09
Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 37/218 (16%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT------------GAIKPTSGNAYVMNH 408
A+N I+ + + L+G +G GK+T + L G + N Y N
Sbjct: 22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81
Query: 409 SIRDSMDLVRSYIGYCPQFDALNDRLTPREHL-EFYSRVRNVPSV-------LLNTIVNE 460
I + +R IG Q TP L Y + P + L+ IV +
Sbjct: 82 DILE----LRRKIGMVFQ--------TPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQ 129
Query: 461 SLNKFALGHYS----DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
SL K AL + + +LSGG +++L A L P +I +DEPTS +DP + +
Sbjct: 130 SLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKI 189
Query: 517 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
I + E +I+ +HNM++ + + +NG
Sbjct: 190 EELIIN-LKESYTIIIVTHNMQQAGRISDRTAFFLNGC 226
Score = 52.3 bits (125), Expect = 2e-07
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 5/105 (4%)
Query: 67 LNTIVNESLNKFALGHYS----DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
L+ IV +SL K AL + + +LSGG +++L A L P +I +DEPTS +D
Sbjct: 123 LDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182
Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
P + + I + E +I+ +HNM++ + + +NG
Sbjct: 183 PISTGKIEELIIN-LKESYTIIIVTHNMQQAGRISDRTAFFLNGC 226
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 58.5 bits (142), Expect = 4e-09
Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 31/206 (15%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
S +P ++ +S+ V GE + ++G NGAGK+T ++TG N + R S
Sbjct: 269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSG 328
Query: 415 DLV---RSYIGYCPQFDALNDRLTPREHLEFY--SRVRNV------PSVLLNTIVNESLN 463
+ + + +IGY ++ HL++ + VRNV S+ + V++
Sbjct: 329 ETIWDIKKHIGY----------VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQ 378
Query: 464 KFA------LG---HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
K A LG +D +LS G +R AL+ +P L+ LDEP G+DP R+
Sbjct: 379 KLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQ 438
Query: 515 FLWTCIERAVSEGRCVIL-TSHNMEE 539
+ ++ +SEG +L SH+ E+
Sbjct: 439 LVRRFVDVLISEGETQLLFVSHHAED 464
Score = 43.5 bits (103), Expect = 2e-04
Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 11/200 (5%)
Query: 366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV-MNHSIRDSMDLVRSYIGYC 424
S + G+ + +G NG+GK+ + L G + SG +H R S + ++ +
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82
Query: 425 PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL-----NKFALGHYSDREVRTLS 479
Q D L+P E R ++ + + + + +F + DR + LS
Sbjct: 83 WQ-RNNTDMLSPGED----DTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLS 137
Query: 480 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 539
G RK AL+ P L+ LDEP G+D +R+ L + G ++L + +E
Sbjct: 138 TGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDE 197
Query: 540 CEALCTKLTIMVNGQFTCLG 559
++ + G
Sbjct: 198 IPDFVQFAGVLADCTLAETG 217
Score = 43.5 bits (103), Expect = 2e-04
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TS 147
+LS G +R AL+ +P L+ LDEP G+DP R+ + ++ +SEG +L S
Sbjct: 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVS 459
Query: 148 HNMEE 152
H+ E+
Sbjct: 460 HHAED 464
Score = 41.2 bits (97), Expect = 0.001
Identities = 24/106 (22%), Positives = 44/106 (41%)
Query: 77 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 136
+F + DR + LS G RK AL+ P L+ LDEP G+D +R+ L +
Sbjct: 122 QFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL 181
Query: 137 VSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSM 182
G ++L + +E ++ + G + +++
Sbjct: 182 HQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQAL 227
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 57.3 bits (138), Expect = 5e-09
Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 40/235 (17%)
Query: 352 YANSKGTK---PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408
Y +K T A+N S + + ++G G+GK+T ++ G I +G V ++
Sbjct: 14 YTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDY 73
Query: 409 SI-------RDSMDLVRSYIGYC---PQFDALNDRLTP----------REHLEFYSRVRN 448
+I ++ L R IG P++ + + E Y +
Sbjct: 74 AIPANLKKIKEVKRL-RKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAY---KK 129
Query: 449 VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTA--IALLGNPPLIFLDEPTS 506
VP +L + E Y R LSGG KR+++ A IA+ GN + LDEPT
Sbjct: 130 VPELLKLVQLPED--------YVKRSPFELSGGQKRRVALAGIIAMDGNT--LVLDEPTG 179
Query: 507 GMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
G+DP ER E + +I+ +HNM++ + ++ +M G+ +GS
Sbjct: 180 GLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
Score = 53.5 bits (128), Expect = 9e-08
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 83 YSDREVRTLSGGNKRKLSTA--IALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE- 139
Y R LSGG KR+++ A IA+ GN + LDEPT G+DP ER E
Sbjct: 143 YVKRSPFELSGGQKRRVALAGIIAMDGNT--LVLDEPTGGLDPKGEEDFINLFERLNKEY 200
Query: 140 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
+ +I+ +HNM++ + ++ +M G+ +GS
Sbjct: 201 KKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 56.5 bits (137), Expect = 8e-09
Identities = 67/245 (27%), Positives = 106/245 (43%), Gaps = 55/245 (22%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L V+ L K+Y KG + +SF + GE G++G +G+GKTT L+ + P +G
Sbjct: 7 LSVRGLTKLYGPRKGCR----DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGE 62
Query: 403 A-YVMNH-SIRD--SMD------LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSV 452
Y M +RD ++ L+R+ G+ Q PR+ L V
Sbjct: 63 VHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQ--------HPRDGLR--------MQV 106
Query: 453 LLNTIVNESLNKFALG--HYSD-REV-------------------RTLSGGNKRKLSTAI 490
+ E L A+G HY D R T SGG +++L A
Sbjct: 107 SAGGNIGERL--MAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164
Query: 491 ALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTI 549
L+ +P L+F+DEPT G+D + L + V E G V++ +H++ L +L +
Sbjct: 165 NLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLV 224
Query: 550 MVNGQ 554
M G+
Sbjct: 225 MKQGR 229
Score = 41.8 bits (99), Expect = 4e-04
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTS 147
T SGG +++L A L+ +P L+F+DEPT G+D + L + V E G V++ +
Sbjct: 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT 209
Query: 148 HNMEECEALCTKLTIMVNGQ 167
H++ L +L +M G+
Sbjct: 210 HDLAVARLLAHRLLVMKQGR 229
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 55.9 bits (135), Expect = 1e-08
Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 19/227 (8%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L V+ L K Y G + +S G+ ++G +G+GK+T + + KP++G+
Sbjct: 7 LEVEDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGS 62
Query: 403 AYVMNHSIRDSMD--------------LVRSYIGYCPQFDALNDRLTPREH-LEFYSRVR 447
V IR D +R+ +G Q L +T E+ +E V
Sbjct: 63 IRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL 122
Query: 448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 507
V + L K + +D LSGG +++++ A AL P ++ DEPTS
Sbjct: 123 GVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSA 182
Query: 508 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
+DP + ++ EGR +++ +H M + + + + G+
Sbjct: 183 LDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGK 229
Score = 47.4 bits (113), Expect = 8e-06
Identities = 24/93 (25%), Positives = 46/93 (49%)
Query: 75 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 134
L K + +D LSGG +++++ A AL P ++ DEPTS +DP + ++
Sbjct: 137 LAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQ 196
Query: 135 RAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
EGR +++ +H M + + + + G+
Sbjct: 197 DLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGK 229
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 55.8 bits (134), Expect = 1e-08
Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 19/198 (9%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT------GAIKPTSGNAYVMNHSI 410
T A+ IS + R + ++G +G GK+T K L G +K G +I
Sbjct: 18 NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK-VEGVVDFFGQNI 76
Query: 411 RDS---MDLVRSYIGYCPQFDALND-RLTPREHLEFYSRVR-NVPSVLLNTIVNESLNKF 465
D ++ +R IG F N ++ E++ + R+ +P L+ IV +L
Sbjct: 77 YDPRININRLRRQIGMV--FQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGA 134
Query: 466 ALGHYS----DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
AL ++ LSGG +++L A AL P ++ +DEP S +DP A + I
Sbjct: 135 ALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIH 194
Query: 522 RAVSEGRCVILTSHNMEE 539
SE I+T HNM++
Sbjct: 195 SLRSELTIAIVT-HNMQQ 211
Score = 46.6 bits (110), Expect = 1e-05
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
V + LNK ALG LSGG +++L A AL P ++ +DEP S +DP A +
Sbjct: 140 VKDKLNKSALG---------LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVE 190
Query: 131 TCIERAVSEGRCVILTSHNMEE 152
I SE I+T HNM++
Sbjct: 191 ELIHSLRSELTIAIVT-HNMQQ 211
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 55.4 bits (134), Expect = 1e-08
Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 37/205 (18%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTT---TFKMLTGAIKP--TSGNAYVMNHSIR 411
G K A+ I+ + + + L+G +G GK+T + + + G I
Sbjct: 12 GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIY 71
Query: 412 DS-MDLV--RSYIGYCPQ---------FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
D +D+V R +G Q +D N PR H + L+ IV
Sbjct: 72 DKKIDVVELRRRVGMVFQKPNPFPMSIYD--NIAYGPRLHGIKDKKE-------LDEIVE 122
Query: 460 ESLNKFAL-GHYSDREVR---TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
ESL K AL DR LSGG +++L A AL P ++ LDEPTS +DP A
Sbjct: 123 ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATG- 181
Query: 516 LWTCIERAVSEGR---CVILTSHNM 537
IE + E + +++ +HNM
Sbjct: 182 ---KIEELIQELKKKYTIVIVTHNM 203
Score = 47.3 bits (113), Expect = 8e-06
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 67 LNTIVNESLNKFAL-GHYSDREVR---TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
L+ IV ESL K AL DR LSGG +++L A AL P ++ LDEPTS +D
Sbjct: 117 LDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176
Query: 123 PGARRFLWTCIERAVSEGR---CVILTSHNM 150
P A IE + E + +++ +HNM
Sbjct: 177 PIATG----KIEELIQELKKKYTIVIVTHNM 203
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 57.1 bits (138), Expect = 2e-08
Identities = 51/163 (31%), Positives = 73/163 (44%), Gaps = 19/163 (11%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G + ++ I + G GLLG NGAGK+T K+L G + P SG + I+
Sbjct: 323 GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI-GLAKGIK----- 376
Query: 417 VRSYIGYCP--QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-GHYSDR 473
+GY Q + L +P +HL R P L + + L F G
Sbjct: 377 ----LGYFAQHQLEFLRADESPLQHL-----ARLAPQELEQKL-RDYLGGFGFQGDKVTE 426
Query: 474 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
E R SGG K +L A+ + P L+ LDEPT+ +D R+ L
Sbjct: 427 ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQAL 469
Score = 39.4 bits (92), Expect = 0.005
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 40/208 (19%)
Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN---------AYVM 406
+G + ++ + + G+ GL+G NG GK+T +L I G+ A+V
Sbjct: 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVN 70
Query: 407 NHS-------IRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSR--------VRNVPS 451
+ + +D R Y Q N+R + + +R+ +
Sbjct: 71 QETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAA 130
Query: 452 VLLNTI--VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
LL+ + NE L +R V SGG + +L+ A AL+ L+ LDEPT+ +D
Sbjct: 131 SLLHGLGFSNEQL---------ERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
Query: 510 PGARRFLWTCIERAV-SEGRCVILTSHN 536
A +W +E+ + S +IL SH+
Sbjct: 182 LDA--VIW--LEKWLKSYQGTLILISHD 205
Score = 35.9 bits (83), Expect = 0.062
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCV 143
+R V SGG + +L+ A AL+ L+ LDEPT+ +D A +W +E+ + S +
Sbjct: 144 ERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDA--VIW--LEKWLKSYQGTL 199
Query: 144 ILTSHN 149
IL SH+
Sbjct: 200 ILISHD 205
Score = 33.2 bits (76), Expect = 0.42
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 87 EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 129
E R SGG K +L A+ + P L+ LDEPT+ +D R+ L
Sbjct: 427 ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQAL 469
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 54.9 bits (133), Expect = 2e-08
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 24/190 (12%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 418
P + +S + G+ L+G +G GK+T +L PTSG + IRD ++ +R
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLR 76
Query: 419 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH--------- 469
S IG Q L D T E++ + V E K A H
Sbjct: 77 SQIGLVSQEPVLFDG-TIAENIRYGKPDATDEEV-------EEAAKKANIHDFIMSLPDG 128
Query: 470 YSDREV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
Y D V LSGG K++++ A ALL NP ++ LDE TS +D + + + ++RA
Sbjct: 129 Y-DTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA-M 186
Query: 526 EGRCVILTSH 535
+GR I+ +H
Sbjct: 187 KGRTTIVIAH 196
Score = 41.4 bits (98), Expect = 6e-04
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
LSGG K++++ A ALL NP ++ LDE TS +D + + + ++RA +GR I+ +H
Sbjct: 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA-MKGRTTIVIAH 196
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 55.2 bits (133), Expect = 2e-08
Identities = 58/234 (24%), Positives = 93/234 (39%), Gaps = 29/234 (12%)
Query: 355 SKGTKPAVNQISFGV-GR------------GECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
T A+ +SF V GR G+ GL+G NG+GK+T KML P+ G
Sbjct: 7 HSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEG 66
Query: 402 NAYVMNHSIR--DSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP--------S 451
+ + S R + Y PQ + +T RE + + P
Sbjct: 67 EILLDAQPLESWSSKAFARK-VAYLPQQLPAAEGMTVRELVA----IGRYPWHGALGRFG 121
Query: 452 VLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 511
V E+++ L + R V +LSGG +++ A+ + + + LDEPTS +D
Sbjct: 122 AADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIA 181
Query: 512 ARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+ + + R E G VI H++ C L + G+ G+ L
Sbjct: 182 HQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
Score = 39.0 bits (91), Expect = 0.004
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
V E+++ L + R V +LSGG +++ A+ + + + LDEPTS +D + +
Sbjct: 128 VEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVL 187
Query: 131 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
+ R E G VI H++ C L + G+ G+ L
Sbjct: 188 ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 55.0 bits (132), Expect = 2e-08
Identities = 61/237 (25%), Positives = 102/237 (43%), Gaps = 43/237 (18%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML------------TGAIKPTSGN 402
S G A++ IS E L+G +G GK+T + L TG IK N
Sbjct: 13 SYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN 72
Query: 403 AYVMNHSIRDSMDLV--RSYIGYCPQFDALNDRLTP-----REHLEFYSRVRNVPSV-LL 454
Y MDLV R +G Q + TP +++ + ++ V L+
Sbjct: 73 IY------GSKMDLVELRKEVGMVFQ------QPTPFPFSVYDNVAYGLKIAGVKDKELI 120
Query: 455 NTIVNESLNKFALGHYS----DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 510
+ V ESL + A+ + DR + SGG ++++ A AL P ++ LDEPTS +DP
Sbjct: 121 DQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDP 180
Query: 511 GARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+ + IE + E + I+ +HN+++ + + ++NG G +
Sbjct: 181 ISS----SEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
Score = 48.5 bits (115), Expect = 3e-06
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 66 LLNTIVNESLNKFALGHYS----DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 121
L++ V ESL + A+ + DR + SGG ++++ A AL P ++ LDEPTS +
Sbjct: 119 LIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSAL 178
Query: 122 DPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
DP + + IE + E + I+ +HN+++ + + ++NG G +
Sbjct: 179 DPISS----SEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 55.9 bits (135), Expect = 2e-08
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 26/211 (12%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
V+ S + GE L+GL+G+GK+T + + G + G+ V S+D+
Sbjct: 39 GVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLV--KDGDGSVDVAN-- 94
Query: 421 IGYCP-----------------QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 463
C QF AL T E++ F ++ +P V+E L
Sbjct: 95 ---CDAATLRRLRTHRVSMVFQQF-ALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLE 150
Query: 464 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIER 522
L ++DR+ LSGG ++++ A A P++ +DEP S +DP R L +E
Sbjct: 151 LVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLEL 210
Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNG 553
+ ++ SH+++E + ++ IM G
Sbjct: 211 QSKLKKTIVFVSHDLDEALKIGNRIAIMEGG 241
Score = 47.1 bits (112), Expect = 2e-05
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 39 QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK 98
QF AL T E++ F ++ +P V+E L L ++DR+ LSGG +++
Sbjct: 114 QF-ALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWADRKPGELSGGMQQR 172
Query: 99 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVILTSHNMEECEALC 157
+ A A P++ +DEP S +DP R L +E + ++ SH+++E +
Sbjct: 173 VGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLDEALKIG 232
Query: 158 TKLTIMVNG 166
++ IM G
Sbjct: 233 NRIAIMEGG 241
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 56.4 bits (136), Expect = 2e-08
Identities = 48/189 (25%), Positives = 73/189 (38%), Gaps = 60/189 (31%)
Query: 352 YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG---------- 401
+ANS V +SF G+ ++G GAGKTT +L PT G
Sbjct: 344 FANSS---QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDIN 400
Query: 402 ----------------NAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRL-----TPREHL 440
+A + N SIR+++ L R A ++ + H
Sbjct: 401 TVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE--------GATDEEVYEAAKAAAAHD 452
Query: 441 EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF 500
R +T+V E N+ LSGG +++L+ A A+L N P++
Sbjct: 453 FILKRSNG-----YDTLVGERGNR-------------LSGGERQRLAIARAILKNAPILV 494
Query: 501 LDEPTSGMD 509
LDE TS +D
Sbjct: 495 LDEATSALD 503
Score = 38.7 bits (90), Expect = 0.007
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
LSGG +++L+ A A+L N P++ LDE TS +D
Sbjct: 472 LSGGERQRLAIARAILKNAPILVLDEATSALD 503
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 54.9 bits (132), Expect = 3e-08
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 21/122 (17%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
I Y P+ +ND+ E +E +++ L V++ L+K ALG LSG
Sbjct: 140 IAYGPRLHGINDKKQLEEIVE-----KSLRKAALWDEVSDRLDKNALG---------LSG 185
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNM 150
G +++L A L P ++ LDEPTS +DP A IE + E R +++ +HNM
Sbjct: 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKAT----AKIEDLIQELRGSYTIMIVTHNM 241
Query: 151 EE 152
++
Sbjct: 242 QQ 243
Score = 54.9 bits (132), Expect = 3e-08
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 21/122 (17%)
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
I Y P+ +ND+ E +E +++ L V++ L+K ALG LSG
Sbjct: 140 IAYGPRLHGINDKKQLEEIVE-----KSLRKAALWDEVSDRLDKNALG---------LSG 185
Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNM 537
G +++L A L P ++ LDEPTS +DP A IE + E R +++ +HNM
Sbjct: 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKAT----AKIEDLIQELRGSYTIMIVTHNM 241
Query: 538 EE 539
++
Sbjct: 242 QQ 243
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 55.9 bits (135), Expect = 3e-08
Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 23/224 (10%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI----RD 412
V ISF + GE GL+G +G+GK+TT L I + G + + R
Sbjct: 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRR 355
Query: 413 SMDLVRSYIGYCPQ--FDALNDRLTPR----EHLEFYSRVRNVPSVLLNTIVNESLNKFA 466
+ VR I Q +LN RL E L + + I + +
Sbjct: 356 QLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVI--AVMEEVG 413
Query: 467 LGHYSDREVR-----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 521
L D E R SGG +++++ A AL+ P LI LDEPTS +D + + ++
Sbjct: 414 L----DPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLK 469
Query: 522 RAVSEGRCV-ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+ + + SH++ ALC ++ ++ G+ G +
Sbjct: 470 SLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513
Score = 41.6 bits (98), Expect = 0.001
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 92 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV-ILTSHNM 150
SGG +++++ A AL+ P LI LDEPTS +D + + ++ + + + SH++
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHL 177
ALC ++ ++ G+ G +
Sbjct: 487 HVVRALCHQVIVLRQGEVVEQGDCERV 513
Score = 37.4 bits (87), Expect = 0.022
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149
LSGG ++++ A+ALL P L+ DEPT+ +D + + + E ++ +HN
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216
Query: 150 MEECEALCTKLTIMVNGQ 167
+ L ++ +M NG+
Sbjct: 217 LSIVRKLADRVAVMQNGR 234
Score = 37.4 bits (87), Expect = 0.022
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 536
LSGG ++++ A+ALL P L+ DEPT+ +D + + + E ++ +HN
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216
Query: 537 MEECEALCTKLTIMVNGQ 554
+ L ++ +M NG+
Sbjct: 217 LSIVRKLADRVAVMQNGR 234
Score = 29.3 bits (66), Expect = 6.9
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTT 388
L ++ L + + + VN +S + GE L+G +G+GK+ T
Sbjct: 6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVT 51
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 55.3 bits (134), Expect = 3e-08
Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 28/198 (14%)
Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLV-----RSYIGYCPQFDALN 431
+ G +GAGKT+ ++G +P G + + D+ + + IGY Q DA
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQ-DA-- 85
Query: 432 DRLTPREHLEFYSRVR--------NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNK 483
RL P H Y +VR + IV +L + DR +LSGG K
Sbjct: 86 -RLFP--H---Y-KVRGNLRYGMAKSMVAQFDKIV--AL--LGIEPLLDRYPGSLSGGEK 134
Query: 484 RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL-TSHNMEECEA 542
++++ ALL P L+ +DEP + +D +R L +ER E IL SH+++E
Sbjct: 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILR 194
Query: 543 LCTKLTIMVNGQFTCLGS 560
L ++ ++ G+ G
Sbjct: 195 LADRVVVLEQGKVKAFGP 212
Score = 45.3 bits (108), Expect = 5e-05
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 79 ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 138
+ DR +LSGG K++++ ALL P L+ +DEP + +D +R L +ER
Sbjct: 117 GIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAR 176
Query: 139 EGRCVIL-TSHNMEECEALCTKLTIMVNGQFTCLGS 173
E IL SH+++E L ++ ++ G+ G
Sbjct: 177 EINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 54.2 bits (131), Expect = 3e-08
Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 12/227 (5%)
Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
+ + Y G A+ I+ +GE LLG +GAGK++ ++L P SG
Sbjct: 5 LNGINCFY----GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 405 VMNHSIRDS-------MDLVRSYIGYCPQFDALNDRLTPREHL-EFYSRVRNVPSVLLNT 456
+ + S + +R +G Q L LT +++L E RV +
Sbjct: 61 IAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA 120
Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
+ L + L Y+DR LSGG +++++ A AL+ P ++ DEPT+ +DP +
Sbjct: 121 RAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180
Query: 517 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH 563
+ I G ++ +H +E +++ M NG G A+
Sbjct: 181 VSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
Score = 40.8 bits (96), Expect = 0.001
Identities = 28/104 (26%), Positives = 51/104 (49%)
Query: 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 132
+ L + L Y+DR LSGG +++++ A AL+ P ++ DEPT+ +DP + +
Sbjct: 124 KLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI 183
Query: 133 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH 176
I G ++ +H +E +++ M NG G A+
Sbjct: 184 IRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 55.7 bits (135), Expect = 4e-08
Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 33/215 (15%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI----RDSMDL 416
AV+ IS + RG+ GL+G +G+GK+T L I P+ G I R M
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-PSQGEIRFDGQDIDGLSRKEMRP 360
Query: 417 VRSYIGYCPQ--FDALNDRLTPRE-----------HLEFYSRVRNVPSVLLNTIVNESLN 463
+R + Q + +L+ R+T + L R + V L L+
Sbjct: 361 LRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL----EEVGLD 416
Query: 464 KFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE-- 521
Y SGG +++++ A AL+ P LI LDEPTS +D + ++
Sbjct: 417 PATRNRYPHE----FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQA---QVLDLL 469
Query: 522 RAVSE--GRCVILTSHNMEECEALCTKLTIMVNGQ 554
R + + G + SH++ ALC ++ +M +G+
Sbjct: 470 RDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504
Score = 39.6 bits (93), Expect = 0.004
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 92 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE--RAVSE--GRCVILTS 147
SGG +++++ A AL+ P LI LDEPTS +D + ++ R + + G + S
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQA---QVLDLLRDLQQKHGLSYLFIS 484
Query: 148 HNMEECEALCTKLTIMVNGQ 167
H++ ALC ++ +M +G+
Sbjct: 485 HDLAVVRALCHRVIVMRDGK 504
Score = 38.4 bits (90), Expect = 0.009
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTT 388
GT AV ISF + GE L+G +G+GK+ T
Sbjct: 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVT 52
Score = 34.9 bits (81), Expect = 0.11
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
LSGG ++++ A+AL P L+ DEPT+ +D
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
Score = 34.9 bits (81), Expect = 0.11
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
LSGG ++++ A+AL P L+ DEPT+ +D
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 54.8 bits (132), Expect = 4e-08
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 67 LNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
++ V ESL + AL D LSGG +++L A A+ +P +I +DEP S +D
Sbjct: 153 IDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 166
P A + IE E VI+T HNM++ + K + + G
Sbjct: 213 PVATSKIEDLIEELAEEYTVVIVT-HNMQQAARISDKTAVFLTG 255
Score = 54.8 bits (132), Expect = 4e-08
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 454 LNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
++ V ESL + AL D LSGG +++L A A+ +P +I +DEP S +D
Sbjct: 153 IDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
Query: 510 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 553
P A + IE E VI+T HNM++ + K + + G
Sbjct: 213 PVATSKIEDLIEELAEEYTVVIVT-HNMQQAARISDKTAVFLTG 255
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 53.3 bits (129), Expect = 5e-08
Identities = 49/205 (23%), Positives = 78/205 (38%), Gaps = 42/205 (20%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRD-SMDL-VRSY 420
++ + +GE L+G NG+GK+T K + G + T G I D + R
Sbjct: 19 VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI---VNESLNKFALGHYSDREVRT 477
I Q+ P E +P V VNE
Sbjct: 79 IFLAFQY--------PPE----------IPGVKNADFLRYVNEGF--------------- 105
Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 537
SGG K++ LL P L LDEP SG+D A R + I + EG+ V++ +H
Sbjct: 106 -SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164
Query: 538 EECEAL-CTKLTIMVNGQFTCLGSA 561
+ + ++ ++ +G+ G
Sbjct: 165 RLLDYIKPDRVHVLYDGRIVKSGDK 189
Score = 42.1 bits (100), Expect = 2e-04
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
SGG K++ LL P L LDEP SG+D A R + I + EG+ V++ +H
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164
Query: 151 EECEAL-CTKLTIMVNGQFTCLGSA 174
+ + ++ ++ +G+ G
Sbjct: 165 RLLDYIKPDRVHVLYDGRIVKSGDK 189
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 55.7 bits (134), Expect = 5e-08
Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 43/210 (20%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
P + ISF + +G+ + G G+GK++ M+ G ++P+ G + HS R
Sbjct: 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGK---IKHSGR-------- 488
Query: 420 YIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR 476
I + PQ + T ++++ F Y R SV+ + E + F D+ V
Sbjct: 489 -ISFSPQTSWIMPG-TIKDNIIFGLSYDEYR-YTSVIKACQLEEDIALFP---EKDKTVL 542
Query: 477 -----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 531
TLSGG + ++S A A+ + L LD P + +D E+ + E C+
Sbjct: 543 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD--------VVTEKEIFE-SCL- 592
Query: 532 LTSHNMEECEALCTKLTIMVNGQFTCLGSA 561
C+ + K I+V + L A
Sbjct: 593 --------CKLMSNKTRILVTSKLEHLKKA 614
Score = 46.4 bits (110), Expect = 4e-05
Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 39/224 (17%)
Query: 339 SGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP 398
SG + V+ L Y ++ + + +SF V G+ GLLG G+GK+T +L+ ++
Sbjct: 1214 SGGQMDVQGLTAKY--TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKST---LLSALLRL 1268
Query: 399 TSGNAYVMNHSIR-DSMDLV--RSYIGYCPQ----FDALNDRLTPREHLEFYSRV----- 446
S + + +S+ L R G PQ F T R++L+ Y +
Sbjct: 1269 LSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-----TFRKNLDPYEQWSDEEI 1323
Query: 447 -RNVPSVLLNTIVNESLNK--FAL--GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL 501
+ V L +++ + +K F L G Y LS G+K+ + A ++L ++ L
Sbjct: 1324 WKVAEEVGLKSVIEQFPDKLDFVLVDGGY------VLSNGHKQLMCLARSILSKAKILLL 1377
Query: 502 DEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHNME---ECE 541
DEP++ +DP + + ++++ S C VIL+ H +E EC+
Sbjct: 1378 DEPSAHLDPVTLQIIRKTLKQSFSN--CTVILSEHRVEALLECQ 1419
Score = 36.4 bits (84), Expect = 0.051
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHN 149
LS G+K+ + A ++L ++ LDEP++ +DP + + ++++ S C VIL+ H
Sbjct: 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSN--CTVILSEHR 1411
Query: 150 ME---ECE 154
+E EC+
Sbjct: 1412 VEALLECQ 1419
Score = 31.4 bits (71), Expect = 1.8
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 16/156 (10%)
Query: 34 IGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR- 89
I + PQ + T ++++ F Y R SV+ + E + F D+ V
Sbjct: 489 ISFSPQTSWIMPG-TIKDNIIFGLSYDEYR-YTSVIKACQLEEDIALFP---EKDKTVLG 543
Query: 90 ----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW-TCIERAVSEGRCVI 144
TLSGG + ++S A A+ + L LD P + +D + ++ +C+ + +S ++
Sbjct: 544 EGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRIL 603
Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSK 180
+TS +E + K+ ++ G G+ + L++K
Sbjct: 604 VTS-KLEHLKK-ADKILLLHEGVCYFYGTFSELQAK 637
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 54.0 bits (130), Expect = 5e-08
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 33/172 (19%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
AV +SF + G+ ++G NG+GK+T KML G I+PTSG + +H L
Sbjct: 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHP------LHFGD 81
Query: 421 IGYCPQ-----FDALNDRLTPREHLEFYSRVRNVPSVLLNT---------IVNESLNKFA 466
Y Q F + L PR+ + S++ + P + LNT + E+L +
Sbjct: 82 YSYRSQRIRMIFQDPSTSLNPRQRI---SQILDFP-LRLNTDLEPEQREKQIIETLRQVG 137
Query: 467 L-----GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
L +Y L+ G K++L A AL+ P +I DE + +D R
Sbjct: 138 LLPDHASYYP----HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMR 185
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 53.3 bits (129), Expect = 6e-08
Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 8/162 (4%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
P + ISF + GE G++G G+GK++ L ++ +SG+ + I +
Sbjct: 13 RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDIS-KI 71
Query: 415 DL--VRSYIGYCPQFDALNDRLTPREHLEFYSRVRN--VPSVLLNTIVNESLNKFALGHY 470
L +RS I PQ D + T R +L+ + + + L + E + G
Sbjct: 72 GLHDLRSRISIIPQ-DPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLD 130
Query: 471 SDREVR--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 510
+ E LS G ++ L A ALL ++ LDE T+ +DP
Sbjct: 131 TVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDP 172
Score = 35.2 bits (82), Expect = 0.061
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 123
LS G ++ L A ALL ++ LDE T+ +DP
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVDP 172
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 54.1 bits (130), Expect = 6e-08
Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 30/192 (15%)
Query: 326 VRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGK 385
+ ++E + S D + + P + I+ + +GE + G G+GK
Sbjct: 22 EKAKQENNDRKHSSDDNNLFFSNLCLVGA-----PVLKNINLKIEKGEMLAITGSTGSGK 76
Query: 386 TTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEF--- 442
T+ ++ G ++P+ G + HS R I + QF + T +E++ F
Sbjct: 77 TSLLMLILGELEPSEG---KIKHSGR---------ISFSSQFSWIMPG-TIKENIIFGVS 123
Query: 443 YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR-----TLSGGNKRKLSTAIALLGNPP 497
Y R SV+ + E + KF D V TLSGG + ++S A A+ +
Sbjct: 124 YDEYR-YKSVVKACQLEEDITKFP---EKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179
Query: 498 LIFLDEPTSGMD 509
L LD P +D
Sbjct: 180 LYLLDSPFGYLD 191
Score = 28.7 bits (64), Expect = 9.3
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 34 IGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVR- 89
I + QF + T +E++ F Y R SV+ + E + KF D V
Sbjct: 100 ISFSSQFSWIMPG-TIKENIIFGVSYDEYR-YKSVVKACQLEEDITKFP---EKDNTVLG 154
Query: 90 ----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
TLSGG + ++S A A+ + L LD P +D
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 55.1 bits (133), Expect = 6e-08
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 21/198 (10%)
Query: 352 YANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR 411
Y + + + IS + GE ++G +G+GK+T +L KPTSG V +
Sbjct: 14 YPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVA 73
Query: 412 DSMD------LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES---- 461
+D L R + G+ Q L LT +++E VP+V +
Sbjct: 74 T-LDADALAQLRREHFGFIFQRYHLLSHLTAAQNVE-------VPAVYAGLERKQRLLRA 125
Query: 462 ---LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
L + L + + LSGG ++++S A AL+ +I DEPT +D + +
Sbjct: 126 QELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMA 185
Query: 519 CIERAVSEGRCVILTSHN 536
+ + G VI+ +H+
Sbjct: 186 ILHQLRDRGHTVIIVTHD 203
Score = 37.4 bits (87), Expect = 0.019
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 131
E L + L + + LSGG ++++S A AL+ +I DEPT +D + +
Sbjct: 126 QELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMA 185
Query: 132 CIERAVSEGRCVILTSHN 149
+ + G VI+ +H+
Sbjct: 186 ILHQLRDRGHTVIIVTHD 203
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 52.9 bits (127), Expect = 7e-08
Identities = 44/201 (21%), Positives = 91/201 (45%), Gaps = 27/201 (13%)
Query: 358 TKPAVN---QISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-S 413
T+P +SF + GE L+G +G+GK+T +L +P G + I
Sbjct: 23 TRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYE 82
Query: 414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV--------NESLNKF 465
+ S + Q L R + ++++ + + S + + +++
Sbjct: 83 HKYLHSKVSLVGQEPVLFAR-SLQDNIAY-----GLQSCSFECVKEAAQKAHAHSFISEL 136
Query: 466 ALGHYSDREVR--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 523
A G+ ++ + LSGG K++++ A AL+ NP ++ LDE TS +D + + +++A
Sbjct: 137 ASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ----QVQQA 192
Query: 524 VSEG---RCVILTSHNMEECE 541
+ + R V++ +H + E
Sbjct: 193 LYDWPERRTVLVIAHRLSTVE 213
Score = 45.2 bits (107), Expect = 3e-05
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 77 KFALGHYSDREVR--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIE 134
+ A G+ ++ + LSGG K++++ A AL+ NP ++ LDE TS +D + + ++
Sbjct: 135 ELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ----QVQ 190
Query: 135 RAVSEG---RCVILTSHNMEECE 154
+A+ + R V++ +H + E
Sbjct: 191 QALYDWPERRTVLVIAHRLSTVE 213
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 53.3 bits (128), Expect = 8e-08
Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 22/185 (11%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYV----MNHSIRDSMDLVRSY 420
+S V GE L+G NGAGK+T + G SG+ + + R+Y
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 421 IGYCPQFDALNDRLTPREHLE-FYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 479
L+ + TP + ++ + P ++N+ AL R LS
Sbjct: 77 ---------LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLS 127
Query: 480 GGNKRKLSTAIALL-----GNPP--LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 532
GG +++ A +L NP L+ LDEP + +D + L + +G +++
Sbjct: 128 GGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVM 187
Query: 533 TSHNM 537
+SH++
Sbjct: 188 SSHDL 192
Score = 43.7 bits (103), Expect = 1e-04
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 62 VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-----GNPP--LIFL 114
P ++N+ AL R LSGG +++ A +L NP L+ L
Sbjct: 97 QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156
Query: 115 DEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
DEP + +D + L + +G ++++SH++
Sbjct: 157 DEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL 192
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 53.2 bits (127), Expect = 9e-08
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 70 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL---GNPPLIFLDEPTSGMDPGAR 126
+V + L ++ +S G KR L+ +ALL L+ +DEP +G+ P
Sbjct: 169 LVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLL 228
Query: 127 RFLWTCIERAVSEGRCVILTSHN 149
R L ++ +G +I T+H+
Sbjct: 229 RKLVELLKELSEKGAQLIFTTHS 251
Score = 53.2 bits (127), Expect = 9e-08
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL---GNPPLIFLDEPTSGMDPGAR 513
+V + L ++ +S G KR L+ +ALL L+ +DEP +G+ P
Sbjct: 169 LVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLL 228
Query: 514 RFLWTCIERAVSEGRCVILTSHN 536
R L ++ +G +I T+H+
Sbjct: 229 RKLVELLKELSEKGAQLIFTTHS 251
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 54.5 bits (132), Expect = 9e-08
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 40/179 (22%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L V+ L K + P ++ + GE ++G NG GKTT + L G ++P SG
Sbjct: 320 LEVENLTKGF----DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG- 374
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQ-----FDALNDRLTPREHLEFYSR-------VRNVP 450
+++ S + + IGY Q F+ ND LT + + + + VR
Sbjct: 375 ------TVKWSEN---ANIGYYAQDHAYDFE--ND-LTLFDWMSQWRQEGDDEQAVRGTL 422
Query: 451 SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
LL + + + K V+ LSGG K ++ ++ P ++ +DEPT+ MD
Sbjct: 423 GRLLFS--QDDIKK---------SVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
Score = 49.5 bits (119), Expect = 4e-06
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
G KP IS G G +GL+G NG GK+T K+L G ++P++GN
Sbjct: 12 GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGN 57
Score = 31.4 bits (72), Expect = 1.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 88 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
V+ LSGG K ++ ++ P ++ +DEPT+ MD
Sbjct: 436 VKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 53.2 bits (127), Expect = 1e-07
Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 32/229 (13%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY-----VMNHSIRDS 413
K ++Q+S G L+G G+GKTT + L SG Y + SI +
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93
Query: 414 MDLV--RSYIGYCPQ------FDALND--------RLTPREHLEFYSRVRNVPSVLLNTI 457
D++ R +G Q +++ +L PR+ ++ R + V L
Sbjct: 94 RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQAR-LTEVGLWDA 152
Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
V + L SD R LSGG ++ L A L NP ++ LDEPTS +DP +
Sbjct: 153 VKDRL--------SDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIE 203
Query: 518 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
I R++++ VI+ +HN+ + + + + +G+ G L S
Sbjct: 204 EFI-RSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251
Score = 47.4 bits (112), Expect = 8e-06
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 84 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 143
SD R LSGG ++ L A L NP ++ LDEPTS +DP + I R++++ V
Sbjct: 158 SDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFI-RSLADRLTV 215
Query: 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 179
I+ +HN+ + + + + +G+ G L S
Sbjct: 216 IIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 52.2 bits (126), Expect = 1e-07
Identities = 48/197 (24%), Positives = 69/197 (35%), Gaps = 47/197 (23%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTF---KM-LTGAIKPTSGNAYVMNHSIRDSMDLV 417
++I F ++G NGAGKTT K LTG + P S IR+ V
Sbjct: 15 RSEIEF---FSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGE--V 69
Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSR------VRNVPSVLLNTIV--NESLNKFALGH 469
R+ + L F + + ++L N I N L
Sbjct: 70 RAQV-----------------KLAFENANGKKYTITRSLAILENVIFCHQGESNWPLL-- 110
Query: 470 YSDREVRTLSGGNKRKLSTAIALL------GNPPLIFLDEPTSGMDPGARRF-LWTCIE- 521
SGG K S I L N ++ LDEPT+ +D L IE
Sbjct: 111 ---DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEE 167
Query: 522 RAVSEGRCVILTSHNME 538
R + +I+ +H+ E
Sbjct: 168 RKSQKNFQLIVITHDEE 184
Score = 44.5 bits (106), Expect = 5e-05
Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 21/116 (18%)
Query: 52 HLEFYSR------VRNVPSVLLNTIV--NESLNKFALGHYSDREVRTLSGGNKRKLSTAI 103
L F + + ++L N I N L SGG K S I
Sbjct: 74 KLAFENANGKKYTITRSLAILENVIFCHQGESNWPLL-----DMRGRCSGGEKVLASLII 128
Query: 104 ALL------GNPPLIFLDEPTSGMDPGARRF-LWTCIE-RAVSEGRCVILTSHNME 151
L N ++ LDEPT+ +D L IE R + +I+ +H+ E
Sbjct: 129 RLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE 184
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 51.4 bits (123), Expect = 1e-07
Identities = 40/170 (23%), Positives = 58/170 (34%), Gaps = 60/170 (35%)
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD 428
V GE G++G NG GKTT K+L G + P N D D + Y PQ+
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN---------DEWDGIT--PVYKPQY- 69
Query: 429 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 488
LSGG ++++
Sbjct: 70 -----------------------------------------------IDLSGGELQRVAI 82
Query: 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG-RCVILTSHNM 537
A ALL N DEP++ +D R I R EG + ++ H++
Sbjct: 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132
Score = 34.5 bits (79), Expect = 0.068
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEG-RCVILTSHN 149
LSGG ++++ A ALL N DEP++ +D R I R EG + ++ H+
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131
Query: 150 M 150
+
Sbjct: 132 L 132
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 52.3 bits (125), Expect = 2e-07
Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 40/234 (17%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G K AV ++ V RG L+G +G GKTT + + T G A V + D D+
Sbjct: 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPG-ARVTGRILLDGQDI 73
Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP--SVLLNTIVNESL----NKFALGHY 470
Y P+ D + R R + + P SV N + L ++ L
Sbjct: 74 ------YGPRVDPVAMR---RRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEV 124
Query: 471 SDREVRT-----------------LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
++R +R LSGG +++L A AL P ++ +DEPTS +DP +
Sbjct: 125 AERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAST 184
Query: 514 ---RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
L T +++ + +I+ +HNM + + + + G G L
Sbjct: 185 ARIEDLMTDLKKVTT----IIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234
Score = 43.5 bits (102), Expect = 1e-04
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR---RFLWTCIERAVSEGRCVILTS 147
LSGG +++L A AL P ++ +DEPTS +DP + L T +++ + +I+ +
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTT----IIIVT 204
Query: 148 HNMEECEALCTKLTIMVNGQFTCLGSATHL 177
HNM + + + + G G L
Sbjct: 205 HNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 50.8 bits (122), Expect = 2e-07
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 67 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGMDPG 124
L +++ L LG +++ TLSGG +++ A L PP L LDEP++G+
Sbjct: 68 LQFLIDVGLGYLTLG----QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ 123
Query: 125 ARRFLWTCIERAVSEGRCVILTSHN 149
L I+ + G VIL HN
Sbjct: 124 DINQLLEVIKGLIDLGNTVILIEHN 148
Score = 50.8 bits (122), Expect = 2e-07
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPP--LIFLDEPTSGMDPG 511
L +++ L LG +++ TLSGG +++ A L PP L LDEP++G+
Sbjct: 68 LQFLIDVGLGYLTLG----QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ 123
Query: 512 ARRFLWTCIERAVSEGRCVILTSHN 536
L I+ + G VIL HN
Sbjct: 124 DINQLLEVIKGLIDLGNTVILIEHN 148
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 51.5 bits (124), Expect = 3e-07
Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 13/191 (6%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRDSMDL 416
K + ++ V +GE ++G NG+GK+T K + G + + TSG + +
Sbjct: 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD 72
Query: 417 VRSYIG------YCPQFDALNDRLTPREHLEFYSRVRNVPSVLL---NTIVNESLNKFAL 467
R+ G Y + +++ R L R + L ++ L +
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM 132
Query: 468 -GHYSDREVRT-LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
+ +R V SGG K++ L P L LDE SG+D A + + I R
Sbjct: 133 DEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE 192
Query: 526 EGRCVILTSHN 536
R ++ +H
Sbjct: 193 PDRSFLIITHY 203
Score = 41.9 bits (99), Expect = 4e-04
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 83 YSDREVRT-LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 141
+ +R V SGG K++ L P L LDE SG+D A + + I R R
Sbjct: 136 FLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDR 195
Query: 142 CVILTSHN 149
++ +H
Sbjct: 196 SFLIITHY 203
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 53.0 bits (127), Expect = 3e-07
Identities = 52/235 (22%), Positives = 92/235 (39%), Gaps = 20/235 (8%)
Query: 309 FTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKP-AVNQISF 367
+ P + D+V S D + +K + +G++ A+ I
Sbjct: 309 ERFNEPEPELELSDADNVLLLAHD-----KSVDSIELKDVHMNPKAPEGSEGFALGPIDL 363
Query: 368 GVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-----AYVMNHSIRDSMDLVRSYIG 422
+ +G+ ++G NG GK+T K+ G P G A V S D DL +
Sbjct: 364 RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFA 423
Query: 423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGN 482
F +D + P E + + N L + K G +S LS G
Sbjct: 424 ---DFHLFDDLIGPDEGEH--ASLDNA-QQYLQRLEIADKVKIEDGGFS--TTTALSTGQ 475
Query: 483 KRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSHN 536
+++L+ A L + P++ DE + DP +RF + + +G+ +I+ SH+
Sbjct: 476 QKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD 530
Score = 34.9 bits (80), Expect = 0.10
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSHN 149
LS G +++L+ A L + P++ DE + DP +RF + + +G+ +I+ SH+
Sbjct: 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD 530
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 52.8 bits (128), Expect = 3e-07
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN---------AYVMNHSIRDSMD 415
SF + G G++G NGAGK+T FKM+TG +P SG AYV RD++D
Sbjct: 344 SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS--RDALD 400
Score = 49.3 bits (119), Expect = 3e-06
Identities = 46/173 (26%), Positives = 67/173 (38%), Gaps = 53/173 (30%)
Query: 376 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLT 435
G+LGLNGAGK+T +++ G K G A I+ +GY PQ L+ T
Sbjct: 37 GVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-GIK---------VGYLPQEPQLDPEKT 86
Query: 436 PREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-----------------------GHYSD 472
RE++E V V + L NE +A D
Sbjct: 87 VRENVE--EGVAEVKAAL--DRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLD 142
Query: 473 RE----------------VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
+ V LSGG +R+++ LL P ++ LDEPT+ +D
Sbjct: 143 SQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
Score = 36.6 bits (86), Expect = 0.038
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
D +V LSGG +R+++ LL P ++ LDEPT+ +D
Sbjct: 158 DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
Score = 29.3 bits (67), Expect = 6.9
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 88 VRTLSGGNKRKLSTAIALL--GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE--GRCV 143
V LSGG + +L A L GN ++ LDEPT+ +D R L E A+ E G C
Sbjct: 443 VGVLSGGERNRLHLAKTLKQGGN--VLLLDEPTNDLDVETLRAL----EEALLEFPG-CA 495
Query: 144 ILTSH 148
++ SH
Sbjct: 496 VVISH 500
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 52.0 bits (124), Expect = 4e-07
Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFK---MLTGAIKPTS--GNAYVMNHSIRD 412
TK ++ ++ + R + +G +G GK+T + L I+ TS G Y + + R
Sbjct: 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153
Query: 413 ----SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPS-------VLLNTIVNES 461
S++L R+ IG Q + TP E + + V P +L IV +S
Sbjct: 154 KKISSLEL-RTRIGMVFQ------KPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKS 205
Query: 462 LNKFALGHYS----DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
L AL D+ LSGG +++L A A+ P ++ +DEPTS +DP A
Sbjct: 206 LKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIAT---- 261
Query: 518 TCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNG 553
IE + E + +I+ +H+M + + + + G
Sbjct: 262 AKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQG 300
Score = 48.2 bits (114), Expect = 5e-06
Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 42/205 (20%)
Query: 1 MGLTTTPKRVVTLLLTT------QKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLE 54
+G T K++ +L L T QK +I N + Y P+ + +NDR
Sbjct: 147 LGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDN---VAYGPRNNGINDR-------- 195
Query: 55 FYSRVRNVPSVLLNTIVNESLNKFALGHYS----DREVRTLSGGNKRKLSTAIALLGNPP 110
+L IV +SL AL D+ LSGG +++L A A+ P
Sbjct: 196 ----------KILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPE 245
Query: 111 LIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 167
++ +DEPTS +DP A IE + E + +I+ +H+M + + + + G
Sbjct: 246 VLLMDEPTSALDPIAT----AKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGW 301
Query: 168 FTCLGSAT----HLKSKSMALPVSG 188
G H K+K +SG
Sbjct: 302 IEEAGETKTIFIHPKNKRTKDYISG 326
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 52.4 bits (126), Expect = 5e-07
Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 53/225 (23%)
Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL- 416
+ ++ ++ + GE G++G +G+GK+T K+L P G V D +DL
Sbjct: 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLV------DGVDLA 522
Query: 417 ------VRSYIGYCPQFDAL-------NDRLT----PREH----------LEFYSRVRNV 449
+R +G Q + L N L P EH +F S +
Sbjct: 523 IADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQG 582
Query: 450 PSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
NT V E K A LSGG +++++ A AL+GNP ++ DE TS +D
Sbjct: 583 ----YNTEVGE---KGAN----------LSGGQRQRIAIARALVGNPRILIFDEATSALD 625
Query: 510 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
+ + + R + GR VI+ +H + A C ++ ++ GQ
Sbjct: 626 YESEALIMRNM-REICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQ 668
Score = 47.0 bits (112), Expect = 2e-05
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++++ A AL+GNP ++ DE TS +D + + + R + GR VI+ +H +
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM-REICRGRTVIIIAHRL 652
Query: 151 EECEALCTKLTIMVNGQ 167
A C ++ ++ GQ
Sbjct: 653 STVRA-CDRIIVLEKGQ 668
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 52.3 bits (126), Expect = 5e-07
Identities = 46/166 (27%), Positives = 66/166 (39%), Gaps = 36/166 (21%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
K V S V RG+ L+G NG GKTT K++ G ++ SG I L
Sbjct: 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSG-------RIHCGTKL 382
Query: 417 VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP----SVLLNTIVNESLNKFALGHYSD 472
+Y FD L P + + N+ V++N + LG+ D
Sbjct: 383 EVAY------FDQHRAELDPEKTVM-----DNLAEGKQEVMVNGR-----PRHVLGYLQD 426
Query: 473 ---------REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
V+ LSGG + +L A L L+ LDEPT+ +D
Sbjct: 427 FLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
Score = 46.5 bits (111), Expect = 3e-05
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 26/167 (15%)
Query: 367 FGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI---------RDSMDLV 417
+ E L+G NGAGK+T K+L G + G I R+ V
Sbjct: 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTV 83
Query: 418 RSYI--------GYCPQFDALNDRL--TPRE-HLEFYSRVRNVPSVL----LNTIVNESL 462
++ Y ++ ++ + P E +L ++++ L +NE L
Sbjct: 84 YDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVL 143
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
+ LG D + +LSGG RK + AL+ NP ++ LDEPT+ +D
Sbjct: 144 AQ--LGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
Score = 40.7 bits (96), Expect = 0.002
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 67 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
L +NE L + LG D + +LSGG RK + AL+ NP ++ LDEPT+ +D
Sbjct: 135 LENRINEVLAQ--LGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
Score = 34.5 bits (80), Expect = 0.14
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 88 VRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
V+ LSGG + +L A L L+ LDEPT+ +D
Sbjct: 438 VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 50.8 bits (121), Expect = 5e-07
Identities = 48/199 (24%), Positives = 91/199 (45%), Gaps = 24/199 (12%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTT---TFKMLTGAIKPTSGNAYVMNHSIRDS 413
G K A+ I+ + + + L+G +G GK+T F + I G + +++
Sbjct: 13 GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ 72
Query: 414 MDLV--RSYIGYCPQ-----FDALNDRLT--PREHLEFYSRVRNVPSVLLNTIVNESLNK 464
D+V R +G Q ++ + ++ P+ H ++N +V + L K
Sbjct: 73 -DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLH----GMIKNKDEE--EALVVDCLQK 125
Query: 465 FALGHYSDREVR----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 520
L +++ LSGG +++L A AL P L+ LDEPTS +DP + + +
Sbjct: 126 VGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185
Query: 521 ERAVSEGRCVILTSHNMEE 539
+ +S +I+ +HNM++
Sbjct: 186 -KELSHNLSMIMVTHNMQQ 203
Score = 47.7 bits (113), Expect = 5e-06
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++L A AL P L+ LDEPTS +DP + + + + +S +I+ +HNM
Sbjct: 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL-KELSHNLSMIMVTHNM 201
Query: 151 EE 152
++
Sbjct: 202 QQ 203
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 51.9 bits (125), Expect = 6e-07
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 30/188 (15%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-RDSMDLVRS 419
+V I+ + RGE L+G NG+GK+T +LTG +P SG + + + + R
Sbjct: 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRK 397
Query: 420 YIGYCPQFDA------LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGH---Y 470
F A L D+L E +V + L + + H
Sbjct: 398 ------LFSAVFTDFHLFDQLLGPEGKP-----------ANPALVEKWLERLKMAHKLEL 440
Query: 471 SDREVRT--LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-G 527
D + LS G K++L+ +AL ++ LDE + DP RR + + + E G
Sbjct: 441 EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMG 500
Query: 528 RCVILTSH 535
+ + SH
Sbjct: 501 KTIFAISH 508
Score = 30.3 bits (69), Expect = 2.9
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH 148
LS G K++L+ +AL ++ LDE + DP RR + + + E G+ + SH
Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISH 508
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 50.3 bits (120), Expect = 7e-07
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 6/186 (3%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI----RD 412
G + A+ ++F + GE L G +GAGK+T K++ G +P++G + H I
Sbjct: 13 GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNR 72
Query: 413 SMDLVRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS 471
+ +R IG Q L DR T +++ + + V+ +L+K L +
Sbjct: 73 EVPFLRRQIGMIFQDHHLLMDR-TVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA 131
Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 531
LSGG ++++ A A++ P ++ DEPT +D + E G V+
Sbjct: 132 KNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVL 191
Query: 532 LTSHNM 537
+ +H++
Sbjct: 192 MATHDI 197
Score = 33.7 bits (77), Expect = 0.17
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG ++++ A A++ P ++ DEPT +D + E G V++ +H++
Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI 197
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 51.6 bits (124), Expect = 8e-07
Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 67/246 (27%)
Query: 322 EEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLN 381
E+D+ ++ ER + GD+ + + Y + PA+ I+F + G+ L+G +
Sbjct: 327 EKDEGKRVIERAK-----GDI-EFRNVTFTYPGKE--VPALRNINFKIPAGKTVALVGRS 378
Query: 382 GAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-------------------DLVRSYIG 422
G+GK+T +LT G + H +RD D + + I
Sbjct: 379 GSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIA 438
Query: 423 YCPQFDALNDRLTPREHLE----------FYSRVRNVPSVLLNTIVNESLNKFALGHYSD 472
Y A ++ + RE +E F +++ N L+T++ E+ G
Sbjct: 439 Y-----ARTEQYS-REQIEEAARMAYAMDFINKMDNG----LDTVIGEN------G---- 478
Query: 473 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE---GRC 529
LSGG +++++ A ALL + P++ LDE TS +D + R I+ A+ E R
Sbjct: 479 ---VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER----AIQAALDELQKNRT 531
Query: 530 VILTSH 535
++ +H
Sbjct: 532 SLVIAH 537
Score = 38.8 bits (91), Expect = 0.008
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE---GRCVILTS 147
LSGG +++++ A ALL + P++ LDE TS +D + R I+ A+ E R ++ +
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESER----AIQAALDELQKNRTSLVIA 536
Query: 148 H 148
H
Sbjct: 537 H 537
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 50.7 bits (122), Expect = 9e-07
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 32/191 (16%)
Query: 342 VLVVKRLFKIYANSKG------TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 395
+L L K Y +G A++ +SF + RG+ ++G +G GK+T ++LT
Sbjct: 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI 64
Query: 396 IKPTSGNAYVMNHSI----RDSMDLVRSYIGYCPQ--FDALNDRLTPREHLEFYSRVRNV 449
PT G Y + ++ L+R I Q + +LN R + LE
Sbjct: 65 ETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILE-------- 116
Query: 450 PSVLLNTI---------VNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIALLGNPPL 498
+L+NT + K L HY DR SGG +++++ A AL+ +P +
Sbjct: 117 EPLLINTSLSAAERREKALAMMAKVGLRPEHY-DRYPHMFSGGQRQRIAIARALMLDPDV 175
Query: 499 IFLDEPTSGMD 509
+ DEP S +D
Sbjct: 176 VVADEPVSALD 186
Score = 34.2 bits (79), Expect = 0.18
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 82 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
HY DR SGG +++++ A AL+ +P ++ DEP S +D
Sbjct: 147 HY-DRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 49.9 bits (120), Expect = 1e-06
Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 16/182 (8%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD----SMDLVRSY 420
+S V GE L+G NGAGK+T + G + P SG+ + + R+Y
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 421 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 480
+ Q P + + + + +NE L R V LSG
Sbjct: 74 L--SQQQTPPF--AMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSG 129
Query: 481 GNKRKLSTAIALL-----GNP--PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 533
G +++ A +L NP L+ LDEP + +D + L + +G V+++
Sbjct: 130 GEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMS 189
Query: 534 SH 535
SH
Sbjct: 190 SH 191
Score = 36.1 bits (84), Expect = 0.032
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 69 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-----GNP--PLIFLDEPTSGM 121
+ +NE L R V LSGG +++ A +L NP L+ LDEP + +
Sbjct: 105 SALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSL 164
Query: 122 DPGARRFLWTCIERAVSEGRCVILTSH 148
D + L + +G V+++SH
Sbjct: 165 DVAQQAALDRLLSELCQQGIAVVMSSH 191
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 50.1 bits (120), Expect = 1e-06
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 31/204 (15%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT---GAIKPTSGNAYVMNHSI--- 410
G K A+ I + + L+G +G+GK+T + L I ++ I
Sbjct: 31 GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90
Query: 411 RDSMDL--VRSYIGYCPQFDALNDRLTP-----REHLEFYSRVRNVP-SVLLNTIVNESL 462
R +++ +R +IG Q R P E++ F V +L+ IV SL
Sbjct: 91 RKEINVYEMRKHIGMVFQ------RPNPFAKSIYENITFALERAGVKDKKVLDEIVETSL 144
Query: 463 NKFALGHYS----DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
+ AL + TLSGG +++L A A+ P ++ +DEP S +DP +
Sbjct: 145 KQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPIST----M 200
Query: 519 CIERAVSEGR---CVILTSHNMEE 539
+E + E + +I+ +HNM++
Sbjct: 201 QLEETMFELKKNYTIIIVTHNMQQ 224
Score = 44.7 bits (106), Expect = 5e-05
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 16/85 (18%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
V + L+K AL TLSGG +++L A A+ P ++ +DEP S +DP +
Sbjct: 153 VKDDLHKSAL---------TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPIST---- 199
Query: 131 TCIERAVSEGR---CVILTSHNMEE 152
+E + E + +I+ +HNM++
Sbjct: 200 MQLEETMFELKKNYTIIIVTHNMQQ 224
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 50.2 bits (120), Expect = 1e-06
Identities = 64/268 (23%), Positives = 105/268 (39%), Gaps = 57/268 (21%)
Query: 310 TRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGV 369
+ V + E D + E ++ D L V+ L Y G A+ +S +
Sbjct: 13 SDGTDPEVETTSGESDEQTRDEWTDYEFDGDAKLSVEDLDVYY----GDDHALKGVSMDI 68
Query: 370 GRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-----------------D 412
L+G +G GK+T + L MN I+ D
Sbjct: 69 PEKSVTALIGPSGCGKSTFLRCLNR-----------MNDRIKAARIDGSVELDGQDIYQD 117
Query: 413 SMDLV--RSYIGYC-------PQFDALNDRLTPREHLEFYSRVRNVPSVLL--------N 455
++LV R +G P+ N PR+H + + + LL +
Sbjct: 118 GVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDIN---TGLLARLLGRDDKDAED 174
Query: 456 TIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 511
+V SL + AL +DR LSGG +++L A L +P +I +DEP S +DP
Sbjct: 175 ELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPI 234
Query: 512 ARRFLWTCIERAVSEGRCVILTSHNMEE 539
A + IE ++E V++ +HNM++
Sbjct: 235 ATSKIEDLIEE-LAEEYTVVVVTHNMQQ 261
Score = 48.7 bits (116), Expect = 3e-06
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
VN+ L+ ALG LSGG +++L A L +P +I +DEP S +DP A +
Sbjct: 190 VNDRLDDNALG---------LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE 240
Query: 131 TCIERAVSEGRCVILTSHNMEE 152
IE ++E V++ +HNM++
Sbjct: 241 DLIEE-LAEEYTVVVVTHNMQQ 261
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 50.0 bits (119), Expect = 1e-06
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD--SM 414
G ++ + G ++G NG GK+T + L+ + P G+ ++ I+ S
Sbjct: 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASK 77
Query: 415 DLVRSYIGYCPQFDALNDRLTPRE--------HLEFYSRVRNVPSVLLNTIVNESLNKFA 466
++ R IG Q +T +E H ++R R V +++
Sbjct: 78 EVARR-IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDE----EAVTKAMQATG 132
Query: 467 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
+ H +D+ V TLSGG +++ A+ L ++ LDEPT+ +D
Sbjct: 133 ITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
Score = 36.9 bits (85), Expect = 0.017
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
V +++ + H +D+ V TLSGG +++ A+ L ++ LDEPT+ +D
Sbjct: 124 VTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 49.6 bits (118), Expect = 1e-06
Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 26/201 (12%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G K A+ +S + + L+G +G GK+T + L N + N I + +
Sbjct: 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM------NDLIKNCRIEGKVSI 76
Query: 417 VRSYIGYCPQFDALNDR--------------LTPREHLEFYSRVRNVPSVLLNTIVNESL 462
I Y P D + R ++ +++ + R+ L+ +V +L
Sbjct: 77 EGEDI-YEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENAL 135
Query: 463 NKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
AL SDR +LSGG +++L A L P +I DEPTS +DP + +
Sbjct: 136 RSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIED 195
Query: 519 CIERAVSEGRCVILTSHNMEE 539
I + VI+T HNM++
Sbjct: 196 LIMNLKKDYTIVIVT-HNMQQ 215
Score = 42.3 bits (99), Expect = 4e-04
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 51 EHLEFYSRVRNVPSVLLNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALL 106
+++ + R+ L+ +V +L AL SDR +LSGG +++L A L
Sbjct: 111 DNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA 170
Query: 107 GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEE 152
P +I DEPTS +DP + + I + VI+T HNM++
Sbjct: 171 VKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVT-HNMQQ 215
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 50.1 bits (120), Expect = 1e-06
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 83 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 142
Y R LSGG KR+++ A L P + DEPT+G+DP + + + +G+
Sbjct: 158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKT 217
Query: 143 VILTSHNMEECEAL-CTKLTIMV-NGQ 167
+IL +H+++ L TK TI +G+
Sbjct: 218 IILVTHDLD--NVLEWTKRTIFFKDGK 242
Score = 50.1 bits (120), Expect = 1e-06
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 470 YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
Y R LSGG KR+++ A L P + DEPT+G+DP + + + +G+
Sbjct: 158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKT 217
Query: 530 VILTSHNMEECEAL-CTKLTIMV-NGQ 554
+IL +H+++ L TK TI +G+
Sbjct: 218 IILVTHDLD--NVLEWTKRTIFFKDGK 242
Score = 35.4 bits (82), Expect = 0.059
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 345 VKRLFKIYANSKGTKP----AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 400
VK + KI+ N K P A++ +S + +GE ++G G+GKTT + L + P +
Sbjct: 5 VKNIVKIF-NKK--LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 401 G 401
G
Sbjct: 62 G 62
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 49.3 bits (118), Expect = 2e-06
Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 36/207 (17%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML-----TGAIKPTSGNAYVMNHSIR 411
G K A+ + + +G +G GK+T + L T +G + I
Sbjct: 30 GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89
Query: 412 D-SMDLV--RSYIGYCPQ---------FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
D +D+V R+ +G Q ++ N PR H S+ L+ IV
Sbjct: 90 DPRLDVVELRARVGMVFQKPNPFPKSIYE--NVAYGPRIHGLARSKAE------LDEIVE 141
Query: 460 ESLNKFAL-GHYSDR--EVRT-LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
SL K L DR E T LSGG +++L A A+ +P +I +DEP S +DP A
Sbjct: 142 TSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIAT-- 199
Query: 516 LWTCIERAVSEGR---CVILTSHNMEE 539
+E + E R +++ +H+M++
Sbjct: 200 --AKVEELIDELRQNYTIVIVTHSMQQ 224
Score = 45.1 bits (107), Expect = 4e-05
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 67 LNTIVNESLNKFAL-GHYSDR--EVRT-LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
L+ IV SL K L DR E T LSGG +++L A A+ +P +I +DEP S +D
Sbjct: 136 LDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
Query: 123 PGARRFLWTCIERAVSEGR---CVILTSHNMEE 152
P A +E + E R +++ +H+M++
Sbjct: 196 PIAT----AKVEELIDELRQNYTIVIVTHSMQQ 224
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 49.4 bits (118), Expect = 2e-06
Identities = 47/199 (23%), Positives = 77/199 (38%), Gaps = 30/199 (15%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLT-------GAIKPTSGNAYVMN------- 407
++ ++F V GE L+G +G+GK+T ++L G I+ Y M
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75
Query: 408 -------HSIRDSMDLVRSYIGYCPQFDAL-NDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
+R+ + +V P L N P V +
Sbjct: 76 PADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAP-------VLVLGMARAEAEKRAM 128
Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
E L+ L +D LSGG +++++ A AL P ++ DE TS +DP +
Sbjct: 129 ELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNV 188
Query: 520 IERAVSEGR-CVILTSHNM 537
I R SE ++L +H M
Sbjct: 189 IRRLASEHDLTMLLVTHEM 207
Score = 40.6 bits (95), Expect = 0.001
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 132
E L+ L +D LSGG +++++ A AL P ++ DE TS +DP +
Sbjct: 129 ELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNV 188
Query: 133 IERAVSEGR-CVILTSHNM 150
I R SE ++L +H M
Sbjct: 189 IRRLASEHDLTMLLVTHEM 207
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 49.2 bits (117), Expect = 2e-06
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 25/201 (12%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML------------TGAIKPTSGNAY 404
G K A+N I+ + + L+G +G GK+T + L G + N Y
Sbjct: 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74
Query: 405 VMNHSIRDSMDLVRSYIGYCPQFDALND-RLTPREHLEFYSRVRNVP-SVLLNTIVNESL 462
+ + + +R +G F N ++ +++ + R+ + L+ IV +L
Sbjct: 75 DKDVDVVE----LRKRVGMV--FQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWAL 128
Query: 463 NKFALGHYSDREVR----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
K AL +++ LSGG +++L A + P +I +DEPTS +DP + +
Sbjct: 129 KKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIED 188
Query: 519 CIERAVSEGRCVILTSHNMEE 539
+ E VI+T HNM++
Sbjct: 189 LMVELKKEYTIVIVT-HNMQQ 208
Score = 44.9 bits (106), Expect = 4e-05
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 67 LNTIVNESLNKFALGHYSDREVR----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
L+ IV +L K AL +++ LSGG +++L A + P +I +DEPTS +D
Sbjct: 120 LDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEE 152
P + + + E VI+T HNM++
Sbjct: 180 PISTLKIEDLMVELKKEYTIVIVT-HNMQQ 208
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 48.9 bits (116), Expect = 2e-06
Identities = 49/203 (24%), Positives = 81/203 (39%), Gaps = 28/203 (13%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G AV +S ++G +G GK+T + + + +A V + D D+
Sbjct: 15 GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSIN-RMHDLVPSARVTGKILLDDTDI 73
Query: 417 ---------VRSYIGYCPQFDALNDRLTPREHLEFYSRV-------RNVPSVLLNTIVNE 460
+R +G Q + P + Y V V + IV
Sbjct: 74 YDRGVDPVSIRRRVGMVFQ------KPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVES 127
Query: 461 SLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
SL + AL DR LSGG +++L A + P +I +DEP S +DP + +
Sbjct: 128 SLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKI 187
Query: 517 WTCIERAVSEGRCVILTSHNMEE 539
IE + E +I+ +HNM++
Sbjct: 188 EELIEE-LKEKYTIIIVTHNMQQ 209
Score = 45.4 bits (107), Expect = 3e-05
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 70 IVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 125
IV SL + AL DR LSGG +++L A + P +I +DEP S +DP +
Sbjct: 124 IVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIS 183
Query: 126 RRFLWTCIERAVSEGRCVILTSHNMEE 152
+ IE + E +I+ +HNM++
Sbjct: 184 TLKIEELIEE-LKEKYTIIIVTHNMQQ 209
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 48.9 bits (117), Expect = 2e-06
Identities = 61/238 (25%), Positives = 95/238 (39%), Gaps = 38/238 (15%)
Query: 343 LVVKRLFKIYANS-----KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
L V L YA+ + +N +S + GE LLG +G GK+T ++L G
Sbjct: 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES 63
Query: 398 PTSGNAYVMNHSI----RDSMDLVRSYIGYCPQ--FDALNDRLTPRE-------HLEFYS 444
P+ GN + R R I Q A+N R T RE HL
Sbjct: 64 PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLD 123
Query: 445 ---RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL 501
R+ +L +++S+ D+ LSGG +++ A AL P L+ L
Sbjct: 124 KAERLARASEMLRAVDLDDSV--------LDKRPPQLSGGQLQRVCLARALAVEPKLLIL 175
Query: 502 DEPTSGMDPGARRFLWTCIERAVSE-----GRCVILTSHNMEECEALCTKLTIMVNGQ 554
DE S +D L + R + + G + +H++ E C ++ +M NGQ
Sbjct: 176 DEAVSNLD----LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQ 229
Score = 32.4 bits (74), Expect = 0.50
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE----- 139
D+ LSGG +++ A AL P L+ LDE S +D L + R + +
Sbjct: 146 DKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD----LVLQAGVIRLLKKLQQQF 201
Query: 140 GRCVILTSHNMEECEALCTKLTIMVNGQ 167
G + +H++ E C ++ +M NGQ
Sbjct: 202 GTACLFITHDLRLVERFCQRVMVMDNGQ 229
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 50.0 bits (120), Expect = 2e-06
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 34/169 (20%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL--V 417
++ +S + GE ++G +G+GK+T ++L G P SG+ + + +D+ V
Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDL-AGLDVQAV 525
Query: 418 RSYIGYCPQ---------FD--ALNDRLTPREHLE------FYSRVRNVPSVLLNTIVNE 460
R +G Q F+ A LT E E +R +P + ++T+++E
Sbjct: 526 RRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMP-MGMHTVISE 584
Query: 461 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
TLSGG +++L A AL+ P ++ DE TS +D
Sbjct: 585 GGG-------------TLSGGQRQRLLIARALVRKPRILLFDEATSALD 620
Score = 37.2 bits (87), Expect = 0.021
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
TLSGG +++L A AL+ P ++ DE TS +D
Sbjct: 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALD 620
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 48.2 bits (115), Expect = 3e-06
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD------LVRSYIG 422
V RGE L+G +G+GK+T +L G +SG ++ + MD L ++G
Sbjct: 33 VKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLH-QMDEEARAKLRAKHVG 91
Query: 423 YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGN 482
+ Q L L E++E + +R S L + LG D LSGG
Sbjct: 92 FVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGE 151
Query: 483 KRKLSTAIALLGNPPLIFLDEPTSGMD 509
+++++ A A G P ++F DEPT +D
Sbjct: 152 QQRVALARAFNGRPDVLFADEPTGNLD 178
Score = 35.5 bits (82), Expect = 0.042
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
L + LG D LSGG +++++ A A G P ++F DEPT +D
Sbjct: 129 ALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 48.5 bits (116), Expect = 3e-06
Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 35/221 (15%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
G A+ +I+ + + L+G +G GK+T + L N + + I + L
Sbjct: 14 GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRM------NDLIPSVKIEGEVLL 67
Query: 417 VRSYIGYCPQFDALNDR--------------LTPREHLEFYSRVRNVPS-VLLNTIVNES 461
I Y D R ++ +++ + R + L+ IV +S
Sbjct: 68 DGQDI-YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKS 126
Query: 462 LNKFAL-GHYSDREVRT---LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
L AL DR ++ LSGG +++L A AL P ++ +DEPTS +DP +
Sbjct: 127 LKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDP-----IS 181
Query: 518 TC-IERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 554
T IE + E + +++ +HNM++ + K +NG+
Sbjct: 182 TLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGE 222
Score = 47.4 bits (113), Expect = 7e-06
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 13/109 (11%)
Query: 67 LNTIVNESLNKFAL-GHYSDREVRT---LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
L+ IV +SL AL DR ++ LSGG +++L A AL P ++ +DEPTS +D
Sbjct: 119 LDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
Query: 123 PGARRFLWTC-IERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQ 167
P + T IE + E + +++ +HNM++ + K +NG+
Sbjct: 179 P-----ISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGE 222
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 49.3 bits (118), Expect = 3e-06
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 1/149 (0%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC 424
I+ + GE +G +G GK+T +M+ G TSG+ ++ + D R +G
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG-VGMV 80
Query: 425 PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 484
Q AL L+ E++ F ++ +N VN+ L H DR+ + LSGG ++
Sbjct: 81 FQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQ 140
Query: 485 KLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
+++ L+ P + LDEP S +D R
Sbjct: 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALR 169
Score = 38.1 bits (89), Expect = 0.010
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 54 EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIF 113
E RV V VL L H DR+ + LSGG +++++ L+ P +
Sbjct: 109 EINQRVNQVAEVL------------QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 156
Query: 114 LDEPTSGMDPGAR 126
LDEP S +D R
Sbjct: 157 LDEPLSNLDAALR 169
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 48.5 bits (115), Expect = 3e-06
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 51 EHLEFYSRVRNVPS-VLLNTIVNESLNKFAL-GHYSDRE---VRTLSGGNKRKLSTAIAL 105
E++ + R+R V +L V +L AL DR LSGG +++L A AL
Sbjct: 117 ENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARAL 176
Query: 106 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTI 162
+P ++ DEPTS +DP A IE +S+ + +++ +HNM++ +
Sbjct: 177 ATDPEILLFDEPTSALDPIAT----ASIEELISDLKNKVTILIVTHNMQQAARVSDYTAY 232
Query: 163 MVNGQFTCLGS 173
M G+ G+
Sbjct: 233 MYMGELIEFGA 243
Score = 48.5 bits (115), Expect = 3e-06
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 438 EHLEFYSRVRNVPS-VLLNTIVNESLNKFAL-GHYSDRE---VRTLSGGNKRKLSTAIAL 492
E++ + R+R V +L V +L AL DR LSGG +++L A AL
Sbjct: 117 ENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARAL 176
Query: 493 LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTI 549
+P ++ DEPTS +DP A IE +S+ + +++ +HNM++ +
Sbjct: 177 ATDPEILLFDEPTSALDPIAT----ASIEELISDLKNKVTILIVTHNMQQAARVSDYTAY 232
Query: 550 MVNGQFTCLGS 560
M G+ G+
Sbjct: 233 MYMGELIEFGA 243
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 48.2 bits (115), Expect = 3e-06
Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 31/231 (13%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML--------- 392
+L V L Y K A+N +S E L+G +G+GK+T + +
Sbjct: 5 ILQVSDLSVYY----NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPE 60
Query: 393 ---TGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALND-RLTPREHLEFYSRVRN 448
TG+I N Y D++DL R IG F N ++ E++ + R++
Sbjct: 61 VTITGSIVYNGHNIYSPR---TDTVDL-RKEIGMV--FQQPNPFPMSIYENVVYGLRLKG 114
Query: 449 VP-SVLLNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDE 503
+ +L+ V +SL ++ DR LSGG ++++ A L +P +I LDE
Sbjct: 115 IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDE 174
Query: 504 PTSGMDP-GARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 553
PTS +DP A + T + + + ++L + +M++ + + ++G
Sbjct: 175 PTSALDPISAGKIEETLLG--LKDDYTMLLVTRSMQQASRISDRTGFFLDG 223
Score = 42.1 bits (99), Expect = 4e-04
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVILTSHN 149
LSGG ++++ A L +P +I LDEPTS +DP A + T + + + ++L + +
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG--LKDDYTMLLVTRS 206
Query: 150 MEECEALCTKLTIMVNG 166
M++ + + ++G
Sbjct: 207 MQQASRISDRTGFFLDG 223
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 48.3 bits (115), Expect = 4e-06
Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 27/216 (12%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK-----PTSGNAYVMNHSIR 411
G A+ I+ + E ++G +G GK+T K L ++ T+G + +I
Sbjct: 35 GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF 94
Query: 412 D---SMDLVRSYIGYC-----PQFDALNDRLT--PREHLEFYSRVRNVPSVLLNTIVNES 461
D S++ +R+ +G P ++ D +T P+ H +++ L+ IV +S
Sbjct: 95 DKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIH-----GIKD--KKTLDEIVEKS 147
Query: 462 LNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
L A+ DR LSGG +++L A L P +I +DEPTS +DP + +
Sbjct: 148 LRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVE 207
Query: 518 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 553
++ + + +I+ +HNM++ + K +NG
Sbjct: 208 ELVQE-LKKDYSIIIVTHNMQQAARISDKTAFFLNG 242
Score = 46.4 bits (110), Expect = 2e-05
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 66 LLNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 121
L+ IV +SL A+ DR LSGG +++L A L P +I +DEPTS +
Sbjct: 139 TLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSAL 198
Query: 122 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNG 166
DP + + ++ + + +I+ +HNM++ + K +NG
Sbjct: 199 DPISTLKVEELVQE-LKKDYSIIIVTHNMQQAARISDKTAFFLNG 242
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 46.6 bits (111), Expect = 5e-06
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 91 LSGGNKRKLSTAIAL----LGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVIL 145
LSGG K + A+ L L PL LDE G+DP + +E V +G VI+
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLV-KGAQVIV 136
Query: 146 TSHNME 151
+H E
Sbjct: 137 ITHLPE 142
Score = 46.6 bits (111), Expect = 5e-06
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 478 LSGGNKRKLSTAIAL----LGNPPLIFLDEPTSGMDP-GARRFLWTCIERAVSEGRCVIL 532
LSGG K + A+ L L PL LDE G+DP + +E V +G VI+
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLV-KGAQVIV 136
Query: 533 TSHNME 538
+H E
Sbjct: 137 ITHLPE 142
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 47.7 bits (113), Expect = 5e-06
Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 35/222 (15%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML------------TGAIKPTSGNAY 404
G A+ I + E L+G +G GK+T + L TG + N Y
Sbjct: 16 GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY 75
Query: 405 VMNHSIRDSMDLVRSYIGYCPQFDALND-RLTPREHLEFYSRVRNVPS-VLLNTIVNESL 462
N D + L R +G F N + E++ + R+ V +L+ V SL
Sbjct: 76 APN---EDVVQL-RKQVGMV--FQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSL 129
Query: 463 NKFALGHYSD------REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
+ A+ + + +LSGG ++++ A L P +I LDEPTS +DP +
Sbjct: 130 KQAAI--WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS--- 184
Query: 517 WTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQF 555
T IE + E R +IL +H+M + + K + G
Sbjct: 185 -TQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNL 225
Score = 46.1 bits (109), Expect = 2e-05
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILT 146
+LSGG ++++ A L P +I LDEPTS +DP + T IE + E R +IL
Sbjct: 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISS----TQIENMLLELRDQYTIILV 203
Query: 147 SHNMEECEALCTKLTIMVNGQF 168
+H+M + + K + G
Sbjct: 204 THSMHQASRISDKTAFFLTGNL 225
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 48.4 bits (115), Expect = 8e-06
Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 40/200 (20%)
Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 413
+SK +KP ++ I+ + G ++G G GKT+ + G + S
Sbjct: 625 DSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH-----------AETS 673
Query: 414 MDLVRSYIGYCPQ----FDALNDRLTPREHLEF--------YSRVRNVPSVLLNTIVNES 461
++R + Y PQ F+A T RE++ F Y R +V T +
Sbjct: 674 SVVIRGSVAYVPQVSWIFNA-----TVRENILFGSDFESERYWRAIDV------TALQHD 722
Query: 462 LNKFA---LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLW 517
L+ L +R V +SGG K+++S A A+ N + D+P S +D A +
Sbjct: 723 LDLLPGRDLTEIGERGV-NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFD 781
Query: 518 TCIERAVSEGRCVILTSHNM 537
+C++ + +G+ +L ++ +
Sbjct: 782 SCMKDEL-KGKTRVLVTNQL 800
Score = 35.0 bits (80), Expect = 0.13
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 10/160 (6%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-RDSMD 415
G P ++ +SF V E G++G GAGK++ L ++ G + + + + +
Sbjct: 1247 GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLT 1306
Query: 416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP--SVLLNTIVNESLNKFALGHYSDR 473
+R + PQ L T R +++ +S + L + + +++ G D
Sbjct: 1307 DLRRVLSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFG--LDA 1363
Query: 474 EV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
EV S G ++ LS A ALL ++ LDE T+ +D
Sbjct: 1364 EVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVD 1403
Score = 31.9 bits (72), Expect = 1.2
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWTCIERAVSEGRCVILTSHN 149
+SGG K+++S A A+ N + D+P S +D A + +C++ + +G+ +L ++
Sbjct: 741 ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQ 799
Query: 150 M 150
+
Sbjct: 800 L 800
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 47.9 bits (114), Expect = 1e-05
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 15/146 (10%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC 424
++FG+ ++G NG GK+T K+++G ++P+SG + R + VR +
Sbjct: 528 LNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF------RSAK--VRMAVFSQ 579
Query: 425 PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-GHYSDREVRTLSGGNK 483
D L+ P ++ +R P V + L F + G+ + + + TLSGG K
Sbjct: 580 HHVDGLDLSSNPLLYM-----MRCFPGVPEQKL-RAHLGSFGVTGNLALQPMYTLSGGQK 633
Query: 484 RKLSTAIALLGNPPLIFLDEPTSGMD 509
+++ A P ++ LDEP++ +D
Sbjct: 634 SRVAFAKITFKKPHILLLDEPSNHLD 659
Score = 39.1 bits (91), Expect = 0.007
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
+ +T SGG + +++ A AL P L+ LDEPT+ +D A +L T + + + I+
Sbjct: 340 KATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL---LKWPKTFIV 396
Query: 146 TSHNMEECEALCTKLTIMVNGQ 167
SH E + T + + ++GQ
Sbjct: 397 VSHAREFLNTVVTDI-LHLHGQ 417
Score = 39.1 bits (91), Expect = 0.007
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 473 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 532
+ +T SGG + +++ A AL P L+ LDEPT+ +D A +L T + + + I+
Sbjct: 340 KATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL---LKWPKTFIV 396
Query: 533 TSHNMEECEALCTKLTIMVNGQ 554
SH E + T + + ++GQ
Sbjct: 397 VSHAREFLNTVVTDI-LHLHGQ 417
Score = 32.5 bits (74), Expect = 0.61
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
TLSGG K +++ A P ++ LDEP++ +D
Sbjct: 627 TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
Score = 30.6 bits (69), Expect = 2.4
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 333 VEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFK-M 391
V H + G + + ++ S G + + S + G +GL+G NG GKTT + M
Sbjct: 164 VNHDGNGGGPAIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYM 223
Query: 392 LTGAI 396
AI
Sbjct: 224 AMHAI 228
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 47.8 bits (114), Expect = 1e-05
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 45/229 (19%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN--------HSI 410
P + ++F + GE L+G +G+GK+T +L +PT G + H +
Sbjct: 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL 553
Query: 411 RDSMDLV-----------RSYIGY----CPQFDALNDRLTPREHLEFYSRVRNVPSVLLN 455
+ LV R I Y P + + H +F N +
Sbjct: 554 HRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAH-DFIMEFPNG----YD 608
Query: 456 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
T V E ++ LSGG K++++ A AL+ P ++ LDE TS +D +
Sbjct: 609 TEVGEKGSQ-------------LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQL 655
Query: 516 LWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
L RA R V+L +H + E ++ ++ G +G+ L
Sbjct: 656 LQESRSRA---SRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQL 700
Score = 42.8 bits (101), Expect = 4e-04
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG K++++ A AL+ P ++ LDE TS +D + L RA R V+L +H +
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRA---SRTVLLIAHRL 674
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHL 177
E ++ ++ G +G+ L
Sbjct: 675 STVER-ADQILVLKKGSVVEMGTHKQL 700
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 46.5 bits (111), Expect = 1e-05
Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 38/208 (18%)
Query: 366 SFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCP 425
V RGE +LG +GAGK+T ++ G + P SG+ + + D + P
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL------NGQDHTTTPPSRRP 72
Query: 426 -----QFDALNDRLTPREHLEFYSRVRNV-----PSVLLNTIVNESLNKFA----LGHYS 471
Q + L LT + N+ P + LN E L+ A +
Sbjct: 73 VSMLFQENNLFSHLTVAQ---------NIGLGLNPGLKLNAAQREKLHAIARQMGIEDLL 123
Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-----CIERAVSE 526
R LSGG +++++ A L+ P++ LDEP S +DP R+ + T C ER ++
Sbjct: 124 ARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLT- 182
Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQ 554
+++ SH++E+ + + ++ +G+
Sbjct: 183 ---LLMVSHSLEDAARIAPRSLVVADGR 207
Score = 39.2 bits (92), Expect = 0.003
Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 9/82 (10%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-----CIERAVSEGRCVIL 145
LSGG +++++ A L+ P++ LDEP S +DP R+ + T C ER ++ +++
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLT----LLM 185
Query: 146 TSHNMEECEALCTKLTIMVNGQ 167
SH++E+ + + ++ +G+
Sbjct: 186 VSHSLEDAARIAPRSLVVADGR 207
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 46.5 bits (110), Expect = 1e-05
Identities = 50/199 (25%), Positives = 91/199 (45%), Gaps = 31/199 (15%)
Query: 377 LLGLNGAGKTTTFKMLT--GAIKPT---SGNAYVMNHSIRD-SMDLV--RSYIGYCPQ-- 426
L+G +G GK+T + L + P G+ Y+ I D ++D+V R +G Q
Sbjct: 34 LIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93
Query: 427 -------FD--ALNDRLTPREHLEFYSRV--RNVPSVLLNTIVNESLNKFALGHYSDREV 475
FD A R+ + +F ++ + L V + L+K ALG
Sbjct: 94 NPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALG------- 146
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
LSGG +++L A + +P +I +DEP S +DP + + I + + E +++ +H
Sbjct: 147 --LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK-LKEDYTIVIVTH 203
Query: 536 NMEECEALCTKLTIMVNGQ 554
NM++ + + +NG+
Sbjct: 204 NMQQATRVSKYTSFFLNGE 222
Score = 45.3 bits (107), Expect = 3e-05
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
V + L+K ALG LSGG +++L A + +P +I +DEP S +DP + +
Sbjct: 136 VKDKLDKSALG---------LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIE 186
Query: 131 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
I + + E +++ +HNM++ + + +NG+
Sbjct: 187 DLIHK-LKEDYTIVIVTHNMQQATRVSKYTSFFLNGE 222
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 46.2 bits (110), Expect = 2e-05
Identities = 48/204 (23%), Positives = 79/204 (38%), Gaps = 37/204 (18%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG--AIKPTSGNAYVMNHSIRDSM 414
+ ++ + +GE ++G NG+GK+T K++ G A K G+ SI D
Sbjct: 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE 77
Query: 415 DLVRSYIGYCPQFD----------------ALNDR-----LTPREHLEFYSRVRNVPSVL 453
R+++G F A N + L + LEF
Sbjct: 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL---------- 127
Query: 454 LNTIVNESLNKFALG-HYSDREVRT-LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 511
I+NE L + + R V SGG K++ L + L LDE SG+D
Sbjct: 128 --EIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDID 185
Query: 512 ARRFLWTCIERAVSEGRCVILTSH 535
A + + I + ++ +IL +H
Sbjct: 186 ALKIIAEGINKLMTSENSIILITH 209
Score = 32.3 bits (74), Expect = 0.55
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 69 TIVNESLNKFALG-HYSDREVRT-LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 126
I+NE L + + R V SGG K++ L + L LDE SG+D A
Sbjct: 128 EIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDAL 187
Query: 127 RFLWTCIERAVSEGRCVILTSH 148
+ + I + ++ +IL +H
Sbjct: 188 KIIAEGINKLMTSENSIILITH 209
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 45.7 bits (109), Expect = 2e-05
Identities = 49/202 (24%), Positives = 74/202 (36%), Gaps = 31/202 (15%)
Query: 365 ISF-GVGRGECFGLLGLNGAGKTTTFKMLTGAI--KPTSGNAYVMNHSIRDSMDLVRSYI 421
I F G+ F + G GAGK+T +T A+ K S+ +
Sbjct: 20 IDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGE------ 73
Query: 422 GYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD---REVRTL 478
D T + + Y RV + + L G + R V TL
Sbjct: 74 ------DTAEVSFTFQLGGKKY-RVERSRGLDYDQFTRIVL--LPQGEFDRFLARPVSTL 124
Query: 479 SGGNKRKLSTAIAL--------LGNPPL--IFLDEPTSGMDPGARRFLWTCIERAVSEGR 528
SGG S ++AL G L +F+DE +DP A + T +E +E R
Sbjct: 125 SGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENR 184
Query: 529 CVILTSHNMEECEALCTKLTIM 550
V + SH E E + +L ++
Sbjct: 185 MVGVISHVEELKERIPQRLEVI 206
Score = 40.3 bits (95), Expect = 0.001
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 86 REVRTLSGGNKRKLSTAIAL--------LGNPPL--IFLDEPTSGMDPGARRFLWTCIER 135
R V TLSGG S ++AL G L +F+DE +DP A + T +E
Sbjct: 119 RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALEL 178
Query: 136 AVSEGRCVILTSHNMEECEALCTKLTIM 163
+E R V + SH E E + +L ++
Sbjct: 179 IRTENRMVGVISHVEELKERIPQRLEVI 206
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 46.4 bits (110), Expect = 2e-05
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 67 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
L+ IV +SL L DR LSGG +++L A A+ P ++ +DEP S +D
Sbjct: 122 LDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALD 181
Query: 123 PGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
P A IE + E + +I+ +H+M++ + + ++ +G+ +
Sbjct: 182 PVAT----NVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231
Score = 46.4 bits (110), Expect = 2e-05
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 454 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
L+ IV +SL L DR LSGG +++L A A+ P ++ +DEP S +D
Sbjct: 122 LDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALD 181
Query: 510 PGARRFLWTCIERAVSEGR---CVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
P A IE + E + +I+ +H+M++ + + ++ +G+ +
Sbjct: 182 PVAT----NVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 45.4 bits (108), Expect = 3e-05
Identities = 57/223 (25%), Positives = 99/223 (44%), Gaps = 29/223 (13%)
Query: 340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 399
G L++ + K Y G + +NQ+ + G+ ++G +G GK+T ++L G P+
Sbjct: 10 GTPLLLNAVSKRY----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS 65
Query: 400 SGNAYVMN---HSIRDSMDLVRSYIGYCPQF-DALNDRLTPREHLEFYSRVRNVPSVLLN 455
+G R+ L+ F DA RL P + + NV L
Sbjct: 66 AGELLAGTAPLAEAREDTRLM---------FQDA---RLLP-----WKKVIDNVGLGLKG 108
Query: 456 TIVNESLNKFALGHYSDREVR---TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA 512
+ +L A +DR LSGG K++++ A AL+ P L+ LDEP +D
Sbjct: 109 QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
Query: 513 RRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
R + IE + G V+L +H++ E A+ ++ ++ G+
Sbjct: 169 RIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGK 211
Score = 42.0 bits (99), Expect = 5e-04
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 149
LSGG K++++ A AL+ P L+ LDEP +D R + IE + G V+L +H+
Sbjct: 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
Query: 150 MEECEALCTKLTIMVNGQ 167
+ E A+ ++ ++ G+
Sbjct: 194 VSEAVAMADRVLLIEEGK 211
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 45.4 bits (107), Expect = 4e-05
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 67 LNTIVNESLNKFALGHYSDREVR----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
L+ +V +SL + A+ +++ LSGG +++L A A+ P ++ +DEP S +D
Sbjct: 134 LDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193
Query: 123 P-GARRFLWTCIERAVSEGRCVILTSHNMEE 152
P R+ C+E + E +I+ +HNM++
Sbjct: 194 PISTRQVEELCLE--LKEQYTIIMVTHNMQQ 222
Score = 45.4 bits (107), Expect = 4e-05
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 454 LNTIVNESLNKFALGHYSDREVR----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
L+ +V +SL + A+ +++ LSGG +++L A A+ P ++ +DEP S +D
Sbjct: 134 LDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193
Query: 510 P-GARRFLWTCIERAVSEGRCVILTSHNMEE 539
P R+ C+E + E +I+ +HNM++
Sbjct: 194 PISTRQVEELCLE--LKEQYTIIMVTHNMQQ 222
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 45.4 bits (107), Expect = 4e-05
Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 37/207 (17%)
Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT------GAIKPTSGNAYVMNHSI- 410
T+ + +S + + + ++G +G GK+T K L ++ G N +I
Sbjct: 19 TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR-VEGRVEFFNQNIY 77
Query: 411 --RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNV----------PSVLLNTIV 458
R +++ +R + + P+ +L S NV P + ++ IV
Sbjct: 78 ERRVNLNRLRRQVSM----------VHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIV 127
Query: 459 NESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
+L L H + LSGG +++L A AL P ++ +DEP G+DP A
Sbjct: 128 ESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASM 187
Query: 515 FLWTCIE--RAVSEGRCVILTSHNMEE 539
+ + I+ R SE VI++ HN+ +
Sbjct: 188 KVESLIQSLRLRSELTMVIVS-HNLHQ 213
Score = 44.3 bits (104), Expect = 8e-05
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 63 PSVLLNTIVNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 118
P + ++ IV +L L H + LSGG +++L A AL P ++ +DEP
Sbjct: 119 PKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178
Query: 119 SGMDPGARRFLWTCIE--RAVSEGRCVILTSHNMEE 152
G+DP A + + I+ R SE VI++ HN+ +
Sbjct: 179 FGLDPIASMKVESLIQSLRLRSELTMVIVS-HNLHQ 213
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 45.5 bits (108), Expect = 4e-05
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 35/171 (20%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD----SMDL 416
AV+ ++ + GE G++G +G GK+T + + G +K T G + +
Sbjct: 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRA 95
Query: 417 VRSYIGYCPQ--FDALNDRLTP----REHLEFY----------SRVRNVPSV--LLNTIV 458
VRS I Q +LN R+T E L Y RV+ + LL ++
Sbjct: 96 VRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI 155
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
N ++F SGG +++ A AL+ P LI DEP S +D
Sbjct: 156 NRYPHEF-------------SGGQCQRIGIARALILEPKLIICDEPVSALD 193
Score = 30.8 bits (70), Expect = 1.7
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 92 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
SGG +++ A AL+ P LI DEP S +D
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALD 193
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 43.5 bits (102), Expect = 4e-05
Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 53/175 (30%)
Query: 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDAL 430
GE ++G G+GKTT + L + P G ++ L +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQ------------ 48
Query: 431 NDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAI 490
L + + SG + +L+ A+
Sbjct: 49 -----------------------------------LLLIIVGGKKASGSGELRLRLALAL 73
Query: 491 ALLGNPPLIFLDEPTSGMDPGARR------FLWTCIERAVSEGRCVILTSHNMEE 539
A P ++ LDE TS +D L + + VILT+++ ++
Sbjct: 74 ARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Score = 37.0 bits (85), Expect = 0.007
Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 56 YSRVRNVPSVLLNT-IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL 114
+ ++ + E + L + + SG + +L+ A+A P ++ L
Sbjct: 25 ELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLIL 84
Query: 115 DEPTSGMDPGARR------FLWTCIERAVSEGRCVILTSHNMEE 152
DE TS +D L + + VILT+++ ++
Sbjct: 85 DEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 45.6 bits (108), Expect = 6e-05
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 335 HGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394
D+ DVL V+ L + + AV +SF + RGE ++G +G+GK+ T L
Sbjct: 5 DELDARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMR 64
Query: 395 AIKPTSGNA 403
++ G
Sbjct: 65 LLEQAGGLV 73
Score = 42.1 bits (99), Expect = 6e-04
Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 17/212 (8%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD----SMDL 416
AV ++SF + GE L+G +G+GK+TT + L ++ G I +
Sbjct: 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQA 398
Query: 417 VRSYIGYCPQ--FDALNDRLTPREHLEFYSRVRNVPSVLLN-----TIVNESLNKFAL-G 468
+R I + Q + +L+ R T + + RV LL V L + L
Sbjct: 399 LRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG----LLPGKAAAARVAWLLERVGLLP 454
Query: 469 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEG 527
++ R SGG ++++ A AL NP +I DE S +D R + + ++ G
Sbjct: 455 EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG 514
Query: 528 RCVILTSHNMEECEALCTKLTIMVNGQFTCLG 559
+ SH+M E + ++ +M GQ +G
Sbjct: 515 IAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
Score = 35.6 bits (82), Expect = 0.083
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 18/125 (14%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI---ERAVSEGRCVILTS 147
LSGG ++++ A+AL P ++ DEPT+ +D + + I ++ +S G VI +
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMG--VIFIT 226
Query: 148 HNMEECEALCTKLTIMVNGQFTCLGSA-------THLKSKSM--ALP----VSGNDLGRG 194
H+M + ++ +M G+ GS H ++++ A+P + G D R
Sbjct: 227 HDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRR 286
Query: 195 DPVRS 199
P+ S
Sbjct: 287 FPLIS 291
Score = 35.2 bits (81), Expect = 0.085
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 92 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVILTSHNM 150
SGG ++++ A AL NP +I DE S +D R + + ++ G + SH+M
Sbjct: 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM 524
Query: 151 EECEALCTKLTIMVNGQFTCLG-------SATHLKSKSM--ALPVSGNDLGRGDPVRSEL 201
E + ++ +M GQ +G + H ++ + A+PV+ D R P R L
Sbjct: 525 AVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMAAVPVA--DPSRQRPQRVLL 582
Query: 202 S 202
S
Sbjct: 583 S 583
Score = 34.4 bits (79), Expect = 0.19
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI---ERAVSEGRCVILTS 534
LSGG ++++ A+AL P ++ DEPT+ +D + + I ++ +S G VI +
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMG--VIFIT 226
Query: 535 HNMEECEALCTKLTIMVNGQFTCLGS 560
H+M + ++ +M G+ GS
Sbjct: 227 HDMGVVAEIADRVLVMYQGEAVETGS 252
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 44.6 bits (106), Expect = 7e-05
Identities = 52/226 (23%), Positives = 85/226 (37%), Gaps = 75/226 (33%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML------------TGAIKPTSGNAY 404
G K A+ IS + + +G +G GK+T + G I+ N Y
Sbjct: 36 GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95
Query: 405 VMNHSIRDSMDLV--RSYIG------------------YCPQFDALNDRLTPREHLEFYS 444
+D+ R +G Y + +N+R
Sbjct: 96 ------DKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNR----------- 138
Query: 445 RVRNVPSVLLNTIVNESLNKFALGHYSDREVR--------TLSGGNKRKLSTAIALLGNP 496
RV L+ V SL AL EV+ LSGG +++L A A+ P
Sbjct: 139 RV-------LDEAVERSLRGAALWD----EVKDRLHENAFGLSGGQQQRLVIARAIAIEP 187
Query: 497 PLIFLDEPTSGMDPGARRFLWTCIERAVSEGR---CVILTSHNMEE 539
++ LDEPTS +DP + IE ++E + +++ +HNM++
Sbjct: 188 EVLLLDEPTSALDPIST----LKIEELITELKSKYTIVIVTHNMQQ 229
Score = 44.2 bits (105), Expect = 9e-05
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 19/97 (19%)
Query: 67 LNTIVNESLNKFALGHYSDREVR--------TLSGGNKRKLSTAIALLGNPPLIFLDEPT 118
L+ V SL AL EV+ LSGG +++L A A+ P ++ LDEPT
Sbjct: 141 LDEAVERSLRGAALWD----EVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT 196
Query: 119 SGMDPGARRFLWTCIERAVSEGR---CVILTSHNMEE 152
S +DP + IE ++E + +++ +HNM++
Sbjct: 197 SALDPIST----LKIEELITELKSKYTIVIVTHNMQQ 229
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 45.5 bits (108), Expect = 7e-05
Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 33/193 (17%)
Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS 413
+SK +P ++ I+ V G ++G G GKT+ + G + P S + V
Sbjct: 625 DSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV-------- 676
Query: 414 MDLVRSYIGYCPQ----FDALNDRLTPREHLEF--------YSRVRNVPSVLLNTIVNES 461
+R + Y PQ F+A T R+++ F Y R +V ++ + +
Sbjct: 677 ---IRGTVAYVPQVSWIFNA-----TVRDNILFGSPFDPERYERAIDVTALQHDL---DL 725
Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWTCI 520
L L +R V +SGG K+++S A A+ N + D+P S +D R+ CI
Sbjct: 726 LPGGDLTEIGERGV-NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCI 784
Query: 521 ERAVSEGRCVILT 533
+ + V++T
Sbjct: 785 KDELRGKTRVLVT 797
Score = 35.5 bits (82), Expect = 0.090
Identities = 48/173 (27%), Positives = 72/173 (41%), Gaps = 38/173 (21%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDS--MDLV 417
P ++ +SF + E G++G GAGK++ L ++ G + I MDL
Sbjct: 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDL- 1311
Query: 418 RSYIGYCPQ---------------FDALND----RLTPREHLEFYSRVRNVPSVLLNTIV 458
R +G PQ F+ ND R HL+ R RN S+ L+ V
Sbjct: 1312 RKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIR-RN--SLGLDAEV 1368
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 511
+E+ F++G R L LS A ALL ++ LDE T+ +D
Sbjct: 1369 SEAGENFSVGQ------RQL-------LSLARALLRRSKILVLDEATAAVDVR 1408
Score = 31.6 bits (72), Expect = 1.4
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG-ARRFLWTCIERAVSEGRCVILT 146
+SGG K+++S A A+ N + D+P S +D R+ CI+ + V++T
Sbjct: 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVT 797
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 45.2 bits (108), Expect = 7e-05
Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 16/205 (7%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
K ++F + G+ L+G +GAGKT+ L G + P G+ + +R+ +
Sbjct: 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESW 421
Query: 418 R---SYIGYCPQFDA--LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HY- 470
R S++G PQ L D + +++ L N V+E L G
Sbjct: 422 RKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQA---LENAWVSEFLPLLPQGLDTP 478
Query: 471 -SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
D+ LS G ++L+ A ALL L+ LDEPT+ +D + + + + A S +
Sbjct: 479 IGDQAAG-LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA-SRRQT 536
Query: 530 VILTSHNMEECEALCTKLTIMVNGQ 554
++ +H +E+ ++ +M +GQ
Sbjct: 537 TLMVTHQLEDLAQ-WDQIWVMQDGQ 560
Score = 40.2 bits (95), Expect = 0.003
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 64 SVLLNTIVNESLNKFALG-HY--SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 120
L N V+E L G D+ LS G ++L+ A ALL L+ LDEPT+
Sbjct: 457 QALENAWVSEFLPLLPQGLDTPIGDQAAG-LSVGQAQRLALARALLQPCQLLLLDEPTAS 515
Query: 121 MDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
+D + + + + A S + ++ +H +E+ ++ +M +GQ
Sbjct: 516 LDAHSEQLVMQALNAA-SRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQ 560
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 44.1 bits (104), Expect = 8e-05
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 67 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
L+ +V SL AL DR LSGG +++L A + P +I +DEPTS +D
Sbjct: 118 LDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALD 177
Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 168
P A + +E VI+T H+M++ + + + G+
Sbjct: 178 PIATHKIEELMEELKKNYTIVIVT-HSMQQARRISDRTAFFLMGEL 222
Score = 44.1 bits (104), Expect = 8e-05
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 454 LNTIVNESLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
L+ +V SL AL DR LSGG +++L A + P +I +DEPTS +D
Sbjct: 118 LDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALD 177
Query: 510 PGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 555
P A + +E VI+T H+M++ + + + G+
Sbjct: 178 PIATHKIEELMEELKKNYTIVIVT-HSMQQARRISDRTAFFLMGEL 222
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 42.5 bits (101), Expect = 1e-04
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 129
LSGG +++L+ A LL P +FLDE TS +D + L
Sbjct: 90 DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL 130
Score = 42.5 bits (101), Expect = 1e-04
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
LSGG +++L+ A LL P +FLDE TS +D + L
Sbjct: 90 DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL 130
Score = 31.4 bits (72), Expect = 0.65
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394
+ +SF + G+ + G +G GK++ F+ L G
Sbjct: 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG 49
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 43.6 bits (103), Expect = 1e-04
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 41/209 (19%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG-----AIKPTSGNAYVMNHSIR 411
G A++ IS + + L+G +G GK+T + L G + +I
Sbjct: 17 GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76
Query: 412 DS-MDLV--RSYIG------------------YCPQFDALNDRLTPREHLEFYSRVRNVP 450
D +D+V R +G Y + + + D+ E +E R++
Sbjct: 77 DPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVE-----RSLR 131
Query: 451 SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 510
L V + L++ ALG LSGG +++L A AL P ++ +DEP S +DP
Sbjct: 132 HAALWDEVKDRLHESALG---------LSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182
Query: 511 GARRFLWTCIERAVSEGRCVILTSHNMEE 539
A + + I + +I+ +HNM++
Sbjct: 183 IATQKIEELIHE-LKARYTIIIVTHNMQQ 210
Score = 42.8 bits (101), Expect = 2e-04
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
V + L++ ALG LSGG +++L A AL P ++ +DEP S +DP A + +
Sbjct: 139 VKDRLHESALG---------LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIE 189
Query: 131 TCIERAVSEGRCVILTSHNMEE 152
I + +I+ +HNM++
Sbjct: 190 ELIHE-LKARYTIIIVTHNMQQ 210
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 44.3 bits (105), Expect = 2e-04
Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 32/196 (16%)
Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDL 416
PA+ ++F + G+ G+ G G+GK+T ++ + G+ + + +D
Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS 386
Query: 417 VRSYIGYCPQ----FD-------ALNDRLTPREHLEFYSRVRNVPSVLLN------TIVN 459
RS + Q F AL ++ +E +R+ +V +L T V
Sbjct: 387 WRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVG 446
Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
E R V LSGG K+++S A ALL N ++ LD+ S +D +
Sbjct: 447 E------------RGV-MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN 493
Query: 520 IERAVSEGRCVILTSH 535
+ R EGR VI+++H
Sbjct: 494 L-RQWGEGRTVIISAH 508
Score = 34.3 bits (79), Expect = 0.18
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
LSGG K+++S A ALL N ++ LD+ S +D + + R EGR VI+++H
Sbjct: 452 LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNL-RQWGEGRTVIISAH 508
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 43.1 bits (101), Expect = 2e-04
Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 25/204 (12%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTT---TFKMLTGAIKPT--SGNAYVMNHSIRDS-- 413
A+ IS + +G +G GK+T F + I T G + +I D
Sbjct: 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77
Query: 414 -MDLVRSYIGYCPQFDALNDRLTP-----REHLEFYSRVRNVP-SVLLNTIVNESLNKFA 466
+D +R +G Q R P E++ + RV V + + V E+L A
Sbjct: 78 QVDELRKNVGMVFQ------RPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAA 131
Query: 467 LGHYSDREVR----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
L +++ LSGG +++L A A+ +P ++ +DEP S +DP + + I
Sbjct: 132 LWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 523 AVSEGRCVILTSHNMEECEALCTK 546
+ VI+T HNM++ + K
Sbjct: 192 LKKDYTIVIVT-HNMQQAARVSDK 214
Score = 43.1 bits (101), Expect = 2e-04
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++L A A+ +P ++ +DEP S +DP + + I + VI+T HNM
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVT-HNM 205
Query: 151 EECEALCTK 159
++ + K
Sbjct: 206 QQAARVSDK 214
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 43.1 bits (102), Expect = 2e-04
Identities = 51/216 (23%), Positives = 87/216 (40%), Gaps = 33/216 (15%)
Query: 358 TKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP----TSGN----------A 403
+P V+ +S + RG L+G +G+GK+ T G + T+G
Sbjct: 15 AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC 74
Query: 404 YVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 463
+ I M RS A N T H P+ + + +L
Sbjct: 75 ALRGRKIATIMQNPRS---------AFNPLHTMHTHARETCLALGKPAD--DATLTAALE 123
Query: 464 KFALGHYSDREVRT----LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWT 518
L + + R ++ +SGG +++ A+ALL P I DEPT+ +D A+ R L
Sbjct: 124 AVGLEN-AARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL-D 181
Query: 519 CIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNG 553
+E V + ++L +H+M L + +M +G
Sbjct: 182 LLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHG 217
Score = 40.8 bits (96), Expect = 9e-04
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSE-GRCVILTSH 148
+SGG +++ A+ALL P I DEPT+ +D A+ R L +E V + ++L +H
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL-DLLESIVQKRALGMLLVTH 199
Query: 149 NMEECEALCTKLTIMVNG 166
+M L + +M +G
Sbjct: 200 DMGVVARLADDVAVMSHG 217
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 42.7 bits (100), Expect = 3e-04
Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 54/230 (23%)
Query: 340 GDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPT 399
+++ +L KI+ G AV + + E G +G +G GK+T + L
Sbjct: 5 APIVMDCKLDKIFY---GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNR----- 56
Query: 400 SGNAYVMNHSIRDSMDLVRSY-----IGYCPQ--FDALNDRLTPREHLEFYSRVRN--VP 450
MN DLV+ + + + Q + D + R ++ + N
Sbjct: 57 ------MN-------DLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSM 103
Query: 451 SVLLNTIVNESLNKFALGHYSDR------------EVR--------TLSGGNKRKLSTAI 490
S+ N LN++ G DR EV+ +LSGG +++L A
Sbjct: 104 SIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIAR 162
Query: 491 ALLGNPPLIFLDEPTSGMDPGA-RRFLWTCIERAVSEGRCVILTSHNMEE 539
A+ P ++ LDEP S +DP A RR +E + + + L +HNM++
Sbjct: 163 AIATEPEVLLLDEPCSALDPIATRRVEELMVE--LKKDYTIALVTHNMQQ 210
Score = 42.3 bits (99), Expect = 3e-04
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGA-RRFLWTCIERAVSEGRCVILTSH 148
+LSGG +++L A A+ P ++ LDEP S +DP A RR +E + + + L +H
Sbjct: 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVE--LKKDYTIALVTH 206
Query: 149 NMEE 152
NM++
Sbjct: 207 NMQQ 210
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 42.9 bits (101), Expect = 3e-04
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA-VSEGRCVILTSHN 149
L+ G +K+ AIAL P L+ DEPT+ M+P + ++ + R + ++L SH+
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 150 MEECEALCTKLTIMVNGQ 167
++ K+ ++ GQ
Sbjct: 219 LQMISQWADKINVLYCGQ 236
Score = 42.9 bits (101), Expect = 3e-04
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA-VSEGRCVILTSHN 536
L+ G +K+ AIAL P L+ DEPT+ M+P + ++ + R + ++L SH+
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 537 MEECEALCTKLTIMVNGQ 554
++ K+ ++ GQ
Sbjct: 219 LQMISQWADKINVLYCGQ 236
Score = 31.7 bits (72), Expect = 0.92
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
S+G AV+++S + GE GL+G +G+GK+ K + G K
Sbjct: 16 SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK 58
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 42.0 bits (98), Expect = 4e-04
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 31/185 (16%)
Query: 376 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLT 435
++G +G GK+T + L SG A + + D+ ++ Y P D +N L
Sbjct: 34 AIIGPSGCGKSTLLRALNRMNDIVSG-ARLEGAVLLDNENI------YSPNLDVVN--LR 84
Query: 436 PREHLEF----------YSRVRNVPSVL-------LNTIVNESLNKFALGHYSDREVR-- 476
R + F + V P +L L+ +V +SL + AL +
Sbjct: 85 KRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKS 144
Query: 477 --TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTS 534
LSGG +++L A L P +I +DEP S +DP + + ++ + + + + +
Sbjct: 145 GLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE-LKQNYTIAIVT 203
Query: 535 HNMEE 539
HNM++
Sbjct: 204 HNMQQ 208
Score = 40.4 bits (94), Expect = 0.001
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 67 LNTIVNESLNKFALGHYSDREVR----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
L+ +V +SL + AL + LSGG +++L A L P +I +DEP S +D
Sbjct: 120 LDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179
Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEE 152
P + + ++ + + + + +HNM++
Sbjct: 180 PVSTMRIEELMQE-LKQNYTIAIVTHNMQQ 208
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 42.1 bits (99), Expect = 4e-04
Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 26/174 (14%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTT---TFKMLT--GAIKPTSGNAYVMNHSI- 410
G+ + + + + F L+G +G GK+T TF L G + +I
Sbjct: 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIY 74
Query: 411 RDSMDL--VRSYIGYCPQFDALNDRLTPREHLEFYSRVR--------NVPSVLLNTIVNE 460
+D VR +G Q+ P HL Y V L+ V
Sbjct: 75 SPDVDPIEVRREVGMVFQYP------NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEW 128
Query: 461 SLNKFAL-GHYSDR---EVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 510
+L K AL DR LSGG +++L A AL P ++ +DEPT+ +DP
Sbjct: 129 ALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDP 182
Score = 37.9 bits (88), Expect = 0.008
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 123
LSGG +++L A AL P ++ +DEPT+ +DP
Sbjct: 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDP 182
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 42.6 bits (101), Expect = 5e-04
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 21/165 (12%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
P + S + G+ L+G +G+GK+T K++ G +P SG + +++
Sbjct: 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551
Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL--------LNTIVNESLNKFALGH 469
+ + Q D T R++L + ++ + I + G
Sbjct: 552 ANSVAMVDQ-DIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRP------GG 604
Query: 470 YSDREV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 510
Y D E+ LSGG +++L A AL+ NP ++ LDE TS +DP
Sbjct: 605 Y-DAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDP 648
Score = 39.9 bits (94), Expect = 0.003
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 123
LSGG +++L A AL+ NP ++ LDE TS +DP
Sbjct: 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDP 648
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 41.7 bits (98), Expect = 5e-04
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTT---TFKMLTGAIKP--TSGNAYVMNHSIR 411
G+ AV + + + + +G +G GK+T F L I G ++
Sbjct: 21 GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLY 80
Query: 412 DS-MD--LVRSYIGYCPQFDALNDRLTP-----REHLEFYSRVRNVPSVLLNTIVNESLN 463
+D VR IG Q + P +++ + +R+ N ++ +V SL
Sbjct: 81 APDVDPVEVRRRIGMVFQ------KPNPFPKSIYDNIAYGARI-NGYKGDMDELVERSLR 133
Query: 464 KFALGHYSDREVRT----LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
+ AL +++ LSGG +++L A A+ P +I +DEP S +DP + +
Sbjct: 134 QAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEEL 193
Query: 520 IERAVSEGRCVILTSHNMEE 539
+ + +I+T HNM++
Sbjct: 194 MHELKEQYTIIIVT-HNMQQ 212
Score = 40.5 bits (95), Expect = 0.001
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 67 LNTIVNESLNKFALGHYSDREVRT----LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
++ +V SL + AL +++ LSGG +++L A A+ P +I +DEP S +D
Sbjct: 124 MDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
Query: 123 PGARRFLWTCIERAVSEGRCVILTSHNMEE 152
P + + + + +I+T HNM++
Sbjct: 184 PISTLRIEELMHELKEQYTIIIVT-HNMQQ 212
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 41.7 bits (98), Expect = 6e-04
Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 35/228 (15%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR-DS 413
S G AV+++S + GE GL+G +G+GK+ K + G T N V +R D
Sbjct: 16 SDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV---TKDNWRVTADRMRFDD 72
Query: 414 MDLV-------RSYIGYCPQ--FDALNDRLTPREHLE---------------FYSRV--R 447
+DL+ R +G+ F L P E + ++ R R
Sbjct: 73 IDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR 132
Query: 448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 507
++ L V +K A+ + L+ G +K+ AIAL P L+ DEPT+
Sbjct: 133 KRRAIELLHRVGIKDHKDAMRSFP----YELTEGECQKVMIAIALANQPRLLIADEPTNA 188
Query: 508 MDPGARRFLWTCIERA-VSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
M+P + ++ + R + ++L SH+++ K+ ++ GQ
Sbjct: 189 MEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQ 236
Score = 40.9 bits (96), Expect = 0.001
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA-VSEGRCVILTSHN 149
L+ G +K+ AIAL P L+ DEPT+ M+P + ++ + R + ++L SH+
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218
Query: 150 MEECEALCTKLTIMVNGQFTCLGSATHLKSK-----SMALPVSGNDLGRGDPVRSELS 202
++ K+ ++ GQ + L + + AL + D G P +S L+
Sbjct: 219 LQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQALIRAIPDFGSAMPHKSRLN 276
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 41.7 bits (98), Expect = 6e-04
Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 45/212 (21%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIR--- 411
S GT AV + + RG+ L+G +G GK+T + L N + S++
Sbjct: 22 SYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM------NDLIEGCSLKGRV 75
Query: 412 --DSMDLVRSYIGYCPQFDALNDRLT-----------PR---EHLEFYSRVRNVPSVLLN 455
D DL Y P+ D + R P+ E++ F +R+ N + ++
Sbjct: 76 LFDGTDL------YDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARI-NGYTGDMD 128
Query: 456 TIVNESLNKFALGHYSDREVR----TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 511
+V SL K A+ ++ +LSGG +++L A + P +I +DEP S +DP
Sbjct: 129 ELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDP- 187
Query: 512 ARRFLWTC-IERAVSEGR---CVILTSHNMEE 539
+ T IE + E + +++ +HNM++
Sbjct: 188 ----ISTLKIEETMHELKKNFTIVIVTHNMQQ 215
Score = 37.1 bits (86), Expect = 0.018
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC-IERAVSEGR---CVIL 145
+LSGG +++L A + P +I +DEP S +DP + T IE + E + +++
Sbjct: 154 SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDP-----ISTLKIEETMHELKKNFTIVI 208
Query: 146 TSHNMEE 152
+HNM++
Sbjct: 209 VTHNMQQ 215
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 41.4 bits (98), Expect = 9e-04
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 350 KIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY----V 405
K Y T + I V GE L+G +G GK+T +M+ G + TSG + V
Sbjct: 11 KSYDG--KT-QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRV 67
Query: 406 MNH---SIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
+N + RD I Q AL ++ RE++ + ++R +P + V E+
Sbjct: 68 VNELEPADRD--------IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAA 119
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
L DR+ R LSGG +++++ A++ P + DEP S +D
Sbjct: 120 RILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
Score = 31.0 bits (71), Expect = 1.7
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 42 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 101
AL ++ RE++ + ++R +P + V E+ L DR+ R LSGG +++++
Sbjct: 86 ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAM 145
Query: 102 AIALLGNPPLIFLDEPTSGMD 122
A++ P + DEP S +D
Sbjct: 146 GRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 37.9 bits (89), Expect = 0.001
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 86 REVRTLSGGNKRKL-STAIAL--------LGNPP---LIFLDEPTSGMDPGARRFL 129
R+ TLSGG K+ L A+A P LIFLDE + +D R L
Sbjct: 18 RDSGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSL 73
Score = 37.9 bits (89), Expect = 0.001
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 473 REVRTLSGGNKRKL-STAIAL--------LGNPP---LIFLDEPTSGMDPGARRFL 516
R+ TLSGG K+ L A+A P LIFLDE + +D R L
Sbjct: 18 RDSGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSL 73
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 41.5 bits (97), Expect = 0.001
Identities = 57/255 (22%), Positives = 111/255 (43%), Gaps = 36/255 (14%)
Query: 321 LEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGL 380
LE D + ER ++ G G+ + V +A + P +N I+F + G ++G
Sbjct: 619 LEPDSI--ERRTIKPG--EGNSITVHNATFTWA--RDLPPTLNGITFSIPEGALVAVVGQ 672
Query: 381 NGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDAL-NDRLTPREH 439
G GK++ L + G+ ++ + + Y PQ + ND L RE+
Sbjct: 673 VGCGKSSLLSALLAEMDKVEGHVHM------------KGSVAYVPQQAWIQNDSL--REN 718
Query: 440 LEF--------YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 491
+ F Y +V ++L + + S ++ +G ++ V LSGG K+++S A A
Sbjct: 719 ILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIG---EKGV-NLSGGQKQRVSLARA 774
Query: 492 LLGNPPLIFLDEPTSGMDPGARRFLWTCI--ERAVSEGRCVILTSHNMEECEALCTKLTI 549
+ N + D+P S +D + ++ + V + + IL +H + + + +
Sbjct: 775 VYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV-DVIIV 833
Query: 550 MVNGQFTCLGSATHL 564
M G+ + +GS L
Sbjct: 834 MSGGKISEMGSYQEL 848
Score = 33.0 bits (75), Expect = 0.51
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI--ERAVSEGRCVILTSH 148
LSGG K+++S A A+ N + D+P S +D + ++ + V + + IL +H
Sbjct: 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTH 820
Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHL 177
+ + + +M G+ + +GS L
Sbjct: 821 GISYLPQV-DVIIVMSGGKISEMGSYQEL 848
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 40.4 bits (95), Expect = 0.002
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 11/67 (16%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP--GARRFLWTCIERAVSEGR---CVIL 145
LSGG +++L A + P ++ LDEP S +DP R IE ++E + V++
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGR------IEELITELKQDYTVVI 210
Query: 146 TSHNMEE 152
+HNM++
Sbjct: 211 VTHNMQQ 217
Score = 40.4 bits (95), Expect = 0.002
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 11/67 (16%)
Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP--GARRFLWTCIERAVSEGR---CVIL 532
LSGG +++L A + P ++ LDEP S +DP R IE ++E + V++
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGR------IEELITELKQDYTVVI 210
Query: 533 TSHNMEE 539
+HNM++
Sbjct: 211 VTHNMQQ 217
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 41.2 bits (97), Expect = 0.002
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 85 DREVRTLSGGNKRKLSTAIAL------LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 138
+R + LSGG + L A L GN PL+ LDEPT +D RR L +ER +
Sbjct: 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR 842
Query: 139 EGRCVILTSHNME 151
+ VI+ SH+ E
Sbjct: 843 KIPQVIIVSHDEE 855
Score = 41.2 bits (97), Expect = 0.002
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 472 DREVRTLSGGNKRKLSTAIAL------LGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
+R + LSGG + L A L GN PL+ LDEPT +D RR L +ER +
Sbjct: 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR 842
Query: 526 EGRCVILTSHNME 538
+ VI+ SH+ E
Sbjct: 843 KIPQVIIVSHDEE 855
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 40.2 bits (94), Expect = 0.002
Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 37/219 (16%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ VK L Y ++G + ISF + G+ GLLG G+GK+T + T G+
Sbjct: 3 MTVKDLTAKY--TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 403 AYVMNHSIRDSMDLV--RSYIGYCPQ----FDALNDRLTPREHLEFYSR------VRNVP 450
+ S +S+ L R G PQ F T R++L+ Y + +
Sbjct: 60 IQIDGVSW-NSVPLQKWRKAFGVIPQKVFIFSG-----TFRKNLDPYGKWSDEEIWKVAE 113
Query: 451 SVLLNTIVNESLNK--FAL--GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
V L +++ + + F L G LS G+K+ + A ++L ++ LDEP++
Sbjct: 114 EVGLKSVIEQFPGQLDFVLVDGGC------VLSHGHKQLMCLARSVLSKAKILLLDEPSA 167
Query: 507 GMDPGARRFLWTCIERAVSEGRC-VILTSHNME---ECE 541
+DP + + +++A ++ C VIL+ H +E EC+
Sbjct: 168 HLDPITYQVIRKTLKQAFAD--CTVILSEHRIEAMLECQ 204
Score = 34.4 bits (79), Expect = 0.11
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-VILTSHN 149
LS G+K+ + A ++L ++ LDEP++ +DP + + +++A ++ C VIL+ H
Sbjct: 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFAD--CTVILSEHR 196
Query: 150 ME---ECE 154
+E EC+
Sbjct: 197 IEAMLECQ 204
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 40.8 bits (95), Expect = 0.002
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHN 149
LSGG K+++S A A++ NP ++ LDE TS +D + + I +E R I+ +H
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
Query: 150 M 150
+
Sbjct: 640 L 640
Score = 40.8 bits (95), Expect = 0.002
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHN 536
LSGG K+++S A A++ NP ++ LDE TS +D + + I +E R I+ +H
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
Query: 537 M 537
+
Sbjct: 640 L 640
Score = 39.6 bits (92), Expect = 0.005
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 129
++LSGG K++++ A ALL P ++ LDE TS +D + + +
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLI 1397
Score = 39.6 bits (92), Expect = 0.005
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 476 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
++LSGG K++++ A ALL P ++ LDE TS +D + + +
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLI 1397
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 40.4 bits (95), Expect = 0.003
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 40 FDALNDRLTPREHLEFYSRVRNVPSVL--LNTIVNESLNKFALGHYSDREVRTLSGGNKR 97
D L+ +T E EF+ VPS+ L T+ + L LG + TLSGG +
Sbjct: 786 ADVLD--MTVEEAYEFFE---AVPSISRKLQTLCDVGLGYIRLG----QPATTLSGGEAQ 836
Query: 98 KLSTAIALLG---NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
++ A L L LDEPT+G+ + L ++R V +G V++ HN++
Sbjct: 837 RIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLD 893
Score = 40.4 bits (95), Expect = 0.003
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 427 FDALNDRLTPREHLEFYSRVRNVPSVL--LNTIVNESLNKFALGHYSDREVRTLSGGNKR 484
D L+ +T E EF+ VPS+ L T+ + L LG + TLSGG +
Sbjct: 786 ADVLD--MTVEEAYEFFE---AVPSISRKLQTLCDVGLGYIRLG----QPATTLSGGEAQ 836
Query: 485 KLSTAIALLG---NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
++ A L L LDEPT+G+ + L ++R V +G V++ HN++
Sbjct: 837 RIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLD 893
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 38.5 bits (89), Expect = 0.005
Identities = 41/197 (20%), Positives = 81/197 (41%), Gaps = 26/197 (13%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN-----HSIRDSM 414
++ I+ + G+ ++G G GK++ + G ++ G + N S +
Sbjct: 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATR 74
Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYS--RVRNVPSVLLNTIVNESLNKFALGHYSD 472
R + Y Q L + T E++ F S + +V + ++ G ++
Sbjct: 75 SRNRYSVAYAAQKPWLLNA-TVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTE 133
Query: 473 REVR--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD---------PGARRFLWTCIE 521
R LSGG ++++ A AL N ++FLD+P S +D G +FL
Sbjct: 134 IGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ---- 189
Query: 522 RAVSEGRCVILTSHNME 538
+ R ++L +H ++
Sbjct: 190 ---DDKRTLVLVTHKLQ 203
Score = 35.8 bits (82), Expect = 0.038
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 16/70 (22%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD---------PGARRFLWTCIERAVSEGR 141
LSGG ++++ A AL N ++FLD+P S +D G +FL + R
Sbjct: 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ-------DDKR 193
Query: 142 CVILTSHNME 151
++L +H ++
Sbjct: 194 TLVLVTHKLQ 203
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 38.5 bits (90), Expect = 0.006
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
LSGG +++L A A+ P ++ +DEP S +DP + + I + VI+T HNM
Sbjct: 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVT-HNM 207
Query: 151 EE 152
++
Sbjct: 208 QQ 209
Score = 38.5 bits (90), Expect = 0.006
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 537
LSGG +++L A A+ P ++ +DEP S +DP + + I + VI+T HNM
Sbjct: 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVT-HNM 207
Query: 538 EE 539
++
Sbjct: 208 QQ 209
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 38.4 bits (89), Expect = 0.006
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 123
LSGG +++L A AL P ++ DEPT+ +DP
Sbjct: 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDP 179
Score = 38.4 bits (89), Expect = 0.006
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 510
LSGG +++L A AL P ++ DEPT+ +DP
Sbjct: 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDP 179
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 36.8 bits (86), Expect = 0.017
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 47 LTPREHLEFYSRVRNVPSV--LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 104
+T E LEF+ N+P + L T+ + L LG + TLSGG +++ A
Sbjct: 131 MTVEEALEFFE---NIPKIARKLQTLCDVGLGYIKLG----QPATTLSGGEAQRIKLAKE 183
Query: 105 LL---GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
L L LDEPT+G+ + L ++R V +G V++ HN++
Sbjct: 184 LSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233
Score = 36.8 bits (86), Expect = 0.017
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 434 LTPREHLEFYSRVRNVPSV--LLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIA 491
+T E LEF+ N+P + L T+ + L LG + TLSGG +++ A
Sbjct: 131 MTVEEALEFFE---NIPKIARKLQTLCDVGLGYIKLG----QPATTLSGGEAQRIKLAKE 183
Query: 492 LL---GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
L L LDEPT+G+ + L ++R V +G V++ HN++
Sbjct: 184 LSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 37.9 bits (88), Expect = 0.017
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 86 REVRTLSGGNKRKLSTAIALLG---NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 142
R + +LSGG ++L A LL P L LDEPT+G+ + L ++ +G
Sbjct: 805 RPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHT 864
Query: 143 VILTSHNM 150
V++ HNM
Sbjct: 865 VVIIEHNM 872
Score = 37.9 bits (88), Expect = 0.017
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 473 REVRTLSGGNKRKLSTAIALLG---NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC 529
R + +LSGG ++L A LL P L LDEPT+G+ + L ++ +G
Sbjct: 805 RPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHT 864
Query: 530 VILTSHNM 537
V++ HNM
Sbjct: 865 VVIIEHNM 872
Score = 32.9 bits (75), Expect = 0.58
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLI----FLDEPTSGMDPGARRFLWTCIERAVSEG 140
+R + TLSGG + + TA+A LI LDEP+ G+ P L I++ +G
Sbjct: 471 ERALATLSGGEQER--TALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQG 528
Query: 141 RCVILTSHN 149
V+L H+
Sbjct: 529 NTVLLVEHD 537
Score = 32.9 bits (75), Expect = 0.58
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 472 DREVRTLSGGNKRKLSTAIALLGNPPLI----FLDEPTSGMDPGARRFLWTCIERAVSEG 527
+R + TLSGG + + TA+A LI LDEP+ G+ P L I++ +G
Sbjct: 471 ERALATLSGGEQER--TALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQG 528
Query: 528 RCVILTSHN 536
V+L H+
Sbjct: 529 NTVLLVEHD 537
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 37.1 bits (86), Expect = 0.024
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 28/199 (14%)
Query: 356 KGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK--------PTSGNAYVMN 407
+ + ++ + G+ ++G +GAGKTT +M+ GA K P SG V
Sbjct: 393 VIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452
Query: 408 HSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL 467
+++ + Y P+F +T EH S+ ++ + + E LN+ L
Sbjct: 453 NTVSALIPGE-----YEPEFGE----VTILEH--LRSKTGDLNAAV------EILNRAGL 495
Query: 468 GHYS--DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP-GARRFLWTCIERAV 524
R+ LS G K + A L P ++ +DE + +D A R E A
Sbjct: 496 SDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR 555
Query: 525 SEGRCVILTSHNMEECEAL 543
G +I+ +H E AL
Sbjct: 556 EAGITLIVVTHRPEVGNAL 574
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 36.6 bits (85), Expect = 0.026
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 92 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM 150
SGG ++++ A+ALL P L+ DEPT+ +D + + T + E +I+ +H++
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL 222
Query: 151 EECEALCTKLTIMVNGQFTCLGSATHL 177
+C K+ +M G+ G+A +
Sbjct: 223 GVVAGICDKVLVMYAGRTMEYGNARDV 249
Score = 36.6 bits (85), Expect = 0.026
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 479 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNM 537
SGG ++++ A+ALL P L+ DEPT+ +D + + T + E +I+ +H++
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL 222
Query: 538 EECEALCTKLTIMVNGQFTCLGSATHL 564
+C K+ +M G+ G+A +
Sbjct: 223 GVVAGICDKVLVMYAGRTMEYGNARDV 249
Score = 33.9 bits (78), Expect = 0.20
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 333 VEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML 392
+ +L VK L ++ G AVN ++F + GE G++G +G+GK+ T L
Sbjct: 3 PLAQQQADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFAL 62
Query: 393 TG 394
G
Sbjct: 63 MG 64
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 34.3 bits (79), Expect = 0.16
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVILTSHN 149
LSGG +++ A+A+ P L+ DEPT+ +D + + + +E E ++L +H+
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213
Query: 150 MEECEALCTKLTIMVNGQFTCLGSATHL 177
+ K+ +M GQ G A +
Sbjct: 214 LALVAEAAHKIIVMYAGQVVETGKAHDI 241
Score = 34.3 bits (79), Expect = 0.16
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR-RFLWTCIERAVSEGRCVILTSHN 536
LSGG +++ A+A+ P L+ DEPT+ +D + + + +E E ++L +H+
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213
Query: 537 MEECEALCTKLTIMVNGQFTCLGSATHL 564
+ K+ +M GQ G A +
Sbjct: 214 LALVAEAAHKIIVMYAGQVVETGKAHDI 241
Score = 30.9 bits (70), Expect = 1.9
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI 396
+L V +L + + AV++IS+ V +GE G++G +G+GK+ + + G I
Sbjct: 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI 57
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 34.4 bits (79), Expect = 0.18
Identities = 40/170 (23%), Positives = 63/170 (37%), Gaps = 59/170 (34%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------AYV------MNHSIR 411
+S V RG+ +LG G+GK+T + L + + G AYV MN ++R
Sbjct: 679 VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVR 738
Query: 412 DSM------------DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
++ D VR Q +A + + L I
Sbjct: 739 GNILFFDEEDAARLADAVR-----VSQLEA---------------DLAQLGGGLETEIGE 778
Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
+ +N LSGG K ++S A A+ N + LD+P S +D
Sbjct: 779 KGVN--------------LSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
Score = 30.5 bits (69), Expect = 3.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
LSGG K ++S A A+ N + LD+P S +D
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 34.1 bits (78), Expect = 0.23
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 90 TLSGGNKRKLSTAIA------LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC- 142
+LSGG K ++ A+ L + L+ +DEPT+ +D R L IE ++ +
Sbjct: 801 SLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDI 860
Query: 143 --VILTSHNME 151
VI+ SH+ E
Sbjct: 861 PQVIMISHHRE 871
Score = 34.1 bits (78), Expect = 0.23
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 477 TLSGGNKRKLSTAIA------LLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC- 529
+LSGG K ++ A+ L + L+ +DEPT+ +D R L IE ++ +
Sbjct: 801 SLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDI 860
Query: 530 --VILTSHNME 538
VI+ SH+ E
Sbjct: 861 PQVIMISHHRE 871
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 33.7 bits (78), Expect = 0.33
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 47 LTPREHLEFYSRVRNVPSVL--LNTIVNESLNKFALGHYSDREVRTLSGGN-KR-KLSTA 102
+T E LEF+ +P + L T+V+ L LG + TLSGG +R KL+
Sbjct: 784 MTVEEALEFFE---AIPKIARKLQTLVDVGLGYIKLG----QPATTLSGGEAQRVKLAKE 836
Query: 103 IALLGNPPLIF-LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
++ ++ LDEPT+G+ + L + R V +G VI+ HN++
Sbjct: 837 LSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD 886
Score = 33.7 bits (78), Expect = 0.33
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 434 LTPREHLEFYSRVRNVPSVL--LNTIVNESLNKFALGHYSDREVRTLSGGN-KR-KLSTA 489
+T E LEF+ +P + L T+V+ L LG + TLSGG +R KL+
Sbjct: 784 MTVEEALEFFE---AIPKIARKLQTLVDVGLGYIKLG----QPATTLSGGEAQRVKLAKE 836
Query: 490 IALLGNPPLIF-LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
++ ++ LDEPT+G+ + L + R V +G VI+ HN++
Sbjct: 837 LSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD 886
Score = 29.5 bits (67), Expect = 6.2
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 43 LNDRLTPREHLEFYSRVRNVPSVLLNTIVN--ESLNKFALGHYS-DREVRTLSGGN-KR- 97
+ D L E+L+ + + + +L I L LG+ + R TLSGG +R
Sbjct: 431 IADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRI 490
Query: 98 KLSTAI--ALLGNPPLIFLDEPTSGMDP 123
+L+T I L G L LDEP+ G+
Sbjct: 491 RLATQIGSGLTG--VLYVLDEPSIGLHQ 516
Score = 29.5 bits (67), Expect = 6.2
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 430 LNDRLTPREHLEFYSRVRNVPSVLLNTIVN--ESLNKFALGHYS-DREVRTLSGGN-KR- 484
+ D L E+L+ + + + +L I L LG+ + R TLSGG +R
Sbjct: 431 IADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRI 490
Query: 485 KLSTAI--ALLGNPPLIFLDEPTSGMDP 510
+L+T I L G L LDEP+ G+
Sbjct: 491 RLATQIGSGLTG--VLYVLDEPSIGLHQ 516
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 32.6 bits (75), Expect = 0.42
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 73 ESLNKFALGHYS-DREVRTLSGGNKR--KLSTAI--ALLGNPPLIF-LDEPTSGMDPGAR 126
L LG+ + R TLSGG + +L+T I L G +++ LDEP+ G+ P
Sbjct: 119 GFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTG---VLYVLDEPSIGLHPRDN 175
Query: 127 RFLWTCIERAVSEGRCVILTSHNME 151
L ++R G V++ H+ +
Sbjct: 176 DRLIETLKRLRDLGNTVLVVEHDED 200
Score = 32.6 bits (75), Expect = 0.42
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 460 ESLNKFALGHYS-DREVRTLSGGNKR--KLSTAI--ALLGNPPLIF-LDEPTSGMDPGAR 513
L LG+ + R TLSGG + +L+T I L G +++ LDEP+ G+ P
Sbjct: 119 GFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTG---VLYVLDEPSIGLHPRDN 175
Query: 514 RFLWTCIERAVSEGRCVILTSHNME 538
L ++R G V++ H+ +
Sbjct: 176 DRLIETLKRLRDLGNTVLVVEHDED 200
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 32.5 bits (74), Expect = 0.52
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394
+ +S + G LLG NGAGK+T K L G
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG 49
>gnl|CDD|214940 smart00962, SRP54, SRP54-type protein, GTPase domain. This entry
represents the GTPase domain of the 54 kDa SRP54
component, a GTP-binding protein that interacts with the
signal sequence when it emerges from the ribosome. SRP54
of the signal recognition particle has a three-domain
structure: an N-terminal helical bundle domain, a GTPase
domain, and the M-domain that binds the 7s RNA and also
binds the signal sequence. The extreme C-terminal region
is glycine-rich and lower in complexity and poorly
conserved between species. The GTPase domain is
evolutionary related to P-loop NTPase domains found in a
variety of other proteins.
Length = 197
Score = 31.6 bits (73), Expect = 0.64
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 377 LLGLNGAGKTTT 388
L+G NG GKTTT
Sbjct: 6 LVGPNGVGKTTT 17
>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small
GTPases. Arf (ADP-ribosylation factor)/Arl (Arf-like)
small GTPases. Arf proteins are activators of
phospholipase D isoforms. Unlike Ras proteins they lack
cysteine residues at their C-termini and therefore are
unlikely to be prenylated. Arfs are N-terminally
myristoylated. Members of the Arf family are regulators
of vesicle formation in intracellular traffic that
interact reversibly with membranes of the secretory and
endocytic compartments in a GTP-dependent manner. They
depart from other small GTP-binding proteins by a unique
structural device, interswitch toggle, that implements
front-back communication from N-terminus to the
nucleotide binding site. Arf-like (Arl) proteins are
close relatives of the Arf, but only Arl1 has been shown
to function in membrane traffic like the Arf proteins.
Arl2 has an unrelated function in the folding of native
tubulin, and Arl4 may function in the nucleus. Most
other Arf family proteins are so far relatively poorly
characterized. Thus, despite their significant sequence
homologies, Arf family proteins may regulate unrelated
functions.
Length = 158
Score = 31.4 bits (72), Expect = 0.66
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 377 LLGLNGAGKTTTFKML----TGAIKPTSG 401
+LGL+GAGKTT L PT G
Sbjct: 4 MLGLDGAGKTTILYKLKLGEVVTTIPTIG 32
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 32.1 bits (73), Expect = 0.79
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 88 VRTLSGGNKRKLSTAIALLG--NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
R LS G R L+ A LL PPL+ LDEP + + P L + A + VI+
Sbjct: 268 DRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQ-VIV 326
Query: 146 TSHNM-------EECEALCTKL 160
++H+ E +
Sbjct: 327 STHSPRLLNAVEEHSVFWLDRE 348
Score = 32.1 bits (73), Expect = 0.79
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 475 VRTLSGGNKRKLSTAIALLG--NPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 532
R LS G R L+ A LL PPL+ LDEP + + P L + A + VI+
Sbjct: 268 DRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQ-VIV 326
Query: 533 TSHNM-------EECEALCTKL 547
++H+ E +
Sbjct: 327 STHSPRLLNAVEEHSVFWLDRE 348
>gnl|CDD|215925 pfam00448, SRP54, SRP54-type protein, GTPase domain. This family
includes relatives of the G-domain of the SRP54 family
of proteins.
Length = 196
Score = 31.4 bits (72), Expect = 0.87
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 377 LLGLNGAGKTTT 388
L+GL G+GKTTT
Sbjct: 6 LVGLQGSGKTTT 17
>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family. Pfam combines a
number of different Prosite families together.
Length = 174
Score = 31.0 bits (71), Expect = 1.0
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 377 LLGLNGAGKTTTFKMLTG----AIKPTSG 401
+LGL+ AGKTT L PT G
Sbjct: 19 ILGLDNAGKTTILYKLKLGEIVTTIPTIG 47
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 31.5 bits (72), Expect = 1.1
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 324 DDVRKERERVEHGADSGDV--LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLN 381
+++RK + + D V + + L +I K + + +G+N
Sbjct: 91 EELRKREGKKKKIKDEETVKEALREALIEIL--RPVDKVDLPLEIPKEKKPFVILFVGVN 148
Query: 382 GAGKTTT 388
G GKTTT
Sbjct: 149 GVGKTTT 155
>gnl|CDD|239389 cd03115, SRP, The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria
and the endoplasmic reticulum in eukaryotes. SRP
recognizes N-terminal sighnal sequences of newly
synthesized polypeptides at the ribosome. The
SRP-polypeptide complex is then targeted to the membrane
by an interaction between SRP and its cognated receptor
(SR). In mammals, SRP consists of six protein subunits
and a 7SL RNA. One of these subunits is a 54 kd protein
(SRP54), which is a GTP-binding protein that interacts
with the signal sequence when it emerges from the
ribosome. SRP54 is a multidomain protein that consists
of an N-terminal domain, followed by a central G
(GTPase) domain and a C-terminal M domain.
Length = 173
Score = 30.6 bits (70), Expect = 1.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 377 LLGLNGAGKTTT 388
L+GL G GKTTT
Sbjct: 5 LVGLQGVGKTTT 16
>gnl|CDD|236686 PRK10416, PRK10416, signal recognition particle-docking protein
FtsY; Provisional.
Length = 318
Score = 30.8 bits (71), Expect = 1.8
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 324 DDVRKE--RERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLN 381
+++R+ R+ ++ + ++L + L +I +P ++ + ++G+N
Sbjct: 71 EELRERVKRKNLKDPEELKELLK-EELAEIL------EPVEKPLNIEEKKPFVILVVGVN 123
Query: 382 GAGKTTT 388
G GKTTT
Sbjct: 124 GVGKTTT 130
>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase. Arl2 (Arf-like 2) GTPases
are members of the Arf family that bind GDP and GTP with
very low affinity. Unlike most Arf family proteins, Arl2
is not myristoylated at its N-terminal helix. The
protein PDE-delta, first identified in photoreceptor rod
cells, binds specifically to Arl2 and is structurally
very similar to RhoGDI. Despite the high structural
similarity between Arl2 and Rho proteins and between
PDE-delta and RhoGDI, the interactions between the
GTPases and their effectors are very different. In its
GTP bound form, Arl2 interacts with the protein Binder
of Arl2 (BART), and the complex is believed to play a
role in mitochondrial adenine nucleotide transport. In
its GDP bound form, Arl2 interacts with tubulin- folding
Cofactor D; this interaction is believed to play a role
in regulation of microtubule dynamics that impact the
cytoskeleton, cell division, and cytokinesis.
Length = 173
Score = 30.0 bits (68), Expect = 2.1
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 377 LLGLNGAGKTTTFKMLTG----AIKPTSG 401
+LGL+ AGKTT K G I PT G
Sbjct: 19 MLGLDNAGKTTILKKFNGEDISTISPTLG 47
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 30.8 bits (70), Expect = 2.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 124
LS G K+ L+ A L+ P ++ LDE T+ +D G
Sbjct: 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510
Score = 30.8 bits (70), Expect = 2.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 511
LS G K+ L+ A L+ P ++ LDE T+ +D G
Sbjct: 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510
>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases.
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like
Arl4 and Arl7, are localized to the nucleus and
nucleolus. Arl5 is developmentally regulated during
embryogenesis in mice. Human Arl5 interacts with the
heterochromatin protein 1-alpha (HP1alpha), a nonhistone
chromosomal protein that is associated with
heterochromatin and telomeres, and prevents telomere
fusion. Arl5 may also play a role in embryonic nuclear
dynamics and/or signaling cascades. Arl8 was identified
from a fetal cartilage cDNA library. It is found in
brain, heart, lung, cartilage, and kidney. No function
has been assigned for Arl8 to date.
Length = 174
Score = 30.0 bits (68), Expect = 2.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 377 LLGLNGAGKTTT-FKMLTGAI---KPTSG 401
++GL+ AGKTT ++ L G + PT G
Sbjct: 20 IVGLDNAGKTTILYQFLLGEVVHTSPTIG 48
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 29.8 bits (67), Expect = 2.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 375 FGLLGLNGAGKTTTFKMLTGA 395
+ G NG+GKTT + A
Sbjct: 22 TLIYGPNGSGKTTILDAIRWA 42
>gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein
VexC; Provisional.
Length = 213
Score = 29.6 bits (66), Expect = 3.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 362 VNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+++ F +G E G+L G+GKTT ++L G P G+
Sbjct: 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGD 43
>gnl|CDD|182681 PRK10727, PRK10727, DNA-binding transcriptional regulator GalR;
Provisional.
Length = 343
Score = 29.7 bits (67), Expect = 3.9
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 407 NHSIRDSMDLVRSYIGYCPQFD-ALNDRL----TPRE------HLEFYSRVRNVPSVLLN 455
NHSI D+ D ++ Y + NDRL P E E R RN +V
Sbjct: 185 NHSISDAEDRLQGYYDALAESGIPANDRLVTFGEPDESGGEQAMTELLGRGRNFTAV--- 241
Query: 456 TIVNESLNKFALGHYSDREVR 476
N+S+ A+G +D +
Sbjct: 242 ACYNDSMAAGAMGVLNDNGID 262
>gnl|CDD|232804 TIGR00064, ftsY, signal recognition particle-docking protein FtsY.
There is a weak division between FtsY and SRP54; both
are GTPases. In E.coli, ftsY is an essential gene
located in an operon with cell division genes ftsE and
ftsX, but its apparent function is as the signal
recognition particle docking protein [Protein fate,
Protein and peptide secretion and trafficking].
Length = 272
Score = 29.5 bits (67), Expect = 4.3
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 21/73 (28%)
Query: 324 DDVRKE--RERVEHGADSGDVLVVKRLFKIY------ANSKGTKPAVNQISFGVGRGECF 375
+ ++KE ++V+ ++L L +I + KP V
Sbjct: 29 EALKKELKGKKVKDAELLKEILKEY-LKEILKETDLELIVEENKPNV------------I 75
Query: 376 GLLGLNGAGKTTT 388
+G+NG GKTTT
Sbjct: 76 LFVGVNGVGKTTT 88
>gnl|CDD|218594 pfam05450, Nicastrin, Nicastrin. Nicastrin and presenilin are two
major components of the gamma-secretase complex, which
executes the intramembrane proteolysis of type I
integral membrane proteins such as the amyloid precursor
protein (APP) and Notch. Nicastrin is synthesised in
fibroblasts and neurons as an
endoglycosidase-H-sensitive glycosylated precursor
protein (immature nicastrin) and is then modified by
complex glycosylation in the Golgi apparatus and by
sialylation in the trans-Golgi network (mature
nicastrin). A region featured in this family has a fold
similar to human transferrin receptor (TfR) and a
bacterial aminopeptidase. It is implicated in the
pathogenesis of Alzheimer's disease.
Length = 227
Score = 29.1 bits (65), Expect = 4.8
Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 1/97 (1%)
Query: 378 LGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPR 437
+G G + F + A + S + +RS N L P
Sbjct: 101 IGQVGKATSRKFYLHVDAARNQS-VKTQTLDLLDRIEKSLRSGNFKVLPASTSNPGLPPS 159
Query: 438 EHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
F N +V+L E N+F D E
Sbjct: 160 SLQSFLRANPNFSAVVLADRPTEFENRFYHSILDDAE 196
>gnl|CDD|236563 PRK09554, feoB, ferrous iron transport protein B; Reviewed.
Length = 772
Score = 29.7 bits (67), Expect = 4.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 376 GLLGLNGAGKTTTFKMLTGA 395
GL+G +GKTT F LTGA
Sbjct: 7 GLIGNPNSGKTTLFNQLTGA 26
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 28.8 bits (65), Expect = 5.3
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 91 LSGGNKRKLST-----AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
LSGG ++ LS A+ + P LDE + +DP RR + I+ I+
Sbjct: 95 LSGG-EKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIV 153
Query: 146 TSHNMEECEALCTKLTI-MVNGQFT 169
+ E E + + V+G T
Sbjct: 154 ITLKKEMFENADKLIGVLFVHGVST 178
Score = 28.8 bits (65), Expect = 5.3
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 478 LSGGNKRKLST-----AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 532
LSGG ++ LS A+ + P LDE + +DP RR + I+ I+
Sbjct: 95 LSGG-EKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIV 153
Query: 533 TSHNMEECEALCTKLTI-MVNGQFT 556
+ E E + + V+G T
Sbjct: 154 ITLKKEMFENADKLIGVLFVHGVST 178
>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase. Arl3 (Arf-like 3) is an
Arf family protein that differs from most Arf family
members in the N-terminal extension. In is inactive,
GDP-bound form, the N-terminal extension forms an
elongated loop that is hydrophobically anchored into the
membrane surface; however, it has been proposed that
this region might form a helix in the GTP-bound form.
The delta subunit of the rod-specific cyclic GMP
phosphodiesterase type 6 (PDEdelta) is an Arl3 effector.
Arl3 binds microtubules in a regulated manner to alter
specific aspects of cytokinesis via interactions with
retinitis pigmentosa 2 (RP2). It has been proposed that
RP2 functions in concert with Arl3 to link the cell
membrane and the cytoskeleton in photoreceptors as part
of the cell signaling or vesicular transport machinery.
In mice, the absence of Arl3 is associated with abnormal
epithelial cell proliferation and cyst formation.
Length = 174
Score = 28.9 bits (65), Expect = 5.3
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 377 LLGLNGAGKTTTFKMLTGA----IKPTSG 401
LLGL+ AGKTT K L I PT G
Sbjct: 20 LLGLDNAGKTTILKQLASEDISHITPTQG 48
>gnl|CDD|200477 cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in
cyclomaltodextrinases and related proteins.
Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase
(NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC
3.2.1.133) catalyze the hydrolysis of alpha-(1,4)
glycosidic linkages on a number of substrates including
cyclomaltodextrins (CDs), pullulan, and starch. These
enzymes hydrolyze CDs and starch to maltose and pullulan
to panose by cleavage of alpha-1,4 glycosidic bonds
whereas alpha-amylases essentially lack activity on CDs
and pullulan. They also catalyze transglycosylation of
oligosaccharides to the C3-, C4- or C6-hydroxyl groups
of various acceptor sugar molecules. Since these
proteins are nearly indistinguishable from each other,
they are referred to as cyclomaltodextrinases (CMDs).
The Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
residues (GH31). The family members are quite extensive
and include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 389
Score = 29.4 bits (67), Expect = 6.1
Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 31/124 (25%)
Query: 405 VMNHSIRDSMDLVRSYIGYCPQFDA--LNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
VMN+ RD V ++ + DA +RL Y + V ++N
Sbjct: 255 VMNYPFRD---AVLDFLAG-EEIDAEEFANRLN--SLRANYPK--QVLYAMMN------- 299
Query: 463 NKFALG-HYSDREVRTLSGGNKRKLSTAIALL----GNPPLIFL-DEP--TSGMDPGARR 514
L H + R + TL GG+K +L A+AL G P I+ DE G DP RR
Sbjct: 300 ---LLDSHDTPR-ILTLLGGDKARLKLALALQFTLPG-APCIYYGDEIGLEGGKDPDNRR 354
Query: 515 -FLW 517
W
Sbjct: 355 PMPW 358
>gnl|CDD|187693 cd07180, RNase_HII_Archaea_like, Archaeal ribonuclease HII.
Ribonuclease (RNase) H is classified into two families,
type I (prokaryotic RNase HI, eukaryotic RNase H1 and
viral RNase H) and type II (prokaryotic RNase HII and
HIII, archaeal RNase HII and eukaryotic RNase H2/HII).
RNase H endonucleolytically hydrolyzes an RNA strand
when it is annealed to a complementary DNA strand in the
presence of divalent cations, in DNA replication or
repair. Some archaeal RNase HII show broad divalent
cation specificity. It is proposed that three of the
four acidic residues at the active site are involved in
metal binding and the fourth one involved in the
catalytic process in archaea. Most archaeal genomes
contain multiple RNase H genes. Despite a lack of
evidence for homology from sequence comparisons, type I
and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. It appears that type I and type II RNases H
also have overlapping functions in cells, as
over-expression of Escherichia coli RNase HII can
complement an RNase HI deletion phenotype in E. coli.
Length = 204
Score = 28.7 bits (65), Expect = 6.9
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 15/69 (21%)
Query: 291 ALYSAINL-SIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERER--------------VEH 335
NL +E + F+ R L P V ++ DV +ER EH
Sbjct: 72 ERRERGNLNELEVEAFAELINRLKLKPEIVYVDACDVNEERFAERLRERLNTGVEVIAEH 131
Query: 336 GADSGDVLV 344
AD+ +V
Sbjct: 132 KADAKYPVV 140
>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta), together with SR-alpha, forms the
heterodimeric signal recognition particle (SRP). Signal
recognition particle receptor, beta subunit (SR-beta).
SR-beta and SR-alpha form the heterodimeric signal
recognition particle (SRP or SR) receptor that binds SRP
to regulate protein translocation across the ER
membrane. Nascent polypeptide chains are synthesized
with an N-terminal hydrophobic signal sequence that
binds SRP54, a component of the SRP. SRP directs
targeting of the ribosome-nascent chain complex (RNC) to
the ER membrane via interaction with the SR, which is
localized to the ER membrane. The RNC is then
transferred to the protein-conducting channel, or
translocon, which facilitates polypeptide translation
across the ER membrane or integration into the ER
membrane. SR-beta is found only in eukaryotes; it is
believed to control the release of the signal sequence
from SRP54 upon binding of the ribosome to the
translocon. High expression of SR-beta has been observed
in human colon cancer, suggesting it may play a role in
the development of this type of cancer.
Length = 202
Score = 28.4 bits (64), Expect = 7.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 377 LLGLNGAGKTTTFKMLTGAIKPTS 400
LLG + +GKT F LT ++
Sbjct: 5 LLGPSDSGKTALFTKLTTGKVRST 28
>gnl|CDD|236167 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional
regulator; Reviewed.
Length = 309
Score = 28.8 bits (65), Expect = 8.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 377 LLGLNGAGKTTTFKMLTGAIK 397
L+GL GAGK+T +ML +
Sbjct: 138 LIGLRGAGKSTLGRMLAARLG 158
>gnl|CDD|184491 PRK14079, recF, recombination protein F; Provisional.
Length = 349
Score = 28.6 bits (64), Expect = 8.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 106 LGNPPLIFLDEPTSGMDPGARRFL 129
G P++ +D+ T+ +DP R L
Sbjct: 288 FGEAPVLLVDDFTAELDPRRRGAL 311
Score = 28.6 bits (64), Expect = 8.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 493 LGNPPLIFLDEPTSGMDPGARRFL 516
G P++ +D+ T+ +DP R L
Sbjct: 288 FGEAPVLLVDDFTAELDPRRRGAL 311
>gnl|CDD|213243 cd03276, ABC_SMC6_euk, ATP-binding cassette domain of eukaryotic
SM6 proteins. The structural maintenance of chromosomes
(SMC) proteins are large (approximately 110 to 170 kDa),
and each is arranged into five recognizable domains.
Amino-acid sequence homology of SMC proteins between
species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 198
Score = 27.9 bits (63), Expect = 9.5
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 86 REVRTLSGGNKRKLSTAIALLG-----NPPLIFLDEPTSGMDPGARRF 128
R+V+TLSGG +R ST LL P LDE MD R+
Sbjct: 105 RDVKTLSGG-ERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKI 151
Score = 27.9 bits (63), Expect = 9.5
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 473 REVRTLSGGNKRKLSTAIALLG-----NPPLIFLDEPTSGMDPGARRF 515
R+V+TLSGG +R ST LL P LDE MD R+
Sbjct: 105 RDVKTLSGG-ERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKI 151
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,300,601
Number of extensions: 2769330
Number of successful extensions: 3906
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3462
Number of HSP's successfully gapped: 910
Length of query: 566
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 464
Effective length of database: 6,413,494
Effective search space: 2975861216
Effective search space used: 2975861216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.4 bits)