RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7366
(566 letters)
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 190 bits (484), Expect = 2e-57
Identities = 80/224 (35%), Positives = 114/224 (50%), Gaps = 4/224 (1%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+VVK L K G K + ISF + GE FGL+G NGAGKTTT ++++ IKP+SG
Sbjct: 3 VVVKDLRKRI----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
V ++ + VR I Y P+ + E+L F + S + +V +
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 118
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
LG V T S G RKL A AL+ NP L LDEPTSG+D R + +++
Sbjct: 119 EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 178
Query: 523 AVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
A EG ++++SHNM E E LC ++ ++ NG G+ LK
Sbjct: 179 ASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222
Score = 119 bits (299), Expect = 3e-31
Identities = 48/147 (32%), Positives = 71/147 (48%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
I Y P+ + E+L F + S + +V + LG V T S
Sbjct: 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSK 136
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEEC 153
G RKL A AL+ NP L LDEPTSG+D R + +++A EG ++++SHNM E
Sbjct: 137 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV 196
Query: 154 EALCTKLTIMVNGQFTCLGSATHLKSK 180
E LC ++ ++ NG G+ LK +
Sbjct: 197 EFLCDRIALIHNGTIVETGTVEELKER 223
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 174 bits (442), Expect = 2e-51
Identities = 56/221 (25%), Positives = 104/221 (47%), Gaps = 6/221 (2%)
Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
++ L K + G AVN+++ + GE LLG +G GKTTT +M+ G +PT G Y
Sbjct: 9 LENLTKRF----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 405 VMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 464
+ + R I Q A+ +T E++ F +++ P ++ V +
Sbjct: 65 FGDRDVTYLPPKDR-NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAEL 123
Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 524
+ +R LSGG +++++ A A++ P ++ +DEP S +D R + I++
Sbjct: 124 LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 183
Query: 525 SE-GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+ I +H+ E + ++ +M GQ +GS T +
Sbjct: 184 QKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224
Score = 117 bits (295), Expect = 1e-30
Identities = 32/146 (21%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 33 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
I Q A+ +T E++ F +++ P ++ V + + +R LS
Sbjct: 79 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLS 138
Query: 93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNME 151
GG +++++ A A++ P ++ +DEP S +D R + I++ + I +H+
Sbjct: 139 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 198
Query: 152 ECEALCTKLTIMVNGQFTCLGSATHL 177
E + ++ +M GQ +GS T +
Sbjct: 199 EAMTMGDRIAVMNRGQLLQIGSPTEV 224
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 164 bits (416), Expect = 1e-47
Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 6/227 (2%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
VL V+ L Y G A+ I V RG+ L+G NGAGKTTT + G ++ G
Sbjct: 6 VLEVQSLHVYY----GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61
Query: 402 NAYVMNHSIRDSMDLVRSYIGY--CPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVN 459
I + V + +G P+ + LT E+L + R + +
Sbjct: 62 KIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW 121
Query: 460 ESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTC 519
L + TLSGG ++ L+ AL+ P L+ +DEP+ G+ P ++
Sbjct: 122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV 181
Query: 520 IERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
I++ EG ++L N + ++ GQ G A+ L
Sbjct: 182 IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
Score = 105 bits (263), Expect = 3e-26
Identities = 35/156 (22%), Positives = 60/156 (38%)
Query: 24 NPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHY 83
P N I P+ + LT E+L + R + + L
Sbjct: 73 KPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER 132
Query: 84 SDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 143
+ TLSGG ++ L+ AL+ P L+ +DEP+ G+ P ++ I++ EG +
Sbjct: 133 LKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTI 192
Query: 144 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 179
+L N + ++ GQ G A+ L
Sbjct: 193 LLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 163 bits (415), Expect = 2e-47
Identities = 54/236 (22%), Positives = 96/236 (40%), Gaps = 19/236 (8%)
Query: 341 DVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTS 400
++L + + K + G A++ +S V +G+ ++G NG+GK+T ++TG +K
Sbjct: 3 EILRTENIVKYF----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE 58
Query: 401 GNAYVMNHSIRDSM--DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVL----- 453
G Y N I + +L I Q +T E+L +
Sbjct: 59 GRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYK 118
Query: 454 --------LNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPT 505
+ + L L H DR+ LSGG + + AL+ NP +I +DEP
Sbjct: 119 KWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPI 178
Query: 506 SGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSA 561
+G+ PG ++ + ++G ++ H ++ L +M NGQ G
Sbjct: 179 AGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234
Score = 99.3 bits (247), Expect = 5e-24
Identities = 29/115 (25%), Positives = 50/115 (43%)
Query: 71 VNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLW 130
+ L L H DR+ LSGG + + AL+ NP +I +DEP +G+ PG ++
Sbjct: 131 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 190
Query: 131 TCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKSMALP 185
+ ++G ++ H ++ L +M NGQ G ++ P
Sbjct: 191 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDP 245
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 161 bits (409), Expect = 1e-46
Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 5/227 (2%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ + + K++ T A+N +S V G+ +G++G +GAGK+T + + +PT G+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 403 AYVMNHSI----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458
V + + R IG Q L T ++ + N P + V
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
E L+ LG D LSGG K++++ A AL NP ++ DE TS +DP R +
Sbjct: 122 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 519 CIERAV-SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
++ G ++L +H M+ + +C + ++ NG+ + + +
Sbjct: 182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
Score = 102 bits (256), Expect = 2e-25
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
IG Q L T ++ + N P + V E L+ LG D LSG
Sbjct: 84 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSG 143
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV-SEGRCVILTSHNMEE 152
G K++++ A AL NP ++ DE TS +DP R + ++ G ++L +H M+
Sbjct: 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDV 203
Query: 153 CEALCTKLTIMVNGQFTCLGSATHL 177
+ +C + ++ NG+ + + +
Sbjct: 204 VKRICDCVAVISNGELIEQDTVSEV 228
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 154 bits (391), Expect = 7e-44
Identities = 50/238 (21%), Positives = 98/238 (41%), Gaps = 20/238 (8%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L V L K Y G + +S G+ ++G +G+GK+T + + KP+ G
Sbjct: 3 LHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 403 AYVMNHSI--------------RDSMDLVRSYIGYCPQFDALNDRLTPREH-LEFYSRVR 447
V +I ++ + L+R+ + Q L +T E+ +E +V
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 448 NVPSVLLNTIVNESLNKFALGH-YSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTS 506
+ + L K + + LSGG ++++S A AL P ++ DEPTS
Sbjct: 119 GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 178
Query: 507 GMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+DP + +++ EG+ +++ +H M + + + + G+ G +
Sbjct: 179 ALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 236
Score = 99.5 bits (248), Expect = 5e-24
Identities = 30/146 (20%), Positives = 61/146 (41%), Gaps = 2/146 (1%)
Query: 34 IGYCPQFDALNDRLTPREH-LEFYSRVRNVPSVLLNTIVNESLNKFALGH-YSDREVRTL 91
+ Q L +T E+ +E +V + + L K + + L
Sbjct: 91 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL 150
Query: 92 SGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
SGG ++++S A AL P ++ DEPTS +DP + +++ EG+ +++ +H M
Sbjct: 151 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 210
Query: 152 ECEALCTKLTIMVNGQFTCLGSATHL 177
+ + + + G+ G +
Sbjct: 211 FARHVSSHVIFLHQGKIEEEGDPEQV 236
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 149 bits (377), Expect = 4e-42
Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 10/229 (4%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
+ + ++K++ G AV ++S V GE LLG +G GKTTT +M+ G +P+ G
Sbjct: 3 GVRLVDVWKVF----GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG 58
Query: 402 NAYVMNHSI-----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNT 456
Y+ + + + I Q AL +T +++ F ++R VP ++
Sbjct: 59 QIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ 118
Query: 457 IVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
V E L +R+ R LSGG +++++ A++ P + +DEP S +D R +
Sbjct: 119 RVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 517 WT-CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+ G I +H+ E + ++ +M G +GS +
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
Score = 100 bits (251), Expect = 1e-24
Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 1/178 (0%)
Query: 1 MGLTTTPKRVVTLLLTTQKVPGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVR 60
GL + + + P + I Q AL +T +++ F ++R
Sbjct: 50 AGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR 109
Query: 61 NVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSG 120
VP ++ V E L +R+ R LSGG +++++ A++ P + +DEP S
Sbjct: 110 KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 121 MDPGARRFLWT-CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
+D R + + G I +H+ E + ++ +M G +GS +
Sbjct: 170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 148 bits (376), Expect = 4e-42
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 6/221 (2%)
Query: 345 VKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAY 404
++ + K + G I+ + GE +G +G GK+T +M+ G TSG+ +
Sbjct: 3 LQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 405 VMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNK 464
+ + D +G Q AL L+ E++ F ++ ++N VN+
Sbjct: 59 IGEKRMND-TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 117
Query: 465 FALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-A 523
L H DR+ + LSGG +++++ L+ P + LDEP S +D R + I R
Sbjct: 118 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 177
Query: 524 VSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
GR +I +H+ E L K+ ++ G+ +G L
Sbjct: 178 KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 218
Score = 94.2 bits (234), Expect = 2e-22
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 33 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
+G Q AL L+ E++ F ++ ++N VN+ L H DR+ + LS
Sbjct: 73 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALS 132
Query: 93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER-AVSEGRCVILTSHNME 151
GG +++++ L+ P + LDEP S +D R + I R GR +I +H+
Sbjct: 133 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 192
Query: 152 ECEALCTKLTIMVNGQFTCLGSATHL 177
E L K+ ++ G+ +G L
Sbjct: 193 EAMTLADKIVVLDAGRVAQVGKPLEL 218
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 143 bits (363), Expect = 3e-40
Identities = 47/222 (21%), Positives = 100/222 (45%), Gaps = 11/222 (4%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ +K + K Y + A+ ++ + GE ++G +G+GK+T ++ KPT G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 403 AYVMNHSI-----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTI 457
Y+ N + + R IG+ Q L LT E++E + ++
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 458 VNESLNKFAL----GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGAR 513
+L + +++ + LSGG +++++ A AL NPP+I D+PT +D
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 514 RFLWTCIERAVSE-GRCVILTSHNMEECEALCTKLTIMVNGQ 554
+ +++ E G+ V++ +H++ ++ + +G+
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGE 222
Score = 87.6 bits (217), Expect = 3e-20
Identities = 29/139 (20%), Positives = 64/139 (46%), Gaps = 6/139 (4%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL----GHYSDREVR 89
IG+ Q L LT E++E + ++ +L + +++ +
Sbjct: 85 IGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN 144
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSH 148
LSGG +++++ A AL NPP+I D+PT +D + +++ E G+ V++ +H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Query: 149 NMEECEALCTKLTIMVNGQ 167
++ ++ + +G+
Sbjct: 205 DINVAR-FGERIIYLKDGE 222
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 142 bits (360), Expect = 1e-39
Identities = 59/227 (25%), Positives = 107/227 (47%), Gaps = 7/227 (3%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
++VK + K++ KG A++ ++ + GE FG+LG +GAGKTT +++ G P++G
Sbjct: 4 IIVKNVSKVF--KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 403 AYVMNHSI----RDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIV 458
Y + + + + IG Q AL LT E++ F + + V
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 459 NESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT 518
E + H + R LSG +++++ A AL+ +P L+ LDEP S +D R
Sbjct: 122 EEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 519 -CIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
E G +++ SH+ + A+ ++ ++V G+ +G L
Sbjct: 182 LVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 83.6 bits (206), Expect = 8e-19
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 1/145 (0%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
IG Q AL LT E++ F + + V E + H + R LSG
Sbjct: 84 IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSG 143
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSHNMEE 152
+++++ A AL+ +P L+ LDEP S +D R E G +++ SH+ +
Sbjct: 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203
Query: 153 CEALCTKLTIMVNGQFTCLGSATHL 177
A+ ++ ++V G+ +G L
Sbjct: 204 IFAIADRVGVLVKGKLVQVGKPEDL 228
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 135 bits (341), Expect = 1e-37
Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 13/199 (6%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
L ++ L Y KP + +I+ + +G G NG GKTT K ++ +KP G
Sbjct: 3 LEIRDLSVGY-----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 57
Query: 403 AYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESL 462
I V+ I + P+ + +++ ++L+ + + V + ++L
Sbjct: 58 IIYNGVPITK----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDAL 111
Query: 463 NKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIER 522
+ + + LS G R++ A LL N + LD+P +D ++ + I
Sbjct: 112 ESVEVLDLKKK-LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILE 170
Query: 523 AVSE-GRCVILTSHNMEEC 540
+ E G +I + + C
Sbjct: 171 ILKEKGIVIISSREELSYC 189
Score = 79.6 bits (196), Expect = 1e-17
Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
I + P+ + +++ ++L+ + + V + ++L + + + LS
Sbjct: 72 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLDLKKK-LGELSQ 128
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVILTSHNMEE 152
G R++ A LL N + LD+P +D ++ + I + E G +I + +
Sbjct: 129 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSY 188
Query: 153 C 153
C
Sbjct: 189 C 189
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 135 bits (341), Expect = 3e-37
Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 14/214 (6%)
Query: 359 KPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-SMDLV 417
+ +S V GE L+G NGAGK+T + G + G+ + S +
Sbjct: 12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKL 70
Query: 418 RSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRT 477
+ Y Q +L + + ++N+ AL R
Sbjct: 71 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTE-----LLNDVAGALALDDKLGRSTNQ 125
Query: 478 LSGGNKRKLSTAIALL-------GNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 530
LSGG +++ A +L L+ LDEP + +D + L + +G +
Sbjct: 126 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAI 185
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+++SH++ + ++ G+ G +
Sbjct: 186 VMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219
Score = 82.7 bits (204), Expect = 2e-18
Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 17/188 (9%)
Query: 2 GLTTTPKRVVTLLLTTQKV-----PGSNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFY 56
G +T R+ + + P + K + Y Q +L +
Sbjct: 37 GKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLH 96
Query: 57 SRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALL-------GNP 109
+ ++N+ AL R LSGG +++ A +L
Sbjct: 97 QHDKTRTE-----LLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAG 151
Query: 110 PLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFT 169
L+ LDEP + +D + L + +G ++++SH++ + ++ G+
Sbjct: 152 QLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML 211
Query: 170 CLGSATHL 177
G +
Sbjct: 212 ASGRREEV 219
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 129 bits (324), Expect = 7e-35
Identities = 52/224 (23%), Positives = 104/224 (46%), Gaps = 10/224 (4%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
++ ++ L + + N +++ +S V GE F +LG GAGKT +++ G P SG
Sbjct: 1 MIEIESLSRKWKN-----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG 55
Query: 402 NAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNES 461
+ + D + I + Q +L + +++LEF R++ + V ++
Sbjct: 56 RILLDGKDVTDLSP-EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD---PKRVLDT 111
Query: 462 LNKFALGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CI 520
+ H DR TLSGG +++++ A AL+ NP ++ LDEP S +DP +
Sbjct: 112 ARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS 171
Query: 521 ERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
V+ +H+ E + ++ ++++G+ +G +
Sbjct: 172 VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
Score = 75.1 bits (184), Expect = 5e-16
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 4/149 (2%)
Query: 33 YIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLS 92
I + Q +L + +++LEF R++ + V ++ + H DR TLS
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD---PKRVLDTARDLKIEHLLDRNPLTLS 129
Query: 93 GGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSHNME 151
GG +++++ A AL+ NP ++ LDEP S +DP + V+ +H+
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189
Query: 152 ECEALCTKLTIMVNGQFTCLGSATHLKSK 180
E + ++ ++++G+ +G + K
Sbjct: 190 EARIMADRIAVVMDGKLIQVGKPEEIFEK 218
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 126 bits (317), Expect = 3e-33
Identities = 40/216 (18%), Positives = 78/216 (36%), Gaps = 18/216 (8%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM 414
P + I+ + +GE + G G+GKT+ ++ G ++ + G
Sbjct: 45 CLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR------ 98
Query: 415 DLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDRE 474
+ +C QF + T +E++ F + + +
Sbjct: 99 ------VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTV 151
Query: 475 V----RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCV 530
+ TLSGG + ++S A A+ + L LD P +D ++ + +
Sbjct: 152 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTR 211
Query: 531 ILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKS 566
IL + ME K+ I+ G G+ + L+S
Sbjct: 212 ILVTSKMEHLR-KADKILILHQGSSYFYGTFSELQS 246
Score = 83.0 bits (205), Expect = 3e-18
Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 6/152 (3%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREV----R 89
+ +C QF + T +E++ F + + + +
Sbjct: 99 VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 157
Query: 90 TLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN 149
TLSGG + ++S A A+ + L LD P +D ++ + + IL +
Sbjct: 158 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 217
Query: 150 MEECEALCTKLTIMVNGQFTCLGSATHLKSKS 181
ME K+ I+ G G+ + L+S
Sbjct: 218 MEHLR-KADKILILHQGSSYFYGTFSELQSLR 248
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 119 bits (300), Expect = 3e-31
Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 13/230 (5%)
Query: 342 VLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSG 401
+L + + Y ++ + ISF G +G GK+T F +L +PT+G
Sbjct: 1 MLSARHVDFAY---DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG 57
Query: 402 NAYVMNHSIRD-SMDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNE 460
+ I + S++ RS IG+ Q A+ T RE+L + L +
Sbjct: 58 EITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLA 116
Query: 461 SLNKFALG------HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARR 514
F +SGG +++L+ A A L NP ++ LDE T+ +D +
Sbjct: 117 FARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 515 FLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
+ ++ + +GR ++ +H + K+ + GQ T G L
Sbjct: 177 MVQKALDS-LMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNEL 224
Score = 66.4 bits (162), Expect = 7e-13
Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 9/165 (5%)
Query: 23 SNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG- 81
N +++ S IG+ Q A+ T RE+L + L + F
Sbjct: 67 DNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 82 -----HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERA 136
+SGG +++L+ A A L NP ++ LDE T+ +D + + ++
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS- 184
Query: 137 VSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKS 181
+ +GR ++ +H + K+ + GQ T G L +
Sbjct: 185 LMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVATH 228
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 117 bits (294), Expect = 2e-30
Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 5/201 (2%)
Query: 365 ISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYC 424
+ F +G + LLG GAGK+ +++ G +KP G + I + R IG+
Sbjct: 18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP-LPPERRGIGFV 75
Query: 425 PQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKR 484
PQ AL L+ ++ + +RNV V + V E K + H DR+ LSGG ++
Sbjct: 76 PQDYALFPHLSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQ 133
Query: 485 KLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSHNMEECEAL 543
+++ A AL+ P L+ LDEP S +D + L ++ +H++ E L
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML 193
Query: 544 CTKLTIMVNGQFTCLGSATHL 564
++ +M+NG+ G L
Sbjct: 194 ADEVAVMLNGRIVEKGKLKEL 214
Score = 72.4 bits (177), Expect = 7e-15
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 34 IGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSG 93
IG+ PQ AL L+ ++ + +RNV V + V E K + H DR+ LSG
Sbjct: 72 IGFVPQDYALFPHLSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSG 129
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWT-CIERAVSEGRCVILTSHNMEE 152
G +++++ A AL+ P L+ LDEP S +D + L ++ +H++ E
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 153 CEALCTKLTIMVNGQFTCLGSATHL 177
L ++ +M+NG+ G L
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKEL 214
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 115 bits (290), Expect = 8e-30
Identities = 47/247 (19%), Positives = 103/247 (41%), Gaps = 16/247 (6%)
Query: 324 DDVRKERERVEHGADSGDVLVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGA 383
D+ ++ +R GD+ + + Y + PA+ I+ + G+ L+G +G+
Sbjct: 1 DEGKRVIDRAT-----GDL-EFRNVTFTYPGRE--VPALRNINLKIPAGKTVALVGRSGS 52
Query: 384 GKTTTFKMLTGAIKPTSGNAYVMNHSIRDSM-DLVRSYIGYCPQFDALNDRLTPREHLEF 442
GK+T ++T G+ + H +R+ +R+ + Q L +
Sbjct: 53 GKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYA 112
Query: 443 YSRVRN---VPSVLLNTIVNESLNKFALG--HYSDREVRTLSGGNKRKLSTAIALLGNPP 497
+ + + + +NK G LSGG +++++ A ALL + P
Sbjct: 113 RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP 172
Query: 498 LIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTC 557
++ LDE TS +D + R + ++ + R ++ +H + E ++ ++ +G
Sbjct: 173 ILILDEATSALDTESERAIQAALDEL-QKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE 230
Query: 558 LGSATHL 564
G+ + L
Sbjct: 231 RGTHSEL 237
Score = 68.3 bits (167), Expect = 1e-13
Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 80 LGHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE 139
L LSGG +++++ A ALL + P++ LDE TS +D + R + ++ +
Sbjct: 142 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QK 200
Query: 140 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKS 181
R ++ +H + E ++ ++ +G G+ + L ++
Sbjct: 201 NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQH 241
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 115 bits (290), Expect = 8e-30
Identities = 51/228 (22%), Positives = 97/228 (42%), Gaps = 11/228 (4%)
Query: 343 LVVKRLFKIYANSKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGN 402
+ + + Y + P + I+ + +GE +G++G GK+T ++ TSG
Sbjct: 17 IDIDHVSFQYND--NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 74
Query: 403 AYVMNHSIRD-SMDLVRSYIGYCPQFDALNDRLTPREHLEF---YSRVRNVPSVLLNTIV 458
+ H+I+D +R+ IG Q D + T +E++ + V
Sbjct: 75 ILIDGHNIKDFLTGSLRNQIGLV-QQDNILFSDTVKENILLGRPTATDEEVVEAAKMANA 133
Query: 459 NESLNKFALG--HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFL 516
++ + G LSGG K++LS A L NPP++ LDE TS +D + +
Sbjct: 134 HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 193
Query: 517 WTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
++ +S+ R ++ +H + K+ ++ NG G+ L
Sbjct: 194 QEALDV-LSKDRTTLIVAHRLSTI-THADKIVVIENGHIVETGTHREL 239
Score = 66.0 bits (161), Expect = 9e-13
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 89 RTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSH 148
LSGG K++LS A L NPP++ LDE TS +D + + ++ +S+ R ++ +H
Sbjct: 153 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAH 211
Query: 149 NMEECEALCTKLTIMVNGQFTCLGSATHLKSKS 181
+ K+ ++ NG G+ L +K
Sbjct: 212 RLSTI-THADKIVVIENGHIVETGTHRELIAKQ 243
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 110 bits (276), Expect = 5e-28
Identities = 43/216 (19%), Positives = 98/216 (45%), Gaps = 9/216 (4%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-S 413
+ ++ I+ + +GE G++G +G+GK+T K++ P +G + H +
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 71
Query: 414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-----G 468
+ +R +G Q + L +R + +++ + +V V+ + + + +
Sbjct: 72 PNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYN 130
Query: 469 HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGR 528
+ LSGG +++++ A AL+ NP ++ DE TS +D + + + + +GR
Sbjct: 131 TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGR 189
Query: 529 CVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
VI+ +H + + ++ +M G+ G L
Sbjct: 190 TVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKEL 224
Score = 67.2 bits (164), Expect = 3e-13
Identities = 29/160 (18%), Positives = 68/160 (42%), Gaps = 8/160 (5%)
Query: 23 SNPTIDKNLSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFAL-- 80
+ + +G Q + L +R + +++ + +V V+ + + + +
Sbjct: 68 ALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR 126
Query: 81 ---GHYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAV 137
+ LSGG +++++ A AL+ NP ++ DE TS +D + + + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKI 185
Query: 138 SEGRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 177
+GR VI+ +H + + ++ +M G+ G L
Sbjct: 186 CKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKEL 224
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 105 bits (264), Expect = 2e-26
Identities = 41/218 (18%), Positives = 86/218 (39%), Gaps = 10/218 (4%)
Query: 355 SKGTKPAVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRD-S 413
++ + ++F + GE L+G NG+GK+T +L +PT G + +
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE 82
Query: 414 MDLVRSYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG----- 468
+ + Q + R + +E++ + + + V + F G
Sbjct: 83 HRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGY 141
Query: 469 -HYSDREVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE- 526
D LSGG ++ ++ A AL+ P ++ LD+ TS +D ++ + + +
Sbjct: 142 DTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERY 201
Query: 527 GRCVILTSHNMEECEALCTKLTIMVNGQFTCLGSATHL 564
R V+L + ++ E + + G G+ L
Sbjct: 202 SRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQL 238
Score = 59.9 bits (145), Expect = 1e-10
Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 9/157 (5%)
Query: 32 SYIGYCPQFDALNDRLTPREHLEFYSRVRNVPSVLLNTIVNESLNKFALG------HYSD 85
+ Q + R + +E++ + + + V + F G D
Sbjct: 88 RQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVD 146
Query: 86 REVRTLSGGNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSE-GRCVI 144
LSGG ++ ++ A AL+ P ++ LD+ TS +D ++ + + + R V+
Sbjct: 147 EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVL 206
Query: 145 LTSHNMEECEALCTKLTIMVNGQFTCLGSATHLKSKS 181
L + ++ E + + G G+ L K
Sbjct: 207 LITQHLSLVE-QADHILFLEGGAIREGGTHQQLMEKK 242
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 69.2 bits (168), Expect = 2e-14
Identities = 18/188 (9%), Positives = 45/188 (23%), Gaps = 26/188 (13%)
Query: 376 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLT 435
+ G G GKTT K + + + + ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK--------------------- 42
Query: 436 PREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN 495
+ + + + G + + + + A
Sbjct: 43 -KRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGV--NVQYFEELAIPILERAYREAKKDR 99
Query: 496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALCTKLTIMVNGQF 555
+I +DE M+ +++F + V+ T + L ++ +
Sbjct: 100 RKVIIIDEIGK-MELFSKKFRDLVRQIMHDPNVNVVATIPIRDV-HPLVKEIRRLPGAVL 157
Query: 556 TCLGSATH 563
L
Sbjct: 158 IELTPENR 165
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 58.3 bits (139), Expect = 1e-09
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 94 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
G +L+ ++ L G L+ LDEPT +D RR L T +ER + + VIL SH+ E
Sbjct: 288 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 345
Score = 58.3 bits (139), Expect = 1e-09
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 481 GNKRKLSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
G +L+ ++ L G L+ LDEPT +D RR L T +ER + + VIL SH+ E
Sbjct: 288 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 345
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 54.0 bits (128), Expect = 1e-08
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 102 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 151
++ L G L+ LDEPT +D RR L T +ER + + VIL SH+ E
Sbjct: 219 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 268
Score = 54.0 bits (128), Expect = 1e-08
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 489 AIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNME 538
++ L G L+ LDEPT +D RR L T +ER + + VIL SH+ E
Sbjct: 219 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 268
Score = 31.7 bits (70), Expect = 0.22
Identities = 7/68 (10%), Positives = 20/68 (29%), Gaps = 2/68 (2%)
Query: 361 AVNQISFGVGRGECFGLLGLNGAGKTTTFKMLTGAI-KPTSGNAYVMNHSIRDSMDLVRS 419
+ + G ++G NG+GK++ + + P + +
Sbjct: 13 SHSDTVVEFKEGI-NLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYI 71
Query: 420 YIGYCPQF 427
+ +
Sbjct: 72 DLIFEKDG 79
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 39.7 bits (91), Expect = 8e-04
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 99 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN---MEECEA 155
L AI P LDE + +D + + I R + I+ S E+ +A
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDA 404
Query: 156 L 156
L
Sbjct: 405 L 405
Score = 39.7 bits (91), Expect = 8e-04
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 486 LSTAIALLGNPPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHN---MEECEA 542
L AI P LDE + +D + + I R + I+ S E+ +A
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDA 404
Query: 543 L 543
L
Sbjct: 405 L 405
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 35.2 bits (80), Expect = 0.017
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 376 GLLGLNGAGKTTTFKMLTGAIKPTSGN 402
G++G+ GK+T F+ +T ++ N
Sbjct: 14 GIVGMPNVGKSTFFRAITKSVLGNPAN 40
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 31.6 bits (71), Expect = 0.19
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 377 LLGLNGAGKTTT-----FKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALN 431
++G+NG GKTT+ + A + + + + +G +
Sbjct: 16 VVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEG 75
Query: 432 -DRLTPREHLEFYSRVRNVPSVLLNT 456
D ++ RN V+++T
Sbjct: 76 ADPAAVAFDAVAHALARNKDVVIIDT 101
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 30.9 bits (69), Expect = 0.32
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 377 LLGLNGAGKTTTFKML-TGAIKPTSG 401
LLG +GK+T K + + TSG
Sbjct: 11 LLGAGESGKSTIVKQMRILHVVLTSG 36
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 31.1 bits (70), Expect = 0.33
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 11/41 (26%)
Query: 376 GLLGLNGAGKTTTFKMLTGA-----------IKPTSGNAYV 405
G++GL GK+T F LT A I+P +G +
Sbjct: 6 GIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM 46
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 31.0 bits (69), Expect = 0.34
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 376 GLLGLNGAGKTTTFKMLTGAIKPTSGN 402
G++G GK+T F T N
Sbjct: 4 GVVGKPNVGKSTFFSAATLV-DVEIAN 29
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 30.4 bits (68), Expect = 0.48
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 377 LLGLNGAGKTTT-----FKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG 422
++G+NG GKTTT + + + + +
Sbjct: 14 MVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 64
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 29.9 bits (66), Expect = 0.51
Identities = 8/80 (10%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Query: 377 LLGLNGAGKTTTFKMLTGAIK-------PTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDA 429
+ G+ G G TT+ ++ ++ S + + + +++ R +
Sbjct: 6 VTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQ 65
Query: 430 LNDRLTPREHLEFYSRVRNV 449
+ + ++ V
Sbjct: 66 KRIQKMAGRKIAEMAKESPV 85
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 29.7 bits (66), Expect = 0.73
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 377 LLGLNGAGKTTT-----FKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIG 422
L+G+ G GK TT + K A V + + + + IG
Sbjct: 17 LVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIG 67
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 29.7 bits (66), Expect = 0.77
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 377 LLGLNGAGKTTT 388
++G+NG GKTTT
Sbjct: 11 VVGVNGVGKTTT 22
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 29.3 bits (65), Expect = 0.82
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 377 LLGLNGAGKTTT 388
L+GL G+GKTTT
Sbjct: 15 LVGLQGSGKTTT 26
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 29.5 bits (65), Expect = 0.86
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSG 401
LLG +GK+T K + + +G
Sbjct: 7 LLGAGESGKSTIVKQMKIIHEAGTG 31
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 29.2 bits (64), Expect = 0.98
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 376 GLLGLNGAGKTTTFKMLTGA 395
GL+G AGK++ +T A
Sbjct: 5 GLVGYPNAGKSSLLAAMTRA 24
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 28.9 bits (63), Expect = 1.0
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 371 RGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI 410
+G L G +GK + L + G + +
Sbjct: 5 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 44
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 29.2 bits (64), Expect = 1.1
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 377 LLGLNGAGKTTTFKML 392
+ G+ G GK+T +
Sbjct: 6 VTGIPGVGKSTVLAKV 21
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 28.8 bits (63), Expect = 1.3
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 377 LLGLNGAGKTTTFKMLTG----AIKPTSGNAYVMNH 408
+ G +GKT+ +LT + ++
Sbjct: 8 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY 43
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 28.7 bits (63), Expect = 1.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 376 GLLGLNGAGKTTTFKMLTGA 395
GL+G GK+T +++ A
Sbjct: 5 GLVGFPSVGKSTLLSVVSSA 24
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 28.0 bits (61), Expect = 2.2
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMN 407
++GL GKT K LT + N
Sbjct: 7 MVGLPARGKTYISKKLTRYLNFIGVPTREFN 37
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 27.7 bits (60), Expect = 2.6
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408
+LGL+ AGKTT K G T N
Sbjct: 7 MLGLDNAGKTTILKKFNGEDVDTISPTLGFNI 38
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.9 bits (61), Expect = 2.7
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 377 LLGLNGAGKTTTFKMLTG--AIKPTSG 401
LLG +GK+T K + PT G
Sbjct: 7 LLGAGESGKSTFLKQMRIIHGQDPTKG 33
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 28.0 bits (61), Expect = 2.7
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 9/57 (15%)
Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDR 433
L G G+GKT+ + + I D + + L ++
Sbjct: 37 LGGQPGSGKTSLRSAIFEET---------QGNVIVIDNDTFKQQHPNFDELVKLYEK 84
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 27.7 bits (60), Expect = 2.7
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMD 415
++GL+ AGKTT + + N +
Sbjct: 20 IVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 58
>d1sp3a_ a.138.1.3 (A:) Putative Cytochrome c {Shewanella oneidensis
[TaxId: 70863]}
Length = 442
Score = 28.4 bits (62), Expect = 2.9
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 235 TCMACHGALYSAINLSIEYKVFSRCFTRSNG---TRLVAVNIWAWRIIGKNLTCMACH 289
C+ CH + + + + + ++N + I C +CH
Sbjct: 21 QCLTCHEEQATDMMKTSHWTWELEQKLPDRTVVRGKKNSINNFCVAISSNEPRCTSCH 78
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.6 bits (60), Expect = 3.0
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 377 LLGLNGAGKTT---TFKMLTGAIKPTSG 401
LLG +GK+T +++ G+ PT+G
Sbjct: 7 LLGTGESGKSTFIKQMRIIHGSGVPTTG 34
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain
{Penicillium minioluteum [TaxId: 28574]}
Length = 373
Score = 27.7 bits (61), Expect = 3.7
Identities = 8/85 (9%), Positives = 14/85 (16%), Gaps = 2/85 (2%)
Query: 213 IRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRLVAVN 272
I + N I + + I +
Sbjct: 141 INAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEIYPNSVVHDVFWHVNDDAIK-- 198
Query: 273 IWAWRIIGKNLTCMACHGALYSAIN 297
I+ T CH +
Sbjct: 199 IYYSGASVSRATIWKCHNDPIIQMG 223
>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 141
Score = 27.1 bits (60), Expect = 3.8
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 11/45 (24%)
Query: 399 TSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLTPREHLEFY 443
G V+ I D +D+ CP+ D+ E+Y
Sbjct: 17 LPGQGLVLYPQIGDKLDI------ICPKVDS-----KTVGQYEYY 50
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 27.7 bits (61), Expect = 4.0
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 369 VGRGECFGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVM 406
+GRG+ ++ AGKT + + +I + +M
Sbjct: 40 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 77
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.0 bits (58), Expect = 4.6
Identities = 13/70 (18%), Positives = 24/70 (34%)
Query: 376 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQFDALNDRLT 435
G+ GL+ +GKTT L+ ++ + V + R + G F+ +
Sbjct: 26 GIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWD 85
Query: 436 PREHLEFYSR 445
R
Sbjct: 86 VEWLTHQLFR 95
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 27.0 bits (58), Expect = 4.7
Identities = 10/50 (20%), Positives = 13/50 (26%)
Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSIRDSMDLVRSYIGYCPQ 426
LGL+ AGKTT ML + +
Sbjct: 18 FLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGH 67
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.0 bits (58), Expect = 4.8
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 377 LLGLNGAGKTTTFKMLTGA----IKPTSGNAYVMNH 408
LGL+ AGKTT ML ++PT
Sbjct: 5 FLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELA 40
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 26.9 bits (58), Expect = 5.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 377 LLGLNGAGKTTTFKML 392
L+GL G+GK+T + L
Sbjct: 6 LVGLPGSGKSTIGRRL 21
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 26.5 bits (57), Expect = 6.0
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 377 LLGLNGAGKTTTFKML 392
++G G G TT + L
Sbjct: 7 MVGARGCGMTTVGREL 22
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 27.4 bits (60), Expect = 6.2
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 370 GRGECFGLLGLNGAGKTTTFKM----LTGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
+C + G +GAGKT K LT S N ++ + DS L+ ++
Sbjct: 84 QENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAF 138
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 26.8 bits (58), Expect = 6.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 370 GRGECFGLLGLNGAGKTTTFKML 392
GRG+ + GL+ GKTT +L
Sbjct: 1 GRGKLILIEGLDRTGKTTQCNIL 23
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 26.6 bits (57), Expect = 6.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 377 LLGLNGAGKTTTFKML 392
L+G GAGK+T + L
Sbjct: 7 LVGPMGAGKSTIGRQL 22
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 26.4 bits (57), Expect = 6.6
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 377 LLGLNGAGKTTTFKML 392
+G G+GK+T + L
Sbjct: 5 FIGFMGSGKSTLARAL 20
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 26.2 bits (56), Expect = 7.2
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408
++GL+ AGKTT L T+ N
Sbjct: 5 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 36
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
[TaxId: 5053]}
Length = 422
Score = 26.9 bits (59), Expect = 7.2
Identities = 12/106 (11%), Positives = 31/106 (29%), Gaps = 3/106 (2%)
Query: 209 SGSGIRNSARPEVSGFYNENIDGKNLTCMACHGALYSAINLSIEYKVFSRCFTRSNGTRL 268
+ ++ + + + N+ + I++ +N
Sbjct: 141 HDIILVDAPAFHFTMDTCSDGEVYNMAIRGGNEGGLDGIDVWGSNIWVHDVEV-TNKDEC 199
Query: 269 VAVNIWAWRIIGKNLTCMACHG--ALYSAINLSIEYKVFSRCFTRS 312
V V A I+ +++ C G + + V+ +T S
Sbjct: 200 VTVKSPANNILVESIYCNWSGGCAMGSLGADTDVTDIVYRNVYTWS 245
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 26.2 bits (56), Expect = 7.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408
+LGL+GAGKTT L T+ N
Sbjct: 10 ILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV 41
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 26.2 bits (56), Expect = 8.0
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 376 GLLGLNGAGKTTTFKMLTGA 395
G + GK+T LTG
Sbjct: 4 IFAGRSNVGKSTLIYRLTGK 23
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 26.7 bits (57), Expect = 8.3
Identities = 22/169 (13%), Positives = 46/169 (27%), Gaps = 4/169 (2%)
Query: 377 LLGLNGAGKTTTFKMLTGAIKPTSGNAYVM-NHSIRDSMDLVRSYIGYCPQFDALNDRLT 435
LLG G GKT T + L K + +V N I + + I L+
Sbjct: 48 LLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLS 107
Query: 436 PREHLEFYSRVRNVPSVLLNTIVNESLNKFALGHYSDREVRTLSGGNKRKLSTAIALLGN 495
E L + + +++++ N + + + + + N
Sbjct: 108 RDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHN 167
Query: 496 PPLIFLDEPTSGMDPGARRFLWTCIERAVSEGRCVILTSHNMEECEALC 544
++ +P++ + IL
Sbjct: 168 DAVLNNLDPSTRG---IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGS 213
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 26.1 bits (56), Expect = 8.6
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 375 FGLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNH 408
+G GKTT K L A+ ++ H
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 38
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 26.1 bits (56), Expect = 8.7
Identities = 12/83 (14%), Positives = 19/83 (22%), Gaps = 1/83 (1%)
Query: 376 GLLGLNGAGKTTTFKMLTGAIKPTSGNAYVMNHSI-RDSMDLVRSYIGYCPQFDALNDRL 434
L G G GKTT + +K + R + + R+
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV 64
Query: 435 TPREHLEFYSRVRNVPSVLLNTI 457
V L +
Sbjct: 65 GLEPPPGKRECRVGQYVVDLTSF 87
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 26.1 bits (56), Expect = 9.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 377 LLGLNGAGKTTTFKMLTG 394
LLGL+ AGKTT K L
Sbjct: 21 LLGLDNAGKTTLLKQLAS 38
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 26.6 bits (58), Expect = 9.9
Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 370 GRGECFGLLGLNGAGKTTTFKML-----TGAIKPTSGNAYVMNHSIRDSMDLVRSY 420
+ + + G +GAGKT K + + A + + + V+ I + ++ ++
Sbjct: 123 RQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAF 178
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,045,835
Number of extensions: 95428
Number of successful extensions: 576
Number of sequences better than 10.0: 1
Number of HSP's gapped: 532
Number of HSP's successfully gapped: 92
Length of query: 566
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 476
Effective length of database: 1,171,896
Effective search space: 557822496
Effective search space used: 557822496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (26.0 bits)