BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7367
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 123/239 (51%), Gaps = 10/239 (4%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ ++ L+ + +G A+ G+N+N ++T+ LG NG GK+T G+L SSG
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 61 YNHDI---RTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
N I R + +R S+G+ Q N LF +V + + F + ++P+D + + N
Sbjct: 68 DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA-SVYQDVSFGAVNMKLPEDEIRKRVDN 126
Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
+ GI H + + LS G ++++++A + + +ILDEPT+G+DP I +LL
Sbjct: 127 ALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186
Query: 176 IKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGK--LQCCGSSVFLKNSFARGYYLSL 230
++ +K G T+I+ TH +D L D + ++ G+ LQ VF + R L L
Sbjct: 187 VEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRL 245
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 132/259 (50%), Gaps = 19/259 (7%)
Query: 1 MAIQNLSKRFPNGKLAVNGLN---VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
+ + N++K F G + LN ++ QI +G +GAGK+T I + + + G+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 58 AKIYNHDIRT----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI 113
+ ++ T ++T RR +G+ Q+ L TV ++ +L PKD + +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
+ ++ +G+ K S + LSGG ++++++A A + ++ DE TS +DP + RSI E
Sbjct: 122 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 174 LL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL--QCCGSSVF--LKNSFARGYY 227
LL I + G T++L TH MD + D +A+I+ G+L Q S VF K A+ +
Sbjct: 182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFI 241
Query: 228 ---LSLDMKS---AQLQAE 240
L LD+ +LQAE
Sbjct: 242 QSTLHLDIPEDYQERLQAE 260
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 132/259 (50%), Gaps = 19/259 (7%)
Query: 1 MAIQNLSKRFPNGKLAVNGLN---VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
+ + N++K F G + LN ++ QI +G +GAGK+T I + + + G+
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 58 AKIYNHDIRT----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI 113
+ ++ T ++T RR +G+ Q+ L TV ++ +L PKD + +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
+ ++ +G+ K S + LSGG ++++++A A + ++ D+ TS +DP + RSI E
Sbjct: 145 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE 204
Query: 174 LL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL--QCCGSSVF--LKNSFARGYY 227
LL I + G T++L TH MD + D +A+I+ G+L Q S VF K A+ +
Sbjct: 205 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFI 264
Query: 228 ---LSLDMKS---AQLQAE 240
L LD+ +LQAE
Sbjct: 265 QSTLHLDIPEDYQERLQAE 283
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 114/223 (51%), Gaps = 2/223 (0%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ +++L KR ++ + G++ E +I +G NGAGKTTT+ ++ ++ SSG +
Sbjct: 16 VVVKDLRKRIGKKEI-LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 74
Query: 61 YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
+ ++ + +R+ + P+ + + E++ F + + +
Sbjct: 75 FGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA 134
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-K 179
G+ K +T S GM RKL +A A + R ILDEPTSG+D + R + ++L + +
Sbjct: 135 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSF 222
+G T+++++H M E + L DRIA+I G + G+ LK +
Sbjct: 195 EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 237
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 130/259 (50%), Gaps = 19/259 (7%)
Query: 1 MAIQNLSKRFPNGKLAVNGLN---VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
+ + N++K F G + LN ++ QI +G +GAGK+T I + + + G+
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 58 AKIYNHDIRT----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI 113
+ ++ T ++T RR +G Q+ L TV ++ +L PKD + +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
+ ++ +G+ K S + LSGG ++++++A A + ++ D+ TS +DP + RSI E
Sbjct: 145 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE 204
Query: 174 LL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL--QCCGSSVF--LKNSFARGYY 227
LL I + G T++L TH D + D +A+I+ G+L Q S VF K A+ +
Sbjct: 205 LLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFI 264
Query: 228 ---LSLDMKS---AQLQAE 240
L LD+ +LQAE
Sbjct: 265 QSTLHLDIPEDYQERLQAE 283
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 110/211 (52%), Gaps = 3/211 (1%)
Query: 6 LSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI 65
+ K +P G +V G++ E ++ LG +G+GKTT + ++ G+ + G I +
Sbjct: 20 VEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRV 79
Query: 66 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK 125
TD+ +R++G+ Q ALF +TV +++ F + K+VPKD + ++ + +
Sbjct: 80 -TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESY 138
Query: 126 RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRT 183
+ LSGG Q+++++A A + ++ DEP + +D RR + + + + G T
Sbjct: 139 ANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198
Query: 184 VILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
+ TH +EA + DR+ ++ G ++ G+
Sbjct: 199 SVFVTHDQEEALEVADRVLVLHEGNVEQFGT 229
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 126/247 (51%), Gaps = 8/247 (3%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ ++N+ K+F N A+N +N+ + + + LG +G+GK+T + + G+ +SG
Sbjct: 4 IKLENIVKKFGNFT-ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62
Query: 61 YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
D+ T++ R++G+ Q AL+ +TV +++ F +L++ P++ ++ + L
Sbjct: 63 DEKDV-TELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKML 121
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
I LSGG Q+++++A A + ++LDEP S +D R + L + +K
Sbjct: 122 HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181
Query: 181 --GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS--SVFLKN--SFARGYYLSLDMKS 234
G T + TH EA + DRIA+I G++ G+ V+ K F G+ + M
Sbjct: 182 ELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGFLGNPPMNF 241
Query: 235 AQLQAED 241
+ + ED
Sbjct: 242 VEAKVED 248
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 117/215 (54%), Gaps = 8/215 (3%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ I++LS+++ N +++ L++ + LG GAGKT + ++ G SG +
Sbjct: 2 IEIESLSRKWKN--FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 61 YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
D+ TD++ + + Q +LF + V++++ F ++K++ L+ + DL
Sbjct: 60 DGKDV-TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR---DL 115
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL-IKYK 179
I H TLSGG Q+++++A A + + ++LDEP S +DP ++ + E+L + +K
Sbjct: 116 KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK 175
Query: 180 KGR-TVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
K + TV+ TH EA ++ DRIA++ GKL G
Sbjct: 176 KNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVG 210
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 129/256 (50%), Gaps = 8/256 (3%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ ++NL+KRF N AVN LN+ + + LG +G GKTTT+ M+ G+ + G
Sbjct: 13 VKLENLTKRFGNFT-AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 71
Query: 61 YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
+ D+ T + R++ + Q A++ +TV E++ F ++K+ PKD + L
Sbjct: 72 GDRDV-TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL 130
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
I LSGG +++++VA A + +++DEP S +D R ++ + K ++
Sbjct: 131 QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 190
Query: 181 GR--TVILTTHYMDEADLLGDRIAIIAAGKLQCCGS--SVFLKNS--FARGYYLSLDMKS 234
T I TH EA +GDRIA++ G+L GS V+L+ + F + + +M
Sbjct: 191 KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNI 250
Query: 235 AQLQAEDIGLDGDRIR 250
++ D L+G R
Sbjct: 251 LEVSVGDGYLEGRGFR 266
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 129/256 (50%), Gaps = 8/256 (3%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ ++NL+KRF N AVN LN+ + + LG +G GKTTT+ M+ G+ + G
Sbjct: 12 VKLENLTKRFGNFT-AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70
Query: 61 YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
+ D+ T + R++ + Q A++ +TV E++ F ++K+ PKD + L
Sbjct: 71 GDRDV-TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL 129
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
I LSGG +++++VA A + +++DEP S +D R ++ + K ++
Sbjct: 130 QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 189
Query: 181 GR--TVILTTHYMDEADLLGDRIAIIAAGKLQCCGS--SVFLKNS--FARGYYLSLDMKS 234
T I TH EA +GDRIA++ G+L GS V+L+ + F + + +M
Sbjct: 190 KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEMNI 249
Query: 235 AQLQAEDIGLDGDRIR 250
++ D L+G R
Sbjct: 250 LEVSVGDGYLEGRGFR 265
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 132/261 (50%), Gaps = 26/261 (9%)
Query: 3 IQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+ NL K F GK+ AV+G++ + + + LG +G GKTTT+ ML G+ +SG +IY
Sbjct: 6 VVNLKKYF--GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSG--EIY 61
Query: 62 NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
D+ D+ R +G+ Q AL+ +TV E++ F + +++ KD + + + L
Sbjct: 62 FDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKL 121
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
I + LSGG Q+++++A A + + ++ DEP S +D + R I IK+ +
Sbjct: 122 LIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD-ANLRMIMRAEIKHLQ 180
Query: 181 ---GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS-------------SVFLKN---S 221
G T + TH EA + RIA+ GKL G+ + F+ N +
Sbjct: 181 QELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNPPTN 240
Query: 222 FARGYYLSLDMKSAQLQAEDI 242
F R + +S++ K L+ +D+
Sbjct: 241 FLRDFSVSVENKQTILKRDDV 261
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 118/237 (49%), Gaps = 10/237 (4%)
Query: 3 IQNLSKRFPNGKLAVN-GLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+QN++K + G++ V+ +N++ +E + F+G +G GK+T + M+ G+ ++SG I
Sbjct: 6 LQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 62 NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
+ D R +G+ Q AL+ L+V E+M F +L K++ ++ + L
Sbjct: 64 EKRM-NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 122
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK- 180
+ H LSGG ++++++ + +LDEP S +D R + + + K
Sbjct: 123 LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182
Query: 181 -GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL----KNSFARGYYLSLDM 232
GRT+I TH EA L D+I ++ AG++ G + L + F G+ S M
Sbjct: 183 LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM 239
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 118/237 (49%), Gaps = 10/237 (4%)
Query: 3 IQNLSKRFPNGKLAVN-GLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+QN++K + G++ V+ +N++ +E + F+G +G GK+T + M+ G+ ++SG I
Sbjct: 6 LQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 62 NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
+ D R +G+ Q AL+ L+V E+M F +L K++ ++ + L
Sbjct: 64 EKRM-NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 122
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK- 180
+ H LSGG ++++++ + +LDEP S +D R + + + K
Sbjct: 123 LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182
Query: 181 -GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL----KNSFARGYYLSLDM 232
GRT+I TH EA L D+I ++ AG++ G + L + F G+ S M
Sbjct: 183 LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM 239
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 118/237 (49%), Gaps = 10/237 (4%)
Query: 3 IQNLSKRFPNGKLAVN-GLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+QN++K + G++ V+ +N++ +E + F+G +G GK+T + M+ G+ ++SG I
Sbjct: 6 LQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 62 NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
+ D R +G+ Q AL+ L+V E+M F +L K++ ++ + L
Sbjct: 64 EKRM-NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 122
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK- 180
+ H LSGG ++++++ + +LD+P S +D R + + + K
Sbjct: 123 LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKR 182
Query: 181 -GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL----KNSFARGYYLSLDM 232
GRT+I TH EA L D+I ++ AG++ G + L + F G+ S M
Sbjct: 183 LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKM 239
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 115/222 (51%), Gaps = 11/222 (4%)
Query: 1 MAIQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ ++N+SK F GK+ A++ +N+N + LG +GAGKTT + ++ G+ S+G
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 60 IYNHDIRTDMTTI----RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
+ + ++ I R +G+ Q AL+ LT E++ F ++ K+ + +
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
+ L I H LSGG Q+++++A A + ++LDEP S +D R S L+
Sbjct: 124 VAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 176 --IKYKKGRTVILTTHYMDEADL--LGDRIAIIAAGKLQCCG 213
++ + G T+++ +H D AD+ + DR+ ++ GKL G
Sbjct: 184 KEVQSRLGVTLLVVSH--DPADIFAIADRVGVLVKGKLVQVG 223
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 12/233 (5%)
Query: 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
N+ KRF AV L++ + + LG +G GKTTT+ + G+ + G I ++
Sbjct: 11 NIWKRF-GDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNL 69
Query: 65 IRTDMTTI-----RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
+ + R + Q AL+ TV +++ F +L++VPK + +
Sbjct: 70 VADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEX 129
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
LG+ LSGG ++++++ A I + + DEP S +D R L K +
Sbjct: 130 LGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQ 189
Query: 180 K--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS--SVFLK--NSFARGY 226
+ G T I TH EA GDRIA+ G+LQ G+ V+ K N+F G+
Sbjct: 190 RQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTFVAGF 242
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 118/228 (51%), Gaps = 14/228 (6%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ + ++S R+ NG + +N F +I +G NG+GKTT + +L G+L + +I
Sbjct: 12 IELNSVSFRY-NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL---AAAGEI 67
Query: 61 YNHDIRTDMTTIRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
+ D +R+++G Q ++ TVEE + F ++ + + + I ++
Sbjct: 68 FLDGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLEL 127
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
+G+ + LSGG +++L++A +R + LDEP S +DP S+R I+++L K
Sbjct: 128 VGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLK 187
Query: 180 -KGRTVILTTH---YMDEADLLGDRIAIIAAGKLQCCGS-SVFLKNSF 222
+G+ +IL TH Y+D+ D I I+ G + CGS F++ F
Sbjct: 188 NEGKGIILVTHELEYLDDMDF----ILHISNGTIDFCGSWEEFVEREF 231
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 11/228 (4%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI--- 72
AV +++ + + LG +G GKTTT+ M+ G+ S G I + + I
Sbjct: 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP 77
Query: 73 --RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA 130
R + + Q AL+ +TV +++ F +L++VP+ + + LG+
Sbjct: 78 PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP 137
Query: 131 NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILTT 188
LSGG ++++++ A + + ++DEP S +D R + L K ++ G T I T
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVT 197
Query: 189 HYMDEADLLGDRIAIIAAGKLQCCGS--SVFLK--NSFARGYYLSLDM 232
H EA +GDRIA++ G LQ GS V+ K N+F G+ S M
Sbjct: 198 HDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGSPPM 245
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 7/220 (3%)
Query: 1 MAIQNLSKR-FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
++ +N+ R F N ++G+N + + + LG G+GK+T ++++ ++ G +
Sbjct: 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE 401
Query: 60 IYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK--QVPKDLAQLEISNM 116
+ D+RT + +R + PQ LF E W ++ + +I +
Sbjct: 402 VDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDF 461
Query: 117 IVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
I+ L G + SGG +++LS+A A + + +ILD+ TS VDP + + I +
Sbjct: 462 IISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDG 521
Query: 175 LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
L +Y KG T + T + A LL D+I ++ GK+ G+
Sbjct: 522 LKRYTKGCTTFIITQKIPTA-LLADKILVLHEGKVAGFGT 560
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 114/222 (51%), Gaps = 11/222 (4%)
Query: 1 MAIQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ ++N+SK F GK+ A++ +N+N + LG +GAGKTT + ++ G+ S+G
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 60 IYNHDIRTDMTTI----RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
+ + ++ I R +G+ Q AL+ LT E++ F ++ K+ + +
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
+ L I H LSG Q+++++A A + ++LDEP S +D R S L+
Sbjct: 124 VAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183
Query: 176 --IKYKKGRTVILTTHYMDEADL--LGDRIAIIAAGKLQCCG 213
++ + G T+++ +H D AD+ + DR+ ++ GKL G
Sbjct: 184 KEVQSRLGVTLLVVSH--DPADIFAIADRVGVLVKGKLVQVG 223
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 110/211 (52%), Gaps = 8/211 (3%)
Query: 3 IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+ L K F G L V G+NV+ E ++ +G +G+GK+T + L + G I
Sbjct: 27 VHQLKKSF--GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIID 84
Query: 62 NHDIR---TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMI 117
+++ T++ +R +G+ Q LF +TV ++ ++++ P++ A+ + ++
Sbjct: 85 GINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELL 144
Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
+G+ K + ++LSGG +++++A A + ++ DEPTS +DP + ++ +
Sbjct: 145 DKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204
Query: 178 Y-KKGRTVILTTHYMDEADLLGDRIAIIAAG 207
+G T+++ TH M A +GDR+ + G
Sbjct: 205 LANEGMTMVVVTHEMGFAREVGDRVLFMDGG 235
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 110/211 (52%), Gaps = 8/211 (3%)
Query: 3 IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+ L K F G L V G+NV+ E ++ +G +G+GK+T + L + G I
Sbjct: 6 VHQLKKSF--GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIID 63
Query: 62 NHDIR---TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMI 117
+++ T++ +R +G+ Q LF +TV ++ ++++ P++ A+ + ++
Sbjct: 64 GINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELL 123
Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
+G+ K + ++LSGG +++++A A + ++ DEPTS +DP + ++ +
Sbjct: 124 DKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 183
Query: 178 Y-KKGRTVILTTHYMDEADLLGDRIAIIAAG 207
+G T+++ TH M A +GDR+ + G
Sbjct: 184 LANEGMTMVVVTHEMGFAREVGDRVLFMDGG 214
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 103/201 (51%), Gaps = 13/201 (6%)
Query: 1 MAIQNLSKRFPNGKLA--VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
+ +N+ +P+ K + GLN+ Q + +G++G GK+TT+ ++ + G
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 59 KIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ---LKQVPKDLAQLEIS 114
I DIRT ++ +R +GV Q LF T+ E++ + + + ++ K + +
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLF-ATTIAENIRYGREDVTMDEIEKAVKEANAY 506
Query: 115 NMIVDLGIPHKRTSLANT----LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
+ I+ L PH+ +L LSGG ++++++A A + + ++LDE TS +D S
Sbjct: 507 DFIMKL--PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 171 IWELLIKYKKGRTVILTTHYM 191
+ L K ++GRT I+ H +
Sbjct: 565 VQAALDKAREGRTTIVIAHRL 585
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 101/208 (48%), Gaps = 14/208 (6%)
Query: 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRS 75
+ GL++ + Q + +G +G GK+T + +L +G+ + +I+ ++ +R
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108
Query: 76 LGVCPQYNALFDKLTVEEHMWF-----YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA 130
LG+ Q LFD ++ E++ + +++ + + I I L P K +
Sbjct: 1109 LGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL--PDKYNTRV 1165
Query: 131 ----NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVIL 186
LSGG ++++++A A + ++LDE TS +D S + + E L K ++GRT I+
Sbjct: 1166 GDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIV 1225
Query: 187 TTHYMDEADLLGDRIAIIAAGKLQCCGS 214
H + D I +I GK++ G+
Sbjct: 1226 IAHRLSTIQ-NADLIVVIQNGKVKEHGT 1252
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 103/201 (51%), Gaps = 13/201 (6%)
Query: 1 MAIQNLSKRFPNGKLA--VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
+ +N+ +P+ K + GLN+ Q + +G++G GK+TT+ ++ + G
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 59 KIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ---LKQVPKDLAQLEIS 114
I DIRT ++ +R +GV Q LF T+ E++ + + + ++ K + +
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLF-ATTIAENIRYGREDVTMDEIEKAVKEANAY 506
Query: 115 NMIVDLGIPHKRTSLANT----LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
+ I+ L PH+ +L LSGG ++++++A A + + ++LDE TS +D S
Sbjct: 507 DFIMKL--PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 171 IWELLIKYKKGRTVILTTHYM 191
+ L K ++GRT I+ H +
Sbjct: 565 VQAALDKAREGRTTIVIAHRL 585
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 101/208 (48%), Gaps = 14/208 (6%)
Query: 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRS 75
+ GL++ + Q + +G +G GK+T + +L +G+ + +I+ ++ +R
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108
Query: 76 LGVCPQYNALFDKLTVEEHMWF-----YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA 130
LG+ Q LFD ++ E++ + +++ + + I I L P K +
Sbjct: 1109 LGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL--PDKYNTRV 1165
Query: 131 ----NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVIL 186
LSGG ++++++A A + ++LDE TS +D S + + E L K ++GRT I+
Sbjct: 1166 GDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIV 1225
Query: 187 TTHYMDEADLLGDRIAIIAAGKLQCCGS 214
H + D I +I GK++ G+
Sbjct: 1226 IAHRLSTIQ-NADLIVVIQNGKVKEHGT 1252
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 99/193 (51%), Gaps = 6/193 (3%)
Query: 20 LNVNFYEDQ-ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGV 78
LNV+F + LG GAGK+ + ++ G++ G ++ DI T + RR +G
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI-TPLPPERRGIGF 74
Query: 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQ 138
PQ ALF L+V ++ + L+ V + + M LGI H LSGG +
Sbjct: 75 VPQDYALFPHLSVYRNIAY--GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGER 132
Query: 139 RKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADL 196
+++++A A + R ++LDEP S VD ++ + E L ++ + ++ TH + EA +
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM 192
Query: 197 LGDRIAIIAAGKL 209
L D +A++ G++
Sbjct: 193 LADEVAVMLNGRI 205
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 121/254 (47%), Gaps = 19/254 (7%)
Query: 1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG 56
+ + N+S F G K A+ +++ E + G+ G+GK+T + ++ G++ +SG
Sbjct: 5 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 64
Query: 57 TAKIYNHDIRTDMTTIRRSLGVCPQY--NALFDKLTVEEHMW----FYSQLKQVPKDLAQ 110
+Y+ + R IRR++G+ QY + F + +E + FY VP
Sbjct: 65 DV-LYDGE-RKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKA 122
Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
+E V L + + LSGG +R++++A + +ILDEP G+D +
Sbjct: 123 MEF----VGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD 178
Query: 171 IWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLS 229
+ ++ K+K G+TVIL +H ++ DR+ ++ GK G+ + + ++ S
Sbjct: 179 LLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTS 238
Query: 230 --LDMKSAQLQAED 241
L M+ L+ ED
Sbjct: 239 KMLVMRRLVLKGED 252
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 99/190 (52%), Gaps = 10/190 (5%)
Query: 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR-TDMTTIRRS 75
+ G+N+ Q + +G +G GK+T IS+L+ V G I D+R ++ +R++
Sbjct: 434 LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493
Query: 76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG-IPHKRTSLA---- 130
+ V Q ALF+ T+EE++ + + +A +++N + +P+ +L
Sbjct: 494 VAVVSQEPALFN-CTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRG 552
Query: 131 NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHY 190
LSGG ++++++A A + + ++LDE TS +D S + + L K KGRT I+ H
Sbjct: 553 TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHR 612
Query: 191 MD---EADLL 197
+ ADL+
Sbjct: 613 LSTIRNADLI 622
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 107/225 (47%), Gaps = 12/225 (5%)
Query: 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRS 75
+ GL+ + Q + +G +G GK+T +++L G I +I+T + R
Sbjct: 1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154
Query: 76 LGVCPQYNALFDKLTVEEHMWF-----YSQLKQVPKDLAQLEISNMIVDL--GIPHKRTS 128
+ + Q LFD ++ E++ + + QV + I N I +L G +
Sbjct: 1155 IAIVSQEPTLFD-CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGD 1213
Query: 129 LANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTT 188
LSGG ++++++A A + + ++LDE TS +D S + + E L + ++GRT I+
Sbjct: 1214 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273
Query: 189 HYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMK 233
H ++ + D IA+++ G + G+ L + +G Y L K
Sbjct: 1274 HRLNTV-MNADCIAVVSNGTIIEKGTHTQLMSE--KGAYYKLTQK 1315
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 121/254 (47%), Gaps = 19/254 (7%)
Query: 1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG 56
+ + N+S F G K A+ +++ E + G+ G+GK+T + ++ G++ +SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 57 TAKIYNHDIRTDMTTIRRSLGVCPQY--NALFDKLTVEEHMW----FYSQLKQVPKDLAQ 110
+Y+ + R IRR++G+ QY + F + +E + FY VP
Sbjct: 63 DV-LYDGE-RKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKA 120
Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
+E V L + + LSGG +R++++A + +ILDEP G+D +
Sbjct: 121 MEF----VGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD 176
Query: 171 IWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLS 229
+ ++ K+K G+TVIL +H ++ DR+ ++ GK G+ + + ++ S
Sbjct: 177 LLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTS 236
Query: 230 --LDMKSAQLQAED 241
L M+ L+ ED
Sbjct: 237 KMLVMRRLVLKGED 250
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Query: 1 MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ +N+ R+ P+ + ++ +N++ + ++ +G +G+GK+T ++ +G
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 60 IYNHDIR-TDMTTIRRSLGVCPQYNALFDKLTVE-----------EHMWFYSQLKQVPKD 107
I HD+ D +RR +GV Q N L ++ ++ E + + ++L
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 108 LAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
+++L E N IV LSGG ++++++A A + + +I DE TS +D
Sbjct: 122 ISELREGYNTIV--------GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
S I + K KGRTVI+ H + DRI ++ GK+
Sbjct: 174 SEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKI 215
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Query: 1 MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ +N+ R+ P+ + ++ +N++ + ++ +G +G+GK+T ++ +G
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 60 IYNHDIR-TDMTTIRRSLGVCPQYNALFDKLTVE-----------EHMWFYSQLKQVPKD 107
I HD+ D +RR +GV Q N L ++ ++ E + + ++L
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 108 LAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
+++L E N IV LSGG ++++++A A + + +I DE TS +D
Sbjct: 128 ISELREGYNTIV--------GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
S I + K KGRTVI+ H + DRI ++ GK+
Sbjct: 180 SEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKI 221
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 40/237 (16%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI--R 73
A+ G+++ QI + +G NGAGKTTT+S + G++ G DI + R
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 74 RSLGVCPQYNALFDKLTVEEHM------------------WFYSQLKQVPKDLAQLEISN 115
+ + P+ +F +LTV E++ W +S ++ + L Q
Sbjct: 81 XGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQ----- 135
Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
L TLSGG Q+ L++ A + + DEP+ G+ P ++E++
Sbjct: 136 -------------LGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVI 182
Query: 176 IKY-KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG-SSVFLKNSFARGYYLSL 230
K ++G T++L A + ++ G++ G +S L N R YL +
Sbjct: 183 QKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEXVRKAYLGV 239
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Query: 1 MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ +N+ R+ P+ + ++ +N++ + ++ +G +G+GK+T ++ +G
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 60 IYNHDIR-TDMTTIRRSLGVCPQYNALFDKLTVE-----------EHMWFYSQLKQVPKD 107
I HD+ D +RR +GV Q N L ++ ++ E + + ++L
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 108 LAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
+++L E N IV LSGG ++++++A A + + +I DE TS +D
Sbjct: 124 ISELREGYNTIV--------GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
S I + K KGRTVI+ H + DRI ++ GK+
Sbjct: 176 SEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKI 217
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 105/223 (47%), Gaps = 23/223 (10%)
Query: 1 MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ +N+ R+ P+ + ++ +N++ + ++ +G G+GK+T ++ +G
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 60 IYNHDIR-TDMTTIRRSLGVCPQYNALFDKLTVE-----------EHMWFYSQLKQVPKD 107
I HD+ D +RR +GV Q N L ++ ++ E + + ++L
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 108 LAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
+++L E N IV LSGG ++++++A A + + +I DE TS +D
Sbjct: 124 ISELREGYNTIV--------GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
S I + K KGRTVI+ H + DRI ++ GK+
Sbjct: 176 SEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKI 217
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 103/206 (50%), Gaps = 15/206 (7%)
Query: 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTI 72
K A++ ++ + + + + +G +G+GK+T ++ V SG+ + HD+R +T +
Sbjct: 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415
Query: 73 RRSLGVCPQYNALFDKLTVE------EHMWFYSQLKQVPKDLAQLE-ISNMI--VDLGIP 123
RR + Q LF+ E + Q++Q + +E I NM +D I
Sbjct: 416 RRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIG 475
Query: 124 HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRT 183
TSL SGG ++++++A A + + +ILDE TS +D S R+I L + +K +T
Sbjct: 476 ENGTSL----SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKT 531
Query: 184 VILTTHYMDEADLLGDRIAIIAAGKL 209
V++ H + + D I ++ G++
Sbjct: 532 VLVIAHRLSTIE-QADEILVVDEGEI 556
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 101/201 (50%), Gaps = 8/201 (3%)
Query: 20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMT-TIRRSLGV 78
+N++ + + +F+G +G GK+T I+++ V+SG I H+I+ +T ++R +G+
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419
Query: 79 CPQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNMIVDL--GIPHKRTSLANTL 133
Q N LF TV+E++ + ++V + + I++L G + L
Sbjct: 420 VQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478
Query: 134 SGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDE 193
SGG +++LS+A F+ +ILDE TS +D S I E L K RT ++ H +
Sbjct: 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 538
Query: 194 ADLLGDRIAIIAAGKLQCCGS 214
D+I +I G + G+
Sbjct: 539 IT-HADKIVVIENGHIVETGT 558
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Query: 1 MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ +N+ R+ P+ + ++ +N++ + ++ +G +G+GK+T ++ +G
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 60 IYNHDIR-TDMTTIRRSLGVCPQYNALFDKLTVE-----------EHMWFYSQLKQVPKD 107
I HD+ D +RR +GV Q N L ++ ++ E + + ++L
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 108 LAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
+++L E N IV LSGG ++++++A A + + +I D+ TS +D
Sbjct: 128 ISELREGYNTIV--------GEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYE 179
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
S I + K KGRTVI+ H + DRI ++ GK+
Sbjct: 180 SEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKI 221
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 95/193 (49%), Gaps = 9/193 (4%)
Query: 29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFD 87
+T+ +G +G+GK+T +S+L+ + +SGT + HDIR + +R +G Q LF
Sbjct: 403 VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS 462
Query: 88 KLTVEEHMWFYSQLKQVPKDLAQ--LEISNMIVDL-GIPHKRTSLANT----LSGGMQRK 140
E + V + Q E++N + + P ++ LSGG +++
Sbjct: 463 CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQR 522
Query: 141 LSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDR 200
+++A A + + ++LDE TS +D + + E L + GRTV++ H++ +
Sbjct: 523 IAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIK-NANM 581
Query: 201 IAIIAAGKLQCCG 213
+A++ GK+ G
Sbjct: 582 VAVLDQGKITEYG 594
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 105/223 (47%), Gaps = 23/223 (10%)
Query: 1 MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ +N+ R+ P+ + ++ +N++ + ++ +G +G+GK+T ++ +G
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 60 IYNHDIR-TDMTTIRRSLGVCPQYNALFDKLTVE-----------EHMWFYSQLKQVPKD 107
I HD+ D +RR +GV Q N L ++ ++ E + + ++L
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 108 LAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
+++L E N IV LSGG ++++++A A + + +I DE TS +D
Sbjct: 122 ISELREGYNTIV--------GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
S I + K KGRTVI+ + DRI ++ GK+
Sbjct: 174 SEHVIMRNMHKICKGRTVIIIAARLSTVK-NADRIIVMEKGKI 215
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 105/223 (47%), Gaps = 23/223 (10%)
Query: 1 MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ +N+ R+ P+ + ++ +N++ + ++ +G +G+GK+T ++ +G
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 60 IYNHDIR-TDMTTIRRSLGVCPQYNALFDKLTVE-----------EHMWFYSQLKQVPKD 107
I HD+ D +RR +GV Q N L ++ ++ E + + ++L
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 108 LAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
+++L E N IV LSGG ++++++A A + + +I DE TS +D
Sbjct: 128 ISELREGYNTIV--------GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
S I + K KGRTVI+ + DRI ++ GK+
Sbjct: 180 SEHVIMRNMHKICKGRTVIIIAARLSTVK-NADRIIVMEKGKI 221
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 103/214 (48%), Gaps = 10/214 (4%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ +N+ + +G+ + ++ Q + +G +GAGK+T + +L +SSG +I
Sbjct: 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRI 113
Query: 61 YNHDI-RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
DI + ++R +GV PQ LF+ T+ +++ Y ++ ++ + I D
Sbjct: 114 DGQDISQVTQASLRSHIGVVPQDTVLFND-TIADNIR-YGRVTAGNDEVEAAAQAAGIHD 171
Query: 120 --LGIPHK-RTSLAN---TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
+ P RT + LSGG ++++++A + ++LDE TS +D + R+I
Sbjct: 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA 231
Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG 207
L K RT I+ H + + D+I +I G
Sbjct: 232 SLAKVCANRTTIVVAHRLSTV-VNADQILVIKDG 264
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 19/218 (8%)
Query: 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRS 75
+N ++++ ++ + +G NGAGK+T + +L G L S G + ++ + + R+
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86
Query: 76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVP----KDLAQLEISNMIVDLGIPHKRTSLAN 131
V QY+ L +V E + Q+ + P +D L+ D +R
Sbjct: 87 RAVMRQYSELAFPFSVSEVI----QMGRAPYGGSQDRQALQQVMAQTDCLALAQRDY--R 140
Query: 132 TLSGGMQRKLSVAMAFI------GGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRT 183
LSGG Q+++ +A R + LDEPTS +D Y ++ LL + ++
Sbjct: 141 VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLA 200
Query: 184 VILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221
V H ++ A L DRI ++A GKL CG+ + N+
Sbjct: 201 VCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 94/193 (48%), Gaps = 9/193 (4%)
Query: 29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFD 87
+T+ +G +G+GK+T +S+L+ + +SGT + HDIR + +R +G Q LF
Sbjct: 372 VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS 431
Query: 88 KLTVEEHMWFYSQLKQVPKDLAQ--LEISNMIVDL-GIPHKRTSLANT----LSGGMQRK 140
E + V + Q E++N + + P ++ LSGG +++
Sbjct: 432 CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQR 491
Query: 141 LSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDR 200
+++A A + + ++LDE TS +D + + E L + GRTV++ H + +
Sbjct: 492 IAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANM 550
Query: 201 IAIIAAGKLQCCG 213
+A++ GK+ G
Sbjct: 551 VAVLDQGKITEYG 563
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 114/234 (48%), Gaps = 35/234 (14%)
Query: 1 MAIQNLSKRFPNGK---LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
+ ++N++K + G+ A+ +N+N E + S G +G+GK+T ++++ + + G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEG- 60
Query: 58 AKIYNHDIRT------DMTTIRR-SLGVCPQYNALFDKLTVEEHMWF------------Y 98
++Y +I+T ++T IRR +G Q L LT E++
Sbjct: 61 -EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGE 119
Query: 99 SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158
+ K+ + L E+ + HK N LSGG Q+++++A A ++ DE
Sbjct: 120 ERRKRALECLKXAELEERFAN----HK----PNQLSGGQQQRVAIARALANNPPIILADE 171
Query: 159 PTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
PT +D + I +LL K + G+TV++ TH ++ A G+RI + G+++
Sbjct: 172 PTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVE 224
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 21/207 (10%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
+N+ K F K A++G++++ + +T +G NG+GK+T I+++ G L G N
Sbjct: 11 ENIVKYFGEFK-ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK 69
Query: 64 DIRTDMTTIRRSLGVCPQYNA--LFDKLTVEEHM--------------WFYSQLKQVPKD 107
DI G+ + ++TV E++ FY K +PK+
Sbjct: 70 DITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYK--KWIPKE 127
Query: 108 LAQLEISNMIVD-LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
+E + I++ L + H A LSGG + + + A + + +++DEP +GV P
Sbjct: 128 EEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG 187
Query: 167 SRRSIWELLIKYK-KGRTVILTTHYMD 192
I+ +++ K KG T ++ H +D
Sbjct: 188 LAHDIFNHVLELKAKGITFLIIEHRLD 214
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 21/207 (10%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
+N+ K F K A++G++++ + +T +G NG+GK+T I+++ G L G N
Sbjct: 11 ENIVKYFGEFK-ALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK 69
Query: 64 DIRTDMTTIRRSLGVCPQYNA--LFDKLTVEEHM--------------WFYSQLKQVPKD 107
DI G+ + ++TV E++ FY K +PK+
Sbjct: 70 DITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYK--KWIPKE 127
Query: 108 LAQLEISNMIVD-LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
+E + I++ L + H A LSGG + + + A + + +++DEP +GV P
Sbjct: 128 EEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG 187
Query: 167 SRRSIWELLIKYK-KGRTVILTTHYMD 192
I+ +++ K KG T ++ H +D
Sbjct: 188 LAHDIFNHVLELKAKGITFLIIEHRLD 214
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 10/209 (4%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR-TDMTTIRRSLGVCPQYNALF 86
Q + +G G+GKTT +++LM V G + DIR +++R S+G+ Q LF
Sbjct: 382 QKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF 441
Query: 87 DKLTVEEHMWFYS--QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANT---LSGGMQRKL 141
TV+E++ + + + K+ A+L S+ + T L + LS G ++ L
Sbjct: 442 ST-TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLL 500
Query: 142 SVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRI 201
++ AF+ + +ILDE TS VD + +SI + K +G+T I+ H ++ D I
Sbjct: 501 AITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIK-NADLI 559
Query: 202 AIIAAGKLQCCGSSVFLKNSFARGYYLSL 230
++ G++ G L RG+Y L
Sbjct: 560 IVLRDGEIVEMGKHDELIQK--RGFYYEL 586
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 6/214 (2%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ I +LSK F N + +N ++++ +I +G +G GKTT + L G SG +
Sbjct: 5 LHIGHLSKSFQNTPV-LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL 63
Query: 61 YNHDI---RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
I T++ R LG Q LF LTV ++ + + + I M+
Sbjct: 64 SGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAML 123
Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
GI + LSGG Q++ ++A A ++LDEP S +D RR I E +I
Sbjct: 124 ELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA 183
Query: 178 YKK--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+ G++ + +H +EA DRIA++ G++
Sbjct: 184 ALRANGKSAVFVSHDREEALQYADRIAVMKQGRI 217
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 115/234 (49%), Gaps = 35/234 (14%)
Query: 1 MAIQNLSKRFPNGK---LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
+ ++N++K + G+ A+ +N+N E + S +G +G+GK+T ++++ + + G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG- 60
Query: 58 AKIYNHDIRT------DMTTIRR-SLGVCPQYNALFDKLTVEEH------------MWFY 98
++Y +I+T ++T IRR +G Q L LT E+ M
Sbjct: 61 -EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 99 SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158
+ K+ + L E+ + HK N LSGG Q+++++A A ++ D+
Sbjct: 120 ERRKRALECLKMAELEERFAN----HK----PNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 159 PTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
PT +D + I +LL K + G+TV++ TH ++ A G+RI + G+++
Sbjct: 172 PTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGEVE 224
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 105/228 (46%), Gaps = 21/228 (9%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
+N+ K F K A++G++++ + +T +G NG+GK+T I+++ G L G N
Sbjct: 11 ENIVKYFGEFK-ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENK 69
Query: 64 DIRTDMTTIRRSLGVCPQYNA--LFDKLTVEEHM--------------WFYSQLKQVPKD 107
DI G+ + ++TV E++ FY K +PK+
Sbjct: 70 DITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYK--KWIPKE 127
Query: 108 LAQLEISNMIVD-LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
+E + I++ L + H A LSGG + + + A + + +++D+P +GV P
Sbjct: 128 EEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPG 187
Query: 167 SRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
I+ +++ K KG T ++ H +D D + ++ G++ G
Sbjct: 188 LAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 115/234 (49%), Gaps = 35/234 (14%)
Query: 1 MAIQNLSKRFPNGK---LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
+ ++N++K + G+ A+ +N+N E + S +G +G+GK+T ++++ + + G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG- 60
Query: 58 AKIYNHDIRT------DMTTIRR-SLGVCPQYNALFDKLTVEEH------------MWFY 98
++Y +I+T ++T IRR +G Q L LT E+ M
Sbjct: 61 -EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 99 SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158
+ K+ + L E+ + HK N LSGG Q+++++A A ++ D+
Sbjct: 120 ERRKRALECLKMAELEERFAN----HK----PNQLSGGQQQRVAIARALANNPPIILADQ 171
Query: 159 PTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
PT +D + I +LL K + G+TV++ TH ++ A G+RI + G+++
Sbjct: 172 PTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGEVE 224
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 29/217 (13%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP----VSSGTAKIYNHDIRT---- 67
A +G++++ E+ +T+ +G + +GK+T I + LP + SG D+ T
Sbjct: 23 AADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREE 82
Query: 68 DMTTIR-RSLGVCPQ--YNALFDKLTVEEHM----------WFYSQLKQVPKDLAQLEIS 114
++ IR + + + PQ +L + V EH W +S+L + K +L +
Sbjct: 83 ELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSEL--IEKASEKLRM- 139
Query: 115 NMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
V L S LSGGM++++ +A+A + +ILDEPTS +D ++ I +L
Sbjct: 140 ---VRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQL 196
Query: 175 LIKYKKGR--TVILTTHYMDEADLLGDRIAIIAAGKL 209
L + KK T+I TH + A L D++A+I G L
Sbjct: 197 LKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNL 233
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 107/214 (50%), Gaps = 14/214 (6%)
Query: 4 QNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+N++ +P + A+ +N+ + + +G +G+GK+T S++ + G +
Sbjct: 345 RNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDG 404
Query: 63 HDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
HD+R + ++R + + Q LF+ TV ++ Y++ +Q ++ + E + M +
Sbjct: 405 HDLREYTLASLRNQVALVSQNVHLFND-TVANNIA-YARTEQYSREQIE-EAARMAYAMD 461
Query: 122 IPHKRTSLANT--------LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
+K + +T LSGG ++++++A A + S +ILDE TS +D S R+I
Sbjct: 462 FINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521
Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG 207
L + +K RT ++ H + + D I ++ G
Sbjct: 522 ALDELQKNRTSLVIAHRLSTIE-KADEIVVVEDG 554
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 97/197 (49%), Gaps = 10/197 (5%)
Query: 8 KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT 67
K+ G + G++++ + + S +G +G+GK+T + +L G+L + K++
Sbjct: 11 KKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPT-EGKVFLEGKEV 68
Query: 68 DMTTIR-------RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
D T + R LG Q++ L +LT E++ PK A+ ++ +L
Sbjct: 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL 128
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
G+ K + LSGG Q+++++A A + DEPT +D + + + ++ +K +
Sbjct: 129 GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 181 GRT-VILTTHYMDEADL 196
G T +++ TH + A+L
Sbjct: 189 GGTSIVMVTHERELAEL 205
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 109/217 (50%), Gaps = 14/217 (6%)
Query: 1 MAIQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ +N++ +P ++ A+ +N+ + + +G +G+GK+T S++ + G
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 60 IYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
+ HD+R + ++R + + Q LF+ TV ++ Y++ ++ ++ + E + M
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIA-YARTEEYSREQIE-EAARMAY 458
Query: 119 DLGIPHKRTSLANT--------LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
+ +K + +T LSGG ++++++A A + S +ILDE TS +D S R+
Sbjct: 459 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518
Query: 171 IWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG 207
I L + +K RT ++ H + + D I ++ G
Sbjct: 519 IQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDG 554
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 23/206 (11%)
Query: 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSL 76
+NG+ + E + + +G G GK++ +S L+ + K+ H I+ S+
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD------KVEGH------VAIKGSV 68
Query: 77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI--PHKRTSLAN--- 131
PQ A ++ E++ F QL++ P + ++ ++ DL I RT +
Sbjct: 69 AYVPQ-QAWIQNDSLRENILFGCQLEE-PYYRSVIQACALLPDLEILPSGDRTEIGEKGV 126
Query: 132 TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK---KGRTVILTT 188
LSGG ++++S+A A + + D+P S VD + + I+E +I K K +T IL T
Sbjct: 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 189 HYMDEADLLGDRIAIIAAGKLQCCGS 214
H M + D I +++ GK+ GS
Sbjct: 187 HSMSYLPQV-DVIIVMSGGKISEMGS 211
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 99/222 (44%), Gaps = 21/222 (9%)
Query: 8 KRF--PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI 65
+RF N L VNG V LG NG+GKTT + + G+LP SG I ++
Sbjct: 17 ERFSLENINLEVNGEKV--------IILGPNGSGKTTLLRAISGLLPY-SGNIFINGMEV 67
Query: 66 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK 125
R IR S + Y +TV + ++ Y +LK + +DL LE+ + LG
Sbjct: 68 RKIRNYIRYSTNLPEAYEI---GVTVNDIVYLYEELKGLDRDLF-LEMLKAL-KLGEEIL 122
Query: 126 RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVI 185
R L LS G + ++A V LDEP VD R I + +Y G+ I
Sbjct: 123 RRKLYK-LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--GKEGI 179
Query: 186 LTTHYMDEADLLGDRIAIIAAG-KLQCCGS-SVFLKNSFARG 225
L TH +D +L + A G +LQ S S L++S G
Sbjct: 180 LVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEG 221
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 92/180 (51%), Gaps = 12/180 (6%)
Query: 21 NVNFY--EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-RTDMTTIRRSLG 77
++NF+ + +GH G+GK+T I+ L+ + G KI ++ + + +IR +G
Sbjct: 38 SINFFIPSGTTCALVGHTGSGKST-IAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIG 96
Query: 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL--GIPHKRTSLANT--- 132
+ PQ LF++ T++ ++ Y +L +++ + S + D +P K ++
Sbjct: 97 IVPQDTILFNE-TIKYNI-LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGM 154
Query: 133 -LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYM 191
LSGG ++++++A + + VI DE TS +D + + + +K RT+I+ H +
Sbjct: 155 KLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRL 214
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 101/215 (46%), Gaps = 28/215 (13%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
++++NL + LN + + I + LG NG GK+T + +L+G+ G ++
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV 64
Query: 61 YNHDIRTDMTTIRRSLGVCPQY------NALFDKLTV--EEHMWFYSQLKQVPKDLAQLE 112
Y +S+G PQ+ ++ D + + H+ +++ PK +
Sbjct: 65 Y------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK----PKS-HDYQ 107
Query: 113 ISNMIVD-LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
++ +D L + H +LSGG ++ + +A A + ++LDEPTS +D ++ +
Sbjct: 108 VAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIV 167
Query: 172 WELLIKYKKGR--TVILTTHYMDEADLLGDRIAII 204
LLI + + TV+ TTH ++ + ++ ++
Sbjct: 168 LSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLL 202
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 12/204 (5%)
Query: 3 IQNLSKRFPNGK--LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
Q++S +PN + GL Y ++T+ +G NG+GK+T ++L + + G +
Sbjct: 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78
Query: 61 YNHD-IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
++ D + + Q LF + + E++ + +++ + + + D
Sbjct: 79 DGEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHD 137
Query: 120 L--GIPH----KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
G P + N LSGG ++ +++A A I R +ILD+ TS +D ++ +
Sbjct: 138 FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQR 197
Query: 174 LLIKYKK--GRTVILTTHYMDEAD 195
LL + + RTV+L TH + A+
Sbjct: 198 LLYESPEWASRTVLLITHQLSLAE 221
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 9/194 (4%)
Query: 27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-RTDMTTIRRSLGVCPQYNAL 85
+ I +F G +G GK+T S+L ++G I I + R +G Q +A+
Sbjct: 28 NSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAI 87
Query: 86 FDKLTVEEHMWFYSQLKQVPKDLAQ---LEISNMIVDLGIPHKRTSLAN---TLSGGMQR 139
T+ E++ + + +DL Q L + V+ T + +SGG ++
Sbjct: 88 MAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQ 146
Query: 140 KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGD 199
+L++A AF+ + ++LDE T+ +D S + + L KGRT ++ H + + D
Sbjct: 147 RLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTI-VDAD 205
Query: 200 RIAIIAAGKLQCCG 213
+I I G++ G
Sbjct: 206 KIYFIEKGQITGSG 219
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 93/204 (45%), Gaps = 12/204 (5%)
Query: 3 IQNLSKRFPNGK--LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
Q++S +PN + GL Y ++T+ +G NG+GK+T ++L + + G +
Sbjct: 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78
Query: 61 YNHD-IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
++ D + + Q LF + + E++ + +++ + + + D
Sbjct: 79 DGEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHD 137
Query: 120 L--GIPH----KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
G P + N LSGG ++ +++A A I R +ILD TS +D ++ +
Sbjct: 138 FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197
Query: 174 LLIKYKK--GRTVILTTHYMDEAD 195
LL + + RTV+L T + A+
Sbjct: 198 LLYESPEWASRTVLLITQQLSLAE 221
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 36/234 (15%)
Query: 1 MAIQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ ++N++ + G V +N Q+ + G GAGKT+ + M+MG L S G K
Sbjct: 19 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 78
Query: 60 IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF---YSQLK--------QVPKDL 108
H R + C Q++ + T++E++ F Y + + Q+ +D+
Sbjct: 79 ---HSGR---------ISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDI 125
Query: 109 AQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
++ E N+++ G TLSGG + ++S+A A + +LD P +D +
Sbjct: 126 SKFAEKDNIVLGEG--------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 177
Query: 168 RRSIWE-LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
+ I+E + K +T IL T M+ D+I I+ G G+ L+N
Sbjct: 178 EKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 230
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 36/234 (15%)
Query: 1 MAIQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ ++N++ + G V +N Q+ + G GAGKT+ + M+MG L S G K
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
Query: 60 IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF---YSQLK--------QVPKDL 108
H R + C Q++ + T++E++ F Y + + Q+ +D+
Sbjct: 67 ---HSGR---------ISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDI 113
Query: 109 AQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
++ E N+++ G TLSGG + ++S+A A + +LD P +D +
Sbjct: 114 SKFAEKDNIVLGEG--------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165
Query: 168 RRSIWE-LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
+ I+E + K +T IL T M+ D+I I+ G G+ L+N
Sbjct: 166 EKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 218
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 31/238 (13%)
Query: 26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSL-GVCPQY-- 82
E +I LG NG GKTT +L+G + G+ + I + G QY
Sbjct: 293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLE 352
Query: 83 NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLS 142
NA D L+ WF+ ++ + +L + ++ S N LSGG +KL
Sbjct: 353 NASKDALSTSS--WFFEEVTK------RLNLHRLL---------ESNVNDLSGGELQKLY 395
Query: 143 VAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVI--LTTHYMDEADLLGDR 200
+A + +LD+P+S +D R + + + + + R + + H + D + DR
Sbjct: 396 IAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADR 455
Query: 201 IAIIAAGKLQCCG---SSVFLK---NSFARGYYLSL--DMKSAQLQAEDIGLDGDRIR 250
I I+ G+ + G S V LK N F R ++ D ++ + + IG DR++
Sbjct: 456 I-IVFKGEPEKAGLATSPVTLKTGMNEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQ 512
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 41/234 (17%)
Query: 27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTA----------------KIYNH--DIRTD 68
+ I LG NG GKTT + +L G + + G +IYN+ ++ ++
Sbjct: 25 NTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSN 84
Query: 69 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTS 128
I + +Y + F K TV E + +++ + K E+ NM T+
Sbjct: 85 ELKIVHKIQYV-EYASKFLKGTVNEIL---TKIDERGKKDEVKELLNM----------TN 130
Query: 129 L----ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTV 184
L AN LSGG ++L VA + + + I D+P+S +D R ++ + + + K + V
Sbjct: 131 LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYV 190
Query: 185 ILTTHYMDEADLLGDRIAII-----AAGKLQCCGSSVFLKNSFARGYYLSLDMK 233
I+ H + D L D I II G++ ++ N+F +GY + +MK
Sbjct: 191 IVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMK 244
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 105/223 (47%), Gaps = 13/223 (5%)
Query: 3 IQNLSKRFPNGK--LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
Q++S +PN L + GL ++T+ +G NG+GK+T ++L + + G +
Sbjct: 17 FQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLL 76
Query: 61 YNHDI-RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
+ + + + R + Q +F + +++E++ + K +++ + +
Sbjct: 77 DGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHS 135
Query: 120 L--GIPH----KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
G+P + + LSGG ++ +++A A I +ILD+ TS +D S+ + +
Sbjct: 136 FISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 195
Query: 174 LLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
LL + + R+V+L T ++ + D I + G ++ G+
Sbjct: 196 LLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGT 237
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 35/221 (15%)
Query: 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
G + +N Q+ + G GAGKT+ + M+MG L S G K H R
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HSGR------ 100
Query: 73 RRSLGVCPQYNALFDKLTVEEHMWF---YSQLK--------QVPKDLAQL-EISNMIVDL 120
+ C Q++ + T++E++ F Y + + Q+ +D+++ E N+++
Sbjct: 101 ---ISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 156
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYK 179
G TLS G Q K+S+A A + +LD P +D + + I+E + K
Sbjct: 157 G--------GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 208
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
+T IL T M+ D+I I+ G G+ L+N
Sbjct: 209 ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 248
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 13/147 (8%)
Query: 34 GHNGAGKTTTISMLMGMLPVSSGTAKIYNH---DIRTDMTTIRRSLGVCPQYNALFDKLT 90
G NGAGKTT +++L P +SGT ++ + T+R+ +G ++L +K
Sbjct: 54 GLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVRQHIGFVS--HSLLEKFQ 111
Query: 91 VEEHM-------WFYS-QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLS 142
E + F S + Q D + E ++ +G K LS G ++++
Sbjct: 112 EGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVX 171
Query: 143 VAMAFIGGSRTVILDEPTSGVDPYSRR 169
+A A G + +ILDEP +G+D +R
Sbjct: 172 IARALXGQPQVLILDEPAAGLDFIARE 198
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 105/233 (45%), Gaps = 35/233 (15%)
Query: 1 MAIQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ ++N++ + G V +N Q+ + G GAGKT+ + M+MG L S G K
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
Query: 60 IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMW--------FYSQLK--QVPKDLA 109
H R + C Q++ + T++E++ + S +K Q+ +D++
Sbjct: 67 ---HSGR---------ISFCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDIS 113
Query: 110 QL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
+ E N+++ G TLSGG + ++S+A A + +LD P +D +
Sbjct: 114 KFAEKDNIVLGEG--------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 165
Query: 169 RSIWE-LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
+ I+E + K +T IL T M+ D+I I+ G G+ L+N
Sbjct: 166 KEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 217
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 35/208 (16%)
Query: 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
G + +N+N + ++ + G G+GKT+ + +++G L S G I H R
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR------ 100
Query: 73 RRSLGVCPQYNALFDKLTVEEHMWF---YSQLK--------QVPKDLAQL-EISNMIVDL 120
+ C Q++ + T++E++ F Y + + Q+ +D+ + E N ++
Sbjct: 101 ---VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYK 179
G TLSGG + ++S+A A + +LD P +D ++ ++E + K
Sbjct: 157 G--------GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM 208
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAG 207
+T IL T M+ D+I I+ G
Sbjct: 209 ANKTRILVTSKMEHLR-KADKILILHQG 235
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 35/208 (16%)
Query: 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
G + +N+N + ++ + G G+GKT+ + +++G L S G I H R
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR------ 100
Query: 73 RRSLGVCPQYNALFDKLTVEEHMWF---YSQLK--------QVPKDLAQL-EISNMIVDL 120
+ C Q++ + T++E++ F Y + + Q+ +D+ + E N ++
Sbjct: 101 ---VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYK 179
G TLSGG + ++S+A A + +LD P +D ++ ++E + K
Sbjct: 157 G--------GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM 208
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAG 207
+T IL T M+ D+I I+ G
Sbjct: 209 ANKTRILVTSKMEHLR-KADKILILHQG 235
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 34/220 (15%)
Query: 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
G + +N Q+ + G GAGKT+ + M+MG L S G K H R
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HSGR------ 100
Query: 73 RRSLGVCPQYNALFDKLTVEEHMW--------FYSQLK--QVPKDLAQL-EISNMIVDLG 121
+ C Q++ + T++E++ + S +K Q+ +D+++ E N+++ G
Sbjct: 101 ---ISFCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYKK 180
TLS G Q K+S+A A + +LD P +D + + I+E + K
Sbjct: 157 --------GITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
+T IL T M+ D+I I+ G G+ L+N
Sbjct: 209 NKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 92/204 (45%), Gaps = 12/204 (5%)
Query: 3 IQNLSKRFPNGK--LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
Q++S +PN + GL Y ++T+ +G NG+GK+T ++L + + G +
Sbjct: 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78
Query: 61 YNHD-IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
++ D + + Q LF + + E++ + +++ + + + D
Sbjct: 79 DGEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHD 137
Query: 120 L--GIPH----KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
G P + N L+ G ++ +++A A I R +ILD TS +D ++ +
Sbjct: 138 FISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197
Query: 174 LLIKYKK--GRTVILTTHYMDEAD 195
LL + + RTV+L T + A+
Sbjct: 198 LLYESPEWASRTVLLITQQLSLAE 221
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 35/221 (15%)
Query: 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
G + +N Q+ + G GAGKT+ + M+MG L S G K H R
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HSGR------ 100
Query: 73 RRSLGVCPQYNALFDKLTVEEHMW---------FYSQLK--QVPKDLAQL-EISNMIVDL 120
+ C Q++ + T++E++ + S +K Q+ +D+++ E N+++
Sbjct: 101 ---ISFCSQFSWIMPG-TIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 156
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYK 179
G TLSGG + ++S+A A + +LD P +D + + I+E + K
Sbjct: 157 G--------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 208
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
+T IL T M+ D+I I+ G G+ L+N
Sbjct: 209 ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 248
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 91/212 (42%), Gaps = 32/212 (15%)
Query: 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
N ++ G + VNG N+N D+ G K+ +
Sbjct: 53 NFLEKPSEGAIIVNGQNINLVRDK--------------------------DGQLKVAD-- 84
Query: 65 IRTDMTTIRRSLGVCPQYNALFDKLTVEEH-MWFYSQLKQVPKDLAQLEISNMIVDLGIP 123
+ + +R L + Q+ L+ +TV E+ M Q+ + K A+ + +GI
Sbjct: 85 -KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID 143
Query: 124 HK-RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKG 181
+ + LSGG Q+++S+A A ++ DEPTS +DP + ++ + ++G
Sbjct: 144 ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG 203
Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
+T+++ TH M A + + + GK++ G
Sbjct: 204 KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 34/220 (15%)
Query: 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
G + +N Q+ + G GAGKT+ + M+MG L S G K H R
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HSGR------ 100
Query: 73 RRSLGVCPQYNALFDKLTVEEHMW--------FYSQLK--QVPKDLAQL-EISNMIVDLG 121
+ C Q N+ T++E++ + S +K Q+ +D+++ E N+++ G
Sbjct: 101 ---ISFCSQ-NSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYKK 180
TLSGG + ++S+A A + +LD P +D + + I+E + K
Sbjct: 157 --------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
+T IL T M+ D+I I+ G G+ L+N
Sbjct: 209 NKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 34/220 (15%)
Query: 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
G + +N Q+ + G GAGKT+ + M+MG L S G K H R
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK---HSGR------ 100
Query: 73 RRSLGVCPQYNALFDKLTVEEHM--------WFYSQLK--QVPKDLAQL-EISNMIVDLG 121
+ C Q N+ T++E++ + S +K Q+ +D+++ E N+++ G
Sbjct: 101 ---ISFCSQ-NSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYKK 180
TLSGG + ++S+A A + +LD P +D + + I+E + K
Sbjct: 157 --------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 208
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
+T IL T M+ D+I I+ G G+ L+N
Sbjct: 209 NKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 103/231 (44%), Gaps = 39/231 (16%)
Query: 1 MAIQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
M +++L+ ++ G A+ ++ + Q LG G+GK+T +S + +L + +
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGE 76
Query: 60 IYNHDIRTDMTTI---RRSLGVCPQYNALF----------DKLTVEEHMW-------FYS 99
I + D T+ R++ GV PQ +F + ++ +W S
Sbjct: 77 IQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRS 136
Query: 100 QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159
++Q P L ++VD G LS G ++ + +A + + ++ ++LDEP
Sbjct: 137 VIEQFPGKL-----DFVLVDGGC---------VLSHGHKQLMCLARSVLSKAKILLLDEP 182
Query: 160 TSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
++ +DP + + I L + TVIL + EA L D+ +I K++
Sbjct: 183 SAHLDPVTYQIIRRTLKQAFADCTVILCEARI-EAMLECDQFLVIEENKVR 232
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 94/207 (45%), Gaps = 34/207 (16%)
Query: 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
G + +N+N + ++ + G G+GKT+ + +++G L S G I H R
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR------ 100
Query: 73 RRSLGVCPQYNALFDKLTVEEHMW--------FYSQLK--QVPKDLAQL-EISNMIVDLG 121
+ C Q++ + T++E++ + S +K Q+ +D+ + E N ++ G
Sbjct: 101 ---VSFCSQFSWIMPG-TIKENIIGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 156
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYKK 180
TLSGG + ++S+A A + +LD P +D ++ ++E + K
Sbjct: 157 --------GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 208
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAG 207
+T IL T M+ D+I I+ G
Sbjct: 209 NKTRILVTSKMEHLR-KADKILILHQG 234
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 35/208 (16%)
Query: 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
G + +N+N + ++ + G G+GKT+ + +++G L S G I H R
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR------ 100
Query: 73 RRSLGVCPQYNALFDKLTVEEHMW---------FYSQLK--QVPKDLAQL-EISNMIVDL 120
+ C Q++ + T++E++ + S +K Q+ +D+ + E N ++
Sbjct: 101 ---VSFCSQFSWIMPG-TIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYK 179
G TLSGG + ++S+A A + +LD P +D ++ ++E + K
Sbjct: 157 G--------GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM 208
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAG 207
+T IL T M+ D+I I+ G
Sbjct: 209 ANKTRILVTSKMEHLR-KADKILILHQG 235
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 35/208 (16%)
Query: 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
G + +N+N + ++ + G G+GKT+ + +++G L S G I H R
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIKHSGR------ 100
Query: 73 RRSLGVCPQYNALFDKLTVEEHMW---------FYSQLK--QVPKDLAQL-EISNMIVDL 120
+ C Q++ + T++E++ + S +K Q+ +D+ + E N ++
Sbjct: 101 ---VSFCSQFSWIMPG-TIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYK 179
G TLSGG + ++S+A A + +LD P +D ++ ++E + K
Sbjct: 157 G--------GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM 208
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAG 207
+T IL T M+ D+I I+ G
Sbjct: 209 ANKTRILVTSKMEHLR-KADKILILHQG 235
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 26/183 (14%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
++ +G NG GKTT + ML G+ + G + D+T + PQY
Sbjct: 369 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGK-------VEWDLTVAYK-----PQY----- 411
Query: 88 KLTVEEHMWFYSQLKQV--PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM 145
+ E Y L ++ K + + ++ LGI LSGG +++++A
Sbjct: 412 -IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAA 470
Query: 146 AFIGGSRTVILDEPTSGVDPYSR----RSIWELLIKYKKGRTVILTTHYMDEADLLGDRI 201
+ + +LDEP++ +D R R+I L+ K +K T ++ H + D + DR+
Sbjct: 471 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK--TALVVEHDVLMIDYVSDRL 528
Query: 202 AII 204
+
Sbjct: 529 IVF 531
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 25/192 (13%)
Query: 29 ITSFLGHNGAGKTTTISMLMG-MLPVSSGTAKIYNHDIRT----DMTTIRRSLG------ 77
+ +G NG GKTT + +L G ++P +++ IR ++ L
Sbjct: 105 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRP 164
Query: 78 -VCPQYNALFDKLT---VEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTL 133
V PQY L K V E + ++ + + + +LE+ N++ + L
Sbjct: 165 VVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVL---------DRELHQL 215
Query: 134 SGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMD 192
SGG +++++A A + + DEP+S +D R + ++ + +G+ V++ H +
Sbjct: 216 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA 275
Query: 193 EADLLGDRIAII 204
D L D I ++
Sbjct: 276 VLDYLSDVIHVV 287
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 98/228 (42%), Gaps = 15/228 (6%)
Query: 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM--LPVSSGTAKIYNHDIRTDMTT 71
K + GL+++ + ++ + +G NG+GK+T + L G V+ GT + D+
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 92
Query: 72 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-----PKDLAQLEISNMIVD----LGI 122
R G+ + + V + + L V + L + + +++ + L +
Sbjct: 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 152
Query: 123 PHK--RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
P S+ SGG +++ + + ILDE SG+D + + + + + +
Sbjct: 153 PEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD 212
Query: 181 G-RTVILTTHYMDEADLLG-DRIAIIAAGKLQCCGSSVFLKNSFARGY 226
G R+ I+ THY D + D + ++ G++ G +K +GY
Sbjct: 213 GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGY 260
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 98/228 (42%), Gaps = 15/228 (6%)
Query: 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM--LPVSSGTAKIYNHDIRTDMTT 71
K + GL+++ + ++ + +G NG+GK+T + L G V+ GT + D+
Sbjct: 14 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 73
Query: 72 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-----PKDLAQLEISNMIVD----LGI 122
R G+ + + V + + L V + L + + +++ + L +
Sbjct: 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 133
Query: 123 PHK--RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
P S+ SGG +++ + + ILDE SG+D + + + + + +
Sbjct: 134 PEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD 193
Query: 181 G-RTVILTTHYMDEADLLG-DRIAIIAAGKLQCCGSSVFLKNSFARGY 226
G R+ I+ THY D + D + ++ G++ G +K +GY
Sbjct: 194 GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGY 241
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 26/183 (14%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
++ +G NG GKTT + ML G+ + G + D+T + PQY
Sbjct: 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGK-------VEWDLTVAYK-----PQY----- 425
Query: 88 KLTVEEHMWFYSQLKQV--PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM 145
+ E Y L ++ K + + ++ LGI LSGG +++++A
Sbjct: 426 -IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAA 484
Query: 146 AFIGGSRTVILDEPTSGVDPYSR----RSIWELLIKYKKGRTVILTTHYMDEADLLGDRI 201
+ + +LDEP++ +D R R+I L+ K +K T ++ H + D + DR+
Sbjct: 485 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK--TALVVEHDVLMIDYVSDRL 542
Query: 202 AII 204
+
Sbjct: 543 IVF 545
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 25/192 (13%)
Query: 29 ITSFLGHNGAGKTTTISMLMG-MLPVSSGTAKIYNHDIRT----DMTTIRRSLG------ 77
+ +G NG GKTT + +L G ++P +++ IR ++ L
Sbjct: 119 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRP 178
Query: 78 -VCPQYNALFDKLT---VEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTL 133
V PQY L K V E + ++ + + + +LE+ N++ + L
Sbjct: 179 VVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVL---------DRELHQL 229
Query: 134 SGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMD 192
SGG +++++A A + + DEP+S +D R + ++ + +G+ V++ H +
Sbjct: 230 SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA 289
Query: 193 EADLLGDRIAII 204
D L D I ++
Sbjct: 290 VLDYLSDVIHVV 301
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 30/185 (16%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
++ +G NG GKTT + L G+ + G I D+T + PQY
Sbjct: 313 EVIGIVGPNGIGKTTFVKXLAGVEEPTEGK-------IEWDLTVAYK-----PQY----- 355
Query: 88 KLTVEEHMWFYSQLKQVPKDLAQLEI----SNMIVDLGIPHKRTSLANTLSGGMQRKLSV 143
+ + Y L ++ D ++L + ++ LGI N LSGG +++++
Sbjct: 356 -IKADYEGTVYELLSKI--DASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAI 412
Query: 144 AMAFIGGSRTVILDEPTSGVDPYSR----RSIWELLIKYKKGRTVILTTHYMDEADLLGD 199
A + + +LDEP++ +D R R+I L K +K T ++ H + D + D
Sbjct: 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEK--TALVVEHDVLXIDYVSD 470
Query: 200 RIAII 204
R+ +
Sbjct: 471 RLXVF 475
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 42/228 (18%)
Query: 26 EDQITSFLGHNGAGKTTTISMLMGML-PVSSGTAKIYNHDIRT----DMTTIRRSLG--- 77
E + +G NG GK+T + +L G L P G ++ IR ++ L
Sbjct: 46 EGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGE 105
Query: 78 ----VCPQYNALFDKLT---VEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA 130
V PQY L K V E + + ++ + + LE+ N +++ I H
Sbjct: 106 IRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELEN-VLEREIQH------ 158
Query: 131 NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR----RSIWELLIKYKKGRTVIL 186
LSGG +++++A A + + DEP+S +D R R+I L ++G++V++
Sbjct: 159 --LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL---SEEGKSVLV 213
Query: 187 TTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK--------NSFARGY 226
H + D L D I ++ G+ G +F + N F RGY
Sbjct: 214 VEHDLAVLDYLSDIIHVV-YGEPGVYG--IFSQPKGTRNGINEFLRGY 258
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 34/202 (16%)
Query: 12 NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTT 71
G +N F + +I +G NG GKTT I +L G L G DI +
Sbjct: 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG------QDI-PKLNV 415
Query: 72 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLK------QVPKDLAQLEISNMIVDLGIPHK 125
+ + P++ +L F+ +++ Q D+ + + I+D + H
Sbjct: 416 SMKPQKIAPKFPGTVRQL-------FFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQH- 467
Query: 126 RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR----RSIWELLIKYKKG 181
LSGG +++++ +A + ++DEP++ +D R + I ++ KK
Sbjct: 468 -------LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKK- 519
Query: 182 RTVILTTHYMDEADLLGDRIAI 203
T + H A L D++ +
Sbjct: 520 -TAFIVEHDFIMATYLADKVIV 540
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-YKKGRTVILTTHYM 191
LSGG ++ ++ M+ + + + DEP+S +D R + +++ + VI H +
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281
Query: 192 DEADLLGDRIAII 204
D L D + II
Sbjct: 282 SVLDYLSDFVCII 294
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 89 LTVEEHMWFYSQLKQVPKDLAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147
+TV+E + F+ + + + L L ++ V LG P A TLSGG +++ +A
Sbjct: 767 MTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQP------ATTLSGGEAQRIKLASEL 820
Query: 148 IG---GSRTVILDEPTSGVDPYSRRSIWELLIK-YKKGRTVILTTHYMD 192
G ILDEPT G+ R + E+L + +G TVI+ H +D
Sbjct: 821 RKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD 869
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 86 FDKLTVEEHMWFYSQLKQVPKD-------LAQLEIS-NMIVDLGIPHKRTSL-ANTLSGG 136
F +L++ E + F L ++ L ++E +VD+G+ + S A TLSGG
Sbjct: 409 FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSATTLSGG 468
Query: 137 MQRKLSVAMAFIGGSRTVI--LDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTH 189
+++ +A G VI LDEPT G+ P + + L K + G TVI+ H
Sbjct: 469 ESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 76/161 (47%), Gaps = 7/161 (4%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
+ +F G NG GKTT + + L G IYN +T ++ + P+ +
Sbjct: 36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEI-IYNG---VPITKVKGKIFFLPEEIIVPR 91
Query: 88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147
K++VE+++ + L V + + EI + + + + + L LS G R++ +A
Sbjct: 92 KISVEDYLKAVASLYGV--KVNKNEIMDALESVEVLDLKKKLGE-LSQGTIRRVQLASTL 148
Query: 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTT 188
+ + +LD+P +D S+ + + +++ K + +++ +
Sbjct: 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 189
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 131 NTLSGGMQ------RKLSVAMAFIGGS-RTVILDEPTSGVDPYSRRSIWELLIKYKKGRT 183
+ LSGG Q +L++A A IG +ILDEPT +D R + E+ K K
Sbjct: 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQ 338
Query: 184 VILTTHYMDEADL 196
+I+ TH+ + D+
Sbjct: 339 MIIITHHRELEDV 351
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 90/209 (43%), Gaps = 15/209 (7%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
+I +G NGAGK+T ++ + GM G+ + + T L + Y +
Sbjct: 27 EILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSAT---KLALHRAYLSQQQ 82
Query: 88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147
+W Y L Q K +L ++++ L + K N LSGG +++ +A
Sbjct: 83 TPPFATPVWHYLTLHQHDKTRTEL-LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV 141
Query: 148 I-------GGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMDEADLLGD 199
+ + ++LD+P + +D + ++ ++L ++G +++++H ++
Sbjct: 142 LQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAH 201
Query: 200 RIAIIAAGKLQCCG--SSVFLKNSFARGY 226
R ++ GK+ G V + A+ Y
Sbjct: 202 RAWLLKGGKMLASGRREEVLTPPNLAQAY 230
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 89 LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRT-SLANTLSGGMQRKLSVAMAF 147
+++EE F+ + V + L L VD+G+ + R A TLSGG +++ +A
Sbjct: 825 MSIEEAAEFFEPIAGVHRYLRTL------VDVGLGYVRLGQPAPTLSGGEAQRVKLASEL 878
Query: 148 IGGS--RTV-ILDEPTSGVDPYSRRSIWELLIK-YKKGRTVILTTHYMD 192
S RTV ILDEPT+G+ R + ++ KG TVI+ H +D
Sbjct: 879 QKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD 927
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 116 MIVDLGIPHKRTS-LANTLSGGMQRKLSVAMAFIGGSRTV--ILDEPTSGVDPYSRRSIW 172
++D+G+ + S A TLSGG +++ +A G V +LDEP+ G+ R +
Sbjct: 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLI 563
Query: 173 ELLIKYKK-GRTVILTTHYMD 192
E L + + G T+I+ H D
Sbjct: 564 ETLTRLRDLGNTLIVVEHDED 584
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 89/209 (42%), Gaps = 15/209 (7%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
+I +G NGAGK+T ++ + GM G+ + + T L + Y +
Sbjct: 27 EILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSAT---KLALHRAYLSQQQ 82
Query: 88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147
+W Y L Q K +L ++++ L + K N LSGG +++ +A
Sbjct: 83 TPPFATPVWHYLTLHQHDKTRTEL-LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV 141
Query: 148 I-------GGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMDEADLLGD 199
+ + ++LD+P +D + ++ ++L ++G +++++H ++
Sbjct: 142 LQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAH 201
Query: 200 RIAIIAAGKLQCCG--SSVFLKNSFARGY 226
R ++ GK+ G V + A+ Y
Sbjct: 202 RAWLLKGGKMLASGRREEVLTPPNLAQAY 230
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 37.7 bits (86), Expect = 0.007, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 89 LTVEEHMWFYSQLKQVPKDLAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147
LTV+E F++ + + L L E+ + LG P A LSGG +++ +A
Sbjct: 692 LTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQP------ATELSGGEAQRIKLATEL 745
Query: 148 IGGSR---TVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYM 191
R +LDEPT+G+ P + L+K G TVI H M
Sbjct: 746 RRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM 793
Score = 28.1 bits (61), Expect = 5.4, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 132 TLSGGMQRKLSVAMAFIGGSRTVI--LDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTT 188
TLS G ++L +A V+ LDEP++G+ P ++ L K+ G ++ +
Sbjct: 379 TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVE 438
Query: 189 HYMD---EADLLGD 199
H +D AD L D
Sbjct: 439 HDLDVIRRADWLVD 452
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 15/111 (13%)
Query: 89 LTVEEHMWFYSQLKQVPKDLAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147
+TVE+ + F++ + ++ + L L ++ + LG P A TLSGG +++ +A
Sbjct: 505 MTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQP------ATTLSGGEAQRVKLAAEL 558
Query: 148 ---IGGSRTVILDEPTSG--VDPYSRRSIWELLIK-YKKGRTVILTTHYMD 192
G ILDEPT+G VD +R + ++L + G TV++ H +D
Sbjct: 559 HRRSNGRTLYILDEPTTGLHVDDIAR--LLDVLHRLVDNGDTVLVIEHNLD 607
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 15/111 (13%)
Query: 89 LTVEEHMWFYSQLKQVPKDLAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147
+TVE+ + F++ + ++ + L L ++ + LG P A TLSGG +++ +A
Sbjct: 807 MTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQP------ATTLSGGEAQRVKLAAEL 860
Query: 148 ---IGGSRTVILDEPTSG--VDPYSRRSIWELLIK-YKKGRTVILTTHYMD 192
G ILDEPT+G VD +R + ++L + G TV++ H +D
Sbjct: 861 HRRSNGRTLYILDEPTTGLHVDDIAR--LLDVLHRLVDNGDTVLVIEHNLD 909
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 36.6 bits (83), Expect = 0.013, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 15/110 (13%)
Query: 90 TVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL-ANTLSGGMQRKLSVAMAF- 147
TVE+ + F++ + ++ + L L D+G+ + + A TLSGG +++ +A
Sbjct: 808 TVEDALDFFASIPKIKRKLETL------YDVGLGYXKLGQPATTLSGGEAQRVKLAAELH 861
Query: 148 --IGGSRTVILDEPTSG--VDPYSRRSIWELLIKY-KKGRTVILTTHYMD 192
G ILDEPT+G VD +R + ++L + G TV++ H +D
Sbjct: 862 RRSNGRTLYILDEPTTGLHVDDIAR--LLDVLHRLVDNGDTVLVIEHNLD 909
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 86/209 (41%), Gaps = 15/209 (7%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
+I +G NGAGK+T ++ G G+ + + T L + Y +
Sbjct: 27 EILHLVGPNGAGKSTLLARXAGXT-SGKGSIQFAGQPLEAWSAT---KLALHRAYLSQQQ 82
Query: 88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147
+W Y L Q K +L ++++ L + K N LSGG +++ +A
Sbjct: 83 TPPFATPVWHYLTLHQHDKTRTEL-LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV 141
Query: 148 I-------GGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMDEADLLGD 199
+ + ++LDEP + +D + ++ ++L ++G ++ ++H ++
Sbjct: 142 LQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSHDLNHTLRHAH 201
Query: 200 RIAIIAAGKLQCCG--SSVFLKNSFARGY 226
R ++ GK G V + A+ Y
Sbjct: 202 RAWLLKGGKXLASGRREEVLTPPNLAQAY 230
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 86/209 (41%), Gaps = 15/209 (7%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
+I +G NGAGK+T ++ G G+ + + T L + Y +
Sbjct: 27 EILHLVGPNGAGKSTLLARXAGXT-SGKGSIQFAGQPLEAWSAT---KLALHRAYLSQQQ 82
Query: 88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147
+W Y L Q K +L ++++ L + K N LSGG +++ +A
Sbjct: 83 TPPFATPVWHYLTLHQHDKTRTEL-LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV 141
Query: 148 I-------GGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMDEADLLGD 199
+ + ++LDEP + +D + ++ ++L ++G ++ ++H ++
Sbjct: 142 LQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSHDLNHTLRHAH 201
Query: 200 RIAIIAAGKLQCCG--SSVFLKNSFARGY 226
R ++ GK G V + A+ Y
Sbjct: 202 RAWLLKGGKXLASGRREEVLTPPNLAQAY 230
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 136 GMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
G+ +L++++ G +ILDEPT +D RR + ++ +Y KK VIL +H
Sbjct: 67 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 121
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMD 192
LSGG + KL +A ++LDEPT+ +D S ++ + L +++ G VI+ TH +
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 193 EADLLGDRIAIIAAGKLQCCG 213
L + + + G++ G
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSG 980
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 1 MAIQNLSKRFP-NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ + N+ ++P K + +N + +G NGAGK+T I++L G L +SG +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG--E 729
Query: 60 IYNHD 64
+Y H+
Sbjct: 730 VYTHE 734
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 113 ISNMIVDLGIPHKRTSLA-NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
I + +++ G + ++ + LSGG + KL++A A + + ++LDEPT+ +D
Sbjct: 528 IKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 136 GMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
G+ +L++++ G +ILDEPT +D RR + ++ +Y KK VIL +H
Sbjct: 63 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 117
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 136 GMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
G+ +L++++ G +ILDEPT +D RR + ++ +Y KK VIL +H
Sbjct: 98 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 152
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 136 GMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
G+ +L++++ G +ILDEPT +D RR + ++ +Y KK VIL +H
Sbjct: 93 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 147
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 136 GMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
G+ +L++++ G +ILDEPT +D RR + ++ +Y KK VIL +H
Sbjct: 278 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 332
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 136 GMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
G+ +L++++ G +ILDEPT +D RR + ++ +Y KK VIL +H
Sbjct: 258 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 312
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAF----IGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178
P +R + LSGG + + +A+ F I S +LDE S +D Y+ LL +
Sbjct: 210 PGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN 269
Query: 179 KKGRTVILTTH---YMDEADLL 197
K I+ TH M+ ADLL
Sbjct: 270 SKHTQFIVITHNKIVMEAADLL 291
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.3 bits (72), Expect = 0.24, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 106 KDLAQLEISNMIVDLGIPHKRTSLANT--LSGGMQRKLSVAMAFIGGSRTVILDEPTSGV 163
+ L + EI LG+ + S + LSGG + KL +A ++LDEPT+ +
Sbjct: 867 RPLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYL 926
Query: 164 DPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
D S ++ + L +++ G VI+ TH + L + + + G+
Sbjct: 927 DRDSLGALSKALKEFEGG--VIIITHSAEFTKNLTEEVWAVKDGR 969
Score = 32.3 bits (72), Expect = 0.29, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 113 ISNMIVDLGIPHKRTSLA-NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
I + +++ G + + + LSGG + KL++A A + + ++LDEPT+ +D
Sbjct: 522 IKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 31.6 bits (70), Expect = 0.47, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 3 IQNLSKRFP-NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+ N ++P K + +N + +G NGAGK+T I++L G L +SG ++Y
Sbjct: 668 VTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG--EVY 725
Query: 62 NHD 64
H+
Sbjct: 726 THE 728
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.3 bits (72), Expect = 0.24, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 106 KDLAQLEISNMIVDLGIPHKRTSLANT--LSGGMQRKLSVAMAFIGGSRTVILDEPTSGV 163
+ L + EI LG+ + S + LSGG + KL +A ++LDEPT+ +
Sbjct: 873 RPLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYL 932
Query: 164 DPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
D S ++ + L +++ G VI+ TH + L + + + G+
Sbjct: 933 DRDSLGALSKALKEFEGG--VIIITHSAEFTKNLTEEVWAVKDGR 975
Score = 32.3 bits (72), Expect = 0.29, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 113 ISNMIVDLGIPHKRTSLA-NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
I + +++ G + + + LSGG + KL++A A + + ++LDEPT+ +D
Sbjct: 528 IKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 31.6 bits (70), Expect = 0.47, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 3 IQNLSKRFP-NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+ N ++P K + +N + +G NGAGK+T I++L G L +SG ++Y
Sbjct: 674 VTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG--EVY 731
Query: 62 NHD 64
H+
Sbjct: 732 THE 734
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/227 (19%), Positives = 95/227 (41%), Gaps = 13/227 (5%)
Query: 12 NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG--MLPVSSGTAKIYNHDI--RT 67
+G+ + G+N+ + ++ + +G NGAGK+T +L G V G + +I +
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 68 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK-----QVPKDLAQLEISNMIVDLGI 122
R+ L + QY +T+ + Q K V + +++ + ++D
Sbjct: 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDE 133
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
+ L SGG +++ + + +LDE SG+D + + + + +G
Sbjct: 134 SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVV-ARGVNAMRGP 192
Query: 183 T--VILTTHYMDEADLL-GDRIAIIAAGKLQCCGSSVFLKNSFARGY 226
++ THY + + D++ ++ G++ G A+GY
Sbjct: 193 NFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGY 239
>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 17/74 (22%)
Query: 29 ITSFLGHNGAGKTTTISMLMGMLP--------VSSGT------AKIYNHDIRTDMTTIRR 74
+ F+G NG+GKTTTI+ L L +S T ++ H R + I+
Sbjct: 131 VIXFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKH 190
Query: 75 SLGVCP---QYNAL 85
S G P Y+A+
Sbjct: 191 SYGADPAAVAYDAI 204
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 17/74 (22%)
Query: 29 ITSFLGHNGAGKTTTISMLMGMLP--------VSSGT------AKIYNHDIRTDMTTIRR 74
+ F+G NG+GKTTTI+ L L +S T ++ H R + I+
Sbjct: 131 VIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKH 190
Query: 75 SLGVCP---QYNAL 85
S G P Y+A+
Sbjct: 191 SYGADPAAVAYDAI 204
>pdb|3TTS|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTY|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
Length = 675
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 72 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL 111
+RRS+G C +Y+ + EH + + ++ K+L QL
Sbjct: 347 LRRSVGACEKYHGAVIEHVGHEHTRVFRECAELGKELQQL 386
>pdb|1K1X|A Chain A, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
pdb|1K1X|B Chain B, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
pdb|1K1Y|A Chain A, Crystal Structure Of Thermococcus Litoralis
4-Alpha-Glucanotransferase Complexed With Acarbose
pdb|1K1Y|B Chain B, Crystal Structure Of Thermococcus Litoralis
4-Alpha-Glucanotransferase Complexed With Acarbose
Length = 659
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 165 PYSRRSIWELLIK---YKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
P+ RR++WE +IK Y K IL + A+++ + IA K GS
Sbjct: 367 PHLRRTVWENIIKAQRYLKPENKILDVDFDGRAEIMVENDGFIATIKPHYGGS 419
>pdb|1C1X|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 130 ANTLSGGMQRKLSVAMAFIGGSRTVI-LDEPTSGVDPYSRRSIWELLIKYKKGRTVILTT 188
A L+G M K++V+ +GG ++VI L P +DP S W +++ L+
Sbjct: 56 AGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDP----STWARILRIHAENIDKLSG 111
Query: 189 HYMDEADL 196
+Y D+
Sbjct: 112 NYWTGPDV 119
>pdb|1BW9|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 130 ANTLSGGMQRKLSVAMAFIGGSRTVI-LDEPTSGVDPYSRRSIWELLIKYKKGRTVILTT 188
A L+G M K++V+ +GG ++VI L P +DP S W +++ L+
Sbjct: 57 AGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDP----STWARILRIHAENIDKLSG 112
Query: 189 HYMDEADL 196
+Y D+
Sbjct: 113 NYWTGPDV 120
>pdb|1BXG|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 130 ANTLSGGMQRKLSVAMAFIGGSRTVI-LDEPTSGVDPYSRRSIWELLIKYKKGRTVILTT 188
A L+G M K++V+ +GG ++VI L P +DP S W +++ L+
Sbjct: 57 AGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDP----STWARILRIHAENIDKLSG 112
Query: 189 HYMDEADL 196
+Y D+
Sbjct: 113 NYWTGPDV 120
>pdb|1BW9|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 130 ANTLSGGMQRKLSVAMAFIGGSRTVI-LDEPTSGVDPYSRRSIWELLIKYKKGRTVILTT 188
A L+G M K++V+ +GG ++VI L P +DP S W +++ L+
Sbjct: 57 AGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDP----STWARILRIHAENIDKLSG 112
Query: 189 HYMDEADL 196
+Y D+
Sbjct: 113 NYWTGPDV 120
>pdb|1C1X|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 130 ANTLSGGMQRKLSVAMAFIGGSRTVI-LDEPTSGVDPYSRRSIWELLIKYKKGRTVILTT 188
A L+G M K++V+ +GG ++VI L P +DP S W +++ L+
Sbjct: 56 AGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDP----STWARILRIHAENIDKLSG 111
Query: 189 HYMDEADL 196
+Y D+
Sbjct: 112 NYWTGPDV 119
>pdb|1BXG|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 130 ANTLSGGMQRKLSVAMAFIGGSRTVI-LDEPTSGVDPYSRRSIWELLIKYKKGRTVILTT 188
A L+G M K++V+ +GG ++VI L P +DP S W +++ L+
Sbjct: 57 AGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDP----STWARILRIHAENIDKLSG 112
Query: 189 HYMDEADL 196
+Y D+
Sbjct: 113 NYWTGPDV 120
>pdb|1C1D|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 130 ANTLSGGMQRKLSVAMAFIGGSRTVI-LDEPTSGVDPYSRRSIWELLIKYKKGRTVILTT 188
A L+G M K++V+ +GG ++VI L P +DP S W +++ L+
Sbjct: 56 AGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDP----STWARILRIHAENIDKLSG 111
Query: 189 HYMDEADL 196
+Y D+
Sbjct: 112 NYWTGPDV 119
>pdb|1C1D|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 130 ANTLSGGMQRKLSVAMAFIGGSRTVI-LDEPTSGVDPYSRRSIWELLIKYKKGRTVILTT 188
A L+G M K++V+ +GG ++VI L P +DP S W +++ L+
Sbjct: 56 AGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDP----STWARILRIHAENIDKLSG 111
Query: 189 HYMDEADL 196
+Y D+
Sbjct: 112 NYWTGPDV 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,980,265
Number of Sequences: 62578
Number of extensions: 260383
Number of successful extensions: 957
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 157
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)