RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7366
(566 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 262 bits (671), Expect = 2e-84
Identities = 81/238 (34%), Positives = 118/238 (49%), Gaps = 4/238 (1%)
Query: 329 ERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTT 388
+++ H +VVK L K G K + ISF + GE FGL+G NGAGKTTT
Sbjct: 2 GSDKIHHHHHHMGAVVVKDLRKRI----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTT 57
Query: 389 FKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN 448
++++ IKP+SG V ++ + VR I Y P+ + E+L F +
Sbjct: 58 LRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA 117
Query: 449 VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 508
S + +V + LG V T S G RKL A AL+ NP L LDEPTSG+
Sbjct: 118 SSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGL 177
Query: 509 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
D R + +++A EG ++++SHNM E E LC ++ ++ NG G+ LK
Sbjct: 178 DVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235
Score = 168 bits (427), Expect = 2e-48
Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 5/184 (2%)
Query: 2 GLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNL--SYIGYCPQFDALNDRLTPREHLEFY 56
G TTT + + TL+ + V G N + + I Y P+ + E+L F
Sbjct: 53 GKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFV 112
Query: 57 SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDE 116
+ S + +V + LG V T S G RKL A AL+ NP L LDE
Sbjct: 113 AGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE 172
Query: 117 PTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATH 176
PTSG+D R + +++A EG ++++SHNM E E LC ++ ++ NG G+
Sbjct: 173 PTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEE 232
Query: 177 LKSK 180
LK +
Sbjct: 233 LKER 236
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 216 bits (553), Expect = 2e-67
Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 17/221 (7%)
Query: 335 HGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394
H G L ++ L Y KP + +I+ + +G G NG GKTT K ++
Sbjct: 3 HHHHHGSKLEIRDLSVGYD-----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST 57
Query: 395 AIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL 454
+KP G I V+ I + P+ + +++ ++L+ + + V
Sbjct: 58 YLKPLKGEIIYNGVPITK----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV--N 111
Query: 455 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
+ ++L + + + LS G R++ A LL N + LD+P +D ++
Sbjct: 112 KNEIMDALESVEVLDLKKK-LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 170
Query: 515 FLWTCIERAVSEGRCVIL-TSHNMEECEALCTKLTIMVNGQ 554
+ I + E VI+ + + C+ +
Sbjct: 171 KVLKSILEILKEKGIVIISSREELSYCD----VNENLHKYS 207
Score = 132 bits (335), Expect = 7e-36
Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 13/170 (7%)
Query: 2 GLTTTPKRVVTLLLTTQ---KVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSR 58
G TT K + T L + G I K I + P+ + +++ ++L+ +
Sbjct: 47 GKTTLLKTISTYLKPLKGEIIYNGVP--ITKVKGKIFFLPEEIIVPRKISVEDYLKAVAS 104
Query: 59 VRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 118
+ V + ++L + + + LS G R++ A LL N + LD+P
Sbjct: 105 LYGVKV--NKNEIMDALESVEVLDLKKK-LGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161
Query: 119 SGMDPGARRFLWTCIERAVSEGRCVIL-TSHNMEECEALCTKLTIMVNGQ 167
+D ++ + I + E VI+ + + C+ +
Sbjct: 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD----VNENLHKYS 207
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 160 bits (406), Expect = 3e-45
Identities = 54/236 (22%), Positives = 107/236 (45%), Gaps = 19/236 (8%)
Query: 338 DSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIK 397
S ++ + ++ ++ K + +IS+ + +G+ + L GLNGAGKTT +L
Sbjct: 17 GSHMLIQLDQIGRMK----QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72
Query: 398 PTSGNAYVMNH---SIRDSMDLVRSYIGYCPQFDALNDRLTPREHLE------FYSRV-- 446
TSG + + S + VR +IG+ +L ++ E + + +
Sbjct: 73 ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSH--SLLEKFQEGERVIDVVISGAFKSIGV 130
Query: 447 RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
+ ++ L + + + + LS G K+++ A AL+G P ++ LDEP +
Sbjct: 131 YQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 507 GMDPGARRFLWTCIERAVSEGR--CVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
G+D AR L + ++ +I +H +EE A +K+ ++ +GQ G+
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246
Score = 95.7 bits (239), Expect = 3e-22
Identities = 32/152 (21%), Positives = 67/152 (44%), Gaps = 12/152 (7%)
Query: 32 SYIGYCPQFDALNDRLTPREHLE------FYSRV--RNVPSVLLNTIVNESLNKFALGHY 83
+IG+ +L ++ E + + + + ++ L +
Sbjct: 97 QHIGFVSH--SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAK 154
Query: 84 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR-- 141
+ + + LS G K+++ A AL+G P ++ LDEP +G+D AR L + ++
Sbjct: 155 AQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTL 214
Query: 142 CVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
+I +H +EE A +K+ ++ +GQ G+
Sbjct: 215 AMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 127 bits (322), Expect = 1e-33
Identities = 50/211 (23%), Positives = 91/211 (43%), Gaps = 15/211 (7%)
Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
+K + + + ++ I+ V GE +LG NG+GKTT + ++G + P SGN +
Sbjct: 4 LKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISG-LLPYSGNIF 61
Query: 405 VMNHSIRDSMDLVRSYIGYCPQ-FDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLN 463
+ +R +R+YI Y +A +T + + Y ++ + + E L
Sbjct: 62 INGMEVRK----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLD----RDLFLEMLK 113
Query: 464 KFALG-HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
LG R++ LS G + T++AL P ++ LDEP +D R + I+
Sbjct: 114 ALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE 173
Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNG 553
G+ IL +H ++ + G
Sbjct: 174 ---YGKEGILVTHELDMLNLYKEYKAYFLVG 201
Score = 72.8 bits (179), Expect = 1e-14
Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 10/141 (7%)
Query: 27 IDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG-HYSD 85
I + Y P+ + +T + + Y ++ + + E L LG
Sbjct: 70 IRNYIRYSTNLPEAYEIG--VTVNDIVYLYEELKGLD----RDLFLEMLKALKLGEEILR 123
Query: 86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVIL 145
R++ LS G + T++AL P ++ LDEP +D R + I+ G+ IL
Sbjct: 124 RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE---YGKEGIL 180
Query: 146 TSHNMEECEALCTKLTIMVNG 166
+H ++ + G
Sbjct: 181 VTHELDMLNLYKEYKAYFLVG 201
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 127 bits (322), Expect = 2e-33
Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 26/233 (11%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
+L V+ L Y++ A+ I+ + RGE +LG NG GK+T F+ G +KP+SG
Sbjct: 7 ILKVEELNYNYSDGT---HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63
Query: 402 NAYVMNHSI---RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV--------RN-- 448
N I R + +R IG Q P ++ F + V N
Sbjct: 64 RILFDNKPIDYSRKGIMKLRESIGIVFQD--------P-DNQLFSASVYQDVSFGAVNMK 114
Query: 449 VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGM 508
+P + V+ +L + + H D+ LS G K++++ A L+ P ++ LDEPT+G+
Sbjct: 115 LPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 509 DPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
DP + + E G +I+ +H+++ C + +M G+ G+
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
Score = 80.3 bits (199), Expect = 6e-17
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
V+ +L + + H D+ LS G K++++ A L+ P ++ LDEPT+G+DP +
Sbjct: 124 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIM 183
Query: 131 TCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
+ E G +I+ +H+++ C + +M G+ G+
Sbjct: 184 KLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 123 bits (311), Expect = 5e-32
Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 31/232 (13%)
Query: 345 VKRLFKIY-ANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNA 403
V + I+ + K A+ +S + GEC + G G+GK+T +++ G I+PTSG+
Sbjct: 5 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV 64
Query: 404 YV--MNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV--------RNV-PSV 452
+ +R IG Q+ P E F RV +N P
Sbjct: 65 LYDGERKKGYE----IRRNIGIAFQY--------P-EDQFFAERVFDEVAFAVKNFYPDR 111
Query: 453 LLNTIVNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIA--LLGNPPLIFLDEPTSGM 508
+V +++ L + DR LSGG KR++ AIA ++ P ++ LDEP G+
Sbjct: 112 DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRV--AIASVIVHEPDILILDEPLVGL 169
Query: 509 DPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
D + L +E+ + G+ VIL SH++E ++ ++ G+ G+
Sbjct: 170 DREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
Score = 80.7 bits (200), Expect = 4e-17
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 71 VNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIA--LLGNPPLIFLDEPTSGMDPGAR 126
V +++ L + DR LSGG KR++ AIA ++ P ++ LDEP G+D +
Sbjct: 117 VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRV--AIASVIVHEPDILILDEPLVGLDREGK 174
Query: 127 RFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
L +E+ + G+ VIL SH++E ++ ++ G+ G+
Sbjct: 175 TDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 128 bits (325), Expect = 5e-32
Identities = 55/243 (22%), Positives = 92/243 (37%), Gaps = 17/243 (6%)
Query: 309 FTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFG 368
F + L + + D+++ + V S D+ + KI K + +
Sbjct: 233 FLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKII--KKLGDFQLVVDNGE 290
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD 428
GE G+LG NG GKTT ++L G I G+ + Y PQ
Sbjct: 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS-----------YKPQRI 339
Query: 429 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 488
N T +++LE S+ S + E + L + V LSGG +KL
Sbjct: 340 FPNYDGTVQQYLENASKDALSTS---SWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYI 396
Query: 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKL 547
A L L LD+P+S +D R + I+R E + H++ + + ++
Sbjct: 397 AATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRI 456
Query: 548 TIM 550
+
Sbjct: 457 IVF 459
Score = 90.5 bits (225), Expect = 2e-19
Identities = 38/187 (20%), Positives = 73/187 (39%), Gaps = 12/187 (6%)
Query: 361 AVNQISFGVGR-GECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRS 419
+ G+LG NG GKTT K+L G I P G+
Sbjct: 13 GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGK 72
Query: 420 YIGYCPQFDALNDRLTPR---EHLEFYSRV------RNVPSVLLNTIVNESLNKFALGHY 470
I + + ++ L +++E+ S+ + + +E + +
Sbjct: 73 EIYNYFK-ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNL 131
Query: 471 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 530
+++ LSGG ++L A +LL + D+P+S +D R + I R + + + V
Sbjct: 132 WNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI-RELLKNKYV 190
Query: 531 ILTSHNM 537
I+ H++
Sbjct: 191 IVVDHDL 197
Score = 81.6 bits (202), Expect = 2e-16
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 4/139 (2%)
Query: 26 TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 85
++ + Y PQ N T +++LE S+ S + E + L +
Sbjct: 324 SVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTS---SWFFEEVTKRLNLHRLLE 380
Query: 86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVI 144
V LSGG +KL A L L LD+P+S +D R + I+R E
Sbjct: 381 SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440
Query: 145 LTSHNMEECEALCTKLTIM 163
+ H++ + + ++ +
Sbjct: 441 IIDHDLSIHDYIADRIIVF 459
Score = 59.7 bits (145), Expect = 1e-09
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
+E + + +++ LSGG ++L A +LL + D+P+S +D R +
Sbjct: 119 KDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA 178
Query: 131 TCIERAVSEGRCVILTSHNM 150
I R + + + VI+ H++
Sbjct: 179 KAI-RELLKNKYVIVVDHDL 197
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 126 bits (319), Expect = 5e-31
Identities = 52/243 (21%), Positives = 90/243 (37%), Gaps = 22/243 (9%)
Query: 309 FTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFG 368
F + L V ++R + + ++ RL K Y +
Sbjct: 324 FLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDY-----GSFKLEVEPGE 378
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD 428
+ +GE G++G NG GKTT KML G +PT G + + + Y PQ+
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-------KVEWDLTVA-----YKPQYI 426
Query: 429 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 488
T E + N E L + DR V LSGG ++++
Sbjct: 427 KAEYEGTVYEL--LSKIDS--SKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAI 482
Query: 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNMEECEALCTKL 547
A LL + + LDEP++ +D R + I + ++ H++ + + +L
Sbjct: 483 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 542
Query: 548 TIM 550
+
Sbjct: 543 IVF 545
Score = 93.9 bits (234), Expect = 2e-20
Identities = 50/193 (25%), Positives = 76/193 (39%), Gaps = 18/193 (9%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
G V V G G++G NG GKTT K+L G + P ++ +
Sbjct: 100 RYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159
Query: 415 D-------LVRSYIG-----YCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
R G PQ+ L + + E +V V E +
Sbjct: 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEV------GKFEEVV 213
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
+ L + DRE+ LSGG ++++ A ALL F DEP+S +D R + I R
Sbjct: 214 KELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273
Query: 523 AVSEGRCVILTSH 535
+EG+ V++ H
Sbjct: 274 LANEGKAVLVVEH 286
Score = 78.1 bits (193), Expect = 2e-15
Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 6/139 (4%)
Query: 26 TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 85
++ +L+ + Y PQ+ T E + N E L + D
Sbjct: 412 KVEWDLT-VAYKPQYIKAEYEGTVYEL--LSKIDS--SKLNSNFYKTELLKPLGIIDLYD 466
Query: 86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVI 144
R V LSGG ++++ A LL + + LDEP++ +D R + I + +
Sbjct: 467 RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
Query: 145 LTSHNMEECEALCTKLTIM 163
+ H++ + + +L +
Sbjct: 527 VVEHDVLMIDYVSDRLIVF 545
Score = 57.7 bits (140), Expect = 5e-09
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
E + + L + DRE+ LSGG ++++ A ALL F DEP+S +D R +
Sbjct: 209 FEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVA 268
Query: 131 TCIERAVSEGRCVILTSH 148
I R +EG+ V++ H
Sbjct: 269 RVIRRLANEGKAVLVVEH 286
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 125 bits (316), Expect = 7e-31
Identities = 54/243 (22%), Positives = 92/243 (37%), Gaps = 22/243 (9%)
Query: 309 FTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFG 368
F R L V +++ + + ++ RL K Y +
Sbjct: 254 FLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYG-----SFRLEVEPGE 308
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD 428
+ +GE G++G NG GKTT KML G +PT G I + + Y PQ+
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-------KIEWDLTVA-----YKPQYI 356
Query: 429 ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLST 488
+ T E + N E L + DREV LSGG ++++
Sbjct: 357 KADYEGTVYE--LLSKIDA--SKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAI 412
Query: 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNMEECEALCTKL 547
A LL + + LDEP++ +D R + I + ++ H++ + + +L
Sbjct: 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 472
Query: 548 TIM 550
+
Sbjct: 473 MVF 475
Score = 94.7 bits (236), Expect = 1e-20
Identities = 48/215 (22%), Positives = 85/215 (39%), Gaps = 18/215 (8%)
Query: 335 HGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTG 394
H + +++L + + G V V G G++G NG GK+T K+L G
Sbjct: 10 HSSGLVPRSHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAG 69
Query: 395 AIKP------TSGNAYVMNHSIRDSMDLVRSYIGYC------PQFDALNDRLTPREHLEF 442
+ P S + + + + PQ+ L + + +E
Sbjct: 70 QLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIEL 129
Query: 443 YSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLD 502
+ + E + L + +RE++ LSGG ++++ A ALL N F D
Sbjct: 130 LKKADET------GKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFD 183
Query: 503 EPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 537
EP+S +D R I R EG+ V++ H++
Sbjct: 184 EPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218
Score = 70.8 bits (174), Expect = 4e-13
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 26 TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 85
I+ +L+ + Y PQ+ + T E + N E L + D
Sbjct: 342 KIEWDLT-VAYKPQYIKADYEGTVYE--LLSKIDA--SKLNSNFYKTELLKPLGIIDLYD 396
Query: 86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVI 144
REV LSGG ++++ A LL + + LDEP++ +D R + I + +
Sbjct: 397 REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
Query: 145 LTSHNMEECEALCTKLTIM 163
+ H++ + + +L +
Sbjct: 457 VVEHDVLMIDYVSDRLMVF 475
Score = 60.4 bits (147), Expect = 7e-10
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 38 PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 97
PQ+ L + + +E + + E + L + +RE++ LSGG +
Sbjct: 112 PQYVDLIPKAVKGKVIELLKKADET------GKLEEVVKALELENVLEREIQHLSGGELQ 165
Query: 98 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNM 150
+++ A ALL N F DEP+S +D R I R EG+ V++ H++
Sbjct: 166 RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 122 bits (308), Expect = 1e-29
Identities = 54/265 (20%), Positives = 91/265 (34%), Gaps = 23/265 (8%)
Query: 293 YSAINLSIEYKVFSRCFTRSNLH--PVPVSLEEDDVRKERERVEHGADSGDVLVVKRLFK 350
Y + L + F ++ + E R + DS K
Sbjct: 301 YGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLK 360
Query: 351 IYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 410
+N E ++G NG GKTT K+L GA+KP G
Sbjct: 361 KTQG----DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG--------- 407
Query: 411 RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY 470
+D L S PQ A T R+ F+ ++R L + + +
Sbjct: 408 QDIPKLNVSMK---PQKIAPKFPGTVRQL--FFKKIRG--QFLNPQFQTDVVKPLRIDDI 460
Query: 471 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRC 529
D+EV+ LSGG ++++ +AL + +DEP++ +D R I R + +
Sbjct: 461 IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT 520
Query: 530 VILTSHNMEECEALCTKLTIMVNGQ 554
+ H+ L K+ +
Sbjct: 521 AFIVEHDFIMATYLADKVIVFEGIP 545
Score = 97.4 bits (243), Expect = 2e-21
Identities = 44/226 (19%), Positives = 82/226 (36%), Gaps = 20/226 (8%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY------------ 404
G+ GL+G NG GK+T K+L G KP G
Sbjct: 88 SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYF 147
Query: 405 ----VMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE 460
+ N+ + D +++ I PQ+ R + ++ + + V
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIK--PQYVDNIPRAI-KGPVQKVGELLKLRMEKSPEDVKR 204
Query: 461 SLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 520
+ L + R++ LSGG ++ + ++ + + DEP+S +D R I
Sbjct: 205 YIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQII 264
Query: 521 ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
++ + VI H++ + L + I+ G + G T S
Sbjct: 265 RSLLAPTKYVICVEHDLSVLDYLSDFVCII-YGVPSVYGVVTLPAS 309
Score = 78.1 bits (193), Expect = 2e-15
Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 6/143 (4%)
Query: 26 TIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 85
L+ + PQ A T R+ F+ ++R L + + + D
Sbjct: 408 QDIPKLN-VSMKPQKIAPKFPGTVRQL--FFKKIRG--QFLNPQFQTDVVKPLRIDDIID 462
Query: 86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVI 144
+EV+ LSGG ++++ +AL + +DEP++ +D R I R + +
Sbjct: 463 QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
Query: 145 LTSHNMEECEALCTKLTIMVNGQ 167
+ H+ L K+ +
Sbjct: 523 IVEHDFIMATYLADKVIVFEGIP 545
Score = 65.1 bits (159), Expect = 3e-11
Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
V + L + R++ LSGG ++ + ++ + + DEP+S +D R
Sbjct: 202 VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAA 261
Query: 131 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 179
I ++ + VI H++ + L + I+ G + G T S
Sbjct: 262 QIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII-YGVPSVYGVVTLPAS 309
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 115 bits (291), Expect = 2e-29
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 26/214 (12%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL 416
Q++F + +G+ +LG NG GK+T +L G +P G I
Sbjct: 16 AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG-------KIE----- 63
Query: 417 VRSYIGYCPQFDALNDRLTPRE--------HLEFYSRVRNVPSVLLNTIVNESLNKFALG 468
V IG+ PQF + + + H+ +++ P + ++L+ L
Sbjct: 64 VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK----PKSHDYQVAMQALDYLNLT 119
Query: 469 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEG 527
H + RE +LSGG ++ + A A+ LI LDEPTS +D + + + + A S+
Sbjct: 120 HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQN 179
Query: 528 RCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 561
V+ T+H + A+ K +++N Q G
Sbjct: 180 MTVVFTTHQPNQVVAIANKT-LLLNKQNFKFGET 212
Score = 71.4 bits (176), Expect = 4e-14
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 34 IGYCPQFDALNDRLTPRE--------HLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 85
IG+ PQF + + + H+ +++ P + ++L+ L H +
Sbjct: 68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK----PKSHDYQVAMQALDYLNLTHLAK 123
Query: 86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVI 144
RE +LSGG ++ + A A+ LI LDEPTS +D + + + + A S+ V+
Sbjct: 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183
Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSA 174
T+H + A+ K +++N Q G
Sbjct: 184 FTTHQPNQVVAIANKT-LLLNKQNFKFGET 212
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 112 bits (283), Expect = 2e-28
Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 31/217 (14%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-------S 413
A++ +S V +G+ ++G NG+GK+T ++TG +K G Y N I +
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 414 MDLVRSYIGYCPQFDALNDRLTPRE------HLEFYSRVRNVPSVLLNTIVN-------- 459
+VR++ Q +T E S + S+ +
Sbjct: 82 YGIVRTF-----QTPQPLKEMTVLENLLIGEICPGES---PLNSLFYKKWIPKEEEMVEK 133
Query: 460 --ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
+ L L H DR+ LSGG + + AL+ NP +I +DEP +G+ PG ++
Sbjct: 134 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193
Query: 518 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 554
+ ++G ++ H ++ L +M NGQ
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 230
Score = 68.7 bits (169), Expect = 4e-13
Identities = 27/95 (28%), Positives = 46/95 (48%)
Query: 73 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 132
+ L L H DR+ LSGG + + AL+ NP +I +DEP +G+ PG ++
Sbjct: 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 133 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQ 167
+ ++G ++ H ++ L +M NGQ
Sbjct: 196 VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 230
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 98.0 bits (245), Expect = 3e-23
Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 30/227 (13%)
Query: 351 IYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 410
+ + +S V GE L+G NGAGK+T + G + G+ +
Sbjct: 5 MQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPL 63
Query: 411 RD--SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL-------NTIVNES 461
+ L Y Q V + + L ++N+
Sbjct: 64 EAWSATKLALH-RAYLSQQQTPPFATP----------VWHY--LTLHQHDKTRTELLNDV 110
Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALL-------GNPPLIFLDEPTSGMDPGARR 514
AL R LSGG +++ A +L L+ LDEP + +D +
Sbjct: 111 AGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 170
Query: 515 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 561
L + +G ++++SH++ + ++ G+ G
Sbjct: 171 ALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 217
Score = 56.4 bits (137), Expect = 4e-09
Identities = 26/155 (16%), Positives = 51/155 (32%), Gaps = 26/155 (16%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL-------NTIVNESLNKFALGHYSDR 86
Y Q V + + L ++N+ AL R
Sbjct: 75 RAYLSQQQTPPFATP----------VWHY--LTLHQHDKTRTELLNDVAGALALDDKLGR 122
Query: 87 EVRTLSGGNKRKLSTAIALL-------GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 139
LSGG +++ A +L L+ LDEP + +D + L + +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ 182
Query: 140 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 174
G ++++SH++ + ++ G+ G
Sbjct: 183 GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 217
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 88.9 bits (221), Expect = 2e-19
Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 7/234 (2%)
Query: 327 RKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKT 386
D ++ + + K++ T A+N +S V G+ +G++G +GAGK+
Sbjct: 9 HHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKS 68
Query: 387 TTFKMLTGAIKPTSGNAYVMNHSIR--DSMDL--VRSYIGYCPQ-FDALNDRLTPREHLE 441
T + + +PT G+ V + +L R IG Q F+ L+ R T ++
Sbjct: 69 TLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR-TVFGNVA 127
Query: 442 FYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL 501
+ N P + V E L+ LG D LSGG K++++ A AL NP ++
Sbjct: 128 LPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLC 187
Query: 502 DEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
D+ TS +DP R + ++ G ++L +H M+ + +C + ++ NG+
Sbjct: 188 DQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 241
Score = 41.9 bits (99), Expect = 4e-04
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 39 QFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRK 98
F+ L+ R T ++ + N P + V E L+ LG D LSGG K++
Sbjct: 113 HFNLLSSR-TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQR 171
Query: 99 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALC 157
++ A AL NP ++ D+ TS +DP R + ++ G ++L +H M+ + +C
Sbjct: 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC 231
Query: 158 TKLTIMVNGQ 167
+ ++ NG+
Sbjct: 232 DCVAVISNGE 241
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 79.8 bits (198), Expect = 5e-17
Identities = 59/226 (26%), Positives = 95/226 (42%), Gaps = 8/226 (3%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
VL V+ L Y G A+ I V RG+ L+G NGAGKTTT + G ++ G
Sbjct: 6 VLEVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61
Query: 402 NAYVMNHSI--RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
I + + + R I P+ + LT E+L + R + +
Sbjct: 62 KIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-E 120
Query: 460 ESLNKF-ALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
+ F L + TLSGG ++ L+ AL+ P L+ +DEP+ G+ P ++
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE 180
Query: 519 CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
I++ EG ++L N + ++ GQ G A+ L
Sbjct: 181 VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226
Score = 34.7 bits (81), Expect = 0.047
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 149
TLSGG ++ L+ AL+ P L+ +DEP+ G+ P ++ I++ EG ++L N
Sbjct: 139 TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN 198
Query: 150 MEECEALCTKLTIMVNGQFTCLGSATHL 177
+ ++ GQ G A+ L
Sbjct: 199 ALGALKVAHYGYVLETGQIVLEGKASEL 226
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 82.0 bits (202), Expect = 2e-16
Identities = 44/291 (15%), Positives = 94/291 (32%), Gaps = 39/291 (13%)
Query: 276 WRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEH 335
++I+ + + + I+ + + T + ++ ++ + +
Sbjct: 363 FKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPV 422
Query: 336 GADSGDVLVVKRLFKIYANSK--GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 393
G + D S G K +N+ + R +G+ G NG GK+T + +
Sbjct: 423 GPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA 482
Query: 394 GAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQ-FDALNDRLTPREHL-----EFYSRVR 447
V ++ Y D + + + + ++
Sbjct: 483 NG--------QVDGFPTQEECR-----TVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIK 529
Query: 448 NVPSVLLNTIVNESLNKFALGHYS-DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
+ L +F + LSGG K KL+ A A+L N ++ LDEPT+
Sbjct: 530 ------------DKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTN 577
Query: 507 GMDPGARRFLWTCIERAVSEGRC-VILTSHNMEECEALCTKLTIMVNGQFT 556
+D +L ++ I SH+ + +C + +
Sbjct: 578 HLDTVNVAWL----VNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLR 624
Score = 68.9 bits (168), Expect = 2e-12
Identities = 50/272 (18%), Positives = 87/272 (31%), Gaps = 27/272 (9%)
Query: 290 GALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADSGDVLVVKRLF 349
G +Y+ N I Y + + L++ + R + G D
Sbjct: 728 GEVYTHENCRIAY------IKQHAFAHIESHLDKTPSEYIQWRFQTGED-----RETMDR 776
Query: 350 KIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTF--KMLTGAIKPTSGNAYVMN 407
++ A+N+I G + K T + +
Sbjct: 777 ANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVP 836
Query: 408 HSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL 467
D+ + R + + + R L + E + L
Sbjct: 837 MMSVDNAWIPRGELVES-HSKMVAEVDMKEALASGQFRP------LTRKEIEEHCSMLGL 889
Query: 468 G--HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
S +R LSGG K KL A P LI LDEPT+ +D + L +A+
Sbjct: 890 DPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL----SKALK 945
Query: 526 E-GRCVILTSHNMEECEALCTKLTIMVNGQFT 556
E VI+ +H+ E + L ++ + +G+ T
Sbjct: 946 EFEGGVIIITHSAEFTKNLTEEVWAVKDGRMT 977
Score = 67.4 bits (164), Expect = 7e-12
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 84 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRC 142
S +R LSGG K KL A P LI LDEPT+ +D + L +A+ E
Sbjct: 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL----SKALKEFEGG 950
Query: 143 VILTSHNMEECEALCTKLTIMVNGQFT 169
VI+ +H+ E + L ++ + +G+ T
Sbjct: 951 VIIITHSAEFTKNLTEEVWAVKDGRMT 977
Score = 60.0 bits (145), Expect = 1e-09
Identities = 32/190 (16%), Positives = 63/190 (33%), Gaps = 24/190 (12%)
Query: 346 KRLFKIYANSK----GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
K + K+ +KP + I+F ++G NGAGK+T +LTG + PTSG
Sbjct: 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
Query: 402 NAYVMNHSIRDSMDLVRSYIGYCPQ----FDALNDRLTPREHLEFYSRVRNVPSVLLNTI 457
+ + R I Y Q + TP E+++ +
Sbjct: 729 E-VYTHENCR---------IAYIKQHAFAHIESHLDKTPSEYIQ-----WRFQTGEDRET 773
Query: 458 VNESLNKFAL-GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
++ + + + ++ + G +R + G + G +
Sbjct: 774 MDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSER 833
Query: 517 WTCIERAVSE 526
W + +
Sbjct: 834 WVPMMSVDNA 843
Score = 52.3 bits (125), Expect = 3e-07
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRC-V 143
+ LSGG K KL+ A A+L N ++ LDEPT+ +D +L ++
Sbjct: 543 AMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL----VNYLNTCGITS 598
Query: 144 ILTSHNMEECEALCTKLTIMVNGQFT 169
I SH+ + +C + +
Sbjct: 599 ITISHDSVFLDNVCEYIINYEGLKLR 624
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 76.5 bits (189), Expect = 3e-15
Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 19/183 (10%)
Query: 335 HGADSGDVLV-VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLT 393
H G + + + KIY G +V +SF + GE GLLG +G+GKTT +++
Sbjct: 6 HHHHHGSMTIEFVGVEKIY---PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIA 62
Query: 394 GAIKPTSGNAYVMNHSI-------RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRV 446
G +PT G+ ++ + R+ +G Q AL +T +++ F R
Sbjct: 63 GLERPTKGDVWIGGKRVTDLPPQKRN--------VGLVFQNYALFQHMTVYDNVSFGLRE 114
Query: 447 RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
+ VP ++ V E L L Y++R LSGG +++++ A AL P ++ DEP +
Sbjct: 115 KRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA 174
Query: 507 GMD 509
+D
Sbjct: 175 AID 177
Score = 41.4 bits (98), Expect = 5e-04
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 58 RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 117
R + VP ++ V E L L Y++R LSGG +++++ A AL P ++ DEP
Sbjct: 113 REKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEP 172
Query: 118 TSGMD 122
+ +D
Sbjct: 173 FAAID 177
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 75.7 bits (187), Expect = 6e-15
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 7/175 (4%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L + L K + P +N IS + GE ++G +G GKTT + L G +P SG
Sbjct: 5 LHIGHLSKSF----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 403 AYVMNHSIRDSMDLVRSY---IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
+ +I + +GY Q L LT ++ + + +
Sbjct: 61 ISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE 120
Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
L + + R LSGG +++ + A AL +P LI LDEP S +D RR
Sbjct: 121 AMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRR 175
Score = 38.3 bits (90), Expect = 0.005
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 58 RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 117
+ + L + + R LSGG +++ + A AL +P LI LDEP
Sbjct: 106 GNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEP 165
Query: 118 TSGMDPGARR 127
S +D RR
Sbjct: 166 FSALDEQLRR 175
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 74.9 bits (185), Expect = 8e-15
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 23/175 (13%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
++ ++ L + + N +++ +S V GE F +LG GAGKT +++ G P SG
Sbjct: 1 MIEIESLSRKWKN-----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG 55
Query: 402 NAYVMNHSI-------RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLL 454
+ + D I + Q +L + +++LEF R++ +
Sbjct: 56 RILLDGKDVTDLSPEKHD--------IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD--- 104
Query: 455 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
V ++ + H DR TLSGG +++++ A AL+ NP ++ LDEP S +D
Sbjct: 105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
Score = 39.5 bits (93), Expect = 0.002
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 58 RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 117
R++ + V ++ + H DR TLSGG +++++ A AL+ NP ++ LDEP
Sbjct: 98 RMKKIKD---PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP 154
Query: 118 TSGMD 122
S +D
Sbjct: 155 LSALD 159
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 71.5 bits (176), Expect = 1e-13
Identities = 46/179 (25%), Positives = 87/179 (48%), Gaps = 22/179 (12%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
++VK + K++ G A++ ++ + GE FG+LG +GAGKTT +++ G P++G
Sbjct: 4 IIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 403 AY----VMNHSIRDSMD-------LV-RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVP 450
Y ++ + + + +V +++ AL LT E++ F +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTW--------ALYPNLTAFENIAFPLTNMKMS 113
Query: 451 SVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
+ V E + H + R LSG +++++ A AL+ +P L+ LDEP S +D
Sbjct: 114 KEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
Score = 37.6 bits (88), Expect = 0.008
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 47 LTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL 106
LT E++ F + + V E + H + R LSG +++++ A AL+
Sbjct: 97 LTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALV 156
Query: 107 GNPPLIFLDEPTSGMD 122
+P L+ LDEP S +D
Sbjct: 157 KDPSLLLLDEPFSNLD 172
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 68.7 bits (169), Expect = 3e-13
Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 19/204 (9%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-------RDSMDLV 417
+ F +G + LLG GAGK+ +++ G +KP G + I R
Sbjct: 18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRG----- 71
Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRT 477
IG+ PQ AL L+ ++ + +RNV V + V E K + H DR+
Sbjct: 72 ---IGFVPQDYALFPHLSVYRNIAY--GLRNVERVERDRRVREMAEKLGIAHLLDRKPAR 126
Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHN 536
LSGG +++++ A AL+ P L+ LDEP S +D + L + E ++ +H+
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Query: 537 MEECEALCTKLTIMVNGQFTCLGS 560
+ E L ++ +M+NG+ G
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGK 210
Score = 46.0 bits (110), Expect = 1e-05
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 60 RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 119
RNV V + V E K + H DR+ LSGG +++++ A AL+ P L+ LDEP S
Sbjct: 96 RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLS 155
Query: 120 GMDPGARRFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 173
+D + L + E ++ +H++ E L ++ +M+NG+ G
Sbjct: 156 AVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 68.4 bits (168), Expect = 9e-13
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 40/199 (20%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
+ + +SF V G+ L+G +GAGK+T ++L +SG + I + +
Sbjct: 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASL 126
Query: 418 RSYIGYCPQFDAL-NDRLTPREHLEFYSR--------------------VRNVPSVLLNT 456
RS+IG PQ L ND T +++ Y R + P T
Sbjct: 127 RSHIGVVPQDTVLFND--TIADNIR-YGRVTAGNDEVEAAAQAAGIHDAIMAFPEG-YRT 182
Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
V E R ++ LSGG K++++ A +L P +I LDE TS +D R +
Sbjct: 183 QVGE------------RGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 517 WTCIERAVSEGRCVILTSH 535
+ + V R I+ +H
Sbjct: 230 QASLAK-VCANRTTIVVAH 247
Score = 45.7 bits (109), Expect = 2e-05
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
LSGG K++++ A +L P +I LDE TS +D R + + + V R I+ +H
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRTTIVVAH 247
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 66.8 bits (164), Expect = 1e-12
Identities = 48/203 (23%), Positives = 88/203 (43%), Gaps = 9/203 (4%)
Query: 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 400
++L + + K+ + IS V +GE ++G +G+GK+T +L PT
Sbjct: 3 EILRAENIKKVI----RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE 58
Query: 401 GNAYVMNHSI----RDSMDLVRS-YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLN 455
G ++ + + L+R+ +G+ QF L LT E++ P
Sbjct: 59 GKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK 118
Query: 456 TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRF 515
L++ LG R+ LSGG +++++ A AL P L+F DEPT +D +
Sbjct: 119 ERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR 178
Query: 516 LWTCIERAVSEGRCVILTSHNME 538
+ + G +++ +H E
Sbjct: 179 VMDIFLKINEGGTSIVMVTHERE 201
Score = 40.9 bits (97), Expect = 4e-04
Identities = 30/119 (25%), Positives = 51/119 (42%)
Query: 33 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
+G+ QF L LT E++ P L++ LG R+ LS
Sbjct: 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELS 142
Query: 93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
GG +++++ A AL P L+F DEPT +D + + + G +++ +H E
Sbjct: 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE 201
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 65.3 bits (160), Expect = 5e-12
Identities = 45/209 (21%), Positives = 85/209 (40%), Gaps = 51/209 (24%)
Query: 354 NSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKML------TGAIKPTSGNAYVMN 407
+ + I+F + G L+G G+GK+T K+L G IK +
Sbjct: 28 PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIK-------IGG 80
Query: 408 HSIRD-SMDLVRSYIGYCPQFDAL-NDRLTPREHLEF-------------------YSRV 446
++ + + +RS IG PQ L N+ T + ++ + Y +
Sbjct: 81 KNVNKYNRNSIRSIIGIVPQDTILFNE--TIKYNILYGKLDATDEEVIKATKSAQLYDFI 138
Query: 447 RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
+P +TIV + ++ LSGG +++++ A LL +P ++ DE TS
Sbjct: 139 EALPKKW-DTIVGN------------KGMK-LSGGERQRIAIARCLLKDPKIVIFDEATS 184
Query: 507 GMDPGARRFLWTCIERAVSEGRCVILTSH 535
+D +E + + R +I+ +H
Sbjct: 185 SLDSKTEYLFQKAVED-LRKNRTLIIIAH 212
Score = 45.6 bits (109), Expect = 1e-05
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
++ ++ LSGG +++++ A LL +P ++ DE TS +D +E + + R +I
Sbjct: 151 NKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLI 208
Query: 145 LTSH 148
+ +H
Sbjct: 209 IIAH 212
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 65.5 bits (159), Expect = 1e-11
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 85 DREVRTLSGGNKR------KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 138
+R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T +ER +
Sbjct: 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 302
Query: 139 EGRCVILTSHNME 151
+ VIL SH+ E
Sbjct: 303 KIPQVILVSHDEE 315
Score = 65.5 bits (159), Expect = 1e-11
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 472 DREVRTLSGGNKR------KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVS 525
+R + LSGG + +L+ ++ L G L+ LDEPT +D RR L T +ER +
Sbjct: 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 302
Query: 526 EGRCVILTSHNME 538
+ VIL SH+ E
Sbjct: 303 KIPQVILVSHDEE 315
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 63.6 bits (156), Expect = 2e-11
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 39/199 (19%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
+ + ISF G +G GK+T F +L +PT+G + I + S++
Sbjct: 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENW 74
Query: 418 RSYIGYCPQFDAL-NDRLTPREHLEFYSR--------------------VRNVPSVLLNT 456
RS IG+ Q A+ T RE+L + V N+P LNT
Sbjct: 75 RSQIGFVSQDSAIMAG--TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQ-LNT 131
Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
V E R V+ +SGG +++L+ A A L NP ++ LDE T+ +D + +
Sbjct: 132 EVGE------------RGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 517 WTCIERAVSEGRCVILTSH 535
++ + +GR ++ +H
Sbjct: 179 QKALDS-LMKGRTTLVIAH 196
Score = 43.2 bits (103), Expect = 1e-04
Identities = 19/64 (29%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 85 DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVI 144
+R V+ +SGG +++L+ A A L NP ++ LDE T+ +D + + ++ + +GR +
Sbjct: 135 ERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-LMKGRTTL 192
Query: 145 LTSH 148
+ +H
Sbjct: 193 VIAH 196
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 63.3 bits (155), Expect = 2e-11
Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 11/174 (6%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-KPTS 400
++ +K + K Y + A+ ++ + GE ++G +G+GK+T ++ G + KPT
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTE 59
Query: 401 GNAYVMNHSI----RDSMDLVRS-YIGYCPQFDALNDRLTPREHLE---FYSRVRNVPSV 452
G Y+ N D + +R IG+ Q L LT E++E + +
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 453 LLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 505
E L L +++ + LSGG +++++ A AL NPP+I D+PT
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPT 173
Score = 36.8 bits (86), Expect = 0.012
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 46 RLTPREHLE---FYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLST 101
LT E++E + + E L L +++ + LSGG +++++
Sbjct: 97 LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAI 156
Query: 102 AIALLGNPPLIFLDEPT 118
A AL NPP+I D+PT
Sbjct: 157 ARALANNPPIILADQPT 173
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 59.0 bits (143), Expect = 1e-10
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 41 DALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS-DREVRTLSGGNK--- 96
AL+ E ++ + E+ + + +R + LSGG +
Sbjct: 9 AALS--KIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIAL 66
Query: 97 ---RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
+L+ ++ L G L+ LDEPT +D RR L T +ER + + VIL SH+ E
Sbjct: 67 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124
Score = 59.0 bits (143), Expect = 1e-10
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 428 DALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYS-DREVRTLSGGNK--- 483
AL+ E ++ + E+ + + +R + LSGG +
Sbjct: 9 AALS--KIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIAL 66
Query: 484 ---RKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
+L+ ++ L G L+ LDEPT +D RR L T +ER + + VIL SH+ E
Sbjct: 67 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 61.8 bits (151), Expect = 3e-10
Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 42/175 (24%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
PA+ I+ + G+ L+G +G+GK+T ++T G+ + H +R+ ++ +
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 415
Query: 418 RSYIGYCPQ----FD---------ALNDRLTPRE----------HLEFYSRVRNVPSVLL 454
R+ + Q F+ A + + + +F + + + L
Sbjct: 416 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAM-DF---INKMDNG-L 470
Query: 455 NTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
+TI+ E V LSGG +++++ A ALL + P++ LDE TS +D
Sbjct: 471 DTIIGE------------NGVL-LSGGQRQRIAIARALLRDSPILILDEATSALD 512
Score = 40.3 bits (95), Expect = 0.001
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
LSGG +++++ A ALL + P++ LDE TS +D
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALD 512
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 60.3 bits (147), Expect = 9e-10
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 40/176 (22%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMD 415
KPA++ +SF + +G+ L+G +G+GK+T + T SG+ + H +RD +
Sbjct: 354 KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLT 413
Query: 416 LVRSYIGYCPQ----FD---------ALNDRLTPRE--------HL-EFYSRVRNVPSVL 453
+R + Q F+ A T + H EF + N+P
Sbjct: 414 NLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEF---IENMPQG- 469
Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
L+T++ E LSGG +++++ A ALL + P++ LDE TS +D
Sbjct: 470 LDTVIGE------------NGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALD 512
Score = 40.3 bits (95), Expect = 0.002
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
+LSGG +++++ A ALL + P++ LDE TS +D
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 57.5 bits (140), Expect = 2e-09
Identities = 40/198 (20%), Positives = 89/198 (44%), Gaps = 34/198 (17%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMD 415
+ ++ I+ + +GE G++G +G+GK+T K++ P +G + H + +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 79
Query: 416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRN-----VPSVLLNTIVNESLNKFALGH- 469
+R +G Q +++ + + P + + ++ + K A H
Sbjct: 80 WLRRQVGVVLQ-----------DNVLLNRSIIDNISLANPGMSVEKVIYAA--KLAGAHD 126
Query: 470 --------YS----DREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 517
Y+ ++ LSGG +++++ A AL+ NP ++ DE TS +D + +
Sbjct: 127 FISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 518 TCIERAVSEGRCVILTSH 535
+ + + +GR VI+ +H
Sbjct: 186 RNMHK-ICKGRTVIIIAH 202
Score = 44.4 bits (106), Expect = 4e-05
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
LSGG +++++ A AL+ NP ++ DE TS +D + + + + + +GR VI+ +H
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-ICKGRTVIIIAH 202
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 2e-09
Identities = 86/535 (16%), Positives = 164/535 (30%), Gaps = 170/535 (31%)
Query: 115 DEPTSGMDPGARRFLWTCIERAVSEGRC-----VILTSHNMEECEALCTKLTI-MVNGQF 168
DEPT+ + + FL + V + V+ E L I + +
Sbjct: 52 DEPTTPAELVGK-FL-GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-DIHALAAKL 108
Query: 169 TCLGSATHLKSKSM------ALPVSGNDLGRGDPVRSELSRALNDGS--------GSGIR 214
T +K+K + A ++ + S L RA+ +G+ G G
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDK--KSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 215 NSARPEVSGFYN--ENIDGKNLTCMACHGALYSAINLSIEY-KVFSRCF----------T 261
+ E+ Y + G + A L I +++ KVF++
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAET--LSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 262 RSNGTRLVAVNIWAWRIIGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNLHPVPVSL 321
+ L+++ I + +IG + +A Y V ++ P +
Sbjct: 225 TPDKDYLLSIPI-SCPLIG--VIQLAH-------------YVVTAK---LLGFTPGEL-- 263
Query: 322 EEDDVRKERERVE----HGADSGDVLVVKRL---------FKIYANSKGTKPAVNQISFG 368
R ++ H LV F + + + A+ + F
Sbjct: 264 --------RSYLKGATGHSQG----LVTAVAIAETDSWESF--FVSVRK---AI-TVLFF 305
Query: 369 VG-RG-ECFGLLGL----------NGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMD 415
+G R E + L N G + ML SI + + +
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSP--ML----------------SISNLTQE 347
Query: 416 LVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN---ESLNKFALGHYSD 472
V+ Y+ + N L + +E + N N +V+ +SL L +
Sbjct: 348 QVQDYV------NKTNSHLPAGKQVEIS--LVNGAK---NLVVSGPPQSLYGLNL---TL 393
Query: 473 REVRTLSGGN-------KRKLSTAIALL--GNP---PLIFLDEPTSGM--DPGARRFLWT 518
R+ + SG + +RKL + L +P L L + + D +
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL--LVPASDLINKDLVKNNVSF- 450
Query: 519 CIERAVSEGRC-VILTS--HNMEEC-----EALCTKLTIM-VNGQFTCLGSATHL 564
+ + V T ++ E + + + V + T ATH+
Sbjct: 451 ----NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Score = 47.4 bits (112), Expect = 1e-05
Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 53/200 (26%)
Query: 41 DALNDRLTPREHLEFYSRVRNVPSVLLNTIVN---ESLNKFALGHYSDREVRTLSGGN-- 95
+ N L + +E + N N +V+ +SL L + R+ + SG +
Sbjct: 354 NKTNSHLPAGKQVEIS--LVNGAK---NLVVSGPPQSLYGLNL---TLRKAKAPSGLDQS 405
Query: 96 -----KRKLSTAIALL--GNP---PLIFLDEPTSGM--DPGARRFLWTCIERAVSEGRC- 142
+RKL + L +P L L + + D + + +
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHL--LVPASDLINKDLVKNNVSF-----NAKDIQIP 458
Query: 143 VILTS--HNMEEC-----EALCTKLTIM-VNGQFTCLGSATHLKSKSMALPVSGNDLGRG 194
V T ++ E + + + V + T ATH+ L D G G
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI------L-----DFGPG 507
Query: 195 DPVR-SELSRALNDGSGSGI 213
L+ DG+G +
Sbjct: 508 GASGLGVLTHRNKDGTGVRV 527
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 58.9 bits (143), Expect = 3e-09
Identities = 46/211 (21%), Positives = 84/211 (39%), Gaps = 56/211 (26%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
S+ + ++ V G+ L+G +G GK+TT +++ P G + IR +
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT-I 457
Query: 415 DL--VRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSD 472
++ +R IG Q E VL T + E++ ++ +
Sbjct: 458 NVRYLREIIGVVSQ--------------E---------PVLFATTIAENI-RYGREDVTM 493
Query: 473 REVR----------------------------TLSGGNKRKLSTAIALLGNPPLIFLDEP 504
E+ LSGG K++++ A AL+ NP ++ LDE
Sbjct: 494 DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEA 553
Query: 505 TSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
TS +D + + +++A EGR I+ +H
Sbjct: 554 TSALDTESEAVVQAALDKA-REGRTTIVIAH 583
Score = 58.5 bits (142), Expect = 4e-09
Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 32/195 (16%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLVR 418
P + +S V +G+ L+G +G GK+T ++L P +G+ ++ I+ ++ +R
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106
Query: 419 SYIGYCPQ----FD---------ALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL-NK 464
+ +G Q FD N R+ E + ++ N + I +SL +K
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEAN----IHQFI--DSLPDK 1160
Query: 465 FALGHYSDREV----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCI 520
+ + V LSGG K++++ A AL+ P ++ LDE TS +D + + + +
Sbjct: 1161 Y------NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL 1214
Query: 521 ERAVSEGRCVILTSH 535
++A EGR I+ +H
Sbjct: 1215 DKA-REGRTCIVIAH 1228
Score = 47.0 bits (112), Expect = 1e-05
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
LSGG K++++ A AL+ NP ++ LDE TS +D + + +++A EGR I+ +H
Sbjct: 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA-REGRTTIVIAH 583
Score = 41.9 bits (99), Expect = 6e-04
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
LSGG K++++ A AL+ P ++ LDE TS +D + + + +++A EGR I+ +H
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAH 1228
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 55.7 bits (135), Expect = 8e-09
Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 22/186 (11%)
Query: 336 GADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGA 395
G+ ++ V +L K + G+ + I+ + GE ++G +G+GK+T + L
Sbjct: 18 GSHMLQMIDVHQLKKSF----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL 73
Query: 396 IKPTSGNAYVMNHSIRDS---MDLVRSYIGYC-------PQFDAL-NDRLTPREHLEFYS 444
G + +++ ++ VR +G P L N L P
Sbjct: 74 EDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPM------- 126
Query: 445 RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 504
+VR P E L+K L + +LSGG ++++ A AL P ++ DEP
Sbjct: 127 KVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 186
Query: 505 TSGMDP 510
TS +DP
Sbjct: 187 TSALDP 192
Score = 38.7 bits (91), Expect = 0.003
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 58 RVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEP 117
+VR P E L+K L + +LSGG ++++ A AL P ++ DEP
Sbjct: 127 KVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEP 186
Query: 118 TSGMDP 123
TS +DP
Sbjct: 187 TSALDP 192
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 55.7 bits (135), Expect = 2e-08
Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 51/183 (27%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-S 413
+ P + I+ + +GE +G++G GK+T ++ TSG + H+I+D
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL 409
Query: 414 MDLVRSYIGYCPQ----FDALNDRLTPRE-----------------------HLEFYSRV 446
+R+ IG Q F T +E H +F +
Sbjct: 410 TGSLRNQIGLVQQDNILFSD-----TVKENILLGRPTATDEEVVEAAKMANAH-DF---I 460
Query: 447 RNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
N+P +T V E R V+ LSGG K++LS A L NPP++ LDE TS
Sbjct: 461 MNLPQGY-DTEVGE------------RGVK-LSGGQKQRLSIARIFLNNPPILILDEATS 506
Query: 507 GMD 509
+D
Sbjct: 507 ALD 509
Score = 41.4 bits (98), Expect = 7e-04
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
LSGG K++LS A L NPP++ LDE TS +D
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALD 509
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 54.9 bits (133), Expect = 3e-08
Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 23/176 (13%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ ++ + K + G A+N I+ + GE LLG +G+GK+T + G KPTSG
Sbjct: 4 IKLENIVKKF----GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 403 AY----VMNH---SIRD-SMDLV-RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL 453
Y + R+ + V +++ AL +T +++ F +R P
Sbjct: 60 IYFDEKDVTELPPKDRNVGL--VFQNW--------ALYPHMTVYKNIAFPLELRKAPREE 109
Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
++ V E + +R LSGG +++++ A AL+ P ++ LDEP S +D
Sbjct: 110 IDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Score = 32.2 bits (74), Expect = 0.50
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 48 TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG 107
T +++ F +R P ++ V E + +R LSGG +++++ A AL+
Sbjct: 91 TVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK 150
Query: 108 NPPLIFLDEPTSGMD 122
P ++ LDEP S +D
Sbjct: 151 EPEVLLLDEPLSNLD 165
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 52.3 bits (126), Expect = 1e-07
Identities = 55/271 (20%), Positives = 102/271 (37%), Gaps = 51/271 (18%)
Query: 319 VSLE------EDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRG 372
V +E E+ + E+ + ++ S P + I+F + RG
Sbjct: 5 VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERG 64
Query: 373 ECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQ----FD 428
+ + G GAGKT+ M+ G ++P+ G I +C Q
Sbjct: 65 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK------------HSGRISFCSQNSWIMP 112
Query: 429 ALNDRLTPREHL-------EFYSRVRNVPSVLLNTIVNESLNKFALGHYSDR-EV--R-- 476
T +E++ Y V + E ++KFA D +
Sbjct: 113 G-----TIKENIIGVSYDEYRYRSVIKACQLE------EDISKFAEK---DNIVLGEGGI 158
Query: 477 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSH 535
TLSGG + ++S A A+ + L LD P +D + ++ C+ + ++ + IL +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRILVTS 217
Query: 536 NMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
ME + K+ I+ G G+ + L++
Sbjct: 218 KMEHLKK-ADKILILHEGSSYFYGTFSELQN 247
Score = 37.7 bits (88), Expect = 0.007
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSH 148
TLSGG + ++S A A+ + L LD P +D + ++ C+ + ++ + IL +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRILVTS 217
Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMAL 184
ME + K+ I+ G G+ + L++
Sbjct: 218 KMEHLKK-ADKILILHEGSSYFYGTFSELQNLRPDF 252
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 51.1 bits (123), Expect = 5e-07
Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 23/176 (13%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ ++ L K + G AVN+++ + GE LLG +G GKTTT +M+ G +PT G
Sbjct: 12 VKLENLTKRF----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 403 AY----VMNH---SIRD-SMDLV-RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL 453
Y + + R+ SM V +SY A+ +T E++ F +++ P
Sbjct: 68 IYFGDRDVTYLPPKDRNISM--VFQSY--------AVWPHMTVYENIAFPLKIKKFPKDE 117
Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
++ V + + +R LSGG +++++ A A++ P ++ +DEP S +D
Sbjct: 118 IDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
Score = 30.3 bits (69), Expect = 1.7
Identities = 18/75 (24%), Positives = 39/75 (52%)
Query: 48 TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG 107
T E++ F +++ P ++ V + + +R LSGG +++++ A A++
Sbjct: 99 TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV 158
Query: 108 NPPLIFLDEPTSGMD 122
P ++ +DEP S +D
Sbjct: 159 EPDVLLMDEPLSNLD 173
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 49.8 bits (120), Expect = 7e-07
Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 47/203 (23%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL--V 417
+ ++F + G+ L+G NG+GK+T +L +PT G + + D +
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQ-YDHHYL 91
Query: 418 RSYIGYCPQ----FDALNDRLTPREHLEFYSRVRNVP-----------------SVL--- 453
+ + Q F + RE++ Y R S
Sbjct: 92 HTQVAAVGQEPLLFGR-----SFRENIA-YGLTRTPTMEEITAVAMESGAHDFISGFPQG 145
Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
+T V E + LSGG ++ ++ A AL+ P L+ LD TS +D G +
Sbjct: 146 YDTEVGE------------TGNQ-LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 514 RFLWTCIERAVSE-GRCVILTSH 535
+ + + R V+L +
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQ 215
Score = 39.8 bits (94), Expect = 0.001
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH 148
LSGG ++ ++ A AL+ P L+ LD TS +D G + + + + R V+L +
Sbjct: 156 QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 7e-07
Identities = 85/553 (15%), Positives = 177/553 (32%), Gaps = 170/553 (30%)
Query: 26 TIDKNLSYIGYCPQFDAL-ND----------RLTP----REHLEFYSRVRNVPSVLLN-- 68
++ Y Q D L ND RL P R+ L +R +VL++
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL---ELRPAKNVLIDGV 158
Query: 69 ------TIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
+ + + + D ++ L+ N T + +L TS D
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 123 PGA-------------RRFL---------------WTCIERAVS--EGRC-VILTSHNME 151
+ RR L +A + C ++LT+ +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFNLSCKILLTTRFKQ 276
Query: 152 ECEALCTKLTIMVNGQFTCLGSATHLKSKSM---ALPVSGNDLGR----GDP-VRSELSR 203
+ L T ++ + T + KS+ L DL R +P S ++
Sbjct: 277 VTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 204 ALNDGSGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEY-------KVF 256
++ DG A + + K++ C L + I S+ K+F
Sbjct: 336 SIRDGL-------ATWD---NW------KHVNCDK----LTTIIESSLNVLEPAEYRKMF 375
Query: 257 SRC--FTRSNGTRLVAVNI--------WAWRIIGKNLTCMACHGALYSAINLSIEYKVFS 306
R F S +I W + +I ++ + YS + + S
Sbjct: 376 DRLSVFPPS-------AHIPTILLSLIW-FDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 307 RCFTRSNLHPVPVSLE---EDDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVN 363
+ + + L+ E++ R V+H + K + + P ++
Sbjct: 428 -------IPSIYLELKVKLENEYALHRSIVDH----------YNIPKTFDSDDLIPPYLD 470
Query: 364 QISF--------GVGRGE---CFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD 412
Q + + E F ++ L+ F+ L I+ A+ + SI +
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLD-------FRFLEQKIRHD-STAWNASGSILN 522
Query: 413 SMDLVRSYIGY----CPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT----IVNESLNK 464
++ ++ Y Y P+++ L + + L+F + + L+ + ++ +L
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAI-----LDF---LPKIEENLICSKYTDLLRIALMA 574
Query: 465 FALGHYSD--REV 475
+ + ++V
Sbjct: 575 EDEAIFEEAHKQV 587
Score = 45.2 bits (106), Expect = 6e-05
Identities = 45/337 (13%), Positives = 96/337 (28%), Gaps = 92/337 (27%)
Query: 232 KNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGA 291
N C S ++ E +GT + W + +
Sbjct: 31 DNFDCKDVQDMPKSILS-KEEIDHIIMSKDAVSGTLRL---FWTLLSKQEEMVQKFVEEV 86
Query: 292 -------LYSAINL-----SIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEHGADS 339
L S I S+ +++ R L+ + +V R++
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQ--RDRLYNDNQVFAKYNV----SRLQP---- 136
Query: 340 GDVLVVKR-LFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-- 396
L +++ L ++ +PA N + GV G+GKT + +
Sbjct: 137 --YLKLRQALLEL-------RPAKNVLIDGVL-----------GSGKTW----VALDVCL 172
Query: 397 -----KPTSGNAYVMN----HSIRDSMD-LVRSYIGYCPQFDALNDRLTP--------RE 438
+ +N +S ++ L + P + + +D + +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 439 HLEFYSRVRNVPSVLLNTIV-----NESLNKFALGHYSDREVRTL--SGGNKRKLSTAIA 491
L + + + LL ++ ++ N F L + L + R
Sbjct: 233 ELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLS------CKILLTT----RFKQVTDF 280
Query: 492 LLGNPPL-IFLDEPTSGMDPG-ARRFLWTCIERAVSE 526
L I LD + + P + L ++ +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 49.9 bits (120), Expect = 1e-06
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 29/182 (15%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ + ++K++ G AV ++S V GE LLG +G GKTTT +M+ G +P+ G
Sbjct: 4 VRLVDVWKVF----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 403 AY----VMNHSI---------RD-SMDLV-RSYIGYCPQFDALNDRLTPREHLEFYSRVR 447
Y ++ RD +M V +SY AL +T +++ F ++R
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAM--VFQSY--------ALYPHMTVYDNIAFPLKLR 109
Query: 448 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 507
VP ++ V E L +R+ R LSGG +++++ A++ P + +DEP S
Sbjct: 110 KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 508 MD 509
+D
Sbjct: 170 LD 171
Score = 28.7 bits (65), Expect = 5.7
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 48 TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG 107
T +++ F ++R VP ++ V E L +R+ R LSGG +++++ A++
Sbjct: 97 TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR 156
Query: 108 NPPLIFLDEPTSGMD 122
P + +DEP S +D
Sbjct: 157 KPQVFLMDEPLSNLD 171
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 49.9 bits (120), Expect = 1e-06
Identities = 60/177 (33%), Positives = 86/177 (48%), Gaps = 25/177 (14%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ V L K + G AV+ +SF V GE LLG +G GKTTT ML G KPTSG
Sbjct: 4 IRVVNLKKYF----GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 403 AY----VMNH---SIRD-SMDLV-RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL 453
Y ++N R+ M V ++Y AL +T E++ F R R +
Sbjct: 60 IYFDDVLVNDIPPKYREVGM--VFQNY--------ALYPHMTVFENIAFPLRARRISKDE 109
Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFL-DEPTSGMD 509
+ V E K + + DR+ LSGG +++++ A AL+ P + L DEP S +D
Sbjct: 110 VEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPK-VLLFDEPLSNLD 165
Score = 30.6 bits (70), Expect = 1.5
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 48 TPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLG 107
T E++ F R R + + V E K + + DR+ LSGG +++++ A AL+
Sbjct: 91 TVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK 150
Query: 108 NPPLIFL-DEPTSGMD 122
P + L DEP S +D
Sbjct: 151 QPK-VLLFDEPLSNLD 165
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 48.3 bits (116), Expect = 2e-06
Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 48/225 (21%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN-------AYV-- 405
+G P + I+F + RG+ + G GAGKT+ M+ G ++P+ G ++
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQ 76
Query: 406 ----MNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
M +I+++ I + +D Y V + E
Sbjct: 77 FSWIMPGTIKEN-------IIFGVSYDE-----------YRYRSVIKACQLE------ED 112
Query: 462 LNKFALGHYSDR-EV--R--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
++KFA D + TLSGG + ++S A A+ + L LD P +D + +
Sbjct: 113 ISKFAEK---DNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 169
Query: 517 WT-CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
+ C+ + ++ + IL + ME + K+ I+ G G+
Sbjct: 170 FESCVCKLMA-NKTRILVTSKMEHLKK-ADKILILHEGSSYFYGT 212
Score = 36.4 bits (85), Expect = 0.015
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSH 148
TLSGG + ++S A A+ + L LD P +D + ++ C+ + ++ + IL +
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRILVTS 188
Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMAL 184
ME + K+ I+ G G+ + L++
Sbjct: 189 KMEHLKK-ADKILILHEGSSYFYGTFSELQNLQPDF 223
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 49.5 bits (118), Expect = 2e-06
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 72 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL-------LGNPPLIFLDEPTSGMDPG 124
+ + LSGG + ++ ++ L I LDEPT +D
Sbjct: 262 TKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDEN 321
Query: 125 ARRFLWTCIERAVSEGRCVILTSHNME 151
R L + V +I+ +H+ E
Sbjct: 322 RRAKLAEIFRK-VKSIPQMIIITHHRE 347
Score = 49.5 bits (118), Expect = 2e-06
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIAL-------LGNPPLIFLDEPTSGMDPG 511
+ + LSGG + ++ ++ L I LDEPT +D
Sbjct: 262 TKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDEN 321
Query: 512 ARRFLWTCIERAVSEGRCVILTSHNME 538
R L + V +I+ +H+ E
Sbjct: 322 RRAKLAEIFRK-VKSIPQMIIITHHRE 347
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 49.1 bits (118), Expect = 2e-06
Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 36/172 (20%)
Query: 360 PAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDL--V 417
P S + G L+G +G+GK+T +L P SG + H IR ++ +
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ-LNPVWL 416
Query: 418 RSYIGYCPQ----FDA----------LNDRLTPREHLEFYSRVRNVPSVL------LNTI 457
RS IG Q F + E ++ + V N + + NT+
Sbjct: 417 RSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTV 476
Query: 458 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
V E + V LSGG K++++ A ALL NP ++ LDE TS +D
Sbjct: 477 VGE------------KGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALD 515
Score = 36.8 bits (86), Expect = 0.018
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
LSGG K++++ A ALL NP ++ LDE TS +D
Sbjct: 483 LLSGGQKQRIAIARALLKNPKILLLDEATSALD 515
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 48.3 bits (116), Expect = 5e-06
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-S 413
+ T P ++ ++F V G +LG G+GK+T ++ I P G V +R
Sbjct: 352 FENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK 411
Query: 414 MDLVRSYIGYCPQ 426
+ +R +I PQ
Sbjct: 412 LKDLRGHISAVPQ 424
Score = 32.1 bits (74), Expect = 0.50
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
SGG K++LS A AL+ P ++ LD+ TS +D
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
Score = 32.1 bits (74), Expect = 0.50
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 478 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
SGG K++LS A AL+ P ++ LD+ TS +D
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 46.4 bits (110), Expect = 1e-05
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 86 REVRTLSGGNKRKLSTAIAL----LGNPPL--IFLDEPTSGMDPGARRFLWTCIERAVSE 139
R R LSGG + +S ++A+ + + L F+DE S +D + + + ++
Sbjct: 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL 334
Query: 140 GRCVILTSH 148
+ ++ +H
Sbjct: 335 NKVIVFITH 343
Score = 46.4 bits (110), Expect = 1e-05
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 473 REVRTLSGGNKRKLSTAIAL----LGNPPL--IFLDEPTSGMDPGARRFLWTCIERAVSE 526
R R LSGG + +S ++A+ + + L F+DE S +D + + + ++
Sbjct: 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL 334
Query: 527 GRCVILTSH 535
+ ++ +H
Sbjct: 335 NKVIVFITH 343
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 45.2 bits (108), Expect = 2e-05
Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 58/231 (25%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
++ P +N I+F + G ++G G GK++ L + G+
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA---------- 63
Query: 415 DLVRSYIGYCPQ----FDALNDRLTPRE--------HLEFYSRVRNVPSVLLNTIVNESL 462
++ + Y PQ + + RE +Y V +
Sbjct: 64 --IKGSVAYVPQQAWIQND-----SLRENILFGCQLEEPYYRSV---------------I 101
Query: 463 NKFALGH------YSDR-EV--R--TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPG 511
AL DR E+ + LSGG K+++S A A+ N + D+P S +D
Sbjct: 102 QACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 161
Query: 512 ARRFLWT-CI-ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGS 560
+ ++ I + + + + IL +H+M + +M G+ + +GS
Sbjct: 162 VGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQ-VDVIIVMSGGKISEMGS 211
Score = 36.0 bits (84), Expect = 0.021
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CI-ERAVSEGRCVILTS 147
LSGG K+++S A A+ N + D+P S +D + ++ I + + + + IL +
Sbjct: 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 148 HNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMAL 184
H+M + +M G+ + +GS L ++ A
Sbjct: 187 HSMSYLPQ-VDVIIVMSGGKISEMGSYQELLARDGAF 222
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 44.5 bits (106), Expect = 4e-05
Identities = 42/192 (21%), Positives = 71/192 (36%), Gaps = 34/192 (17%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
L V L K Y G + +S G+ ++G +G+GK+T + + KP+ G
Sbjct: 6 KLHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG 61
Query: 402 NAYVMNHSIRDS--------------MDLVRSYIGYC-------PQFDAL-NDRLTPREH 439
V +I + L+R+ + L N P
Sbjct: 62 AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI-- 119
Query: 440 LEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV-RTLSGGNKRKLSTAIALLGNPPL 498
+V + + L K + + + LSGG ++++S A AL P +
Sbjct: 120 -----QVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDV 174
Query: 499 IFLDEPTSGMDP 510
+ DEPTS +DP
Sbjct: 175 LLFDEPTSALDP 186
Score = 36.8 bits (86), Expect = 0.013
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 75 LNKFALGHYSDREV-RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDP 123
L K + + + LSGG ++++S A AL P ++ DEPTS +DP
Sbjct: 137 LAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP 186
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 39.5 bits (93), Expect = 0.003
Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 45/176 (25%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
KP + I+F + G+ L+G G+GKTT +L G V IR +
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 418 RSYIGYCPQ----FDALNDRLTPREHLEFYSR--------------------VRNVPSVL 453
RS IG Q F T +E+L+ Y ++++P
Sbjct: 428 RSSIGIVLQDTILFST-----TVKENLK-YGNPGATDEEIKEAAKLTHSDHFIKHLPEGY 481
Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 509
T++ + LS G ++ L+ A L NP ++ LDE TS +D
Sbjct: 482 -ETVLTD-------------NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
Score = 33.3 bits (77), Expect = 0.21
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMD 122
LS G ++ L+ A L NP ++ LDE TS +D
Sbjct: 491 DLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 37.4 bits (87), Expect = 0.011
Identities = 40/197 (20%), Positives = 78/197 (39%), Gaps = 35/197 (17%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-S 413
++G + ISF + G+ GLLG G+GK+T + T G + S +
Sbjct: 30 TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-LLNTEGEIQIDGVSWDSIT 88
Query: 414 MDLVRSYIGYCPQ---------------FDALNDRL--TPREHLEFYSRVRNVPSVLLNT 456
++ R G PQ A +D+ + + S + P L
Sbjct: 89 LEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFV 148
Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
+V+ LS G+K+ + A ++L ++ LDEP++ +DP + +
Sbjct: 149 LVDGGCV--------------LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQII 194
Query: 517 WTCIERAVSEGRCVILT 533
+++A ++ C ++
Sbjct: 195 RRTLKQAFAD--CTVIL 209
Score = 31.6 bits (72), Expect = 0.61
Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 91 LSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILT 146
LS G+K+ + A ++L ++ LDEP++ +DP + + +++A ++ C ++
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFAD--CTVIL 209
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 34.7 bits (80), Expect = 0.036
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 377 LLGLNGAGKTTTFKMLTG----AIKPTSGN 402
+ G +GKT+ +LT +
Sbjct: 53 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEP 82
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 34.7 bits (80), Expect = 0.047
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 377 LLGLNGAGKTTTFKMLT-GAIKPT 399
+ G +GKT+ +LT +++PT
Sbjct: 17 IAGPQNSGKTSLLTLLTTDSVRPT 40
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.13
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 7/24 (29%)
Query: 345 VKRL---FKIYANSKGTKP--AVN 363
+K+L K+YA+ + P A+
Sbjct: 22 LKKLQASLKLYAD--DSAPALAIK 43
Score = 31.5 bits (70), Expect = 0.34
Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 388 TFKMLTGAIK---PTSGNAYVMNHSI 410
K L ++K S A + ++
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATM 46
Score = 29.5 bits (65), Expect = 1.5
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 322 EEDDVRKERERVE-HGADSGDVLVVK 346
E+ ++K + ++ + DS L +K
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 33.2 bits (76), Expect = 0.16
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 377 LLGLNGAGKTTTFKML-TGAIKPTS 400
+GL +GKT F L TG + T
Sbjct: 12 FVGLCDSGKTLLFVRLLTGQYRDTQ 36
>1ft5_A Cytochrome C554; heme-stacking, electron transport; HET: HEM; 1.60A
{Nitrosomonas europaea} SCOP: a.138.1.3 PDB: 1bvb_A*
1ft6_A*
Length = 211
Score = 33.0 bits (73), Expect = 0.18
Identities = 8/55 (14%), Positives = 16/55 (29%)
Query: 235 TCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACH 289
C +CH A + + K + + ++ C+ CH
Sbjct: 10 KCSSCHKAQAQSWKDTAHAKAMESLKPNVKKEAKQKAKLDPAKDYTQDKDCVGCH 64
Score = 29.5 bits (64), Expect = 2.7
Identities = 8/77 (10%), Positives = 17/77 (22%), Gaps = 3/77 (3%)
Query: 213 IRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVN 272
+ + + + C +CHG + + +
Sbjct: 65 VDGFGQKGGYTIESPKPMLTGVGCESCHGPGRNFRGDHRKSGQAFEKSGKKTPR---KDL 121
Query: 273 IWAWRIIGKNLTCMACH 289
+ C ACH
Sbjct: 122 AKKGQDFHFEERCSACH 138
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 32.9 bits (76), Expect = 0.24
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 31/180 (17%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ ++ + K + G I+ + GE +G +G GK+T +M+ G TSG+
Sbjct: 4 VQLQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 403 AY----VMNH---SIRD-SMDLV-RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL 453
+ MN + R M V +SY AL L+ E++ F ++ +
Sbjct: 60 LFIGEKRMNDTPPAERGVGM--VFQSY--------ALYPHLSVAENMSFGLKLAGAKKEV 109
Query: 454 LNTIVNESLNKFALGHYSDREVRTLSGGNK-RKLSTAI--ALLGNPPLIFL-DEPTSGMD 509
+N VN+ L H DR+ + LSGG + R AI L+ P +FL DEP S +D
Sbjct: 110 INQRVNQVAEVLQLAHLLDRKPKALSGGQRQR---VAIGRTLVAEPS-VFLLDEPLSNLD 165
>1sp3_A Cytochrome C, putative; octaheme, oxidoreductase; HET: HEM; 2.20A
{Shewanella oneidensis} SCOP: a.138.1.3
Length = 443
Score = 32.0 bits (71), Expect = 0.50
Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 235 TCMACHGALYSAINLSIEYKVFSRCFTRSNGTRL---VAVNIWAWRIIGKNLTCMACHG 290
C+ CH + + + + ++N + I C +CH
Sbjct: 21 QCLTCHEEQATDMMKTSHWTWELEQKLPDRTVVRGKKNSINNFCVAISSNEPRCTSCHA 79
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 31.1 bits (71), Expect = 0.65
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 377 LLGLNGAGKTTTFKML----TGAIKPTSG 401
LGL+ AGKTT ML G PT
Sbjct: 30 FLGLDNAGKTTLLHMLKDDRLGQHVPTLH 58
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 31.0 bits (71), Expect = 0.78
Identities = 49/215 (22%), Positives = 72/215 (33%), Gaps = 59/215 (27%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP----TSGNAYVMNHSIRD 412
K + +S V GE ++G NG+GK+T L G + T G +
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG--REDYEVTGGTVEFKGKDLLA 88
Query: 413 SMDL-VRSYIG------YCP---------QF--DALNDR-----LTPREHLEFYSRVR-- 447
+ R+ G Y P F ALN + +F +
Sbjct: 89 -LSPEDRAGEGIFMAFQY-PVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 146
Query: 448 ----NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAI---ALLGNPPLIF 500
+P LL VN F SGG K++ I A+L P L
Sbjct: 147 IALLKMPEDLLTRSVNVG---F-------------SGGEKKR--NDILQMAVL-EPELCI 187
Query: 501 LDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 535
LDE SG+D A + + + R I+ +H
Sbjct: 188 LDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 30.6 bits (70), Expect = 0.82
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 377 LLGLNGAGKTTTFKMLTG----AIKPTSG 401
LGL+ AGKTT ML ++PT
Sbjct: 28 FLGLDNAGKTTLLHMLKNDRLATLQPTWH 56
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 31.3 bits (71), Expect = 0.97
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGN---AYVMN 407
L+G G GKT T+K + A+ G+ YV++
Sbjct: 928 LVGKAGCGKTATWKTVIDAMAIFDGHANVVYVID 961
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 30.3 bits (69), Expect = 1.0
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 377 LLGLNGAGKTTTFKMLTG----AIKPTSG 401
++GL+ AGKTT + PT G
Sbjct: 26 IVGLDNAGKTTILYQFSMNEVVHTSPTIG 54
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 30.2 bits (69), Expect = 1.1
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 377 LLGLNGAGKTTTFKMLTG----AIKPTSG 401
LLGL+ AGKTT K L I PT G
Sbjct: 21 LLGLDNAGKTTLLKQLASEDISHITPTQG 49
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 30.3 bits (69), Expect = 1.1
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 377 LLGLNGAGKTTTFKMLTG----AIKPTSG 401
+LGL+ AGKTT K G I PT G
Sbjct: 23 MLGLDNAGKTTILKKFNGEDVDTISPTLG 51
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 30.2 bits (69), Expect = 1.4
Identities = 46/210 (21%), Positives = 75/210 (35%), Gaps = 53/210 (25%)
Query: 357 GTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKP----TSGNAYVMNHSIRD 412
+ + ++ V +GE L+G NGAGK+T K+L G P G + +I +
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVERGEILLDGENILE 71
Query: 413 SMDLVRSYIG------YCP---------QF--DALND-RLTPREHLEFYSRVR------N 448
R+ G Y P F AL EF+++V+ +
Sbjct: 72 LSPDERARKGLFLAFQY-PVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLD 130
Query: 449 VPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAI---ALLGNPPLIFLDEPT 505
L+ +NE F SGG K++ I +L P LDE
Sbjct: 131 WDESYLSRYLNEG---F-------------SGGEKKR--NEILQLLVL-EPTYAVLDETD 171
Query: 506 SGMDPGARRFLWTCIERAVSEGRCVILTSH 535
SG+D A + + + ++ +H
Sbjct: 172 SGLDIDALKVVARGVNAMRGPNFGALVITH 201
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 30.4 bits (69), Expect = 1.5
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 377 LLGLNGAGKTTT 388
L G GAGKTTT
Sbjct: 110 LFGSTGAGKTTT 121
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 29.5 bits (67), Expect = 1.6
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 377 LLGLNGAGKTTT-FKMLTG---AIKPTSG 401
++GL+ AGKTT +K+ G PT G
Sbjct: 5 MVGLDAAGKTTILYKLKLGEIVTTIPTIG 33
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio
vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E*
2dvh_A*
Length = 79
Score = 28.0 bits (63), Expect = 1.7
Identities = 8/15 (53%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 230 DGKNL--TCMACHGA 242
DG L +C+ CHGA
Sbjct: 2 DGAALYKSCVGCHGA 16
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 29.5 bits (67), Expect = 1.8
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 377 LLGLNGAGKTTT-FKMLTGAIK---PTSG 401
+LGL+GAGKTT +++ G + PT G
Sbjct: 12 ILGLDGAGKTTILYRLQVGEVVTTIPTIG 40
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 29.5 bits (67), Expect = 1.9
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 377 LLGLNGAGKTTT-FKMLTG---AIKPTSG 401
+LGL+GAGKTT +++ G KPT G
Sbjct: 23 ILGLDGAGKTTILYRLQIGEVVTTKPTIG 51
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 29.5 bits (67), Expect = 2.0
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 377 LLGLNGAGKTTTFKMLTG----AIKPTSG 401
++GL+ AGKTT + PT G
Sbjct: 21 IVGLDNAGKTTILYQFSMNEVVHTSPTIG 49
>3bnj_A Cytochrome C-552; C-type cytochrome, nitrite reductase, sulfite
complex, calcium, electron transport, heme, iron,
metal-binding; HET: HEM; 1.30A {Wolinella succinogenes}
PDB: 3bnh_A* 3bng_A* 1fs9_A* 1fs7_A* 1fs8_A* 2e80_A*
2e81_A* 3bnf_A* 1qdb_A*
Length = 485
Score = 30.2 bits (67), Expect = 2.0
Identities = 12/101 (11%), Positives = 25/101 (24%), Gaps = 7/101 (6%)
Query: 235 TCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALYS 294
C CH + L + R + + + ++L C CH Y
Sbjct: 145 GCYNCHDD--KSAELKSKVPYLDRGLSAAGFKTFAE----STHQEKRSLVCAQCHVEFYF 198
Query: 295 AINLSIEYKVFSRCFTRSNLHPVPVSLEEDDVRKERERVEH 335
+ K P + + + + +
Sbjct: 199 KKTEWKDDKGVD-KTAMVVTLPWSKGISTEQMEAYYDEINF 238
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 29.5 bits (67), Expect = 2.0
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 377 LLGLNGAGKTTTFKMLTG----AIKPTSG 401
+LGL+ AGKT+ L PT G
Sbjct: 27 MLGLDNAGKTSILYRLHLGDVVTTVPTVG 55
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein
transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Length = 320
Score = 29.8 bits (68), Expect = 2.2
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 324 DDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGA 383
+ VRK+ +R + D LV + L++ Y ++ T +I F R F L+G+NG
Sbjct: 59 NLVRKKTKRDTSFENIKDALV-ESLYQAYTDNDWTNKK-YRIDFKENRLNIFMLVGVNGT 116
Query: 384 GKTTT 388
GKTT+
Sbjct: 117 GKTTS 121
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 29.2 bits (66), Expect = 2.3
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 377 LLGLNGAGKTTT-FKMLTG---AIKPTSG 401
++GL+ AGKTT +K+ G PT G
Sbjct: 34 MVGLDAAGKTTILYKLKLGEIVTTIPTIG 62
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 29.2 bits (65), Expect = 3.0
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 15/100 (15%)
Query: 377 LLGLNGAGKTTTFKML--------TGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFD 428
L+GL +GK++ K++ T ++ T+ + + V I P
Sbjct: 25 LMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK----IYKDDISNSSFVNFQIWDFPGQM 80
Query: 429 ALNDRLTPREHLEFYSRVRNVPSVL-LNTIVNESLNKFAL 467
D E + + V+ E+L + +
Sbjct: 81 DFFDPTFDYEM--IFRGTGALIYVIDAQDDYMEALTRLHI 118
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 29.8 bits (67), Expect = 3.0
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 379 GLNGAGKTTT 388
G+NG GKTTT
Sbjct: 300 GVNGVGKTTT 309
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase;
2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2
b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A*
1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A*
1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Length = 585
Score = 29.7 bits (67), Expect = 3.1
Identities = 29/125 (23%), Positives = 44/125 (35%), Gaps = 33/125 (26%)
Query: 405 VMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 464
VMN+ R+S ++R + + + LT Y L N + +
Sbjct: 371 VMNYLFRES--VIRFFATGEIHAERFDAELT--RARMLYPE--QAAQGLWNLLDS----- 419
Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALL----GNPPLIFL---DEPTSGM----DPGAR 513
H ++R T GGN+ K A+ G P + DE GM DP
Sbjct: 420 ----HDTER-FLTSCGGNEAKFRLAVLFQMTYLGTP---LIYYGDE--IGMAGATDPDCL 469
Query: 514 R-FLW 517
R +W
Sbjct: 470 RPMIW 474
>3ouq_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens, cytochrome
C7 (C3) fold; HET: HEM; 2.60A {Geobacter sulfurreducens}
Length = 161
Score = 28.9 bits (63), Expect = 3.1
Identities = 16/98 (16%), Positives = 24/98 (24%), Gaps = 24/98 (24%)
Query: 229 IDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMAC 288
+ N C CH AL F R +++ K +C AC
Sbjct: 24 LKKYNNNCRICHIAL----------------FDLRKPKRYTMLDME------KGKSCGAC 61
Query: 289 HGALYSAINLSIEYKVFSRCFTRSNLHPVPVSLEEDDV 326
H + RC + S +
Sbjct: 62 HTG--MKAFSVADDSQCVRCHSGSARPVAYRMKGAGEA 97
>2j7a_A Cytochrome C nitrite reductase NRFA; cytochrome C nitrite
reductase, NRFA, NAPC/NIRT family, membrane complex,
oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio
vulgaris} PDB: 2vr0_A*
Length = 500
Score = 29.6 bits (65), Expect = 3.2
Identities = 7/67 (10%), Positives = 13/67 (19%), Gaps = 9/67 (13%)
Query: 225 YNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLT 284
G TC C +++ + + +
Sbjct: 112 RYAEKGGLPATCWNCKTPKMMEWVKESGDGFWAKDVNEFRDKIDMKDH---------TIG 162
Query: 285 CMACHGA 291
C CH
Sbjct: 163 CATCHDP 169
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 29.2 bits (66), Expect = 3.5
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 324 DDVRKE--RERVEHGADSGDVL---VVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLL 378
+ ++++ ++V G D G ++ V + + +I + + + + +
Sbjct: 78 EKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEIL--ETSRRIDLIEEIRKAEKPYVIMFV 135
Query: 379 GLNGAGKTTT 388
G NG+GKTTT
Sbjct: 136 GFNGSGKTTT 145
>1z1n_X Sixteen heme cytochrome; electron transport; HET: NAG NAA HEC;
2.10A {Desulfovibrio gigas}
Length = 560
Score = 29.3 bits (63), Expect = 3.6
Identities = 11/65 (16%), Positives = 21/65 (32%)
Query: 231 GKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHG 290
G+ +C+ CH + + V S ++ + + C+ CH
Sbjct: 197 GEEGSCVYCHKQEPLPSPVQQDRVVPSTRDASHESCVNCHLSTRKAQTESGPVLCVGCHT 256
Query: 291 ALYSA 295
A A
Sbjct: 257 AEAQA 261
>1oah_A Cytochrome C nitrite reductase; nitrogen cycle, respiratory nitrite
ammonification; HET: HEM; 2.3A {Desulfovibrio
desulfuricans} SCOP: a.138.1.3
Length = 519
Score = 29.6 bits (65), Expect = 3.8
Identities = 15/74 (20%), Positives = 19/74 (25%), Gaps = 7/74 (9%)
Query: 220 EVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVNIWAWRII 279
E N + + C CH + L E RS R
Sbjct: 172 EFRAKDKINAHDETIGCANCHDPATMELRLYSEP--LKDWLKRSGKDWQKMS-----RNE 224
Query: 280 GKNLTCMACHGALY 293
+ L C CH Y
Sbjct: 225 KRTLVCAQCHVEYY 238
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 28.8 bits (65), Expect = 4.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Query: 377 LLGLNGAGKTTT-FKMLTG-----AIKPTSG 401
LGL+ +GKTT K+ I PT G
Sbjct: 26 CLGLDNSGKTTIINKLKPSNAQSQNILPTIG 56
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding,
signal recognition particle, GTP-binding, RNA-binding;
2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Length = 432
Score = 28.7 bits (65), Expect = 5.4
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 377 LLGLNGAGKTTT 388
L+G+ G+GKTTT
Sbjct: 104 LVGIQGSGKTTT 115
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition
particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A
{Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Length = 433
Score = 28.7 bits (65), Expect = 5.4
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 377 LLGLNGAGKTTT 388
L+G+ G+GKTTT
Sbjct: 102 LVGVQGSGKTTT 113
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M
domain, RNA-binding, signal sequence-binding,
helix-turn-helix, protein targeting; 3.20A {Thermus
aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB:
2iy3_A
Length = 425
Score = 28.6 bits (65), Expect = 5.6
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 377 LLGLNGAGKTTT 388
L+GL G+GKTTT
Sbjct: 103 LVGLQGSGKTTT 114
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 28.4 bits (64), Expect = 5.7
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 379 GLNGAGKTTT 388
G+NG GKTT+
Sbjct: 164 GVNGGGKTTS 173
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal
recognition particle, SRP-GTPase, protein targeting,
cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus
furiosus}
Length = 443
Score = 28.7 bits (65), Expect = 5.8
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 377 LLGLNGAGKTTT 388
++G+ G+GKTTT
Sbjct: 105 MVGIQGSGKTTT 116
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 28.7 bits (65), Expect = 5.8
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 379 GLNGAGKTTT 388
G+NG GKTTT
Sbjct: 109 GVNGVGKTTT 118
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 28.3 bits (64), Expect = 6.1
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 379 GLNGAGKTTT 388
G+NG GKTT+
Sbjct: 111 GVNGTGKTTS 120
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A
{Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB:
1j8y_F
Length = 297
Score = 28.3 bits (64), Expect = 6.2
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 377 LLGLNGAGKTTT 388
L+G+ G GKTTT
Sbjct: 103 LVGVQGTGKTTT 114
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC,
PCC, CT, carboxyltransfe polyketide, fatty acid, PKS,
FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A*
3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Length = 530
Score = 28.7 bits (65), Expect = 6.2
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 399 TSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458
TSG A+ M +D+++ V+ + Y P N+ P E L+TIV
Sbjct: 233 TSGVAHHMAGDEKDAVEYVKQLLSYLPS----NNLSEPPAFPEEADLAVTDEDAELDTIV 288
Query: 459 NESLNK 464
+S N+
Sbjct: 289 PDSANQ 294
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
translocation, GTP-binding, nucleotide-binding, protein
transport; 1.75A {Arabidopsis thaliana}
Length = 302
Score = 28.3 bits (64), Expect = 6.3
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 379 GLNGAGKTTT 388
G+NG GKTT+
Sbjct: 107 GVNGGGKTTS 116
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 28.7 bits (64), Expect = 6.5
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGN---AYVMN 407
++G +G GKTT++++ AI+ A+VM+
Sbjct: 911 MVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMD 944
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A
{Nitrosomonas europaea} SCOP: a.138.1.3
Length = 546
Score = 28.6 bits (62), Expect = 6.6
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 235 TCMACHGALYSAINLSIEYKV-FSRCFTRSNGTRLVAVNIWAWRIIGKNLTCMACHGALY 293
TC ACH +I K ++ + + R+ LTC CH +
Sbjct: 309 TCAACHMEYEGEYTHNITRKTRWANYPFVPGIAENITSDWSEARLDSWVLTCTQCHSERF 368
Query: 294 SAINLS 299
+ L
Sbjct: 369 ARSYLD 374
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 27.9 bits (63), Expect = 7.0
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 377 LLGLNGAGKTTT-FKMLTG----AIKPTSG 401
L+GL +GKTT + +G + PT G
Sbjct: 27 LVGLQYSGKTTFVNVIASGQFNEDMIPTVG 56
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 28.4 bits (64), Expect = 7.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 377 LLGLNGAGKTTT 388
+GL G+GKTTT
Sbjct: 106 FVGLQGSGKTTT 117
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
ultrahigh resolution, protein transport; 1.10A {Thermus
aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A
1ffh_A 2ng1_A*
Length = 295
Score = 27.9 bits (63), Expect = 8.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 377 LLGLNGAGKTTT 388
L+GL G+GKTTT
Sbjct: 103 LVGLQGSGKTTT 114
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA
binding protein, hydrolase, gtpas; HET: GCP; 3.94A
{Escherichia coli} PDB: 2j28_9
Length = 433
Score = 28.3 bits (64), Expect = 8.3
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 377 LLGLNGAGKTTT 388
+ GL GAGKTT+
Sbjct: 105 MAGLQGAGKTTS 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,448,250
Number of extensions: 515877
Number of successful extensions: 1629
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1547
Number of HSP's successfully gapped: 196
Length of query: 566
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 467
Effective length of database: 3,937,614
Effective search space: 1838865738
Effective search space used: 1838865738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.1 bits)