Query psy7367
Match_columns 251
No_of_seqs 315 out of 1086
Neff 7.8
Searched_HMMs 46136
Date Sat Aug 17 00:54:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1.1E-69 2.4E-74 451.3 24.8 219 1-220 3-225 (240)
2 COG1135 AbcC ABC-type metal io 100.0 1.4E-65 3E-70 446.2 23.2 218 1-218 2-229 (339)
3 COG1125 OpuBA ABC-type proline 100.0 1.8E-65 3.9E-70 434.8 22.7 218 1-219 2-224 (309)
4 COG3839 MalK ABC-type sugar tr 100.0 2.1E-63 4.5E-68 444.4 23.7 218 1-220 4-223 (338)
5 COG1131 CcmA ABC-type multidru 100.0 2.4E-62 5.3E-67 435.2 29.1 224 1-224 5-230 (293)
6 COG1127 Ttg2A ABC-type transpo 100.0 5.1E-63 1.1E-67 417.1 22.8 220 1-221 9-236 (263)
7 COG1116 TauB ABC-type nitrate/ 100.0 6.8E-63 1.5E-67 420.2 23.2 205 1-210 4-212 (248)
8 COG4555 NatA ABC-type Na+ tran 100.0 1.4E-63 3.1E-68 410.3 18.2 221 1-221 2-223 (245)
9 COG1120 FepC ABC-type cobalami 100.0 4.9E-63 1.1E-67 427.2 22.5 217 1-218 3-226 (258)
10 COG3842 PotA ABC-type spermidi 100.0 2.9E-63 6.2E-68 445.6 21.5 216 1-218 6-224 (352)
11 COG2884 FtsE Predicted ATPase 100.0 2.8E-62 6.1E-67 399.4 20.5 213 1-213 2-219 (223)
12 PRK13537 nodulation ABC transp 100.0 6.6E-61 1.4E-65 428.7 30.0 220 1-221 8-228 (306)
13 COG1136 SalX ABC-type antimicr 100.0 5.1E-61 1.1E-65 407.4 26.5 209 1-210 2-221 (226)
14 COG3638 ABC-type phosphate/pho 100.0 5.6E-62 1.2E-66 409.8 19.9 227 1-227 4-244 (258)
15 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 8.8E-61 1.9E-65 411.5 23.5 215 1-219 5-226 (254)
16 PRK13536 nodulation factor exp 100.0 7.9E-60 1.7E-64 426.9 30.5 220 1-221 42-262 (340)
17 TIGR02314 ABC_MetN D-methionin 100.0 9.6E-60 2.1E-64 426.3 28.9 219 1-219 2-229 (343)
18 COG1118 CysA ABC-type sulfate/ 100.0 8.3E-61 1.8E-65 415.7 20.9 218 1-220 3-227 (345)
19 COG1122 CbiO ABC-type cobalt t 100.0 7.2E-60 1.6E-64 405.7 24.8 219 1-220 4-228 (235)
20 PRK11650 ugpC glycerol-3-phosp 100.0 1.9E-59 4E-64 426.9 28.9 217 1-218 4-222 (356)
21 COG1124 DppF ABC-type dipeptid 100.0 5E-60 1.1E-64 400.1 22.7 219 1-221 4-232 (252)
22 TIGR03522 GldA_ABC_ATP gliding 100.0 4.8E-59 1E-63 415.9 29.6 220 1-221 3-222 (301)
23 TIGR03265 PhnT2 putative 2-ami 100.0 3.6E-59 7.9E-64 424.5 28.8 217 1-219 5-223 (353)
24 TIGR01288 nodI ATP-binding ABC 100.0 8.2E-59 1.8E-63 414.7 29.9 220 1-221 5-225 (303)
25 cd03261 ABC_Org_Solvent_Resist 100.0 7.1E-59 1.5E-63 400.4 28.4 218 1-219 1-225 (235)
26 PRK11432 fbpC ferric transport 100.0 4.2E-59 9.1E-64 423.7 28.3 217 1-219 7-225 (351)
27 cd03265 ABC_DrrA DrrA is the A 100.0 6.3E-59 1.4E-63 397.0 27.8 216 1-217 1-218 (220)
28 COG1117 PstB ABC-type phosphat 100.0 7.6E-60 1.6E-64 391.5 20.4 217 1-219 8-236 (253)
29 TIGR03258 PhnT 2-aminoethylpho 100.0 9.5E-59 2.1E-63 422.8 28.8 217 1-219 6-227 (362)
30 cd03263 ABC_subfamily_A The AB 100.0 1.5E-58 3.3E-63 394.3 27.3 217 1-217 1-218 (220)
31 TIGR01188 drrA daunorubicin re 100.0 1.3E-58 2.8E-63 413.2 27.6 215 8-223 1-216 (302)
32 cd03259 ABC_Carb_Solutes_like 100.0 1.7E-58 3.7E-63 392.4 26.1 211 1-213 1-213 (213)
33 TIGR00960 3a0501s02 Type II (G 100.0 1.4E-58 3.1E-63 393.6 25.4 209 1-209 2-216 (216)
34 PRK09452 potA putrescine/sperm 100.0 4.2E-58 9.2E-63 420.1 28.4 217 1-219 15-233 (375)
35 cd03266 ABC_NatA_sodium_export 100.0 3.9E-58 8.5E-63 391.3 26.2 212 1-213 2-218 (218)
36 COG4152 ABC-type uncharacteriz 100.0 3.4E-59 7.5E-64 394.2 19.4 225 1-229 3-229 (300)
37 COG1137 YhbG ABC-type (unclass 100.0 5.1E-60 1.1E-64 388.9 13.7 227 1-228 5-237 (243)
38 PRK10851 sulfate/thiosulfate t 100.0 5.5E-58 1.2E-62 416.8 28.2 217 1-219 3-225 (353)
39 PRK11000 maltose/maltodextrin 100.0 8.8E-58 1.9E-62 417.9 28.6 216 1-218 4-221 (369)
40 PRK11153 metN DL-methionine tr 100.0 1.1E-57 2.3E-62 413.9 28.5 219 1-219 2-229 (343)
41 cd03264 ABC_drug_resistance_li 100.0 9.3E-58 2E-62 387.3 26.3 211 1-213 1-211 (211)
42 PRK11607 potG putrescine trans 100.0 1.3E-57 2.7E-62 417.4 29.0 217 1-219 20-238 (377)
43 COG0411 LivG ABC-type branched 100.0 9.7E-59 2.1E-63 392.4 19.5 220 1-221 5-240 (250)
44 cd03219 ABC_Mj1267_LivG_branch 100.0 1.8E-57 4E-62 391.5 27.6 217 1-218 1-230 (236)
45 cd03218 ABC_YhbG The ABC trans 100.0 2.1E-57 4.6E-62 390.2 27.4 217 1-218 1-220 (232)
46 cd03296 ABC_CysA_sulfate_impor 100.0 1.6E-57 3.4E-62 393.1 26.7 217 1-219 3-225 (239)
47 cd03301 ABC_MalK_N The N-termi 100.0 1.8E-57 4E-62 385.8 26.3 211 1-213 1-213 (213)
48 cd03256 ABC_PhnC_transporter A 100.0 2.2E-57 4.8E-62 392.0 27.1 219 1-219 1-233 (241)
49 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.4E-57 3E-62 387.8 25.1 208 1-209 1-218 (218)
50 PRK13647 cbiO cobalt transport 100.0 3.5E-57 7.7E-62 398.8 28.1 218 1-218 5-225 (274)
51 TIGR01186 proV glycine betaine 100.0 1.8E-57 3.9E-62 413.9 26.8 211 8-219 1-218 (363)
52 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.8E-57 6.1E-62 386.8 26.4 211 1-215 1-218 (220)
53 cd03258 ABC_MetN_methionine_tr 100.0 4E-57 8.7E-62 388.9 27.3 217 1-218 2-228 (233)
54 cd03269 ABC_putative_ATPase Th 100.0 3E-57 6.5E-62 383.9 26.0 209 1-213 1-210 (210)
55 PRK13637 cbiO cobalt transport 100.0 6.2E-57 1.3E-61 399.7 28.9 218 1-218 3-232 (287)
56 cd03260 ABC_PstB_phosphate_tra 100.0 3.6E-57 7.8E-62 387.8 25.8 214 1-216 1-225 (227)
57 cd03292 ABC_FtsE_transporter F 100.0 4.5E-57 9.7E-62 383.5 26.1 209 1-209 1-214 (214)
58 cd03295 ABC_OpuCA_Osmoprotecti 100.0 8.3E-57 1.8E-61 389.3 28.2 219 1-219 1-224 (242)
59 cd03268 ABC_BcrA_bacitracin_re 100.0 3.6E-57 7.7E-62 382.9 25.1 207 1-213 1-208 (208)
60 TIGR02673 FtsE cell division A 100.0 4.4E-57 9.6E-62 383.8 25.4 208 1-208 2-214 (214)
61 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.2E-56 2.7E-61 386.9 28.2 219 1-221 2-222 (236)
62 PRK09536 btuD corrinoid ABC tr 100.0 6.4E-57 1.4E-61 415.0 27.9 217 1-218 4-226 (402)
63 PRK13651 cobalt transporter AT 100.0 1.1E-56 2.4E-61 401.2 28.0 218 1-219 3-253 (305)
64 PRK13634 cbiO cobalt transport 100.0 1.2E-56 2.5E-61 398.6 27.9 217 1-218 3-233 (290)
65 cd03224 ABC_TM1139_LivF_branch 100.0 9.6E-57 2.1E-61 383.5 26.1 215 1-218 1-219 (222)
66 PRK09493 glnQ glutamine ABC tr 100.0 1.8E-56 4E-61 386.6 27.9 218 1-219 2-224 (240)
67 TIGR00972 3a0107s01c2 phosphat 100.0 2.6E-56 5.6E-61 387.3 28.5 217 1-219 2-231 (247)
68 PRK10908 cell division protein 100.0 1.6E-56 3.4E-61 382.8 26.6 211 1-211 2-217 (222)
69 PRK13643 cbiO cobalt transport 100.0 2.3E-56 5E-61 396.3 28.6 218 1-219 2-232 (288)
70 PRK13641 cbiO cobalt transport 100.0 2.6E-56 5.6E-61 395.8 28.7 218 1-219 3-233 (287)
71 PRK15079 oligopeptide ABC tran 100.0 2E-56 4.3E-61 403.5 27.9 219 1-219 9-250 (331)
72 PRK13650 cbiO cobalt transport 100.0 2.2E-56 4.7E-61 394.8 27.3 218 1-219 5-228 (279)
73 PRK11264 putative amino-acid A 100.0 3.3E-56 7.1E-61 387.0 28.0 218 1-219 4-232 (250)
74 TIGR02315 ABC_phnC phosphonate 100.0 7.9E-57 1.7E-61 389.2 24.0 218 1-218 2-233 (243)
75 COG4175 ProV ABC-type proline/ 100.0 1.6E-57 3.4E-62 396.2 19.6 219 1-219 5-253 (386)
76 cd03262 ABC_HisP_GlnQ_permease 100.0 2E-56 4.4E-61 379.2 25.7 208 1-209 1-213 (213)
77 PRK11629 lolD lipoprotein tran 100.0 3.9E-56 8.5E-61 383.0 27.7 213 1-214 6-228 (233)
78 cd03226 ABC_cobalt_CbiO_domain 100.0 1.1E-56 2.4E-61 379.3 23.8 203 2-210 1-205 (205)
79 TIGR03411 urea_trans_UrtD urea 100.0 4.1E-56 9E-61 384.6 27.6 217 1-218 3-229 (242)
80 cd03225 ABC_cobalt_CbiO_domain 100.0 1.6E-56 3.5E-61 379.5 24.6 207 2-208 1-211 (211)
81 PRK11831 putative ABC transpor 100.0 4E-56 8.7E-61 391.1 27.7 218 1-219 8-232 (269)
82 PRK10070 glycine betaine trans 100.0 3.6E-56 7.8E-61 409.8 28.5 219 1-219 5-253 (400)
83 PRK13636 cbiO cobalt transport 100.0 6.4E-56 1.4E-60 392.5 28.0 219 1-219 6-230 (283)
84 PRK13646 cbiO cobalt transport 100.0 6.8E-56 1.5E-60 392.9 27.9 217 1-218 3-233 (286)
85 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4.4E-56 9.6E-61 390.8 26.2 216 4-220 28-250 (269)
86 PRK13652 cbiO cobalt transport 100.0 1.1E-55 2.3E-60 389.9 28.6 219 1-219 4-226 (277)
87 PRK13644 cbiO cobalt transport 100.0 7.9E-56 1.7E-60 390.3 27.5 217 1-218 2-222 (274)
88 PRK10619 histidine/lysine/argi 100.0 1.3E-55 2.7E-60 385.2 28.5 218 1-219 6-240 (257)
89 PRK13638 cbiO cobalt transport 100.0 9.4E-56 2E-60 389.0 27.6 217 1-218 2-223 (271)
90 PRK13639 cbiO cobalt transport 100.0 1.4E-55 3.1E-60 388.8 28.4 219 1-219 2-225 (275)
91 TIGR02211 LolD_lipo_ex lipopro 100.0 7.7E-56 1.7E-60 377.9 25.9 209 1-210 2-220 (221)
92 PRK10895 lipopolysaccharide AB 100.0 7.4E-56 1.6E-60 383.0 26.1 217 1-218 4-224 (241)
93 PRK11124 artP arginine transpo 100.0 1.3E-55 2.8E-60 381.7 27.6 217 1-218 3-228 (242)
94 PRK13631 cbiO cobalt transport 100.0 1.1E-55 2.4E-60 397.0 28.1 217 1-218 22-263 (320)
95 PRK13548 hmuV hemin importer A 100.0 1.2E-55 2.6E-60 385.9 27.5 217 1-218 3-228 (258)
96 PRK14268 phosphate ABC transpo 100.0 1.8E-55 4E-60 384.5 28.3 217 1-219 13-241 (258)
97 cd03257 ABC_NikE_OppD_transpor 100.0 9.7E-56 2.1E-60 378.5 26.0 213 1-213 2-228 (228)
98 COG0410 LivF ABC-type branched 100.0 4.9E-56 1.1E-60 373.3 23.2 219 1-221 4-227 (237)
99 PRK13635 cbiO cobalt transport 100.0 1.5E-55 3.3E-60 389.4 27.5 218 1-219 6-228 (279)
100 PRK14247 phosphate ABC transpo 100.0 2.3E-55 5.1E-60 381.8 28.2 218 1-219 4-233 (250)
101 PRK11248 tauB taurine transpor 100.0 1.6E-55 3.5E-60 384.6 27.0 210 1-215 2-215 (255)
102 PRK14267 phosphate ABC transpo 100.0 2.5E-55 5.4E-60 382.2 28.1 218 1-219 5-236 (253)
103 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.3E-55 2.9E-60 374.1 25.5 209 1-213 1-211 (211)
104 TIGR03415 ABC_choXWV_ATP choli 100.0 2.4E-55 5.2E-60 401.9 29.0 205 15-219 38-253 (382)
105 PRK13649 cbiO cobalt transport 100.0 3E-55 6.4E-60 387.4 28.3 217 1-218 3-232 (280)
106 PRK11308 dppF dipeptide transp 100.0 3E-55 6.6E-60 395.3 28.9 220 1-220 6-244 (327)
107 TIGR03005 ectoine_ehuA ectoine 100.0 3.8E-55 8.3E-60 381.0 28.3 218 1-219 1-235 (252)
108 TIGR03410 urea_trans_UrtE urea 100.0 1.3E-55 2.9E-60 378.7 25.1 214 1-218 1-219 (230)
109 PRK10584 putative ABC transpor 100.0 3.1E-55 6.8E-60 375.9 26.8 210 1-211 7-226 (228)
110 PRK14242 phosphate transporter 100.0 5.1E-55 1.1E-59 380.3 28.2 217 1-219 7-236 (253)
111 cd03235 ABC_Metallic_Cations A 100.0 7.5E-56 1.6E-60 376.1 22.4 205 2-212 1-212 (213)
112 PRK14273 phosphate ABC transpo 100.0 4.6E-55 1E-59 380.9 27.8 217 1-219 8-237 (254)
113 PRK11300 livG leucine/isoleuci 100.0 3.5E-55 7.6E-60 381.6 26.9 217 1-218 6-241 (255)
114 PRK11614 livF leucine/isoleuci 100.0 2.4E-55 5.3E-60 378.9 25.5 216 1-219 6-225 (237)
115 COG3840 ThiQ ABC-type thiamine 100.0 4.3E-56 9.4E-61 361.0 19.4 215 1-219 2-218 (231)
116 PRK11022 dppD dipeptide transp 100.0 4.9E-55 1.1E-59 393.9 28.4 220 1-220 4-243 (326)
117 PRK11231 fecE iron-dicitrate t 100.0 3.4E-55 7.5E-60 382.1 26.2 217 1-218 3-225 (255)
118 TIGR03873 F420-0_ABC_ATP propo 100.0 5.2E-55 1.1E-59 381.1 26.9 217 1-218 2-224 (256)
119 TIGR02769 nickel_nikE nickel i 100.0 7.2E-55 1.6E-59 382.2 27.6 220 1-220 3-240 (265)
120 PRK13632 cbiO cobalt transport 100.0 6E-55 1.3E-59 384.0 26.6 217 1-218 8-229 (271)
121 PRK10575 iron-hydroxamate tran 100.0 4.7E-55 1E-59 383.4 25.9 217 1-218 12-235 (265)
122 PRK10744 pstB phosphate transp 100.0 1.1E-54 2.4E-59 380.0 28.0 217 1-219 14-243 (260)
123 TIGR01978 sufC FeS assembly AT 100.0 1E-54 2.3E-59 375.7 27.5 218 1-219 1-233 (243)
124 PRK14241 phosphate transporter 100.0 1.2E-54 2.7E-59 379.1 28.3 218 1-219 5-241 (258)
125 PRK14269 phosphate ABC transpo 100.0 1.4E-54 3.1E-59 376.3 28.2 217 1-219 3-229 (246)
126 PRK11247 ssuB aliphatic sulfon 100.0 6.2E-55 1.3E-59 381.3 25.8 205 1-216 13-219 (257)
127 PRK13645 cbiO cobalt transport 100.0 1.1E-54 2.4E-59 385.6 27.7 217 1-218 7-238 (289)
128 PRK14250 phosphate ABC transpo 100.0 6.9E-55 1.5E-59 377.3 25.8 213 1-219 4-220 (241)
129 TIGR01277 thiQ thiamine ABC tr 100.0 1E-54 2.2E-59 369.5 26.1 210 1-214 1-212 (213)
130 cd03300 ABC_PotA_N PotA is an 100.0 2.2E-54 4.7E-59 372.1 28.0 217 1-219 1-219 (232)
131 PRK14235 phosphate transporter 100.0 2.1E-54 4.5E-59 379.8 28.5 217 1-219 20-250 (267)
132 PRK13640 cbiO cobalt transport 100.0 1.3E-54 2.8E-59 384.0 27.1 217 1-218 6-230 (282)
133 PRK14256 phosphate ABC transpo 100.0 2.5E-54 5.3E-59 375.9 28.4 218 1-219 5-235 (252)
134 PRK10253 iron-enterobactin tra 100.0 1.1E-54 2.4E-59 381.1 26.2 217 1-218 8-231 (265)
135 PRK10771 thiQ thiamine transpo 100.0 1.4E-54 3E-59 373.2 26.2 215 1-219 2-218 (232)
136 PRK13633 cobalt transporter AT 100.0 1.4E-54 3E-59 383.4 27.0 219 1-220 5-233 (280)
137 PRK13648 cbiO cobalt transport 100.0 1.8E-54 4E-59 380.4 27.5 218 1-219 8-230 (269)
138 PRK09984 phosphonate/organopho 100.0 6.2E-55 1.3E-59 381.9 24.1 217 1-218 5-240 (262)
139 PRK09473 oppD oligopeptide tra 100.0 2.1E-54 4.5E-59 390.3 28.3 220 1-220 13-251 (330)
140 PRK15112 antimicrobial peptide 100.0 1.4E-54 3.1E-59 380.8 26.4 220 1-220 5-239 (267)
141 TIGR02142 modC_ABC molybdenum 100.0 2.1E-54 4.6E-59 393.8 27.9 210 5-219 4-220 (354)
142 PRK14240 phosphate transporter 100.0 5E-54 1.1E-58 373.4 28.7 217 1-219 4-233 (250)
143 TIGR00968 3a0106s01 sulfate AB 100.0 4.1E-54 8.9E-59 371.6 27.8 217 1-219 1-219 (237)
144 cd03299 ABC_ModC_like Archeal 100.0 5.2E-54 1.1E-58 370.5 28.3 216 1-219 1-218 (235)
145 cd03267 ABC_NatA_like Similar 100.0 1.7E-54 3.7E-59 373.8 25.3 200 14-213 34-236 (236)
146 PRK14274 phosphate ABC transpo 100.0 4.6E-54 1E-58 375.8 28.2 217 1-219 13-242 (259)
147 PRK14270 phosphate ABC transpo 100.0 4.6E-54 9.9E-59 374.0 27.9 217 1-219 5-234 (251)
148 TIGR03740 galliderm_ABC gallid 100.0 3.2E-54 6.9E-59 368.7 26.3 208 1-216 1-209 (223)
149 PRK14245 phosphate ABC transpo 100.0 5.8E-54 1.3E-58 373.2 28.3 218 1-220 4-234 (250)
150 PRK11144 modC molybdate transp 100.0 2.3E-54 5E-59 393.3 26.8 209 1-219 2-217 (352)
151 PRK14239 phosphate transporter 100.0 5.9E-54 1.3E-58 373.3 27.9 217 1-219 6-235 (252)
152 PRK13642 cbiO cobalt transport 100.0 4.5E-54 9.7E-59 379.6 27.5 218 1-219 5-228 (277)
153 PRK15093 antimicrobial peptide 100.0 4.1E-54 8.8E-59 388.6 27.7 219 1-219 4-247 (330)
154 PRK14259 phosphate ABC transpo 100.0 4.7E-54 1E-58 378.0 27.2 216 1-219 14-252 (269)
155 cd03297 ABC_ModC_molybdenum_tr 100.0 3.7E-54 8.1E-59 366.1 25.6 205 3-213 3-214 (214)
156 COG0444 DppD ABC-type dipeptid 100.0 3.6E-54 7.7E-59 378.2 25.5 221 1-221 2-244 (316)
157 PRK14248 phosphate ABC transpo 100.0 9.3E-54 2E-58 375.7 28.0 217 1-219 22-251 (268)
158 PRK14251 phosphate ABC transpo 100.0 9.6E-54 2.1E-58 371.9 27.7 217 1-219 5-234 (251)
159 PRK14272 phosphate ABC transpo 100.0 1.3E-53 2.8E-58 371.1 28.4 218 1-219 5-235 (252)
160 PRK14262 phosphate ABC transpo 100.0 1.4E-53 3.1E-58 370.6 28.3 218 1-220 4-234 (250)
161 TIGR01257 rim_protein retinal- 100.0 6.2E-54 1.4E-58 449.0 31.1 233 1-233 929-1162(2272)
162 TIGR01257 rim_protein retinal- 100.0 5.6E-54 1.2E-58 449.4 30.2 231 1-231 1938-2170(2272)
163 PRK10762 D-ribose transporter 100.0 2.8E-54 6.1E-59 409.3 25.3 216 1-217 5-227 (501)
164 PRK11701 phnK phosphonate C-P 100.0 1.5E-53 3.3E-58 372.3 27.4 218 1-219 7-240 (258)
165 PRK14249 phosphate ABC transpo 100.0 2.4E-53 5.3E-58 369.5 28.5 218 1-220 5-235 (251)
166 cd03252 ABCC_Hemolysin The ABC 100.0 4.4E-54 9.5E-59 370.9 23.5 216 1-220 1-225 (237)
167 PRK14244 phosphate ABC transpo 100.0 2E-53 4.3E-58 370.0 27.8 216 2-219 7-236 (251)
168 PRK14253 phosphate ABC transpo 100.0 2E-53 4.4E-58 369.4 27.7 217 1-219 4-232 (249)
169 PRK14237 phosphate transporter 100.0 2.8E-53 6E-58 372.7 28.5 217 1-219 21-250 (267)
170 PRK13549 xylose transporter AT 100.0 5.8E-54 1.3E-58 407.6 25.6 216 1-217 6-229 (506)
171 PRK13547 hmuV hemin importer A 100.0 1.8E-53 4E-58 374.9 26.6 217 1-218 2-242 (272)
172 COG4598 HisP ABC-type histidin 100.0 4.1E-55 8.9E-60 355.0 14.8 219 1-220 7-241 (256)
173 TIGR03608 L_ocin_972_ABC putat 100.0 1.1E-53 2.3E-58 360.8 24.0 200 3-204 1-206 (206)
174 cd03251 ABCC_MsbA MsbA is an e 100.0 1.6E-53 3.4E-58 366.6 25.3 217 1-221 1-226 (234)
175 PRK14275 phosphate ABC transpo 100.0 3.4E-53 7.3E-58 375.7 28.1 217 1-219 40-269 (286)
176 cd03234 ABCG_White The White s 100.0 2E-53 4.4E-58 364.6 25.5 211 1-213 4-226 (226)
177 PRK14260 phosphate ABC transpo 100.0 3.9E-53 8.4E-58 370.0 27.8 217 1-219 8-242 (259)
178 PRK09700 D-allose transporter 100.0 9.4E-54 2E-58 406.5 25.9 216 1-217 6-231 (510)
179 PRK14261 phosphate ABC transpo 100.0 4.4E-53 9.6E-58 368.2 27.6 217 1-219 7-236 (253)
180 PRK14271 phosphate ABC transpo 100.0 5.6E-53 1.2E-57 372.5 28.5 218 1-220 22-251 (276)
181 PRK14238 phosphate transporter 100.0 4.1E-53 8.8E-58 372.4 27.4 217 1-219 25-254 (271)
182 TIGR02982 heterocyst_DevA ABC 100.0 3E-53 6.6E-58 362.1 25.4 208 1-209 2-219 (220)
183 PRK14254 phosphate ABC transpo 100.0 5.8E-53 1.3E-57 374.0 28.1 216 1-219 40-268 (285)
184 PRK15439 autoinducer 2 ABC tra 100.0 2.1E-53 4.5E-58 404.2 26.9 213 1-218 12-227 (510)
185 PRK10261 glutathione transport 100.0 3.6E-53 7.7E-58 410.9 28.6 219 1-219 314-552 (623)
186 PRK14236 phosphate transporter 100.0 8.7E-53 1.9E-57 370.4 28.4 217 1-219 26-255 (272)
187 PRK14255 phosphate ABC transpo 100.0 8E-53 1.7E-57 366.3 27.8 217 1-219 6-235 (252)
188 cd03254 ABCC_Glucan_exporter_l 100.0 2.9E-53 6.3E-58 363.8 24.3 216 1-220 3-226 (229)
189 PRK10418 nikD nickel transport 100.0 7.3E-53 1.6E-57 367.3 26.8 215 1-220 5-230 (254)
190 PRK14243 phosphate transporter 100.0 7.5E-53 1.6E-57 369.3 26.8 217 1-220 11-248 (264)
191 PRK14258 phosphate ABC transpo 100.0 1.4E-52 3E-57 367.0 28.3 218 1-220 8-245 (261)
192 cd03245 ABCC_bacteriocin_expor 100.0 2.4E-53 5.2E-58 362.3 22.6 205 1-213 3-220 (220)
193 PRK10419 nikE nickel transport 100.0 1E-52 2.2E-57 369.3 27.2 219 1-219 4-240 (268)
194 COG1123 ATPase components of v 100.0 3.7E-53 8E-58 395.4 25.2 221 1-221 281-520 (539)
195 PRK13538 cytochrome c biogenes 100.0 5.1E-53 1.1E-57 357.0 23.8 200 1-204 2-202 (204)
196 PRK14246 phosphate ABC transpo 100.0 1.9E-52 4.1E-57 365.6 28.1 218 1-219 11-240 (257)
197 TIGR02323 CP_lyasePhnK phospho 100.0 1.5E-52 3.2E-57 364.8 27.0 218 1-219 4-237 (253)
198 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 8E-53 1.7E-57 363.2 24.8 216 1-220 1-226 (238)
199 PRK14265 phosphate ABC transpo 100.0 2.1E-52 4.6E-57 368.4 27.4 216 1-219 21-257 (274)
200 TIGR03269 met_CoM_red_A2 methy 100.0 1E-52 2.2E-57 400.2 27.2 218 1-219 1-257 (520)
201 PRK10247 putative ABC transpor 100.0 8.6E-53 1.9E-57 360.7 23.5 209 1-214 8-221 (225)
202 PRK10982 galactose/methyl gala 100.0 8.5E-53 1.8E-57 398.2 25.7 214 3-217 1-220 (491)
203 PRK14266 phosphate ABC transpo 100.0 3E-52 6.6E-57 362.3 27.1 217 1-219 4-233 (250)
204 PRK14263 phosphate ABC transpo 100.0 4.2E-52 9.2E-57 364.1 28.2 216 1-219 9-244 (261)
205 TIGR02770 nickel_nikD nickel i 100.0 1.5E-52 3.3E-57 360.2 24.8 203 16-219 1-214 (230)
206 PRK11288 araG L-arabinose tran 100.0 1.3E-52 2.9E-57 397.8 26.7 213 1-214 5-223 (501)
207 PRK15056 manganese/iron transp 100.0 1.7E-52 3.7E-57 368.6 25.4 215 1-218 7-228 (272)
208 COG4181 Predicted ABC-type tra 100.0 2.2E-53 4.9E-58 342.2 18.0 211 1-212 7-227 (228)
209 TIGR02633 xylG D-xylose ABC tr 100.0 1.3E-52 2.9E-57 397.6 26.5 215 1-216 2-226 (500)
210 cd03253 ABCC_ATM1_transporter 100.0 2.9E-52 6.3E-57 359.1 25.8 216 1-220 1-224 (236)
211 CHL00131 ycf16 sulfate ABC tra 100.0 5.1E-52 1.1E-56 361.1 27.5 217 1-218 8-239 (252)
212 TIGR01184 ntrCD nitrate transp 100.0 1.5E-52 3.3E-57 360.4 23.9 196 17-216 1-200 (230)
213 cd03231 ABC_CcmA_heme_exporter 100.0 1.4E-52 3E-57 353.6 23.2 197 1-204 1-198 (201)
214 PRK14257 phosphate ABC transpo 100.0 6.2E-52 1.3E-56 374.0 28.7 219 1-220 81-313 (329)
215 TIGR03269 met_CoM_red_A2 methy 100.0 3.5E-52 7.5E-57 396.6 27.7 219 1-220 280-517 (520)
216 PRK14252 phosphate ABC transpo 100.0 7.7E-52 1.7E-56 363.0 27.6 217 1-219 17-248 (265)
217 COG1129 MglA ABC-type sugar tr 100.0 1.4E-52 3E-57 389.1 24.1 213 1-214 9-228 (500)
218 PRK03695 vitamin B12-transport 100.0 2.9E-52 6.4E-57 362.5 24.7 211 1-218 1-220 (248)
219 PRK10261 glutathione transport 100.0 2.6E-52 5.6E-57 404.9 27.1 218 1-218 13-256 (623)
220 TIGR02324 CP_lyasePhnL phospho 100.0 3.2E-52 7E-57 356.4 24.5 204 1-204 2-222 (224)
221 COG4525 TauB ABC-type taurine 100.0 1.1E-52 2.4E-57 344.6 19.9 213 1-218 4-222 (259)
222 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 7.1E-52 1.5E-56 355.0 25.5 199 3-213 25-224 (224)
223 cd03244 ABCC_MRP_domain2 Domai 100.0 2.4E-52 5.2E-57 356.3 22.4 205 1-214 3-220 (221)
224 COG1123 ATPase components of v 100.0 4.7E-52 1E-56 388.0 26.3 227 1-227 6-251 (539)
225 PRK15134 microcin C ABC transp 100.0 4E-52 8.6E-57 396.9 26.2 218 1-219 276-514 (529)
226 PRK13543 cytochrome c biogenes 100.0 4.9E-52 1.1E-56 353.5 24.0 200 1-206 12-212 (214)
227 PRK13549 xylose transporter AT 100.0 2.9E-52 6.2E-57 396.0 24.0 218 1-218 260-492 (506)
228 PRK15134 microcin C ABC transp 100.0 1.1E-51 2.3E-56 394.0 27.3 218 1-218 6-244 (529)
229 cd03248 ABCC_TAP TAP, the Tran 100.0 2.6E-52 5.6E-57 357.4 20.1 207 1-209 12-226 (226)
230 PRK14264 phosphate ABC transpo 100.0 3.5E-51 7.6E-56 365.8 28.2 217 1-219 46-288 (305)
231 COG4161 ArtP ABC-type arginine 100.0 1.7E-52 3.8E-57 334.7 17.3 217 1-218 3-228 (242)
232 cd03230 ABC_DR_subfamily_A Thi 100.0 1.3E-51 2.8E-56 340.1 23.0 172 1-209 1-173 (173)
233 cd03289 ABCC_CFTR2 The CFTR su 100.0 1E-51 2.2E-56 364.1 23.8 210 1-220 3-225 (275)
234 PRK09580 sufC cysteine desulfu 100.0 4.1E-51 8.9E-56 354.4 26.9 217 1-218 2-233 (248)
235 TIGR01189 ccmA heme ABC export 100.0 1.7E-51 3.7E-56 346.0 23.2 196 1-203 1-197 (198)
236 PRK10938 putative molybdenum t 100.0 9.2E-52 2E-56 391.0 23.6 209 1-218 4-222 (490)
237 PRK09700 D-allose transporter 100.0 1E-51 2.2E-56 392.5 23.8 212 1-215 266-493 (510)
238 COG4559 ABC-type hemin transpo 100.0 7.9E-52 1.7E-56 343.3 19.9 217 1-218 2-228 (259)
239 cd03369 ABCC_NFT1 Domain 2 of 100.0 3E-51 6.6E-56 346.6 23.9 198 1-214 7-206 (207)
240 cd03229 ABC_Class3 This class 100.0 2.6E-51 5.6E-56 339.7 22.4 173 1-208 1-178 (178)
241 cd03233 ABC_PDR_domain1 The pl 100.0 3.6E-51 7.9E-56 345.4 23.7 190 1-213 4-202 (202)
242 cd03247 ABCC_cytochrome_bd The 100.0 2.5E-51 5.5E-56 339.6 22.3 177 1-213 1-178 (178)
243 cd03213 ABCG_EPDR ABCG transpo 100.0 3.3E-51 7.1E-56 343.6 23.2 182 1-213 4-194 (194)
244 COG3845 ABC-type uncharacteriz 100.0 1.6E-51 3.4E-56 376.4 22.4 213 1-214 5-223 (501)
245 TIGR02633 xylG D-xylose ABC tr 100.0 1.8E-51 4E-56 389.9 23.6 215 1-215 258-487 (500)
246 PRK09544 znuC high-affinity zi 100.0 4.5E-51 9.9E-56 355.8 23.8 199 1-218 5-207 (251)
247 PRK13539 cytochrome c biogenes 100.0 5E-51 1.1E-55 345.6 23.0 197 1-206 3-200 (207)
248 COG4604 CeuD ABC-type enteroch 100.0 1E-52 2.2E-57 345.2 12.2 217 1-218 2-223 (252)
249 PRK13540 cytochrome c biogenes 100.0 4.2E-51 9.1E-56 344.2 22.3 195 1-202 2-197 (200)
250 cd03288 ABCC_SUR2 The SUR doma 100.0 4.7E-51 1E-55 356.6 23.2 215 1-220 20-243 (257)
251 PRK11174 cysteine/glutathione 100.0 4.4E-51 9.6E-56 393.9 24.7 215 1-220 350-572 (588)
252 cd03232 ABC_PDR_domain2 The pl 100.0 8.8E-51 1.9E-55 340.5 23.1 181 1-213 4-192 (192)
253 TIGR01166 cbiO cobalt transpor 100.0 3.8E-51 8.2E-56 341.6 20.7 180 13-193 4-189 (190)
254 cd03246 ABCC_Protease_Secretio 100.0 1E-50 2.3E-55 334.6 21.9 170 1-209 1-173 (173)
255 cd03215 ABC_Carb_Monos_II This 100.0 1.3E-50 2.7E-55 336.7 21.8 172 1-209 5-182 (182)
256 PRK13546 teichoic acids export 100.0 6.7E-50 1.5E-54 350.8 27.6 209 1-221 5-233 (264)
257 cd03214 ABC_Iron-Siderophores_ 100.0 7E-51 1.5E-55 337.7 20.2 176 2-212 1-179 (180)
258 COG2274 SunT ABC-type bacterio 100.0 4.7E-51 1E-55 396.9 21.8 213 1-221 472-697 (709)
259 cd03217 ABC_FeS_Assembly ABC-t 100.0 3.5E-50 7.6E-55 338.8 24.3 184 1-216 1-190 (200)
260 COG4988 CydD ABC-type transpor 100.0 7.3E-51 1.6E-55 379.1 21.3 211 3-221 323-544 (559)
261 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.1E-50 4.6E-55 395.6 25.2 209 1-220 452-673 (686)
262 PRK11176 lipid transporter ATP 100.0 1.3E-50 2.8E-55 390.2 23.0 214 1-221 342-568 (582)
263 cd03228 ABCC_MRP_Like The MRP 100.0 3.1E-50 6.7E-55 331.2 21.7 169 1-208 1-171 (171)
264 PRK10762 D-ribose transporter 100.0 2.3E-50 5E-55 382.5 23.5 211 2-218 259-482 (501)
265 PRK13545 tagH teichoic acids e 100.0 1.2E-49 2.5E-54 373.1 27.9 208 1-220 22-232 (549)
266 PRK10790 putative multidrug tr 100.0 6.4E-50 1.4E-54 386.2 26.9 212 1-221 341-564 (592)
267 PRK11288 araG L-arabinose tran 100.0 2E-50 4.3E-55 383.0 22.6 211 2-217 259-482 (501)
268 PRK11160 cysteine/glutathione 100.0 3.4E-50 7.4E-55 387.0 24.0 213 1-221 339-563 (574)
269 COG1132 MdlB ABC-type multidru 100.0 7.2E-50 1.6E-54 384.2 24.9 217 1-221 329-553 (567)
270 cd03250 ABCC_MRP_domain1 Domai 100.0 9.7E-50 2.1E-54 336.7 21.7 191 1-208 1-204 (204)
271 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.3E-49 2.8E-54 391.4 25.7 210 1-220 478-700 (710)
272 TIGR03375 type_I_sec_LssB type 100.0 6.5E-50 1.4E-54 392.6 23.3 213 1-221 464-689 (694)
273 PLN03211 ABC transporter G-25; 100.0 1.6E-49 3.4E-54 386.5 25.4 215 3-221 71-297 (659)
274 cd03290 ABCC_SUR1_N The SUR do 100.0 1.8E-49 3.9E-54 338.2 22.6 199 1-208 1-218 (218)
275 TIGR01187 potA spermidine/putr 100.0 1.8E-49 4E-54 357.6 23.8 187 32-219 1-189 (325)
276 PRK15064 ABC transporter ATP-b 100.0 3.1E-49 6.8E-54 377.1 26.2 204 1-217 2-239 (530)
277 PRK13657 cyclic beta-1,2-gluca 100.0 3.8E-49 8.1E-54 380.7 26.9 212 1-220 335-558 (588)
278 TIGR03771 anch_rpt_ABC anchore 100.0 2.2E-49 4.7E-54 339.3 22.4 192 22-218 1-199 (223)
279 PRK15439 autoinducer 2 ABC tra 100.0 1.2E-49 2.6E-54 378.4 22.9 210 2-217 270-489 (510)
280 TIGR01193 bacteriocin_ABC ABC- 100.0 1.4E-49 3E-54 391.1 23.9 213 1-221 474-698 (708)
281 PRK11819 putative ABC transpor 100.0 4.6E-49 1E-53 377.8 25.8 204 1-217 7-247 (556)
282 TIGR00958 3a01208 Conjugate Tr 100.0 1.9E-49 4.2E-54 390.0 23.4 211 1-221 479-703 (711)
283 TIGR01842 type_I_sec_PrtD type 100.0 8E-49 1.7E-53 375.3 26.9 215 1-219 317-541 (544)
284 TIGR01192 chvA glucan exporter 100.0 8.5E-49 1.8E-53 378.0 27.0 217 1-221 335-559 (585)
285 PRK10982 galactose/methyl gala 100.0 2.8E-49 6.1E-54 374.2 23.2 212 1-215 251-475 (491)
286 cd03216 ABC_Carb_Monos_I This 100.0 9.6E-49 2.1E-53 320.2 22.8 159 1-211 1-162 (163)
287 COG4586 ABC-type uncharacteriz 100.0 1.1E-49 2.4E-54 341.2 17.8 211 15-225 38-251 (325)
288 KOG0058|consensus 100.0 2.5E-49 5.4E-54 375.4 21.6 217 1-221 466-692 (716)
289 TIGR02203 MsbA_lipidA lipid A 100.0 3E-49 6.6E-54 379.7 22.5 213 1-220 331-556 (571)
290 COG4674 Uncharacterized ABC-ty 100.0 1.4E-49 3E-54 326.2 16.7 220 1-221 6-236 (249)
291 PRK15064 ABC transporter ATP-b 100.0 1.1E-48 2.3E-53 373.4 25.0 201 1-219 320-524 (530)
292 PRK10938 putative molybdenum t 100.0 4.4E-49 9.6E-54 372.7 22.1 212 1-213 261-485 (490)
293 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.8E-48 3.8E-53 373.6 26.2 204 1-217 5-245 (552)
294 cd03223 ABCD_peroxisomal_ALDP 100.0 1.3E-48 2.8E-53 320.3 21.7 164 1-208 1-164 (166)
295 COG4148 ModC ABC-type molybdat 100.0 8.8E-50 1.9E-54 342.7 14.8 206 5-219 5-217 (352)
296 PRK13541 cytochrome c biogenes 100.0 1.2E-48 2.6E-53 328.0 21.3 190 1-201 2-192 (195)
297 COG4619 ABC-type uncharacteriz 100.0 3.9E-50 8.4E-55 322.6 11.5 203 3-209 6-212 (223)
298 PRK10535 macrolide transporter 100.0 4.1E-48 9E-53 376.9 28.2 217 1-218 5-230 (648)
299 TIGR01846 type_I_sec_HlyB type 100.0 8.9E-49 1.9E-53 384.6 23.4 217 1-221 456-681 (694)
300 TIGR02204 MsbA_rel ABC transpo 100.0 3.1E-48 6.8E-53 373.1 25.4 212 1-220 338-563 (576)
301 PRK10789 putative multidrug tr 100.0 3.7E-48 8.1E-53 372.5 25.9 212 1-220 314-538 (569)
302 KOG0057|consensus 100.0 7.4E-49 1.6E-53 361.9 19.9 211 1-220 352-574 (591)
303 KOG0055|consensus 100.0 5.3E-49 1.2E-53 390.9 20.0 217 1-221 351-577 (1228)
304 KOG0059|consensus 100.0 1E-48 2.2E-53 391.6 21.4 233 2-234 566-801 (885)
305 cd03237 ABC_RNaseL_inhibitor_d 100.0 5.5E-48 1.2E-52 335.4 22.4 195 9-218 2-205 (246)
306 PRK15177 Vi polysaccharide exp 100.0 6.7E-48 1.5E-52 328.1 22.1 192 15-221 1-193 (213)
307 COG4608 AppF ABC-type oligopep 100.0 2.2E-48 4.7E-53 335.1 19.0 184 1-220 5-199 (268)
308 COG4987 CydC ABC-type transpor 100.0 4.8E-49 1E-53 362.9 15.7 212 1-220 337-561 (573)
309 COG4172 ABC-type uncharacteriz 100.0 6.8E-48 1.5E-52 344.8 22.1 220 1-221 277-517 (534)
310 PRK11819 putative ABC transpor 100.0 1.5E-47 3.2E-52 367.4 25.6 203 1-218 325-531 (556)
311 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2E-47 4.2E-52 366.3 25.6 203 1-218 323-529 (552)
312 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.4E-47 9.6E-52 335.7 24.8 195 1-219 40-246 (282)
313 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.1E-47 2.3E-52 335.2 19.9 201 4-212 4-219 (255)
314 TIGR02857 CydD thiol reductant 100.0 2E-47 4.4E-52 364.3 22.2 196 1-204 321-529 (529)
315 TIGR00955 3a01204 The Eye Pigm 100.0 6E-47 1.3E-51 367.1 24.8 207 13-221 37-257 (617)
316 PLN03232 ABC transporter C fam 100.0 2.7E-47 5.8E-52 398.1 23.5 212 1-221 1235-1459(1495)
317 TIGR02868 CydC thiol reductant 100.0 1.4E-47 3.1E-52 365.4 19.2 184 1-191 335-529 (529)
318 PLN03130 ABC transporter C fam 100.0 4.4E-47 9.5E-52 397.5 24.4 211 1-220 1238-1461(1622)
319 PRK10522 multidrug transporter 100.0 7.6E-47 1.6E-51 361.9 24.0 201 1-213 323-531 (547)
320 PRK13409 putative ATPase RIL; 100.0 8.9E-47 1.9E-51 363.2 23.7 194 1-214 341-536 (590)
321 PRK10636 putative ABC transpor 100.0 1.6E-46 3.4E-51 365.1 24.3 199 1-218 313-515 (638)
322 PTZ00265 multidrug resistance 100.0 5.5E-47 1.2E-51 393.7 21.2 212 1-220 1166-1452(1466)
323 PRK11147 ABC transporter ATPas 100.0 2E-46 4.3E-51 364.5 23.8 202 1-217 320-525 (635)
324 COG4172 ABC-type uncharacteriz 100.0 2.3E-46 4.9E-51 335.1 22.1 221 1-221 7-248 (534)
325 COG1119 ModF ABC-type molybden 100.0 4.7E-47 1E-51 321.4 16.6 213 1-214 32-256 (257)
326 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.7E-46 5.8E-51 358.7 23.6 201 1-212 338-551 (555)
327 TIGR00956 3a01205 Pleiotropic 100.0 3.9E-46 8.4E-51 386.6 26.5 212 1-215 760-988 (1394)
328 PTZ00243 ABC transporter; Prov 100.0 2.5E-46 5.4E-51 391.1 24.8 211 1-220 1309-1533(1560)
329 PRK10636 putative ABC transpor 100.0 1.1E-45 2.4E-50 359.2 25.8 202 1-216 2-232 (638)
330 TIGR00957 MRP_assoc_pro multi 100.0 9.4E-46 2E-50 387.0 26.5 212 1-221 1285-1509(1522)
331 PTZ00265 multidrug resistance 100.0 3.4E-46 7.4E-51 387.8 22.7 205 1-207 383-655 (1466)
332 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.4E-45 3E-50 295.8 20.7 144 1-208 1-144 (144)
333 KOG0055|consensus 100.0 4.8E-46 1E-50 369.9 21.5 219 1-229 988-1220(1228)
334 PLN03073 ABC transporter F fam 100.0 4.1E-45 8.9E-50 357.9 26.8 200 1-218 509-712 (718)
335 COG1101 PhnK ABC-type uncharac 100.0 1E-45 2.2E-50 307.5 18.4 214 1-214 2-232 (263)
336 COG0396 sufC Cysteine desulfur 100.0 1.1E-44 2.4E-49 304.1 24.5 218 1-218 4-232 (251)
337 PLN03140 ABC transporter G fam 100.0 9.3E-45 2E-49 376.2 26.8 213 1-215 868-1105(1470)
338 PRK11147 ABC transporter ATPas 100.0 1.3E-44 2.8E-49 351.8 26.0 201 1-216 4-239 (635)
339 TIGR01271 CFTR_protein cystic 100.0 5.9E-45 1.3E-49 380.1 25.0 210 1-220 1218-1440(1490)
340 COG1134 TagH ABC-type polysacc 100.0 1.5E-44 3.3E-49 306.3 21.5 197 15-223 41-239 (249)
341 TIGR00954 3a01203 Peroxysomal 100.0 8.4E-45 1.8E-49 354.2 21.2 191 1-205 452-652 (659)
342 PRK13409 putative ATPase RIL; 100.0 5.3E-45 1.2E-49 350.9 18.7 193 5-207 78-287 (590)
343 TIGR00956 3a01205 Pleiotropic 100.0 2.1E-44 4.5E-49 373.8 24.3 208 14-221 74-301 (1394)
344 COG4167 SapF ABC-type antimicr 100.0 1.3E-44 2.8E-49 294.6 17.7 218 1-218 5-237 (267)
345 cd03222 ABC_RNaseL_inhibitor T 100.0 2.6E-44 5.6E-49 297.6 18.9 152 4-216 4-159 (177)
346 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.6E-43 5.5E-48 285.9 20.9 155 2-208 1-157 (157)
347 PLN03140 ABC transporter G fam 100.0 1.6E-43 3.4E-48 367.0 21.0 211 7-221 173-428 (1470)
348 cd03238 ABC_UvrA The excision 100.0 9E-43 1.9E-47 288.2 19.5 157 13-210 7-167 (176)
349 KOG0061|consensus 100.0 1.2E-42 2.6E-47 335.6 23.5 219 2-222 27-262 (613)
350 COG4133 CcmA ABC-type transpor 100.0 2.4E-43 5.1E-48 287.9 15.4 191 1-195 3-194 (209)
351 COG0488 Uup ATPase components 100.0 8.1E-43 1.7E-47 329.9 21.1 201 1-215 4-235 (530)
352 COG4618 ArpD ABC-type protease 100.0 1.9E-42 4.2E-47 317.0 21.5 218 1-222 335-562 (580)
353 COG4136 ABC-type uncharacteriz 100.0 3.5E-43 7.6E-48 278.0 13.7 200 1-204 3-207 (213)
354 PLN03073 ABC transporter F fam 100.0 7.3E-43 1.6E-47 342.0 18.4 212 1-216 178-427 (718)
355 TIGR00957 MRP_assoc_pro multi 100.0 5.8E-42 1.3E-46 358.5 24.1 202 1-219 637-849 (1522)
356 KOG0056|consensus 100.0 7.7E-43 1.7E-47 318.2 13.8 217 1-221 538-762 (790)
357 PLN03232 ABC transporter C fam 100.0 5.9E-42 1.3E-46 358.0 22.4 199 1-219 615-827 (1495)
358 TIGR01271 CFTR_protein cystic 100.0 2.1E-41 4.6E-46 353.5 25.2 192 14-219 439-635 (1490)
359 PLN03130 ABC transporter C fam 100.0 2.4E-41 5.3E-46 354.4 23.9 198 1-219 615-827 (1622)
360 COG4107 PhnK ABC-type phosphon 100.0 2.6E-41 5.7E-46 273.3 17.6 212 1-217 7-238 (258)
361 cd03270 ABC_UvrA_I The excisio 100.0 5.1E-40 1.1E-44 282.1 20.7 193 12-213 6-226 (226)
362 COG4778 PhnL ABC-type phosphon 100.0 1E-40 2.2E-45 268.8 14.0 206 1-206 5-227 (235)
363 PTZ00243 ABC transporter; Prov 100.0 7.2E-40 1.6E-44 342.7 23.0 189 13-218 672-868 (1560)
364 COG5265 ATM1 ABC-type transpor 100.0 7.6E-41 1.7E-45 300.8 13.3 222 1-228 263-492 (497)
365 COG0488 Uup ATPase components 100.0 1.5E-38 3.3E-43 300.8 22.0 198 1-217 322-522 (530)
366 KOG0054|consensus 100.0 4E-39 8.7E-44 326.3 19.0 212 1-221 1139-1363(1381)
367 PF00005 ABC_tran: ABC transpo 100.0 1.1E-38 2.4E-43 252.1 13.2 132 17-161 1-137 (137)
368 cd03271 ABC_UvrA_II The excisi 100.0 1.1E-37 2.3E-42 272.4 17.6 194 15-215 9-261 (261)
369 cd03278 ABC_SMC_barmotin Barmo 100.0 6.6E-38 1.4E-42 263.7 13.4 166 16-206 11-190 (197)
370 COG1129 MglA ABC-type sugar tr 100.0 4.6E-36 1E-40 278.9 21.8 199 16-214 274-484 (500)
371 KOG0054|consensus 100.0 3.1E-36 6.7E-41 305.4 21.4 199 1-220 519-731 (1381)
372 cd03272 ABC_SMC3_euk Eukaryoti 100.0 1E-36 2.2E-41 263.5 12.8 194 3-205 6-234 (243)
373 COG4138 BtuD ABC-type cobalami 100.0 3.5E-37 7.7E-42 249.4 7.5 206 2-218 5-219 (248)
374 cd03274 ABC_SMC4_euk Eukaryoti 100.0 2.1E-37 4.5E-42 263.5 3.6 184 2-206 7-204 (212)
375 cd03273 ABC_SMC2_euk Eukaryoti 100.0 3.6E-36 7.8E-41 261.8 10.4 181 23-205 22-242 (251)
376 cd03279 ABC_sbcCD SbcCD and ot 100.0 6E-35 1.3E-39 248.4 14.7 192 1-209 6-211 (213)
377 COG3845 ABC-type uncharacteriz 100.0 8.8E-33 1.9E-37 253.3 20.6 217 1-217 258-489 (501)
378 PRK00635 excinuclease ABC subu 100.0 2.4E-32 5.2E-37 283.2 23.5 204 15-220 609-906 (1809)
379 cd03240 ABC_Rad50 The catalyti 100.0 2.2E-33 4.8E-38 237.4 12.9 165 19-206 15-197 (204)
380 COG4615 PvdE ABC-type sideroph 100.0 6.5E-34 1.4E-38 254.5 10.0 200 1-213 323-530 (546)
381 KOG0927|consensus 100.0 2.1E-33 4.5E-38 259.1 11.3 201 1-218 390-594 (614)
382 KOG0065|consensus 100.0 2.8E-33 6.2E-38 279.2 12.0 202 13-216 803-1017(1391)
383 PRK00349 uvrA excinuclease ABC 100.0 1.2E-31 2.6E-36 267.6 22.2 125 89-220 792-927 (943)
384 KOG0927|consensus 100.0 8.2E-32 1.8E-36 248.6 14.9 214 1-216 76-305 (614)
385 COG4170 SapD ABC-type antimicr 100.0 5.2E-32 1.1E-36 225.3 12.3 221 1-221 4-249 (330)
386 COG1245 Predicted ATPase, RNas 100.0 5.7E-31 1.2E-35 239.1 15.6 182 5-205 347-530 (591)
387 TIGR00630 uvra excinuclease AB 100.0 8.4E-30 1.8E-34 254.0 23.2 124 88-218 789-923 (924)
388 COG4178 ABC-type uncharacteriz 100.0 2E-30 4.3E-35 245.6 17.7 188 1-204 393-586 (604)
389 cd03276 ABC_SMC6_euk Eukaryoti 100.0 1E-30 2.3E-35 220.2 13.6 171 16-208 11-192 (198)
390 cd03275 ABC_SMC1_euk Eukaryoti 100.0 1.5E-30 3.2E-35 226.2 10.7 193 2-206 5-233 (247)
391 KOG0062|consensus 100.0 1.2E-30 2.5E-35 239.8 10.0 197 1-216 81-281 (582)
392 KOG0062|consensus 100.0 2E-29 4.3E-34 231.7 15.0 199 1-215 363-564 (582)
393 KOG0066|consensus 100.0 5.9E-29 1.3E-33 225.3 13.2 195 3-216 589-787 (807)
394 KOG2355|consensus 99.9 4.4E-27 9.6E-32 195.1 15.6 202 1-212 14-229 (291)
395 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.8E-27 3.9E-32 200.5 10.8 145 17-213 17-172 (200)
396 COG1245 Predicted ATPase, RNas 99.9 5.9E-27 1.3E-31 213.0 10.6 190 5-206 79-288 (591)
397 KOG0060|consensus 99.9 8E-26 1.7E-30 210.4 16.6 195 1-206 434-641 (659)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.9 8.7E-26 1.9E-30 192.3 14.5 179 16-208 13-211 (213)
399 KOG0065|consensus 99.9 6.7E-26 1.5E-30 226.8 13.5 207 14-222 128-353 (1391)
400 cd03283 ABC_MutS-like MutS-lik 99.9 2.5E-25 5.5E-30 187.5 9.4 146 14-204 14-163 (199)
401 cd03285 ABC_MSH2_euk MutS2 hom 99.9 3.5E-25 7.6E-30 189.7 10.3 153 13-214 16-175 (222)
402 cd03241 ABC_RecN RecN ATPase i 99.9 2.8E-24 6E-29 189.7 15.5 76 132-208 170-249 (276)
403 cd03239 ABC_SMC_head The struc 99.9 5.3E-24 1.2E-28 176.5 14.3 73 133-206 95-172 (178)
404 cd03227 ABC_Class2 ABC-type Cl 99.9 4.3E-24 9.3E-29 174.3 11.9 138 18-206 12-155 (162)
405 KOG0066|consensus 99.9 1.3E-24 2.7E-29 197.3 4.7 212 1-215 265-494 (807)
406 COG2401 ABC-type ATPase fused 99.9 4.5E-23 9.7E-28 186.1 13.5 178 15-210 397-588 (593)
407 KOG0064|consensus 99.9 4.3E-24 9.2E-29 197.1 7.0 186 1-204 482-681 (728)
408 cd03282 ABC_MSH4_euk MutS4 hom 99.9 5.4E-23 1.2E-27 174.0 10.5 143 13-199 15-159 (204)
409 PRK00349 uvrA excinuclease ABC 99.9 1.9E-22 4.1E-27 201.9 15.9 129 87-218 435-583 (943)
410 PRK00635 excinuclease ABC subu 99.9 4.5E-22 9.8E-27 207.3 18.7 197 16-220 1505-1796(1809)
411 cd03243 ABC_MutS_homologs The 99.9 2.3E-23 5E-28 175.7 6.4 152 18-215 20-174 (202)
412 TIGR00630 uvra excinuclease AB 99.9 6.4E-22 1.4E-26 197.8 16.5 129 88-218 434-581 (924)
413 COG0178 UvrA Excinuclease ATPa 99.9 2.7E-21 5.8E-26 186.1 18.7 126 88-220 783-919 (935)
414 cd03242 ABC_RecF RecF is a rec 99.9 2.9E-21 6.2E-26 170.0 17.0 78 129-209 180-269 (270)
415 KOG0063|consensus 99.9 2.6E-21 5.7E-26 175.1 13.2 183 8-206 343-532 (592)
416 TIGR02858 spore_III_AA stage I 99.8 1.3E-20 2.8E-25 165.5 11.8 139 28-216 112-265 (270)
417 cd03284 ABC_MutS1 MutS1 homolo 99.8 1E-20 2.2E-25 161.4 7.8 153 14-216 18-177 (216)
418 smart00534 MUTSac ATPase domai 99.8 2.6E-19 5.7E-24 149.1 5.8 90 119-210 48-140 (185)
419 PRK00064 recF recombination pr 99.8 5.4E-17 1.2E-21 148.5 21.2 79 129-209 270-359 (361)
420 cd03281 ABC_MSH5_euk MutS5 hom 99.7 1.5E-17 3.2E-22 141.7 12.6 131 21-198 21-161 (213)
421 TIGR01069 mutS2 MutS2 family p 99.7 3.5E-18 7.5E-23 169.1 9.7 132 20-195 314-449 (771)
422 PF02463 SMC_N: RecF/RecN/SMC 99.7 2.9E-18 6.3E-23 146.0 6.0 177 18-204 16-211 (220)
423 KOG0063|consensus 99.7 7.9E-17 1.7E-21 146.3 8.8 173 25-206 98-288 (592)
424 cd00820 PEPCK_HprK Phosphoenol 99.7 6.3E-17 1.4E-21 122.7 6.0 77 14-99 2-79 (107)
425 PTZ00132 GTP-binding nuclear p 99.7 8.6E-17 1.9E-21 136.5 7.5 146 29-179 11-204 (215)
426 PRK07721 fliI flagellum-specif 99.7 6.4E-16 1.4E-20 144.0 12.7 174 14-216 146-339 (438)
427 PRK00409 recombination and DNA 99.6 8.3E-16 1.8E-20 152.6 10.9 147 20-211 319-469 (782)
428 TIGR00618 sbcc exonuclease Sbc 99.6 1.1E-15 2.5E-20 156.5 11.0 87 121-207 939-1036(1042)
429 cd03287 ABC_MSH3_euk MutS3 hom 99.6 2E-15 4.4E-20 129.2 10.1 138 14-196 18-159 (222)
430 TIGR00634 recN DNA repair prot 99.6 1.5E-15 3.2E-20 146.4 10.3 77 131-208 439-519 (563)
431 PHA02562 46 endonuclease subun 99.6 2.1E-15 4.4E-20 145.1 9.2 80 128-209 464-555 (562)
432 PRK08533 flagellar accessory p 99.6 2.9E-15 6.2E-20 129.0 6.2 147 23-205 20-184 (230)
433 PRK10869 recombination and rep 99.6 1.1E-14 2.4E-19 139.8 10.7 76 132-208 430-509 (553)
434 cd01128 rho_factor Transcripti 99.6 7.2E-15 1.6E-19 127.8 7.7 177 21-210 10-212 (249)
435 PRK13695 putative NTPase; Prov 99.6 2.3E-15 5E-20 123.9 3.9 82 127-212 73-156 (174)
436 cd03286 ABC_MSH6_euk MutS6 hom 99.5 1.4E-13 3.1E-18 117.5 14.7 140 14-198 17-160 (218)
437 PRK06793 fliI flagellum-specif 99.5 2.9E-14 6.2E-19 132.3 11.2 164 3-213 133-304 (432)
438 PF13304 AAA_21: AAA domain; P 99.5 2.6E-14 5.6E-19 120.7 9.8 66 129-194 233-302 (303)
439 cd01124 KaiC KaiC is a circadi 99.5 4.6E-14 9.9E-19 116.6 10.8 143 29-205 1-163 (187)
440 PRK03918 chromosome segregatio 99.5 4.8E-14 1E-18 142.2 10.0 79 126-205 782-867 (880)
441 PRK01156 chromosome segregatio 99.5 1.3E-13 2.8E-18 139.5 12.7 93 112-205 765-883 (895)
442 TIGR00606 rad50 rad50. This fa 99.5 1E-13 2.2E-18 144.9 11.5 72 128-199 1195-1278(1311)
443 PRK10246 exonuclease subunit S 99.5 1.1E-13 2.3E-18 141.9 10.6 81 126-206 943-1032(1047)
444 TIGR02168 SMC_prok_B chromosom 99.5 1E-13 2.3E-18 142.6 8.6 79 126-205 1083-1165(1179)
445 PRK13830 conjugal transfer pro 99.5 1.8E-12 3.9E-17 129.9 17.0 68 148-215 650-728 (818)
446 COG0178 UvrA Excinuclease ATPa 99.5 1.4E-12 3E-17 126.5 15.2 132 87-220 427-577 (935)
447 cd01120 RecA-like_NTPases RecA 99.4 4.6E-13 9.9E-18 107.0 9.5 130 29-195 1-141 (165)
448 TIGR02788 VirB11 P-type DNA tr 99.4 3.3E-13 7.1E-18 121.0 7.6 142 20-218 137-279 (308)
449 COG3910 Predicted ATPase [Gene 99.4 3.2E-12 6.9E-17 105.3 11.3 177 13-210 22-207 (233)
450 TIGR02169 SMC_prok_A chromosom 99.4 1.1E-12 2.4E-17 135.3 9.4 79 127-206 1069-1151(1164)
451 PRK06995 flhF flagellar biosyn 99.4 1.6E-12 3.4E-17 122.3 9.4 170 16-210 245-430 (484)
452 TIGR03238 dnd_assoc_3 dnd syst 99.4 2.1E-13 4.6E-18 126.9 3.0 67 15-83 20-87 (504)
453 PRK02224 chromosome segregatio 99.3 7.9E-12 1.7E-16 126.3 9.2 78 129-207 778-869 (880)
454 TIGR02655 circ_KaiC circadian 99.3 7.9E-14 1.7E-18 132.2 -5.9 160 23-205 17-190 (484)
455 PRK06067 flagellar accessory p 99.3 5.5E-11 1.2E-15 102.3 12.3 160 15-205 12-186 (234)
456 TIGR03881 KaiC_arch_4 KaiC dom 99.2 2.1E-12 4.5E-17 110.7 1.8 165 16-205 8-188 (229)
457 cd02023 UMPK Uridine monophosp 99.2 7.1E-12 1.5E-16 105.1 4.9 114 29-166 1-114 (198)
458 cd01131 PilT Pilus retraction 99.2 7.1E-11 1.5E-15 99.4 9.2 119 29-205 3-122 (198)
459 smart00382 AAA ATPases associa 99.2 1.7E-09 3.8E-14 83.0 16.0 117 26-190 1-125 (148)
460 cd01130 VirB11-like_ATPase Typ 99.2 4.3E-11 9.3E-16 99.7 5.8 84 16-101 14-99 (186)
461 PRK07196 fliI flagellum-specif 99.1 5.5E-11 1.2E-15 110.6 6.3 89 13-102 142-240 (434)
462 PRK06002 fliI flagellum-specif 99.1 1.3E-10 2.9E-15 108.2 8.0 83 1-84 140-230 (450)
463 TIGR00611 recf recF protein. A 99.1 1.5E-10 3.2E-15 106.2 7.9 63 131-195 274-345 (365)
464 cd01125 repA Hexameric Replica 99.1 5.7E-10 1.2E-14 96.4 10.0 46 146-192 107-160 (239)
465 PRK13891 conjugal transfer pro 99.1 3.9E-09 8.4E-14 106.5 16.8 54 143-196 680-735 (852)
466 TIGR01026 fliI_yscN ATPase Fli 99.1 3.2E-09 6.8E-14 99.4 14.9 174 13-216 150-344 (440)
467 PRK06315 type III secretion sy 99.0 5.7E-10 1.2E-14 104.1 7.5 165 14-214 152-344 (442)
468 PRK09825 idnK D-gluconate kina 99.0 3.4E-10 7.3E-15 93.7 4.4 69 26-98 2-70 (176)
469 COG0419 SbcC ATPase involved i 99.0 1.9E-09 4.2E-14 109.5 10.1 79 127-206 810-897 (908)
470 PRK05399 DNA mismatch repair p 99.0 5.6E-09 1.2E-13 105.2 12.6 135 15-200 596-738 (854)
471 PRK13898 type IV secretion sys 99.0 3.3E-08 7.2E-13 99.3 18.0 51 146-196 638-690 (800)
472 PLN03210 Resistant to P. syrin 99.0 3.9E-09 8.4E-14 109.7 11.6 144 20-205 200-349 (1153)
473 TIGR02680 conserved hypothetic 98.9 1.4E-09 3.1E-14 114.1 7.9 64 126-191 1241-1316(1353)
474 PRK14079 recF recombination pr 98.9 2.5E-09 5.4E-14 97.6 7.6 78 131-214 262-348 (349)
475 TIGR02903 spore_lon_C ATP-depe 98.9 8.5E-09 1.8E-13 100.5 11.0 110 26-177 174-291 (615)
476 cd01876 YihA_EngB The YihA (En 98.9 5.8E-09 1.3E-13 83.1 7.5 140 30-178 2-169 (170)
477 TIGR01420 pilT_fam pilus retra 98.8 4.4E-08 9.5E-13 89.2 12.4 122 25-204 120-242 (343)
478 TIGR00554 panK_bact pantothena 98.8 3.7E-09 8.1E-14 93.9 5.1 75 27-102 62-138 (290)
479 PRK00300 gmk guanylate kinase; 98.8 7.2E-09 1.6E-13 87.1 6.5 28 25-52 3-30 (205)
480 TIGR00416 sms DNA repair prote 98.8 1E-08 2.2E-13 96.6 8.0 138 23-208 90-247 (454)
481 TIGR00235 udk uridine kinase. 98.8 2.2E-09 4.7E-14 90.8 1.8 29 25-53 4-32 (207)
482 PRK00454 engB GTP-binding prot 98.8 2.7E-09 5.9E-14 88.4 2.1 63 112-178 126-192 (196)
483 PRK09270 nucleoside triphospha 98.8 1E-08 2.3E-13 88.0 5.6 75 24-102 30-108 (229)
484 cd00009 AAA The AAA+ (ATPases 98.7 7.3E-08 1.6E-12 74.6 9.2 54 138-192 72-131 (151)
485 PRK07594 type III secretion sy 98.7 1.2E-08 2.6E-13 95.1 5.4 61 3-64 132-192 (433)
486 PRK10078 ribose 1,5-bisphospho 98.7 1.5E-08 3.2E-13 84.3 5.5 54 27-83 2-56 (186)
487 TIGR02546 III_secr_ATP type II 98.7 3E-08 6.5E-13 92.5 7.8 83 8-91 127-216 (422)
488 cd01136 ATPase_flagellum-secre 98.7 3.1E-08 6.6E-13 89.3 7.3 58 6-64 49-106 (326)
489 PRK08149 ATP synthase SpaL; Va 98.7 2.6E-08 5.7E-13 92.7 7.0 71 13-84 138-216 (428)
490 PRK01889 GTPase RsgA; Reviewed 98.7 3.1E-08 6.7E-13 90.7 7.1 78 17-97 185-262 (356)
491 PRK09862 putative ATP-dependen 98.7 2E-08 4.4E-13 95.4 5.3 61 4-65 188-248 (506)
492 cd01121 Sms Sms (bacterial rad 98.7 7.6E-08 1.6E-12 88.5 8.7 137 23-207 78-234 (372)
493 PRK10416 signal recognition pa 98.7 2.3E-08 4.9E-13 90.2 5.0 73 25-97 112-191 (318)
494 TIGR00152 dephospho-CoA kinase 98.7 3.3E-08 7.1E-13 82.3 5.6 71 136-208 61-134 (188)
495 PRK13873 conjugal transfer ATP 98.7 5.5E-07 1.2E-11 90.7 14.9 62 147-208 632-704 (811)
496 cd01854 YjeQ_engC YjeQ/EngC. 98.7 3E-08 6.4E-13 88.2 5.2 83 17-100 152-242 (287)
497 PF00488 MutS_V: MutS domain V 98.6 1.2E-06 2.6E-11 75.7 14.8 47 149-195 121-170 (235)
498 TIGR02524 dot_icm_DotB Dot/Icm 98.6 3.5E-08 7.5E-13 90.3 5.2 59 25-83 132-193 (358)
499 PF13555 AAA_29: P-loop contai 98.6 2.8E-08 6.1E-13 67.9 2.6 39 17-55 12-51 (62)
500 PF13558 SbcCD_C: Putative exo 98.6 1.1E-07 2.3E-12 70.1 5.6 51 127-177 27-90 (90)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-69 Score=451.31 Aligned_cols=219 Identities=27% Similarity=0.456 Sum_probs=206.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC--ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT--DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~~i~~ 78 (251)
|+++||+|+|| +..+|++||++|++||+++|+||||||||||||||++|.+|++|+|+++|+++.. ....+|+++|+
T Consensus 3 i~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 3 IEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred EEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 58999999997 4889999999999999999999999999999999999999999999999988743 45678899999
Q ss_pred EccCCCCCCCCCHHHHHHHHH-HhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 79 CPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
|||+++|||++||.||+.++. ...+.+++++++++.++|+++||.+..+.+|.+|||||||||+|||||+.+|+++|+|
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD 161 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD 161 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec
Confidence 999999999999999999864 4678889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
||||+|||+...++++.+++++ +|.|.|++||+|.++.++||||++|++|+++++|+|+++..
T Consensus 162 EPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 162 EPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 9999999999999999999996 59999999999999999999999999999999999886643
No 2
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-65 Score=446.19 Aligned_cols=218 Identities=27% Similarity=0.441 Sum_probs=205.8
Q ss_pred CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC----ChHHh
Q psy7367 1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT----DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~----~~~~~ 72 (251)
|++++++|.|..+ ..+|+||||+|++||++||+|+||||||||+||+++|.+|++|+|.++|+++.. ..+..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 5899999999641 469999999999999999999999999999999999999999999999998853 33567
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
|++|||+||+++|+...||++|++|++++.+.++++.++++.++|+.+||+++.+++|.+|||||||||+|||||+.+|+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~ 161 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPK 161 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
+||.|||||+|||...+.++++|+++. + |.||+++||.|+.+.++|||+.+|++|++++.|+..++
T Consensus 162 iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 162 ILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred EEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999995 4 99999999999999999999999999999999987644
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-65 Score=434.80 Aligned_cols=218 Identities=30% Similarity=0.468 Sum_probs=207.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|+||+|+ ++.+++|+||+|++||+++++|||||||||+||+|++|+.|++|+|+++|+++.. +..++|++||||
T Consensus 2 I~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 2 IEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred ceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 58999999996 5889999999999999999999999999999999999999999999999999975 566889999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc--ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH--KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
-|...|||++||.||+.+.-.+.+.++++.+++++++|+.+||++ +.+++|++|||||||||.+||||+.+|+++|||
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD 160 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD 160 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec
Confidence 999999999999999999888888888889999999999999974 889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||++|||.+|.++-+.+.+++ + |+|||+||||++++.+++|||.+|++|+++..++|+++.
T Consensus 161 EPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 161 EPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred CCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 9999999999999999999986 3 999999999999999999999999999999999997653
No 4
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-63 Score=444.38 Aligned_cols=218 Identities=28% Similarity=0.418 Sum_probs=205.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++||+|+|++ ..+++++||+|++||+++|+||||||||||||+|+||++|++|+|+++|++++.-.+ .+|.|+|||
T Consensus 4 i~l~~v~K~yg~-~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P-~~R~iamVF 81 (338)
T COG3839 4 LELKNVRKSFGS-FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP-EKRGIAMVF 81 (338)
T ss_pred EEEeeeEEEcCC-ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-hHCCEEEEe
Confidence 579999999964 239999999999999999999999999999999999999999999999999976222 357899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|+..|||+|||+||+.|+++.++.++++.+++++++++.++|+++++++|.+|||||||||+|||||+.+|+++|||||+
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl 161 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL 161 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
|+||+..+..+...|++++ + |.|+|++|||..++..++|||.+|++|++...|+|.++..
T Consensus 162 SnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 162 SNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred hHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 9999999999999999985 3 8999999999999999999999999999999999987644
No 5
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.4e-62 Score=435.21 Aligned_cols=224 Identities=38% Similarity=0.648 Sum_probs=207.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++|+|++++.+|+||||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.++.......+++|||+|
T Consensus 5 i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~ 84 (293)
T COG1131 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVP 84 (293)
T ss_pred eeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEc
Confidence 46799999996247899999999999999999999999999999999999999999999999998765667888999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+||+||+.|++.+++.+....+++++++++.++|.+..++++.+||+|||||++||+||+.+|+++||||||
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt 164 (293)
T COG1131 85 QEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT 164 (293)
T ss_pred cCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 99999999999999999999988765555678999999999998778899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CC-CeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcC
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KG-RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFAR 224 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g-~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 224 (251)
+||||.++..++++|++++ +| +||+++||.+++++.+||||++|++|++++.|++..+...+..
T Consensus 165 ~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 165 SGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 9999999999999999996 45 8999999999999999999999999999999998887665443
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.1e-63 Score=417.13 Aligned_cols=220 Identities=31% Similarity=0.494 Sum_probs=205.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC----ChHHhhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT----DMTTIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~----~~~~~~~~i 76 (251)
|++++|+++|+ ++.+++|+||+|++||+++|+||||||||||||+|.|+++|++|+|+++|+++.. ...++++++
T Consensus 9 I~vr~v~~~fG-~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~ 87 (263)
T COG1127 9 IEVRGVTKSFG-DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM 87 (263)
T ss_pred EEEeeeeeecC-CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhhe
Confidence 57999999996 4889999999999999999999999999999999999999999999999999854 123568899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGSRTV 154 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~~~p~ll 154 (251)
|++||...||..|||+||+.|+.+- ...+++..++.+..-|+.+||... .+++|++|||||++|++||||++.+|+++
T Consensus 88 GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell 167 (263)
T COG1127 88 GVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELL 167 (263)
T ss_pred eEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999998764 467788888889999999999977 89999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhhC--CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 155 ILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 155 llDEPt~gLD~~~~~~l~~~l~~l~~--g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
++||||+||||.+...+-++|+++++ |.|+++||||++.+..+|||++++.+|+|++.|+++++...
T Consensus 168 ~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 168 FLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred EecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 99999999999999999999999964 99999999999999999999999999999999999887653
No 7
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-63 Score=420.24 Aligned_cols=205 Identities=25% Similarity=0.427 Sum_probs=191.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++++++.|++ ..+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.++|+++..+ ...++|||
T Consensus 4 l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p----~~~~~~vF 78 (248)
T COG1116 4 LEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP----GPDIGYVF 78 (248)
T ss_pred EEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC----CCCEEEEe
Confidence 478999999975 8899999999999999999999999999999999999999999999999988432 45799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.|+|++||+||+.|+....+.++.+.++++.++|+.+||.++.+++|++|||||||||+|||||+.+|++|||||||
T Consensus 79 Q~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF 158 (248)
T COG1116 79 QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158 (248)
T ss_pred ccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999999998877777777789999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeC--CEEE
Q psy7367 161 SGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAA--GKLQ 210 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~--G~i~ 210 (251)
++||..++..+.+.+.++. .++||++||||++++-.++|||++|.+ |+|.
T Consensus 159 gALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 159 GALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred chhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 9999999999999999973 389999999999999999999999999 4453
No 8
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-63 Score=410.35 Aligned_cols=221 Identities=29% Similarity=0.483 Sum_probs=210.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
+++.+++|+|+....+++||||+++.||++||+|||||||||+||+|++++.|++|.|+++|.+....+...|++||.+|
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~ 81 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLF 81 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceec
Confidence 57899999997634599999999999999999999999999999999999999999999999999877778899999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
.+..+|..||++|||.|+++++++.+.+.+++++++.+.|+|.+.+++++++||.||||||+|||||+++|++++|||||
T Consensus 82 ~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~ 161 (245)
T COG4555 82 GERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPT 161 (245)
T ss_pred CCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 161 SGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
||||..+++.+.+.+.++++ |++||++||+|++++.+|||++++++|+++..|+++.+...
T Consensus 162 sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 162 SGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999975 99999999999999999999999999999999999876554
No 9
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.9e-63 Score=427.23 Aligned_cols=217 Identities=27% Similarity=0.380 Sum_probs=199.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++||+++|+ ++++|+|+||++++||+++|+||||||||||||+|+|+++|.+|+|+++|+++.. +.+++.+.++|+
T Consensus 3 L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 3 LEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 57999999996 5899999999999999999999999999999999999999999999999999965 556788999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHh----cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQL----KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
||.+...+++||+|.+.++..- .....++..+.+.++|+.+++.+++++++.+|||||||||.|||||+++|++||
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLL 161 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILL 161 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEE
Confidence 9999888889999999986431 222244455679999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|||||++||..++.+++++++++. + |+|||+++||++.+.++||++++|++|++++.|+|+++
T Consensus 162 LDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 162 LDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred eCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence 999999999999999999999995 4 99999999999999999999999999999999998643
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-63 Score=445.63 Aligned_cols=216 Identities=28% Similarity=0.451 Sum_probs=202.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++||+|+|+ +..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++..- +..+|.||+||
T Consensus 6 l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~l-pp~kR~ig~VF 83 (352)
T COG3842 6 LEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDV-PPEKRPIGMVF 83 (352)
T ss_pred EEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-Chhhcccceee
Confidence 57999999997 58899999999999999999999999999999999999999999999999999752 33468999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP 159 (251)
|+..|||+|||+||+.|+++..+ .++++.++++.++++.++|+++.+++|.+|||||||||+|||||+.+|++||||||
T Consensus 84 Q~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEP 163 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP 163 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCc
Confidence 99999999999999999998554 44566788999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 160 TSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 160 t~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
.|+||...|.++...++++. + |.|.|++|||.+++..++|||++|++|+|...|+|+++
T Consensus 164 lSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 164 LSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHH
Confidence 99999999999999999984 3 99999999999999999999999999999999999866
No 11
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.8e-62 Score=399.35 Aligned_cols=213 Identities=25% Similarity=0.427 Sum_probs=203.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC----ChHHhhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT----DMTTIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~----~~~~~~~~i 76 (251)
|+++||+|+|++++++|+||||+|++||++.|+||||||||||||+|++.++|++|+|+++|+++.. ..+-+|++|
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 5789999999877789999999999999999999999999999999999999999999999999853 334679999
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
|+|||+..|.+++||+||++|+++..+.++.+.++++.++|+.+||.+..+..|.+|||||||||+||||++.+|++||.
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlA 161 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLA 161 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
||||.+|||.....+++++.++. .|+||+|+|||.+.+.++--|++.+++|+++.+.
T Consensus 162 DEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 162 DEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred cCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999996 4999999999999999999999999999998764
No 12
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=6.6e-61 Score=428.70 Aligned_cols=220 Identities=32% Similarity=0.580 Sum_probs=204.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++||+|+|+ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.......+++|||+|
T Consensus 8 i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~ 86 (306)
T PRK13537 8 IDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVP 86 (306)
T ss_pred EEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEe
Confidence 57899999996 47899999999999999999999999999999999999999999999999998654455678999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+||+||+.++...++.+..+..+++.++++.+++.+..++++.+||+|||||++||+||+.+|++|||||||
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt 166 (306)
T PRK13537 87 QFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT 166 (306)
T ss_pred ccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 99999999999999998877776665666677889999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+|||+.+++.++++|++++ +|+|||++||++++++++|||+++|++|++++.|+++++...
T Consensus 167 ~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 167 TGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999986 599999999999999999999999999999999999877544
No 13
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.1e-61 Score=407.37 Aligned_cols=209 Identities=25% Similarity=0.431 Sum_probs=189.0
Q ss_pred CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC----hHHh-
Q psy7367 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD----MTTI- 72 (251)
Q Consensus 1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~----~~~~- 72 (251)
++++||+|.|+.+ ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|+|+++|+++... ...+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 5789999999643 3699999999999999999999999999999999999999999999999998642 1233
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccC-CCCCcCChhHHHHHHHHHHHccCC
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRT-SLANTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~kqrv~ia~al~~~p 151 (251)
+++||||||+.+|.|.+||.||+.+++.+.+.+.....++++++++.+||.+..+ ++|.+|||||||||||||||+.+|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P 161 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNP 161 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCC
Confidence 4689999999999999999999999988877665455678899999999997666 889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~ 210 (251)
+++|+||||.+||.++.+.++++++++. + |+||||||||...+. +|||++.|++|++.
T Consensus 162 ~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 162 KIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred CeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 9999999999999999999999999984 4 999999999998886 79999999999953
No 14
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-62 Score=409.79 Aligned_cols=227 Identities=27% Similarity=0.448 Sum_probs=205.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC----ChHHhhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT----DMTTIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~----~~~~~~~~i 76 (251)
|+++||++.|++++++|++|||+|++||+++|+||||||||||||+|+|+..|++|+|.++|.++.. ..+.+|++|
T Consensus 4 i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~i 83 (258)
T COG3638 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDI 83 (258)
T ss_pred EEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhc
Confidence 5899999999667899999999999999999999999999999999999999999999999988753 245678999
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHH--------hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQ--------LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~--------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
||+||.++|.+.+||.+|+..+.. +.+...++.+..+-++|+++|+.+.+.++..+|||||||||+|||||+
T Consensus 84 GmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~ 163 (258)
T COG3638 84 GMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALV 163 (258)
T ss_pred eeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHh
Confidence 999999999999999999987532 234555666778889999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcCcc
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGY 226 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 226 (251)
++|+++|.|||+++|||.+.+.+++.|+++. +|.|||++.|+++.+.+||||++-|++|+++++|++.++....-...
T Consensus 164 Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~~~~~i 243 (258)
T COG3638 164 QQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDEALDEI 243 (258)
T ss_pred cCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhHHHHHHH
Confidence 9999999999999999999999999999984 49999999999999999999999999999999999987765544444
Q ss_pred e
Q psy7367 227 Y 227 (251)
Q Consensus 227 ~ 227 (251)
|
T Consensus 244 Y 244 (258)
T COG3638 244 Y 244 (258)
T ss_pred h
Confidence 4
No 15
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-61 Score=411.52 Aligned_cols=215 Identities=25% Similarity=0.427 Sum_probs=189.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++. +||+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|++.....+ +.+|||||
T Consensus 5 i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~--~~~IgYVP 81 (254)
T COG1121 5 IEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK--RLRIGYVP 81 (254)
T ss_pred EEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc--CCeEEEcC
Confidence 5799999999643 79999999999999999999999999999999999999999999999988754221 46899999
Q ss_pred cCCCC--CCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367 81 QYNAL--FDKLTVEEHMWFYSQLK----QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV 154 (251)
Q Consensus 81 q~~~l--~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll 154 (251)
|...+ -.++||+|.+.++...+ +...+..+++++++|+++|+.++.++++++|||||+|||.|||||+++|++|
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ll 161 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLL 161 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEE
Confidence 96532 23479999999864321 2223344678999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 155 ILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 155 llDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+|||||+|+|+.++..++++|.+++ +|+||++||||++.+.++||+++.| |+++.+.|++++..
T Consensus 162 lLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~ 226 (254)
T COG1121 162 LLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVL 226 (254)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhcc
Confidence 9999999999999999999999996 4999999999999999999999999 57888999987553
No 16
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=7.9e-60 Score=426.91 Aligned_cols=220 Identities=32% Similarity=0.542 Sum_probs=202.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++||+|+|+ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.......++.|||+|
T Consensus 42 i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~ 120 (340)
T PRK13536 42 IDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVP 120 (340)
T ss_pred EEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEe
Confidence 57899999996 47899999999999999999999999999999999999999999999999998654455678999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+||+||+.++...++....+..+++.++++.++|.+..++++.+||+|||||++||+||+++|++|||||||
T Consensus 121 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt 200 (340)
T PRK13536 121 QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200 (340)
T ss_pred CCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 99999999999999998776666555555667889999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+||||.++..++++|++++ +|.|||++||++++++++||||++|++|++++.|+++++...
T Consensus 201 ~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 201 TGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999985 599999999999999999999999999999999999887554
No 17
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=9.6e-60 Score=426.33 Aligned_cols=219 Identities=29% Similarity=0.425 Sum_probs=200.4
Q ss_pred CEEEeEEEEeCC---CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch---HHhh
Q psy7367 1 MAIQNLSKRFPN---GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM---TTIR 73 (251)
Q Consensus 1 l~i~~l~~~y~~---~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~---~~~~ 73 (251)
|+++|++|+|++ ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. .. ...+
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 589999999952 2479999999999999999999999999999999999999999999999999854 22 2357
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCE
Q psy7367 74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRT 153 (251)
Q Consensus 74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~l 153 (251)
++|||+||++.+++.+||+||+.++....+.+..+..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~i 161 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV 161 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 79999999999999999999999987766666666677899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 154 VILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 154 lllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||||||++||+.++..++++|++++ + |.|||++||+++.+.++||++++|++|++++.|+++++.
T Consensus 162 LLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 162 LLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999985 4 899999999999999999999999999999999987653
No 18
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-61 Score=415.65 Aligned_cols=218 Identities=23% Similarity=0.424 Sum_probs=200.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcce---eCCCChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH---DIRTDMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~---~~~~~~~~~~~~i~ 77 (251)
++++|+++.|+ ...+++|||++|+.||+++|+||||||||||||+|+||+.|++|.|.++|+ |.+. .....++||
T Consensus 3 i~i~~~~~~~~-~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~-~~~~~R~VG 80 (345)
T COG1118 3 IRINNVKKRFG-AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN-LAVRDRKVG 80 (345)
T ss_pred eeehhhhhhcc-cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc-cchhhccee
Confidence 46889999996 488999999999999999999999999999999999999999999999999 5443 222347899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQ--VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
||||+..+|++|||.+||+|+.+.++ .+....+.++.++|+.+.|+...+++|.+|||||||||++||||+.+|++||
T Consensus 81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLL 160 (345)
T COG1118 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLL 160 (345)
T ss_pred EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEe
Confidence 99999999999999999999987652 3356677899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
||||+++||...+..+...|+++. + |.|+|+||||.+++.++||||++|++|+|...|++.++..
T Consensus 161 LDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 161 LDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred ecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999985 4 9999999999999999999999999999999999987743
No 19
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-60 Score=405.71 Aligned_cols=219 Identities=28% Similarity=0.479 Sum_probs=204.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC--CChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR--TDMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~--~~~~~~~~~i~~ 78 (251)
++++|++++|+++..+|+++||+|++||+++|+||||||||||+++++|+++|++|+|.++|.++. .....+++++||
T Consensus 4 i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~ 83 (235)
T COG1122 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGL 83 (235)
T ss_pred EEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEE
Confidence 468999999975568999999999999999999999999999999999999999999999999986 345678899999
Q ss_pred EccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 79 CPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 79 v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
|||+| ++|. -||.|.++|+....+.+.++.++++.++++.+++.++++++|.+|||||||||+||.+|+.+|++|||
T Consensus 84 VfQnpd~q~~~-~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliL 162 (235)
T COG1122 84 VFQNPDDQLFG-PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLL 162 (235)
T ss_pred EEECccccccc-CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEE
Confidence 99998 4554 59999999999988999888999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
|||||+||+.+++.+++++++++ + |+|||++|||++.+..+|||+++|++|+++.+|+|.++.+
T Consensus 163 DEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 163 DEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 99999999999999999999996 4 6999999999999999999999999999999999876543
No 20
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-59 Score=426.88 Aligned_cols=217 Identities=21% Similarity=0.348 Sum_probs=199.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .++.|||+|
T Consensus 4 l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~-~~r~ig~v~ 82 (356)
T PRK11650 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP-ADRDIAMVF 82 (356)
T ss_pred EEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HHCCEEEEe
Confidence 4789999999324789999999999999999999999999999999999999999999999999864222 357899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+|+++||+||+.|+.+.++.+..+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~ 162 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL 162 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999999999999877666666666678999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
++||+..++.+.+.|+++. + |.|+|++|||++++..+||++++|++|+++..|+++++
T Consensus 163 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~ 222 (356)
T PRK11650 163 SNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222 (356)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999984 4 89999999999999999999999999999999998766
No 21
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-60 Score=400.06 Aligned_cols=219 Identities=26% Similarity=0.390 Sum_probs=198.1
Q ss_pred CEEEeEEEEeCCCc---ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC--ChHHhhcc
Q psy7367 1 MAIQNLSKRFPNGK---LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT--DMTTIRRS 75 (251)
Q Consensus 1 l~i~~l~~~y~~~~---~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~~ 75 (251)
++++|+++.|++++ ++|++|||+|.+||++||+|+||||||||.++|+|+.+|++|+|.++|+++.. +.+..++.
T Consensus 4 l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~ 83 (252)
T COG1124 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRP 83 (252)
T ss_pred EEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccc
Confidence 57999999997533 49999999999999999999999999999999999999999999999988743 23356789
Q ss_pred eEEEccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 76 LGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 76 i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
|-+|||+| .+-|.+||.+.|.-+....+.+..+ +++.++++.+||. .+++++|.+|||||+||+||||||+.+|+
T Consensus 84 VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~--~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 84 VQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQ--QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred eeEEecCCccccCcchhHHHHHhhhhccCCccHHH--HHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 99999998 6788899999998888776665543 4499999999997 67899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhC--CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~~--g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+||||||||+||+..+.+++++|.++++ +.|+|++|||+..++.+||||++|++|++++.++..++...
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999963 88999999999999999999999999999999998776554
No 22
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=4.8e-59 Score=415.86 Aligned_cols=220 Identities=29% Similarity=0.497 Sum_probs=203.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++|+|+ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++......+++++||+|
T Consensus 3 l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 3 IRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 57899999996 47899999999999999999999999999999999999999999999999998654455678899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+|+.||+.+....++.+..+..++++++++.++|.+..++++..||+|||||++||+||+.+|++|||||||
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999998877766555555667899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 161 SGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+|||+.+++.++++++++++++|||++||++++++++|||+++|++|++++.|+++.+...
T Consensus 162 ~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 162 TGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999997789999999999999999999999999999999999887554
No 23
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=3.6e-59 Score=424.53 Aligned_cols=217 Identities=25% Similarity=0.413 Sum_probs=201.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++..... .++.|||+|
T Consensus 5 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~-~~r~ig~v~ 82 (353)
T TIGR03265 5 LSIDNIRKRFGA-FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP-QKRDYGIVF 82 (353)
T ss_pred EEEEEEEEEeCC-eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HHCCEEEEe
Confidence 578999999964 779999999999999999999999999999999999999999999999999864222 357899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+||++||+||+.|+...++.+..+..++++++++.++|.++.++++.+|||||||||+|||||+.+|+++||||||
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~ 162 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL 162 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999999877666666667778999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
++||+..++.+.+.|+++. + |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus 163 s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 163 SALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999984 4 899999999999999999999999999999999987654
No 24
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=8.2e-59 Score=414.68 Aligned_cols=220 Identities=31% Similarity=0.547 Sum_probs=200.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.......++.+||+|
T Consensus 5 i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 83 (303)
T TIGR01288 5 IDLVGVSKSYGD-KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVP 83 (303)
T ss_pred EEEEeEEEEeCC-eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEe
Confidence 578999999964 7799999999999999999999999999999999999999999999999988544445678899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+||+||+.++...++....+..++++++++.+++.+..++++.+||||||||++||+||+.+|++|||||||
T Consensus 84 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (303)
T TIGR01288 84 QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPT 163 (303)
T ss_pred ccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99999999999999987665555444455567888999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+|||+.+++.++++|++++ +|.|||++|||++++..+||++++|++|+++..|+++.+...
T Consensus 164 ~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 164 TGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999985 589999999999999999999999999999999998877544
No 25
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-59 Score=400.41 Aligned_cols=218 Identities=29% Similarity=0.484 Sum_probs=196.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h---HHhhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M---TTIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~---~~~~~~i 76 (251)
|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... . ..+++.|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 68999999996 46799999999999999999999999999999999999999999999999987532 1 3456789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
+|+||++.+++.+||.||+.++.... +....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 159 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999998865432 23444555678899999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||||+|||+.+++.++++|+++. + |+|||++|||++++..+||++++|++|++++.|+++.+.
T Consensus 160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 160 YDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999999999984 3 899999999999999999999999999999999887653
No 26
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-59 Score=423.68 Aligned_cols=217 Identities=24% Similarity=0.403 Sum_probs=201.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... ..+++|||+|
T Consensus 7 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~~r~ig~vf 84 (351)
T PRK11432 7 VVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-IQQRDICMVF 84 (351)
T ss_pred EEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEEEe
Confidence 57899999996 477999999999999999999999999999999999999999999999999986432 2357899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+|+++||+||+.|+.+.++.+..+..++++++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus 85 Q~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~ 164 (351)
T PRK11432 85 QSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPL 164 (351)
T ss_pred CCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 99999999999999999887766666667788999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
++||+..+..+.+.|+++. + |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus 165 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 165 SNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999984 3 899999999999999999999999999999999997653
No 27
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-59 Score=397.01 Aligned_cols=216 Identities=37% Similarity=0.590 Sum_probs=196.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++......++++++|+|
T Consensus 1 i~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYGD-FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEECC-EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 689999999964 7899999999999999999999999999999999999999999999999987543345567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+||+||+.+....++....+..+++.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt 159 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999998766555544455667899999999998889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 217 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 217 (251)
++||+.+++.++++|+++. + |.|||++|||++++..+|||+++|++|+++..+++++
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 160 IGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 9999999999999999984 4 8999999999999999999999999999998887654
No 28
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-60 Score=391.48 Aligned_cols=217 Identities=24% Similarity=0.377 Sum_probs=200.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----eeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-----SGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~---~~~~~ 72 (251)
++++||++.|+ .+.+|++||++|++++++|+|||||||||||||+++.+.... +|+|.++|+++.. +..++
T Consensus 8 ~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~l 86 (253)
T COG1117 8 IEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVEL 86 (253)
T ss_pred eEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHH
Confidence 46889999997 588999999999999999999999999999999999987665 4999999999954 35678
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
|++||+|||.|+-|| +|++||+.|+.++++...++..+.++..|+...|. +.+++.+..||||||||++|||||+
T Consensus 87 Rr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA 165 (253)
T COG1117 87 RRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA 165 (253)
T ss_pred HHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh
Confidence 999999999999998 89999999999998877777778899999998774 4677889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
.+|++||||||||+|||.+..++-+++.++++..|||||||+|..+.+++|+..++..|++++.|+.+.+.
T Consensus 166 v~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 166 VKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred cCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999987653
No 29
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=9.5e-59 Score=422.76 Aligned_cols=217 Identities=25% Similarity=0.417 Sum_probs=200.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCe--eEEEEcceeCCCChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSS--GTAKIYNHDIRTDMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~--G~i~~~g~~~~~~~~~~~~~i~~ 78 (251)
|+++|++++|++ +.+|+++||+|++||+++|+|||||||||||++|+|+++|++ |+|+++|+++.... ..++.|+|
T Consensus 6 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~-~~~r~ig~ 83 (362)
T TIGR03258 6 IRIDHLRVAYGA-NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP-PHKRGLAL 83 (362)
T ss_pred EEEEEEEEEECC-eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC-HHHCCEEE
Confidence 578999999964 679999999999999999999999999999999999999999 99999999985422 23578999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
+||++.+|+++||+||+.|+...++.+..+..+++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||
T Consensus 84 vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE 163 (362)
T TIGR03258 84 LFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE 163 (362)
T ss_pred EECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999999999999999998876666666667789999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhh-C--CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 159 PTSGVDPYSRRSIWELLIKYK-K--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~-~--g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
||++||+..+..+++.|+++. + |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus 164 P~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 164 PLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999984 3 799999999999999999999999999999999987663
No 30
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.5e-58 Score=394.30 Aligned_cols=217 Identities=54% Similarity=0.877 Sum_probs=197.3
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 79 (251)
|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......++++++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 6899999999632 679999999999999999999999999999999999999999999999998854344566789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP 159 (251)
||++.+++.+|++||+.+....++.......+++.++++.+++.+..++++.+||+|||||++|||||+.+|++||||||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 160 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 99999998999999999876655544444556788999999999888999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367 160 TSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 217 (251)
Q Consensus 160 t~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 217 (251)
|++||+.+++.+.++|++++++.|||++||+++++.++||++++|++|+++..|+++.
T Consensus 161 ~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 161 TSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999999998767999999999999999999999999999999988764
No 31
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.3e-58 Score=413.19 Aligned_cols=215 Identities=40% Similarity=0.632 Sum_probs=196.7
Q ss_pred EEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCC
Q psy7367 8 KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87 (251)
Q Consensus 8 ~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~ 87 (251)
|+|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++......+++.+||+||++.+++
T Consensus 1 k~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 1 KVYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred CeeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence 4685 478999999999999999999999999999999999999999999999999986544456778999999999999
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q psy7367 88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167 (251)
Q Consensus 88 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~ 167 (251)
.+||+||+.++...++....+..+++.++++.+++.+..++++.+|||||||||+||+||+.+|++|||||||+|||+.+
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 159 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 99999999988776665555556678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhc
Q psy7367 168 RRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFA 223 (251)
Q Consensus 168 ~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 223 (251)
++.++++|++++ +|.|||++||+++++.++||++++|++|+++..|+++++...+.
T Consensus 160 ~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~ 216 (302)
T TIGR01188 160 RRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLG 216 (302)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhcC
Confidence 999999999985 58999999999999999999999999999999999988765543
No 32
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-58 Score=392.35 Aligned_cols=211 Identities=30% Similarity=0.448 Sum_probs=190.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++.++|+|
T Consensus 1 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~i~~v~ 78 (213)
T cd03259 1 LELKGLSKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP-PERRNIGMVF 78 (213)
T ss_pred CeeeeeEEEeCC-eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc-hhhccEEEEc
Confidence 579999999964 78999999999999999999999999999999999999999999999999885422 2356899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+|++||+.+.....+.......+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt 158 (213)
T cd03259 79 QDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPL 158 (213)
T ss_pred CchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999988655444444445567889999999998899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 161 SGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
+|||+.++..++++|+++. .|.|||++|||++++..+||++++|++|++++.|
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 159 SALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999984 3899999999999999999999999999998654
No 33
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.4e-58 Score=393.63 Aligned_cols=209 Identities=27% Similarity=0.497 Sum_probs=188.3
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-C---hHHhhcc
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-D---MTTIRRS 75 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~---~~~~~~~ 75 (251)
++++|++++|+++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. . ...+++.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 5799999999543 469999999999999999999999999999999999999999999999998743 1 1235678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
++|+||++.+++.+||.||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 161 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLL 161 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999987665444444455678999999999998999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i 209 (251)
|||||+|||+.+++.+.++|++++ +|.|||++|||++++..+||++++|++|++
T Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 162 ADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999985 589999999999999999999999999974
No 34
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=4.2e-58 Score=420.08 Aligned_cols=217 Identities=24% Similarity=0.380 Sum_probs=199.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ +.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+++.... ..++.++|+|
T Consensus 15 L~l~~l~~~~~~-~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~~r~ig~vf 92 (375)
T PRK09452 15 VELRGISKSFDG-KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AENRHVNTVF 92 (375)
T ss_pred EEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HHHCCEEEEe
Confidence 578999999964 77999999999999999999999999999999999999999999999999985422 2357899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+|+++||+||+.|+...++.+..+..+++.++++.++|.++.+++|.+|||||||||+|||||+.+|++|||||||
T Consensus 93 Q~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~ 172 (375)
T PRK09452 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL 172 (375)
T ss_pred cCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99999999999999999877666566666678899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
++||+..+..+.+.|+++. + |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus 173 s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 173 SALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999984 3 899999999999999999999999999999999987653
No 35
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.9e-58 Score=391.26 Aligned_cols=212 Identities=30% Similarity=0.542 Sum_probs=193.5
Q ss_pred CEEEeEEEEeCCCc----ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcce
Q psy7367 1 MAIQNLSKRFPNGK----LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~----~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 76 (251)
++++|++++|++ + ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......+++.+
T Consensus 2 l~~~~v~~~~~~-~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRD-VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCC-CCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 578999999964 4 79999999999999999999999999999999999999999999999998864444567889
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
+|+||++.+++.+||+||+.+....++....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl 160 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999999876655554555567789999999999989999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
||||++||+.+++.++++|++++ +|.|||++||+++++..+||++++|++|++++.|
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999985 5899999999999999999999999999998653
No 36
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.4e-59 Score=394.23 Aligned_cols=225 Identities=30% Similarity=0.499 Sum_probs=213.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
+++++|+|+|+ ++.|++|+||++++|+++|++|||||||||++|+|.|+++|++|+|.|+|.++.. ..+.+|||+|
T Consensus 3 L~ie~vtK~Fg-~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~---~~~~rIGyLP 78 (300)
T COG4152 3 LEIEGVTKSFG-DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ---EIKNRIGYLP 78 (300)
T ss_pred eEEecchhccC-ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh---hhhhhcccCh
Confidence 57999999996 4889999999999999999999999999999999999999999999999999854 3467899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
.+..||+.+||.|.+.|++++++.+.++.++++..+|+++++.....+++.+||.|++|++.+..|++++|+++|||||+
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPF 158 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPF 158 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcC-cceEE
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFAR-GYYLS 229 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~-~~~~~ 229 (251)
|||||.+.+.+.+.+.+++ +|.|||++||.|+.++++||++++|++|+.+.+|+.+.+++.++. ..+++
T Consensus 159 SGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~~ie 229 (300)
T COG4152 159 SGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIE 229 (300)
T ss_pred cCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceEEEe
Confidence 9999999999999999997 599999999999999999999999999999999999999887765 34444
No 37
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.1e-60 Score=388.91 Aligned_cols=227 Identities=32% Similarity=0.502 Sum_probs=205.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch-HHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM-TTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~-~~~~~~i~~ 78 (251)
|.++|+.|+|+ ++.++++|||++++||++||+|||||||||.+.++.|+.+|++|+|.++|.+++. +. ...|..|||
T Consensus 5 L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigY 83 (243)
T COG1137 5 LVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGY 83 (243)
T ss_pred EEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccc
Confidence 46889999996 4789999999999999999999999999999999999999999999999999975 32 455779999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChH--HHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKD--LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
+||++++|..+||+||+....+.+....+ +.+.+++++|+.|++.+..+++..+||||||+|+.|||||+.+|+++||
T Consensus 84 LpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLL 163 (243)
T COG1137 84 LPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILL 163 (243)
T ss_pred ccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEe
Confidence 99999999999999999998887653333 4445688999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh-hcCcceE
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS-FARGYYL 228 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 228 (251)
||||+|+||.+...+.++++.++ +|..|+|+-|+..+...+|||.+++++|++.++|+|+++.+. .-+.+|+
T Consensus 164 DEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~Vr~~YL 237 (243)
T COG1137 164 DEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVYL 237 (243)
T ss_pred cCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhhhhhcc
Confidence 99999999999999999999997 599999999999999999999999999999999999877543 2234553
No 38
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=5.5e-58 Score=416.82 Aligned_cols=217 Identities=23% Similarity=0.383 Sum_probs=197.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... ..++.|+|+|
T Consensus 3 L~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~~r~i~~v~ 80 (353)
T PRK10851 3 IEIANIKKSFGR-TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-ARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEeCC-eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHCCEEEEe
Confidence 578999999964 78999999999999999999999999999999999999999999999999985422 2357899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLK----QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
|++.+|+++||+||+.|+.... +.+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLL 160 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL 160 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999976542 334455667899999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
||||++||+..+..+.+.|+++. + |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus 161 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999985 4 899999999999999999999999999999999987653
No 39
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-58 Score=417.92 Aligned_cols=216 Identities=25% Similarity=0.425 Sum_probs=198.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .++.|+|+|
T Consensus 4 l~i~~l~~~~~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~-~~~~i~~v~ 81 (369)
T PRK11000 4 VTLRNVTKAYGD-VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP-AERGVGMVF 81 (369)
T ss_pred EEEEEEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH-hHCCEEEEe
Confidence 578999999964 779999999999999999999999999999999999999999999999999854222 356899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+|+++||+||+.|+...++....+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999999999999876555555556678999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
++||+.+++.+++.|+++. + |.|||++|||++++..+||++++|++|+++..|+++++
T Consensus 162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i 221 (369)
T PRK11000 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 (369)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999984 4 89999999999999999999999999999999998765
No 40
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-57 Score=413.89 Aligned_cols=219 Identities=29% Similarity=0.435 Sum_probs=198.9
Q ss_pred CEEEeEEEEeC--C-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch---HHhh
Q psy7367 1 MAIQNLSKRFP--N-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM---TTIR 73 (251)
Q Consensus 1 l~i~~l~~~y~--~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~---~~~~ 73 (251)
|+++|++++|+ + ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. .. ...+
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 57999999996 1 3579999999999999999999999999999999999999999999999999853 21 2346
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCE
Q psy7367 74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRT 153 (251)
Q Consensus 74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~l 153 (251)
++|||+||++.+++.+||.||+.++....+.+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~i 161 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKV 161 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 78999999999999999999999987665555555567789999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 154 VILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 154 lllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||||||+|||+.++..++++|+++. + |+|||++|||++++.++||++++|++|++++.|+++++.
T Consensus 162 LlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 162 LLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999984 4 899999999999999999999999999999999887653
No 41
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-58 Score=387.31 Aligned_cols=211 Identities=32% Similarity=0.569 Sum_probs=191.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++ +++++|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|+++......+++.++|+|
T Consensus 1 i~~~~~~~~~~~-~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYGK-KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEECC-EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 689999999964 67999999999999 9999999999999999999999999999999999987543345678899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+|+.+||.||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 158 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999998766554444445567889999999998889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 161 SGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
+|||+.+++.+.++|++++++.|||++|||++++.++|||+++|++|++++.|
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 159 AGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999876799999999999999999999999999998654
No 42
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-57 Score=417.41 Aligned_cols=217 Identities=26% Similarity=0.415 Sum_probs=200.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ ..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... ..++.|||+|
T Consensus 20 l~l~~v~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~vf 97 (377)
T PRK11607 20 LEIRNLTKSFDG-QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-PYQRPINMMF 97 (377)
T ss_pred EEEEeEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HHHCCEEEEe
Confidence 578999999964 67999999999999999999999999999999999999999999999999985422 3467899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+|+++||+||+.|+.+..+.+..+.++++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus 98 Q~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~ 177 (377)
T PRK11607 98 QSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPM 177 (377)
T ss_pred CCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999999999999877666666666778999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
++||+..+..+.+.|+++ ++ |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus 178 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 178 GALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 999999999999999887 33 899999999999999999999999999999999987653
No 43
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.7e-59 Score=392.40 Aligned_cols=220 Identities=29% Similarity=0.416 Sum_probs=200.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~i~~ 78 (251)
+++++|+|+|| +..+++||||++++||+++||||||||||||+|+|+|+++|++|+|.++|+++... ....+..|+.
T Consensus 5 L~v~~l~k~FG-Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 5 LEVRGLSKRFG-GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred eeeccceeecC-CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcccee
Confidence 46899999997 48899999999999999999999999999999999999999999999999999752 2345778999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhc------------CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLK------------QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~a 146 (251)
-||.+.+|++|||.||+..+...+ ....++..+++.++|+.+||.+.++++.++||+|||+|+.||||
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArA 163 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARA 163 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHH
Confidence 999999999999999998864321 11245667889999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhC--CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
|+.+|++||||||.+||.+.....+.++|+++++ |.||++|.|||..+..+||||+||+.|+++++|+|+++.+.
T Consensus 164 La~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~d 240 (250)
T COG0411 164 LATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN 240 (250)
T ss_pred HhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcC
Confidence 9999999999999999999999999999999963 69999999999999999999999999999999999987653
No 44
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.8e-57 Score=391.49 Aligned_cols=217 Identities=28% Similarity=0.440 Sum_probs=194.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hHH-hhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTT-IRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~-~~~~i~~ 78 (251)
++++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ... .++.++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGG-LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECC-EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 579999999964 6799999999999999999999999999999999999999999999999988542 222 3467999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCC----------ChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQV----------PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~----------~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
+||++.+++.+||+||+.+....... ......+++.++++.+++.+..++++.+|||||||||+|||||+
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 159 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA 159 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999999999999999887543321 12334557889999999998899999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
.+|+++||||||++||+.++..++++|++++ +|+|||++|||++++..+||++++|++|+++..|+++.+
T Consensus 160 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 160 TDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999986 689999999999999999999999999999999987655
No 45
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.1e-57 Score=390.18 Aligned_cols=217 Identities=33% Similarity=0.533 Sum_probs=195.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHH-hhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTT-IRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~-~~~~i~~ 78 (251)
++++|++++|+ ++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. .... .++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 57999999996 4679999999999999999999999999999999999999999999999998753 2222 3467999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
+||++.+++.+|++||+.+....++........++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 159 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999999999999886554444444445678899999999998999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 159 PTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
||+|||+.+++.++++|+++. ++.|||++|||++++..+||++++|++|+++..|+++.+
T Consensus 160 Pt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 160 PFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999999999985 589999999999999999999999999999999987654
No 46
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-57 Score=393.11 Aligned_cols=217 Identities=24% Similarity=0.394 Sum_probs=193.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..++.++|+|
T Consensus 3 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~i~~v~ 80 (239)
T cd03296 3 IEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP-VQERNVGFVF 80 (239)
T ss_pred EEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-ccccceEEEe
Confidence 478999999964 78999999999999999999999999999999999999999999999999875321 2246799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQV----PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
|++.+++.+||.||+.+.....+. ...+..+++.++++.+++.+..++++.+||+|||||++|||||+.+|++|||
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 160 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLL 160 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999889999999886544322 2333445688999999999888999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
||||+|||+.+++.++++|.+++ + |+|||++|||++++..+||++++|++|+++..|+++.+.
T Consensus 161 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 161 DEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999999999999999984 3 899999999999999999999999999999999887653
No 47
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.8e-57 Score=385.82 Aligned_cols=211 Identities=30% Similarity=0.460 Sum_probs=191.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..+++++|+|
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~-~~~~~i~~~~ 78 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP-PKDRDIAMVF 78 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-cccceEEEEe
Confidence 689999999964 68999999999999999999999999999999999999999999999999875321 1246799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+|++||+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt 158 (213)
T cd03301 79 QNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL 158 (213)
T ss_pred cChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999988999999988765544444555667889999999998899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
+|||+.+++.++++|+++. + |.|||++|||++++..+||++++|++|++++.|
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 159 SNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999984 3 899999999999999999999999999998765
No 48
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-57 Score=391.95 Aligned_cols=219 Identities=28% Similarity=0.444 Sum_probs=193.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC----hHHhhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD----MTTIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~~i 76 (251)
++++|++++|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ....++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 57999999996326799999999999999999999999999999999999999999999999987532 23456789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHh--------cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQL--------KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
+|+||++.+++.+||.||+.+.... .+.......+++.++++.+++.+..++++.+|||||||||+|||||+
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999989999999875321 11122334457889999999998889999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
.+|++|||||||+|||+.++..++++|+++. + |+|||++|||++++..+||++++|++|+++..|+++++.
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 9999999999999999999999999999984 4 899999999999999999999999999999999887653
No 49
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.4e-57 Score=387.85 Aligned_cols=208 Identities=27% Similarity=0.454 Sum_probs=185.9
Q ss_pred CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh----HH-h
Q psy7367 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM----TT-I 72 (251)
Q Consensus 1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~----~~-~ 72 (251)
|+++|++++|+++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... .. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 6899999999632 57999999999999999999999999999999999999999999999999875321 11 3
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
++.++|+||++.+|+.+||+||+.+....++.......+++.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence 46899999999999999999999987655544444445678899999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i 209 (251)
+|||||||+|||+.+++.+.++|+++. .|+|||++||+++++. +||++++|++|++
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999984 3899999999999997 9999999999974
No 50
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-57 Score=398.84 Aligned_cols=218 Identities=24% Similarity=0.387 Sum_probs=195.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
|+++|++++|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.|+|+
T Consensus 5 l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 84 (274)
T PRK13647 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLV 84 (274)
T ss_pred EEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEE
Confidence 4789999999534679999999999999999999999999999999999999999999999999854 334556789999
Q ss_pred ccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 80 PQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 80 ~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
||++. .++.+||.||+.|.....+.......+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 85 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE 164 (274)
T PRK13647 85 FQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDE 164 (274)
T ss_pred ecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99973 34567999999986554445555556678999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 159 PTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
||++||+.++..++++|++++ +|.|||++|||++++.++|||+++|++|++++.|+++.+
T Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 165 PMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999985 589999999999999999999999999999999998654
No 51
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.8e-57 Score=413.90 Aligned_cols=211 Identities=27% Similarity=0.427 Sum_probs=194.2
Q ss_pred EEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHh----hcceEEEccC
Q psy7367 8 KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTI----RRSLGVCPQY 82 (251)
Q Consensus 8 ~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~----~~~i~~v~q~ 82 (251)
|+|+ ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.. ....+ ++.|+|+||+
T Consensus 1 ~~~~-~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 1 KKTG-GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred CccC-CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 4675 4779999999999999999999999999999999999999999999999999864 33333 6789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy7367 83 NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162 (251)
Q Consensus 83 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~g 162 (251)
+.+|+++||+||+.|.....+.+..+..+++.++++.++|..+.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 99999999999999987776666666677899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 163 VDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 163 LD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||.+++.+.+.+.+++ + ++|||++|||++++.++||||++|++|+++..|+++++.
T Consensus 160 LD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 160 LDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999984 4 899999999999999999999999999999999987653
No 52
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-57 Score=386.84 Aligned_cols=211 Identities=27% Similarity=0.450 Sum_probs=191.0
Q ss_pred CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~ 77 (251)
++++|++++|++. +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.. .++.++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~----~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----PGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc----ccCcEE
Confidence 5799999999631 579999999999999999999999999999999999999999999999998742 356799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
|+||++.+++.+|++||+.+....++.......+++.++++.+++.+..++++.+||||||||++|||||+.+|+++|||
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD 156 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 99999999988999999998765554444445567889999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEEEEee--CCEEEeecCH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRIAIIA--AGKLQCCGSS 215 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i~~l~--~G~i~~~g~~ 215 (251)
|||+|||+.++..++++|+++ ++ |.|||++||+++++..+||++++|+ +|++++.++.
T Consensus 157 EPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 157 EPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999998 34 8999999999999999999999999 7999887754
No 53
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-57 Score=388.89 Aligned_cols=217 Identities=26% Similarity=0.407 Sum_probs=195.4
Q ss_pred CEEEeEEEEeCCCc----ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h---HHh
Q psy7367 1 MAIQNLSKRFPNGK----LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M---TTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~----~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~---~~~ 72 (251)
++++|++++|++ + ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... . ...
T Consensus 2 i~~~~l~~~~~~-~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 2 IELKNVSKVFGD-TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred eEEecceEEccC-CCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 578999999964 4 799999999999999999999999999999999999999999999999988532 1 234
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
++.++|+||++.+|+.+|++||+.+....++.......+.+.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 67899999999999989999999886554444444445678899999999998999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
++||||||+|||+.++..++++|++++ + |+|||++||+++++..+||++++|++|++++.|+++.+
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred EEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999984 4 89999999999999999999999999999999987654
No 54
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-57 Score=383.93 Aligned_cols=209 Identities=30% Similarity=0.497 Sum_probs=190.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|+ ++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ..++.++|+|
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~i~~~~ 76 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI---AARNRIGYLP 76 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH---HHHccEEEec
Confidence 68999999996 4779999999999999999999999999999999999999999999999987642 3467899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+|++||+.++...++.......+++.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||
T Consensus 77 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~ 156 (210)
T cd03269 77 EERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156 (210)
T ss_pred cCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99999999999999988765555444455667889999999998889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
+|||+.+++.++++|++++ ++.|||++||+++++..+||++++|++|++++.|
T Consensus 157 ~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 157 SGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999985 5899999999999999999999999999998653
No 55
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-57 Score=399.75 Aligned_cols=218 Identities=28% Similarity=0.463 Sum_probs=195.1
Q ss_pred CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC---hHHhh
Q psy7367 1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD---MTTIR 73 (251)
Q Consensus 1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~ 73 (251)
|+++||+++|++. +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ....+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 5789999999632 3699999999999999999999999999999999999999999999999998542 23567
Q ss_pred cceEEEccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC--cccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367 74 RSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP--HKRTSLANTLSGGMQRKLSVAMAFIGG 150 (251)
Q Consensus 74 ~~i~~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~kqrv~ia~al~~~ 150 (251)
++|||+||++. .+..+||+||+.++....+...++..+++.++++.+||. +..++++.+||||||||++|||||+.+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~ 162 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAME 162 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcC
Confidence 89999999973 233579999999876655666666667889999999997 678999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 151 SRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 151 p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|++|||||||+|||+.++..++++|++++ + |.|||++|||++++..+|||+++|++|++++.|+++++
T Consensus 163 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 163 PKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999984 4 89999999999999999999999999999999998765
No 56
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.6e-57 Score=387.75 Aligned_cols=214 Identities=26% Similarity=0.412 Sum_probs=190.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-----CCCeeEEEEcceeCCC-C--hHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML-----PVSSGTAKIYNHDIRT-D--MTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~-----~p~~G~i~~~g~~~~~-~--~~~~ 72 (251)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. . ...+
T Consensus 1 i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGD-KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 689999999964 68999999999999999999999999999999999999 9999999999998753 2 3345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHcCCCcccCCC--CCcCChhHHHHHHHHHHHcc
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK-DLAQLEISNMIVDLGIPHKRTSL--ANTLSGGMQRKLSVAMAFIG 149 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~kqrv~ia~al~~ 149 (251)
+++++|+||++.++ .+||+||+.+.....+... ....+++.++++.+++.+..+++ +.+||||||||++|||||+.
T Consensus 80 ~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 80 RRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred HhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence 67899999999888 7899999988765443322 22456788999999998877766 59999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367 150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 216 (251)
Q Consensus 150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 216 (251)
+|++|||||||+|||+.+++.++++|+++++..|||++|||++++..+||++++|++|++++.|+++
T Consensus 159 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 159 EPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcc
Confidence 9999999999999999999999999999854499999999999999999999999999999988764
No 57
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.5e-57 Score=383.52 Aligned_cols=209 Identities=29% Similarity=0.484 Sum_probs=188.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC----hHHhhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD----MTTIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~~i 76 (251)
++++|++++|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...+++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 57999999995435799999999999999999999999999999999999999999999999988532 12356789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
+|+||++.+++.+|+.||+.++....+...+...+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 160 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999876554444444556788999999999888999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i 209 (251)
||||++||+.+++.+.+.|++++ +|.|||++||+++++..+||++++|++|++
T Consensus 161 DEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 161 DEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999985 589999999999999999999999999974
No 58
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-57 Score=389.31 Aligned_cols=219 Identities=32% Similarity=0.514 Sum_probs=196.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|++++|++.+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 5799999999632579999999999999999999999999999999999999999999999998753 334456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc--ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH--KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
||++.+++.+|++||+.++....+.......+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||||
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 160 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD 160 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 999999998999999988765544444445567889999999986 789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||+|||+.++..+.++|++++ + |+|||++||+++++..+||++++|++|+++..|+++.+.
T Consensus 161 EPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 161 EPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999984 4 899999999999999999999999999999999877653
No 59
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.6e-57 Score=382.93 Aligned_cols=207 Identities=28% Similarity=0.531 Sum_probs=188.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|+ ++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..+++.++|+|
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~ 78 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRRIGALI 78 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HHHHhhEEEec
Confidence 68999999996 47899999999999999999999999999999999999999999999999987533 34567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+||.||+.++...++.. .+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||
T Consensus 79 q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 154 (208)
T cd03268 79 EAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154 (208)
T ss_pred CCCccCccCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 9999999999999998876544321 346788999999999899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
+|||+.+++.++++|++++ +|.|||++|||++++..+||++++|++|++++.|
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 155 NGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999985 5899999999999999999999999999998654
No 60
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=4.4e-57 Score=383.76 Aligned_cols=208 Identities=28% Similarity=0.483 Sum_probs=187.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC----hHHhhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD----MTTIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~~i 76 (251)
++++|++++|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ...+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 57899999994336799999999999999999999999999999999999999999999999988531 12356789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
+|+||++.+++.+|+.||+.+.....+.......+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllL 161 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLA 161 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 99999999998899999999876554444444556788999999999888999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGK 208 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~ 208 (251)
||||+|||+.++..+.++|++++ +|.|||++||+++++..+||++++|++|+
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 162 DEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999985 58999999999999999999999999885
No 61
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.2e-56 Score=386.86 Aligned_cols=219 Identities=26% Similarity=0.455 Sum_probs=195.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.......++.++|+|
T Consensus 2 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 2 LEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 57899999996 47899999999999999999999999999999999999999999999999987543223346899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+|++||+.+....++.......+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 160 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT 160 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99998888999999988765544444445567889999999998899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 161 SGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+|||+.+++.++++|++++ +|.|||++||+++++.. ||++++|++|++++.++++.+...
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 161 VGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999985 48999999999999975 999999999999999998766543
No 62
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=6.4e-57 Score=415.02 Aligned_cols=217 Identities=22% Similarity=0.375 Sum_probs=196.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.. ...++++++||+
T Consensus 4 L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v 82 (402)
T PRK09536 4 IDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82 (402)
T ss_pred EEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence 57899999996 4789999999999999999999999999999999999999999999999999864 445667889999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLK----QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
+|++.+++.+||+||+.++...+ ........++++++++.+++.+..++++.+||||||||++|||||+++|++||
T Consensus 83 ~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLL 162 (402)
T PRK09536 83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLL 162 (402)
T ss_pred ccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999988999999998854211 11123445678999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|||||+|||+.++..++++|+++. +|.|||++|||++++.++|||+++|++|+++..|+++++
T Consensus 163 LDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 163 LDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999986 589999999999999999999999999999999998753
No 63
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-56 Score=401.19 Aligned_cols=218 Identities=27% Similarity=0.413 Sum_probs=194.5
Q ss_pred CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---------
Q psy7367 1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT--------- 67 (251)
Q Consensus 1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--------- 67 (251)
|+++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 5789999999632 259999999999999999999999999999999999999999999999876521
Q ss_pred ----------------ChHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCC
Q psy7367 68 ----------------DMTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTS 128 (251)
Q Consensus 68 ----------------~~~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~ 128 (251)
....+++.|||+||++ .++ ..||+||+.|+....+.+.++..+++.++++.+||. +..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 1235578899999986 444 579999999876655666666777899999999997 78899
Q ss_pred CCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367 129 LANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAG 207 (251)
Q Consensus 129 ~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G 207 (251)
++.+|||||||||+||+||+.+|++|||||||++||+.++..++++|++++ +|.|||++|||++++.++|||+++|++|
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G 241 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDG 241 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999999985 5999999999999999999999999999
Q ss_pred EEEeecCHHHHH
Q psy7367 208 KLQCCGSSVFLK 219 (251)
Q Consensus 208 ~i~~~g~~~~~~ 219 (251)
++++.|+++++.
T Consensus 242 ~i~~~g~~~~~~ 253 (305)
T PRK13651 242 KIIKDGDTYDIL 253 (305)
T ss_pred EEEEECCHHHHh
Confidence 999999987653
No 64
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-56 Score=398.56 Aligned_cols=217 Identities=29% Similarity=0.480 Sum_probs=194.1
Q ss_pred CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----ChHH
Q psy7367 1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----DMTT 71 (251)
Q Consensus 1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----~~~~ 71 (251)
++++|++++|++. +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 5789999999632 469999999999999999999999999999999999999999999999998842 2335
Q ss_pred hhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 72 IRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 72 ~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
.++.|||+||++ .++ ..||+||+.|+....+....+..+++.++++.++|. +..++++.+|||||||||+|||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 567899999987 455 479999999876555555666667789999999997 6779999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
.+|++|||||||+|||+.++..++++|+++. + |.|||++|||++++.++|||+++|++|++++.|+++++
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 233 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999984 4 89999999999999999999999999999999998765
No 65
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=9.6e-57 Score=383.50 Aligned_cols=215 Identities=28% Similarity=0.484 Sum_probs=191.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHH-hhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTT-IRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~-~~~~i~~ 78 (251)
|+++|++++|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. .... .++.++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGK-SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCC-eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 689999999964 679999999999999999999999999999999999999999999999998754 2222 3567999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-CCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
+||++.+++.+|++||+.+...... ..+...++.++++.+ ++.+..++++.+||||||||++|||||+.+|++||||
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 157 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLD 157 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 9999999999999999988765433 223345677888888 5888889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|||+|||+.++..++++|++++ ++.|||++|||++++..+||++++|++|+++..|+++.+
T Consensus 158 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 158 EPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 9999999999999999999986 589999999999999999999999999999998887654
No 66
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.8e-56 Score=386.55 Aligned_cols=218 Identities=23% Similarity=0.426 Sum_probs=195.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~~~i~ 77 (251)
++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.++
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFGP-TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEECC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 578999999964 679999999999999999999999999999999999999999999999998753 1234567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQ-LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
|+||++.+++.+||+||+.+... ..+....+..+++.++++.+++.+..++++.+||+|||||++|||||+.+|+++||
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 160 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999988999999987542 23334444556788999999999888999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
||||+|||+.++..++++|++++ +|+|||++||+++++..+||++++|++|++++.|++.++.
T Consensus 161 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999985 5899999999999999999999999999999999877653
No 67
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.6e-56 Score=387.30 Aligned_cols=217 Identities=27% Similarity=0.403 Sum_probs=194.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----eeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-----SGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~---~~~~~ 72 (251)
++++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ....+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGE-KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECC-eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 579999999964 67999999999999999999999999999999999999998 9999999998753 23345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+++ +|++||+.+.....+ ....+..+++.++++.+++. +..++++.+||||||||++|||||
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 678999999999988 999999988655443 23344556788999999998 778899999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|+++||||||+|||+.++..++++|++++++.|||++||+++++..+||++++|++|+++..|+++++.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999865699999999999999999999999999999999887653
No 68
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.6e-56 Score=382.76 Aligned_cols=211 Identities=24% Similarity=0.389 Sum_probs=189.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch---HHhhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM---TTIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~---~~~~~~i 76 (251)
|+++|++++|++++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .. ..+++.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 5789999999323679999999999999999999999999999999999999999999999998753 11 2356789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
+|+||++.+++.+|+.||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLA 161 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999888899999998876554444444556788999999999888999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEe
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQC 211 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~ 211 (251)
||||++||+.+++.++++|.+++ ++.|||++|||++++..+||++++|++|+++.
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 162 DEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999985 58999999999999999999999999999863
No 69
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-56 Score=396.27 Aligned_cols=218 Identities=25% Similarity=0.444 Sum_probs=195.1
Q ss_pred CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----ChHH
Q psy7367 1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----DMTT 71 (251)
Q Consensus 1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----~~~~ 71 (251)
|+++|++++|+.+ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.. ....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 5799999999632 259999999999999999999999999999999999999999999999999742 2235
Q ss_pred hhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 72 IRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 72 ~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
.++.+||+||++ .+|+ .||.||+.|+....+.+..+..+++.++++.++|. ...++++.+||||||||++|||||+
T Consensus 82 ~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~ 160 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA 160 (288)
T ss_pred HHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence 678899999987 5665 69999999876655555666667889999999996 5778999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
.+|++|||||||+|||+.++..+.++|++++ +|.|||++|||++++..+||||++|++|++++.|+++++.
T Consensus 161 ~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 232 (288)
T PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232 (288)
T ss_pred hCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999986 5899999999999999999999999999999999987653
No 70
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-56 Score=395.76 Aligned_cols=218 Identities=26% Similarity=0.426 Sum_probs=193.7
Q ss_pred CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----ChHH
Q psy7367 1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----DMTT 71 (251)
Q Consensus 1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----~~~~ 71 (251)
++++|++++|++. +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 4789999999632 469999999999999999999999999999999999999999999999998742 1234
Q ss_pred hhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 72 IRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 72 ~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
.++.|+|+||++ .++ .+||.||+.+....++...++..+++.++++.++|. ...++++.+||||||||++|||||+
T Consensus 83 ~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~ 161 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA 161 (287)
T ss_pred HHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 567899999997 355 589999998865544445555566789999999997 6889999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
.+|++|||||||+|||+.++..+.++|++++ +|.|||++|||++++..+||++++|++|+++..|+++.+.
T Consensus 162 ~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999985 5899999999999999999999999999999999987653
No 71
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2e-56 Score=403.53 Aligned_cols=219 Identities=20% Similarity=0.338 Sum_probs=195.6
Q ss_pred CEEEeEEEEeCC------------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC
Q psy7367 1 MAIQNLSKRFPN------------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD 68 (251)
Q Consensus 1 l~i~~l~~~y~~------------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~ 68 (251)
|+++||+++|+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++...
T Consensus 9 l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~ 88 (331)
T PRK15079 9 LEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGM 88 (331)
T ss_pred EEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcC
Confidence 579999999952 14699999999999999999999999999999999999999999999999998542
Q ss_pred ----hHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHH
Q psy7367 69 ----MTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLK--QVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQR 139 (251)
Q Consensus 69 ----~~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kq 139 (251)
...++++|+|+||++ .+++.+|+.||+.+....+ +....+..+++.++++.+++. ...++++.+|||||+|
T Consensus 89 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~Q 168 (331)
T PRK15079 89 KDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQ 168 (331)
T ss_pred CHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHH
Confidence 123567899999998 6888899999998876543 345556667889999999995 5779999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367 140 KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 217 (251)
Q Consensus 140 rv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 217 (251)
||+|||||+.+|++||+||||++||+.++..++++|++++ + |.|||++|||++++.++|||+++|++|++++.|++++
T Consensus 169 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~ 248 (331)
T PRK15079 169 RIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDE 248 (331)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999985 3 8999999999999999999999999999999999876
Q ss_pred HH
Q psy7367 218 LK 219 (251)
Q Consensus 218 ~~ 219 (251)
+.
T Consensus 249 i~ 250 (331)
T PRK15079 249 VY 250 (331)
T ss_pred HH
Confidence 54
No 72
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-56 Score=394.77 Aligned_cols=218 Identities=26% Similarity=0.412 Sum_probs=195.8
Q ss_pred CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~ 77 (251)
|+++|++++|++ .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....++++++
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13650 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIG 84 (279)
T ss_pred EEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhce
Confidence 578999999963 2459999999999999999999999999999999999999999999999999854 3345677899
Q ss_pred EEccCC-CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 78 VCPQYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 78 ~v~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
|+||++ .+++.+||+||+.+.....+...++..+++.++++.++|.+..++++.+||||||||++|||||+.+|++|||
T Consensus 85 ~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlL 164 (279)
T PRK13650 85 MVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIIL 164 (279)
T ss_pred EEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999998 4667789999999876555555666667889999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
||||+|||+.++..++++|++++ + |+|||++|||++++. .|||+++|++|+++..|+++.+.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 165 DEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999985 4 899999999999995 79999999999999999987653
No 73
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.3e-56 Score=386.99 Aligned_cols=218 Identities=26% Similarity=0.409 Sum_probs=194.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC---------hHH
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD---------MTT 71 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~---------~~~ 71 (251)
++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 4 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 4 IEVKNLVKKFHG-QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred EEEeceEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 578999999964 6799999999999999999999999999999999999999999999999987421 134
Q ss_pred hhcceEEEccCCCCCCCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367 72 IRRSLGVCPQYNALFDKLTVEEHMWFYSQ-LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGG 150 (251)
Q Consensus 72 ~~~~i~~v~q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~ 150 (251)
+++.++|+||++.+++.+|+.||+.++.. ..+.......+++.++++.+++.+..++++.+||||||||++|||||+.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~ 162 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence 56789999999999988999999987543 23333444556788999999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 151 SRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 151 p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|++|||||||+|||+.+++.++++|.++. +|.|||++|||++++..+||++++|++|+++..|+++++.
T Consensus 163 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999985 4899999999999999999999999999999999887653
No 74
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=7.9e-57 Score=389.16 Aligned_cols=218 Identities=28% Similarity=0.431 Sum_probs=192.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC----hHHhhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD----MTTIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~~i 76 (251)
++++|++++|+.++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 57899999996236799999999999999999999999999999999999999999999999987531 12356789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHh--------cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQL--------KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
+|+||++.+++.+||.||+.+.... .+.......+++.++++.+++.+..++++.+||||||||++|||||+
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 161 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALA 161 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999764211 11112334567889999999998889999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
.+|++|||||||+|||+.+++.+.++|+++. + |+|||++||+++++.++||++++|++|+++..|+++.+
T Consensus 162 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 162 QQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 9999999999999999999999999999984 4 89999999999999999999999999999999988655
No 75
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-57 Score=396.21 Aligned_cols=219 Identities=27% Similarity=0.428 Sum_probs=203.6
Q ss_pred CEEEeEEEEeCCCc-----------------------ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeE
Q psy7367 1 MAIQNLSKRFPNGK-----------------------LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57 (251)
Q Consensus 1 l~i~~l~~~y~~~~-----------------------~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~ 57 (251)
++++|++|-||.+. .-++|+||+|+.|||+.|+|-||||||||+|++++|++|++|+
T Consensus 5 i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ 84 (386)
T COG4175 5 IEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGE 84 (386)
T ss_pred EEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCce
Confidence 47889999996421 2578999999999999999999999999999999999999999
Q ss_pred EEEcceeCCC-ChH---Hh-hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCc
Q psy7367 58 AKIYNHDIRT-DMT---TI-RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANT 132 (251)
Q Consensus 58 i~~~g~~~~~-~~~---~~-~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 132 (251)
|.++|+++.. +.. ++ |+++++|||.+.|+|+.||.||+.|++++.+.++++.++++.++|+.+||..+.+++|++
T Consensus 85 ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~e 164 (386)
T COG4175 85 ILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNE 164 (386)
T ss_pred EEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCccc
Confidence 9999999864 222 33 468999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210 (251)
Q Consensus 133 LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~ 210 (251)
|||||||||.|||||+.+|++||+|||+|+|||--+.++-+.|.+++ + ++|||++|||++++.++.|||.+|++|+|+
T Consensus 165 LSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~iv 244 (386)
T COG4175 165 LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIV 244 (386)
T ss_pred ccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEE
Confidence 99999999999999999999999999999999999999999999985 4 899999999999999999999999999999
Q ss_pred eecCHHHHH
Q psy7367 211 CCGSSVFLK 219 (251)
Q Consensus 211 ~~g~~~~~~ 219 (251)
..|+|+++-
T Consensus 245 Q~Gtp~eIl 253 (386)
T COG4175 245 QVGTPEEIL 253 (386)
T ss_pred EeCCHHHHH
Confidence 999998764
No 76
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2e-56 Score=379.22 Aligned_cols=208 Identities=25% Similarity=0.432 Sum_probs=187.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~~~i~ 77 (251)
++++|++++|++ +.+|+++||++++|++++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....+++.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 579999999964 689999999999999999999999999999999999999999999999998742 2234567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQ-LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
|+||++.+++.+|+.||+.++.. .++....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 159 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF 159 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999998999999988643 33334444556788999999999888999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i 209 (251)
||||+|||+.+++.+.++|++++ .|.|||++||+++++.++||++++|++|++
T Consensus 160 DEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 160 DEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999986 489999999999999999999999999974
No 77
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-56 Score=383.04 Aligned_cols=213 Identities=23% Similarity=0.382 Sum_probs=188.9
Q ss_pred CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hH---Hh-
Q psy7367 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MT---TI- 72 (251)
Q Consensus 1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~---~~- 72 (251)
++++|++++|+++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... .. ..
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELR 85 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHH
Confidence 4789999999632 4699999999999999999999999999999999999999999999999988532 21 22
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
++.++|+||++.+++.+|++||+.+...+.+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus 86 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 165 (233)
T PRK11629 86 NQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPR 165 (233)
T ss_pred hccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 36799999999999999999999986554444444555678899999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~ 214 (251)
+|||||||+|||+.+++.++++|++++ +|.|||++|||++++.. +|++++|++|+++..++
T Consensus 166 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 166 LVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELS 228 (233)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEec
Confidence 999999999999999999999999984 48999999999999987 47999999999998765
No 78
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.1e-56 Score=379.27 Aligned_cols=203 Identities=28% Similarity=0.441 Sum_probs=180.8
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEcc
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQ 81 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q 81 (251)
+++|++++|++++++|+++||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++.. ...+++++|+||
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~i~~~~q 78 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSIGYVMQ 78 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh--HHhhcceEEEec
Confidence 478999999532679999999999999999999999999999999999999999999999998743 345678999999
Q ss_pred CCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 82 YNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 82 ~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
++. .++.+|+.||+.++....+. ..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 154 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELDA----GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcCc----cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 974 23457999999886543321 1246789999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~ 210 (251)
+|||+.+++.+.++|++++ +|.|||++||+++++..+||++++|++|+++
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 155 SGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999984 6899999999999999999999999999874
No 79
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.1e-56 Score=384.62 Aligned_cols=217 Identities=23% Similarity=0.329 Sum_probs=193.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChH-HhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMT-TIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~-~~~~~i~~ 78 (251)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ... ..++.++|
T Consensus 3 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 3 LYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred EEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 578999999964 679999999999999999999999999999999999999999999999998754 222 23457999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLK--------QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGG 150 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~ 150 (251)
+||++.+++.+||+||+.++.... +.......+++.++++.+++.+..++++.+|||||+|||+|||||+.+
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~ 161 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQD 161 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999999999998864321 112233456788999999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 151 SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|++|||||||+|||+.+++.++++|+++.++.|||++||+++++..+||++++|++|++++.|+++++
T Consensus 162 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 162 PKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred CCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 99999999999999999999999999987689999999999999999999999999999999987765
No 80
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.6e-56 Score=379.50 Aligned_cols=207 Identities=30% Similarity=0.511 Sum_probs=183.8
Q ss_pred EEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 2 AIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 2 ~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
+++|++++|++. +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 478999999531 579999999999999999999999999999999999999999999999998753 234556789999
Q ss_pred ccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 80 PQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 80 ~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
||++. .++.+|+.||+.+.....+.......+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 160 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDE 160 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99985 35678999999886554443444445678899999999988899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367 159 PTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGK 208 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~ 208 (251)
||+|||+.+++.+++.|++++ +|.|||++|||++++..+||++++|++|+
T Consensus 161 Pt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 161 PTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999985 58999999999999999999999999884
No 81
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4e-56 Score=391.07 Aligned_cols=218 Identities=22% Similarity=0.353 Sum_probs=194.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h---HHhhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M---TTIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~---~~~~~~i 76 (251)
|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... . ...++.+
T Consensus 8 l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i 86 (269)
T PRK11831 8 VDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRM 86 (269)
T ss_pred EEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcE
Confidence 57899999996 47899999999999999999999999999999999999999999999999987531 1 2345689
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
+|+||++.+++.+|+.||+.+..... .........++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus 87 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 166 (269)
T PRK11831 87 SMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIM 166 (269)
T ss_pred EEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999998864432 23333445568889999999998999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||||+|||+.+++.++++|+++. + |.|||++|||++++..+||++++|++|+++..|+++++.
T Consensus 167 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 167 FDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999984 4 899999999999999999999999999999999887654
No 82
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-56 Score=409.78 Aligned_cols=219 Identities=26% Similarity=0.410 Sum_probs=196.7
Q ss_pred CEEEeEEEEeCCCc-----------------------ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeE
Q psy7367 1 MAIQNLSKRFPNGK-----------------------LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57 (251)
Q Consensus 1 l~i~~l~~~y~~~~-----------------------~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~ 57 (251)
|+++||+|.|+... .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+
T Consensus 5 i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~ 84 (400)
T PRK10070 5 LEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQ 84 (400)
T ss_pred EEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCE
Confidence 57899999996422 1899999999999999999999999999999999999999999
Q ss_pred EEEcceeCCC-ChHH----hhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCc
Q psy7367 58 AKIYNHDIRT-DMTT----IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANT 132 (251)
Q Consensus 58 i~~~g~~~~~-~~~~----~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 132 (251)
|+++|+++.. .... .+++++|+||++.+|+++||+||+.+.....+....+..+++.++++.++|.+..++++.+
T Consensus 85 I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~ 164 (400)
T PRK10070 85 VLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDE 164 (400)
T ss_pred EEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCccc
Confidence 9999999854 2221 2458999999999999999999999987665555555566788999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210 (251)
Q Consensus 133 LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~ 210 (251)
|||||||||+|||||+.+|++|||||||++||+.+++.+.++|.+++ .|+|||++|||++++.++||++++|++|+++
T Consensus 165 LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~ 244 (400)
T PRK10070 165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV 244 (400)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999984 3899999999999999999999999999999
Q ss_pred eecCHHHHH
Q psy7367 211 CCGSSVFLK 219 (251)
Q Consensus 211 ~~g~~~~~~ 219 (251)
..|+++++.
T Consensus 245 ~~g~~~~l~ 253 (400)
T PRK10070 245 QVGTPDEIL 253 (400)
T ss_pred ecCCHHHHH
Confidence 999887653
No 83
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-56 Score=392.53 Aligned_cols=219 Identities=27% Similarity=0.451 Sum_probs=195.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~~~i~ 77 (251)
|+++|++++|++++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.++
T Consensus 6 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig 85 (283)
T PRK13636 6 LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVG 85 (283)
T ss_pred EEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEE
Confidence 5789999999534679999999999999999999999999999999999999999999999999842 2345678899
Q ss_pred EEccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 78 VCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 78 ~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
|+||++. .+...|++||+.+.....+.+..+..+++.++++.++|.+..++++.+||||||||++|||||+.+|++|||
T Consensus 86 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLil 165 (283)
T PRK13636 86 MVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVL 165 (283)
T ss_pred EEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999973 234579999998865544555555566789999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
||||+|||+.++..++++|+++. + |.|||++|||++++..+|||+++|++|++++.|+++++.
T Consensus 166 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 166 DEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999985 4 899999999999999999999999999999999987653
No 84
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-56 Score=392.89 Aligned_cols=217 Identities=26% Similarity=0.457 Sum_probs=194.0
Q ss_pred CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----ChHH
Q psy7367 1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----DMTT 71 (251)
Q Consensus 1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----~~~~ 71 (251)
++++||+++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 5789999999532 369999999999999999999999999999999999999999999999999843 1235
Q ss_pred hhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 72 IRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 72 ~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
++++|||+||++ .+++ .||.||+.+.....+....+..+++.++++.+||. +..++++.+||||||||++|||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 678999999987 4565 59999999876554555556667889999999997 6788999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
.+|++|||||||+|||+.++..+.++|++++ .|.|||++|||++++..+|||+++|++|++++.|++.++
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 233 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999984 389999999999999999999999999999999998764
No 85
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-56 Score=390.84 Aligned_cols=216 Identities=27% Similarity=0.412 Sum_probs=189.7
Q ss_pred EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hHH----hhcceEE
Q psy7367 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTT----IRRSLGV 78 (251)
Q Consensus 4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~----~~~~i~~ 78 (251)
+|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ... .+++++|
T Consensus 28 ~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~ 106 (269)
T cd03294 28 EEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred hhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEE
Confidence 35555554 35689999999999999999999999999999999999999999999999987531 111 2357999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
+||++.+++.+|+.||+.+.....+.......+++.++++.++|.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 107 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDE 186 (269)
T cd03294 107 VFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDE 186 (269)
T ss_pred EecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999999899999999987655444444445678899999999988999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 159 PTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
||+|||+.+++.+.++|+++. + |.|||++|||++++.++||++++|++|+++..|+++++.+
T Consensus 187 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 187 AFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999984 4 8999999999999999999999999999999998876643
No 86
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-55 Score=389.94 Aligned_cols=219 Identities=25% Similarity=0.391 Sum_probs=195.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|++++|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....+++.++|+
T Consensus 4 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 83 (277)
T PRK13652 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLV 83 (277)
T ss_pred EEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEE
Confidence 4789999999534569999999999999999999999999999999999999999999999998854 334567789999
Q ss_pred ccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 80 PQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 80 ~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
||++. .+.+.||.||+.+.....+.......+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 84 ~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDE 163 (277)
T PRK13652 84 FQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDE 163 (277)
T ss_pred ecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99974 33457999999876554445555556678999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 159 PTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
||+|||+.++..++++|++++ + |.|||++||+++++.++|||+++|++|+++..|+++++.
T Consensus 164 Pt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 164 PTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 999999999999999999985 4 899999999999999999999999999999999987663
No 87
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-56 Score=390.25 Aligned_cols=217 Identities=27% Similarity=0.395 Sum_probs=194.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~i~~ 78 (251)
++++|++++|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++... ...+++.++|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 57999999995346799999999999999999999999999999999999999999999999988532 2455678999
Q ss_pred EccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 79 CPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 79 v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
+||++. .+..+|+.||+.+.....+....+..+++.++++.+++.+..++++.+||+|||||++|||||+.+|+++|||
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 161 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD 161 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999985 3556899999988765544555555667889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|||+|||+.++..++++|++++ +|.|||++|||++++. .|||+++|++|++++.|+++.+
T Consensus 162 EPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 162 EVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999986 5999999999999995 6999999999999999998765
No 88
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.3e-55 Score=385.21 Aligned_cols=218 Identities=23% Similarity=0.364 Sum_probs=194.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-------------
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT------------- 67 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~------------- 67 (251)
|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..
T Consensus 6 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 84 (257)
T PRK10619 6 LNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADK 84 (257)
T ss_pred EEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccc
Confidence 57999999996 4789999999999999999999999999999999999999999999999988742
Q ss_pred -ChHHhhcceEEEccCCCCCCCCCHHHHHHHHH-HhcCCChHHHHHHHHHHHHHcCCCccc-CCCCCcCChhHHHHHHHH
Q psy7367 68 -DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIVDLGIPHKR-TSLANTLSGGMQRKLSVA 144 (251)
Q Consensus 68 -~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~kqrv~ia 144 (251)
....++++++|+||++.+++.+|++||+.+.. ...........+++.++++.+++.+.. ++++.+||||||||++||
T Consensus 85 ~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~la 164 (257)
T PRK10619 85 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 164 (257)
T ss_pred hHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 12345678999999999999999999998743 233334445566788999999998764 889999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 145 MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 145 ~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||+.+|++|||||||+|||+.+++.+.++|++++ +|.|||++|||++++..+|||+++|++|++++.|+++.+.
T Consensus 165 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 165 RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 99999999999999999999999999999999986 5999999999999999999999999999999999887653
No 89
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-56 Score=389.01 Aligned_cols=217 Identities=22% Similarity=0.370 Sum_probs=193.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~~~i~ 77 (251)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....+++.++
T Consensus 2 l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQD-EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcCC-cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 579999999964 679999999999999999999999999999999999999999999999998742 2234567899
Q ss_pred EEccCCCC-CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 78 VCPQYNAL-FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 78 ~v~q~~~l-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
|+||++.+ +...|+.+|+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllL 160 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL 160 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999753 34468999998865544444445556788999999999888999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
||||+|||+.++..+.++|++++ +|.|||++|||++++..+||++++|++|++++.|+++.+
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 161 DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999985 589999999999999999999999999999999988655
No 90
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-55 Score=388.80 Aligned_cols=219 Identities=26% Similarity=0.436 Sum_probs=193.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~~~i~ 77 (251)
++++|++++|++.+.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....+++.|+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 5789999999634579999999999999999999999999999999999999999999999998842 1234567899
Q ss_pred EEccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 78 VCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 78 ~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
|+||++. .+..+||.||+.+.....+....+..+++.++++.+++.++.++++.+|||||+||++|||||+.+|+++||
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 161 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVL 161 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999973 333479999998764433444445556788999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
||||+|||+.++..++++|++++ +|.|||++|||++++.++||++++|++|++++.|+++.+.
T Consensus 162 DEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 162 DEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999985 5899999999999999999999999999999999987653
No 91
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=7.7e-56 Score=377.87 Aligned_cols=209 Identities=23% Similarity=0.431 Sum_probs=184.7
Q ss_pred CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChH---Hhh
Q psy7367 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMT---TIR 73 (251)
Q Consensus 1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~---~~~ 73 (251)
|+++|++++|+++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ... .++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 5789999999532 469999999999999999999999999999999999999999999999998753 211 223
Q ss_pred -cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 74 -RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 74 -~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
+.++|+||++.+++.+|++||+.+....+.....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS 161 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 6799999999999889999999886544433334445678899999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~ 210 (251)
+|||||||+|||+.++..+.++|+++. + +.|||++|||++++.. ||++++|++|+++
T Consensus 162 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 162 LVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999984 3 8999999999999865 8999999999975
No 92
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-56 Score=382.98 Aligned_cols=217 Identities=29% Similarity=0.527 Sum_probs=194.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch-HHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM-TTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~-~~~~~~i~~ 78 (251)
++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. .. ...++.++|
T Consensus 4 l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 4 LTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred EEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 57899999996 4789999999999999999999999999999999999999999999999998853 22 234578999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
+||++.+++.+|+.||+.++.... .....+...++.++++.+++.+..++++.+||||||||++|||||+.+|++||||
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD 162 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999899999998765433 2233344567889999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|||++||+.++..+.+++.+++ +|.|||++||+++++..+||++++|++|++++.|+++++
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 163 EPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 9999999999999999999985 589999999999999999999999999999999988765
No 93
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-55 Score=381.68 Aligned_cols=217 Identities=21% Similarity=0.343 Sum_probs=193.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-------ChHHhh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-------DMTTIR 73 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-------~~~~~~ 73 (251)
++++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .....+
T Consensus 3 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 3 IQLNGINCFYGA-HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEeeEEEECC-eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 478999999964 789999999999999999999999999999999999999999999999998631 123456
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHH-HHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 74 RSLGVCPQYNALFDKLTVEEHMWFY-SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 74 ~~i~~v~q~~~l~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
++++|+||++.+++.+|+.||+.+. ....+....+..+++.++++.+|+.+..++++.+||||||||++|||||+.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 7899999999999999999999753 333344444445678899999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
++||||||+|||+.++..++++|++++ +|.|||++|||++++..+||++++|++|+++..|+++.+
T Consensus 162 llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 162 VLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999999986 489999999999999999999999999999999987654
No 94
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-55 Score=397.01 Aligned_cols=217 Identities=24% Similarity=0.405 Sum_probs=193.3
Q ss_pred CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--------
Q psy7367 1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-------- 68 (251)
Q Consensus 1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-------- 68 (251)
|+++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...
T Consensus 22 l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 101 (320)
T PRK13631 22 LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELIT 101 (320)
T ss_pred EEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccc
Confidence 5789999999632 3599999999999999999999999999999999999999999999999887431
Q ss_pred ---------hHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChh
Q psy7367 69 ---------MTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGG 136 (251)
Q Consensus 69 ---------~~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG 136 (251)
...+++.|+|+||++ .+|+ .||+||+.++....+.+..+..+++.++++.++|. ...++++.+||||
T Consensus 102 ~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG 180 (320)
T PRK13631 102 NPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGG 180 (320)
T ss_pred cccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHH
Confidence 235678899999997 5665 59999998875444445555666788999999997 6789999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCH
Q psy7367 137 MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215 (251)
Q Consensus 137 ~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~ 215 (251)
||||++|||||+.+|++|||||||+|||+.++..++++|++++ +|.|||++|||++++.++|||+++|++|++++.|++
T Consensus 181 qkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~ 260 (320)
T PRK13631 181 QKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTP 260 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999985 589999999999999999999999999999999998
Q ss_pred HHH
Q psy7367 216 VFL 218 (251)
Q Consensus 216 ~~~ 218 (251)
+++
T Consensus 261 ~~~ 263 (320)
T PRK13631 261 YEI 263 (320)
T ss_pred HHH
Confidence 754
No 95
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-55 Score=385.88 Aligned_cols=217 Identities=25% Similarity=0.382 Sum_probs=193.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
|+++|++++|++ +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++.. ....+++.++|+
T Consensus 3 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 3 LEARNLSVRLGG-RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred EEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 578999999964 679999999999999999999999999999999999999999999999998753 233456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc------cCCCE
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI------GGSRT 153 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~------~~p~l 153 (251)
||++.+++.+||+||+.+.............+++.++++.+++.+..++++.+||||||||++|||||+ .+|++
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~l 161 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW 161 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 999988888999999988643322222334456889999999998889999999999999999999999 59999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 154 VILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 154 lllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|||||||+|||+.+++.+.++|+++. +|.|||++|||++++..+||++++|++|+++..|+++++
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 162 LLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999985 489999999999999999999999999999999987654
No 96
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-55 Score=384.52 Aligned_cols=217 Identities=24% Similarity=0.388 Sum_probs=192.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCCC---hHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRTD---MTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~~---~~~~ 72 (251)
|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ...+
T Consensus 13 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 91 (258)
T PRK14268 13 IKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVEL 91 (258)
T ss_pred EEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHH
Confidence 47899999996 46799999999999999999999999999999999999975 899999999987431 2345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
++.++|+||++.+++ +|++||+.+.....+.......+++.++++.+++. +..++++.+|||||||||+|||||+
T Consensus 92 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 170 (258)
T PRK14268 92 RKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA 170 (258)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 678999999998888 89999999876544444444455688899999983 4568899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
.+|++|||||||+|||+.++..++++|++++++.|||++|||++++.++|||+++|++|++++.|+++++.
T Consensus 171 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 171 VKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999866899999999999999999999999999999999987663
No 97
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=9.7e-56 Score=378.53 Aligned_cols=213 Identities=26% Similarity=0.424 Sum_probs=184.7
Q ss_pred CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh----HHhh
Q psy7367 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM----TTIR 73 (251)
Q Consensus 1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~ 73 (251)
++++|++++|++. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 5789999999642 17999999999999999999999999999999999999999999999999885422 3456
Q ss_pred cceEEEccCC--CCCCCCCHHHHHHHHHHhcCCC-hHHHHHH-HHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 74 RSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVP-KDLAQLE-ISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 74 ~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~-~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
+.++|+||++ .+++.+||+||+.+.....+.. .....+. +.++++.+++. ...++++.+||||||||++|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~ 161 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALA 161 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHh
Confidence 7899999998 5677899999998865443322 1222222 35889999995 6788999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
.+|++|||||||+|||+.+++.+.++|+++. + |.|||++|||++++..+||++++|++|+++..|
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 162 LNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999985 4 899999999999999999999999999998654
No 98
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-56 Score=373.30 Aligned_cols=219 Identities=26% Similarity=0.437 Sum_probs=196.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~i~~ 78 (251)
++++||+..|+. .++|++|||++++||+++|+||||||||||||+|+|+.+|.+|+|.++|+++... ....|..|+|
T Consensus 4 L~v~~l~~~YG~-~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~ 82 (237)
T COG0410 4 LEVENLSAGYGK-IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAY 82 (237)
T ss_pred eeEEeEeecccc-eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEe
Confidence 589999999975 8899999999999999999999999999999999999999999999999999752 3456789999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-CCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
|||...+|+.|||+|||.++...... +......++++.+.| .|.+..+++.++|||||||.++|||||+.+|++|+||
T Consensus 83 VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLD 161 (237)
T COG0410 83 VPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLD 161 (237)
T ss_pred CcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEec
Confidence 99999999999999999987654332 111122277788888 4788899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
|||.||-|.-.++|.+.+++++ + |.||+++.++...+.+++||.++|.+|+++.+|+.+++...
T Consensus 162 EPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 162 EPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999999996 4 78999999999999999999999999999999998877543
No 99
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-55 Score=389.40 Aligned_cols=218 Identities=27% Similarity=0.429 Sum_probs=195.3
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++ .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.|+|
T Consensus 6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 85 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGM 85 (279)
T ss_pred EEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEE
Confidence 478999999963 3569999999999999999999999999999999999999999999999999854 23345678999
Q ss_pred EccCC-CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 79 CPQYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 79 v~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
+||++ .+++.+||.||+.++....+....+..+++.++++.++|.+..++++.+||||||||++|||||+.+|++||||
T Consensus 86 ~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 165 (279)
T PRK13635 86 VFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILD 165 (279)
T ss_pred EEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99998 36667899999988765555555555677899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||+|||+.++..++++|+++. + |.|||++|||++++.. ||++++|++|++++.|+++.+.
T Consensus 166 EPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 166 EATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999985 4 8999999999999975 9999999999999999887553
No 100
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-55 Score=381.79 Aligned_cols=218 Identities=24% Similarity=0.386 Sum_probs=193.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC-ChHHhhc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT-DMTTIRR 74 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~-~~~~~~~ 74 (251)
++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. ....+++
T Consensus 4 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 4 IEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred EEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 578999999964 6799999999999999999999999999999999999974 79999999998853 3345677
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 75 SLGVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 75 ~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
.|+|+||++.+++.+||.||+.+....... ...+..+++.++++.+++.+ ..++++.+||||||||++|||||+
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 162 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA 162 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 899999999888889999999886543322 23444567889999999853 568899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
.+|+++||||||+|||+.++..+.++|++++++.|||++||+++++..+||++++|++|++++.|+++++.
T Consensus 163 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 163 FQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 99999999999999999999999999999876899999999999999999999999999999999987653
No 101
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-55 Score=384.56 Aligned_cols=210 Identities=24% Similarity=0.410 Sum_probs=189.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... +..++|+|
T Consensus 2 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~v~ 76 (255)
T PRK11248 2 LQISHLYADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP----GAERGVVF 76 (255)
T ss_pred EEEEEEEEEeCC-eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CCcEEEEe
Confidence 579999999964 6799999999999999999999999999999999999999999999999987531 24589999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+||.||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||
T Consensus 77 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 156 (255)
T PRK11248 77 QNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156 (255)
T ss_pred CCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99999988999999988655444444445567899999999998889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhh-h-CCCeEEEEeCCHHHHHhhcCEEEEee--CCEEEeecCH
Q psy7367 161 SGVDPYSRRSIWELLIKY-K-KGRTVILTTHYMDEADLLGDRIAIIA--AGKLQCCGSS 215 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l-~-~g~tiii~tHd~~~~~~~~d~i~~l~--~G~i~~~g~~ 215 (251)
+|||+.++..++++|+++ + .|+|||++|||++++..+||++++|+ +|+++..++.
T Consensus 157 ~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 157 GALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999997 4 48999999999999999999999998 5999987754
No 102
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-55 Score=382.25 Aligned_cols=218 Identities=24% Similarity=0.411 Sum_probs=192.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. ....+
T Consensus 5 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (253)
T PRK14267 5 IETVNLRVYYGS-NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEV 83 (253)
T ss_pred EEEEeEEEEeCC-eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHH
Confidence 578999999964 6799999999999999999999999999999999999987 49999999998851 23345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~a 146 (251)
+++++|+||++.+++.+|+.||+.+.....+. ......+++.++++.+++. ...++++.+||||||||++||||
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 163 (253)
T PRK14267 84 RREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARA 163 (253)
T ss_pred hhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHH
Confidence 67899999999999999999999886544332 2334445688899999984 35688999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|+.+|+++||||||+|||+.+++.+.++|+++.++.|||++||+++++..+||++++|++|++++.|+++++.
T Consensus 164 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 164 LAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999866799999999999999999999999999999999987653
No 103
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-55 Score=374.06 Aligned_cols=209 Identities=22% Similarity=0.402 Sum_probs=184.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++ +. .++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ..++.++|+|
T Consensus 1 i~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~~~~~i~~~~ 76 (211)
T cd03298 1 VRLDKIRFSYGE-QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP-PADRPVSMLF 76 (211)
T ss_pred CEEEeEEEEeCC-Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCC-HhHccEEEEe
Confidence 579999999963 43 3999999999999999999999999999999999999999999999885422 2357899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+|++||+.+............++++.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||
T Consensus 77 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~ 156 (211)
T cd03298 77 QENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPF 156 (211)
T ss_pred cccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999987543211112234457889999999998889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
+|||+.++..++++|++++ + +.|||++||+++++..+|||+++|++|+++..|
T Consensus 157 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 157 AALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999984 3 899999999999999999999999999997653
No 104
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.4e-55 Score=401.92 Aligned_cols=205 Identities=28% Similarity=0.476 Sum_probs=186.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcce----eCCC-Ch---HHhh-cceEEEccCCCC
Q psy7367 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH----DIRT-DM---TTIR-RSLGVCPQYNAL 85 (251)
Q Consensus 15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~----~~~~-~~---~~~~-~~i~~v~q~~~l 85 (251)
.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+ ++.. .. ...| ++|+|+||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5899999999999999999999999999999999999999999999997 3422 11 1223 589999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q psy7367 86 FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165 (251)
Q Consensus 86 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~ 165 (251)
|+++||.||+.++....+.++.+..+++.++++.+||.+..++++.+|||||||||+|||||+.+|++|||||||++||+
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~ 197 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDP 197 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 99999999999987666666666667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 166 YSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 166 ~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
.++..+.+.|.+++ + ++|||++|||++++.++|||+++|++|+++..|+++++.
T Consensus 198 ~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 198 LIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999985 3 899999999999999999999999999999999987663
No 105
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-55 Score=387.43 Aligned_cols=217 Identities=29% Similarity=0.468 Sum_probs=191.9
Q ss_pred CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----ChHH
Q psy7367 1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----DMTT 71 (251)
Q Consensus 1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----~~~~ 71 (251)
|+++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 5789999999632 369999999999999999999999999999999999999999999999998753 1234
Q ss_pred hhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 72 IRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 72 ~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
+++.|+|+||++ .+++ .|++||+.+.....+...++..+++.++++.+++. ...++++.+||||||||++|||||+
T Consensus 83 ~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 567899999997 4555 69999998865544444445556788999999997 4678999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
.+|++|||||||++||+.+++.++++|++++ +|.|||++||+++++..+||++++|++|+++..|+++.+
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999985 489999999999999999999999999999999988765
No 106
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-55 Score=395.30 Aligned_cols=220 Identities=17% Similarity=0.298 Sum_probs=195.7
Q ss_pred CEEEeEEEEeCC---------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC---
Q psy7367 1 MAIQNLSKRFPN---------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--- 68 (251)
Q Consensus 1 l~i~~l~~~y~~---------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--- 68 (251)
|+++||++.|+. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus 6 l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~ 85 (327)
T PRK11308 6 LQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPE 85 (327)
T ss_pred EEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHH
Confidence 579999999952 24699999999999999999999999999999999999999999999999998542
Q ss_pred -hHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHH
Q psy7367 69 -MTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSV 143 (251)
Q Consensus 69 -~~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~i 143 (251)
...++++|+|+||++ .+++.+|+.+++....... +....+..+++.++++.+||. ...++++++|||||||||+|
T Consensus 86 ~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~i 165 (327)
T PRK11308 86 AQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAI 165 (327)
T ss_pred HHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHH
Confidence 124567899999998 5888899999998765543 344555667899999999997 46799999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
||||+.+|++||+||||++||+.++..++++|++++ + |.|||+||||++.+.++|||+++|++|++++.|+.+++..
T Consensus 166 ArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 166 ARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred HHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999999984 3 8999999999999999999999999999999999876643
No 107
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.8e-55 Score=381.01 Aligned_cols=218 Identities=22% Similarity=0.368 Sum_probs=194.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC------------
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD------------ 68 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~------------ 68 (251)
|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGI-LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCC-eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 689999999964 6899999999999999999999999999999999999999999999999987421
Q ss_pred --hHHhhcceEEEccCCCCCCCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHH
Q psy7367 69 --MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ-LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM 145 (251)
Q Consensus 69 --~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~ 145 (251)
...+++.++|+||++.+++.+|+.||+.+... ..+.......+++.++++.+++.+..++.+.+|||||+||++|||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 12456789999999999999999999987532 223334445567889999999998889999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
||+.+|++|||||||+|||+.++..++++|+++. + |.|||++||+++++..+|||+++|++|++++.|+++.+.
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999984 4 899999999999999999999999999999999887653
No 108
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.3e-55 Score=378.73 Aligned_cols=214 Identities=27% Similarity=0.454 Sum_probs=189.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChH-HhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMT-TIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~-~~~~~i~~ 78 (251)
|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ... ..+++++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQ-SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCC-eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 689999999964 689999999999999999999999999999999999999999999999998753 222 23568999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC-CCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG-IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
+||++.+|+.+|+.||+.++...++.. ..+.+.++++.++ +.+..++++.+||||||||++|||||+.+|+++|||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlD 156 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLD 156 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 999999999999999998865543322 1234567788887 577789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|||+|||+.++..+.++|.+++ + +.|||++||+++++..+||++++|++|++++.|+++.+
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 157 EPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999985 3 89999999999999999999999999999999988765
No 109
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=3.1e-55 Score=375.95 Aligned_cols=210 Identities=25% Similarity=0.381 Sum_probs=185.9
Q ss_pred CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hH---Hh-
Q psy7367 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MT---TI- 72 (251)
Q Consensus 1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~---~~- 72 (251)
|+++|++++|+++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .. ..
T Consensus 7 l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 86 (228)
T PRK10584 7 VEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLR 86 (228)
T ss_pred EEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHH
Confidence 5789999999642 2599999999999999999999999999999999999999999999999987532 21 12
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
+++++|+||++.+++.+|+.||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus 87 ~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~ 166 (228)
T PRK10584 87 AKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPD 166 (228)
T ss_pred hheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 35799999999999999999999886544444444556678999999999988899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEe
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQC 211 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~ 211 (251)
+|||||||+|||+.+++.++++|++++ + |.|||++|||++++.. ||++++|++|++++
T Consensus 167 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~ 226 (228)
T PRK10584 167 VLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226 (228)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEe
Confidence 999999999999999999999999984 4 8999999999999865 99999999999875
No 110
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-55 Score=380.30 Aligned_cols=217 Identities=26% Similarity=0.362 Sum_probs=190.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. ....+
T Consensus 7 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 85 (253)
T PRK14242 7 MEARGLSFFYGD-FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVEL 85 (253)
T ss_pred EEEeeeEEEECC-eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHH
Confidence 578999999964 679999999999999999999999999999999999964 689999999998753 22345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+|+ .||+||+.+.....+. ......+++.++++.+++.+ ..++++.+|||||||||+|||||
T Consensus 86 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 164 (253)
T PRK14242 86 RRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL 164 (253)
T ss_pred hhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 678999999998887 5999999887554433 23334567888999999853 46788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|++|||||||+|||+.++..+.++|++++++.|||++|||++++.++||++++|++|+++..|+++.+.
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 165 AVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999876899999999999999999999999999999999887653
No 111
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=7.5e-56 Score=376.14 Aligned_cols=205 Identities=21% Similarity=0.407 Sum_probs=180.3
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEcc
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQ 81 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q 81 (251)
+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..++.++|+||
T Consensus 1 ~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~~~~~i~~v~q 75 (213)
T cd03235 1 EVEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRIGYVPQ 75 (213)
T ss_pred CcccceeEECC-EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----HHHhheEEecc
Confidence 47899999964 67999999999999999999999999999999999999999999999998763 35678999999
Q ss_pred CCCCC--CCCCHHHHHHHHHHhcC----CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 82 YNALF--DKLTVEEHMWFYSQLKQ----VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 82 ~~~l~--~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
++.++ +.+||+||+.+...... .......+++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 76 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 155 (213)
T cd03235 76 RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLL 155 (213)
T ss_pred ccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 98763 34799999987543211 1223345678899999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC 212 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~ 212 (251)
|||||+|||+.+++.+.++|++++ +|.|||++|||++++.++||++++|++| +++.
T Consensus 156 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 156 LDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 999999999999999999999985 6899999999999999999999999886 5444
No 112
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-55 Score=380.93 Aligned_cols=217 Identities=26% Similarity=0.396 Sum_probs=191.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~ 72 (251)
++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++.. ....+
T Consensus 8 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (254)
T PRK14273 8 IETENLNLFYTD-FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILEL 86 (254)
T ss_pred EEEeeeEEEeCC-ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHH
Confidence 578999999964 6799999999999999999999999999999999999987 48999999998742 22345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCC----CcccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGI----PHKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l----~~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.|+|+||++.+++ +||+||+.+.....+. ......+++.++++.+++ .+..++++.+||||||||++|||||
T Consensus 87 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral 165 (254)
T PRK14273 87 RRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL 165 (254)
T ss_pred hhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 778999999998885 8999999887544332 233445678889999987 4557889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|++|||||||+|||+.++..++++|++++++.|||++||+++++..+|||+++|++|+++..|++.++.
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 166 AIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999976899999999999999999999999999999999987664
No 113
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-55 Score=381.56 Aligned_cols=217 Identities=27% Similarity=0.397 Sum_probs=191.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHH-hhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTT-IRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~-~~~~i~~ 78 (251)
++++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .... .+..++|
T Consensus 6 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (255)
T PRK11300 6 LSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR 84 (255)
T ss_pred EEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEE
Confidence 57899999996 4789999999999999999999999999999999999999999999999998854 2222 3456999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHh----------cCC-----ChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQL----------KQV-----PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSV 143 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~----------~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~i 143 (251)
+||++.+++.+||.||+.++... ... ...+..+.+.++++.+++.+..++++.+||||||||++|
T Consensus 85 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 164 (255)
T PRK11300 85 TFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEI 164 (255)
T ss_pred eccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHH
Confidence 99999999999999999885321 000 111233567889999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|+||+.+|++|||||||+|||+.+++.++++|.+++ + |.|||++||+++++..+||++++|++|+++..|+++.+
T Consensus 165 a~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 165 ARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHH
Confidence 999999999999999999999999999999999984 4 89999999999999999999999999999999987755
No 114
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-55 Score=378.88 Aligned_cols=216 Identities=25% Similarity=0.393 Sum_probs=191.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hH-HhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MT-TIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~-~~~~~i~~ 78 (251)
++++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .. ..++.++|
T Consensus 6 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (237)
T PRK11614 6 LSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAI 84 (237)
T ss_pred EEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEE
Confidence 47899999996 47899999999999999999999999999999999999999999999999987542 22 34678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-CCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
+||++.+|+.+||.||+.+..... ......+++.++++.+ ++.+..++++.+||||||||++|||||+.+|+++|||
T Consensus 85 ~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlD 162 (237)
T PRK11614 85 VPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162 (237)
T ss_pred eccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEc
Confidence 999999999899999998854322 1223344577788888 5877778899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||+|||+.+++.+.++|++++ +|.|||++|||++++.++|||+++|++|+++..|+++.+.
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 163 EPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred CccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 9999999999999999999985 5899999999999999999999999999999999987664
No 115
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=4.3e-56 Score=360.97 Aligned_cols=215 Identities=22% Similarity=0.354 Sum_probs=192.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
+.+++|.++|+. . --.++++|+.||+++|+|||||||||||++|+|++.|.+|+|+++|++.....+ ..|-++++|
T Consensus 2 l~L~~V~~~y~~-~--~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P-~~RPVSmlF 77 (231)
T COG3840 2 LALDDVRFSYGH-L--PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP-AERPVSMLF 77 (231)
T ss_pred ccccceEEeeCc-c--eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc-ccCChhhhh
Confidence 467899999953 2 346799999999999999999999999999999999999999999999864322 456799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|+++||.++||.+|+.++..-.-.-..+.+++++.++.++||..+.++.|.+|||||||||+|||+|+++-+||+||||+
T Consensus 78 QEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPF 157 (231)
T COG3840 78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPF 157 (231)
T ss_pred hccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCch
Confidence 99999999999999998764221224556778999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|+|||.-|.+.+.++.++. ++.|++||||.++++.+++|+++++++|+|.+.|+..++.
T Consensus 158 sALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 158 SALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred hhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999999999985 4899999999999999999999999999999999876553
No 116
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-55 Score=393.87 Aligned_cols=220 Identities=21% Similarity=0.335 Sum_probs=192.6
Q ss_pred CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC----CCeeEEEEcceeCCC-ChHH-
Q psy7367 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP----VSSGTAKIYNHDIRT-DMTT- 71 (251)
Q Consensus 1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~----p~~G~i~~~g~~~~~-~~~~- 71 (251)
|+++||++.|+.. ..+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++.. ....
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 5799999999642 369999999999999999999999999999999999997 489999999999853 2222
Q ss_pred --h-hcceEEEccCC--CCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCCc---ccCCCCCcCChhHHHHHH
Q psy7367 72 --I-RRSLGVCPQYN--ALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIPH---KRTSLANTLSGGMQRKLS 142 (251)
Q Consensus 72 --~-~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~kqrv~ 142 (251)
. ++.|+|+||++ .+++.+|+.+++....... +....+.++++.++++.++|.+ ..++++++|||||||||+
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~ 163 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVM 163 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHH
Confidence 2 24799999998 5788899999987765543 3445556678999999999964 568899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 143 VAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 143 ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
|||||+.+|++||+||||++||+.++..++++|++++ .|.|+|++|||++.+.++||||++|++|++++.|+++++..
T Consensus 164 iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 164 IAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 9999999999999999999999999999999999985 38999999999999999999999999999999999876643
No 117
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-55 Score=382.06 Aligned_cols=217 Identities=24% Similarity=0.356 Sum_probs=192.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|++++|++ +.+|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++.++|+
T Consensus 3 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 3 LRTENLTVGYGT-KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEeEEEEECC-EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 578999999964 789999999999999999999999999999999999999999999999998743 233456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHH----hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQ----LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
||++.+++.+|++||+.++.. ..+.......+++.++++.+++.+..++++.+|||||+||++|||||+.+|++||
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 161 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVL 161 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998888999999987521 1121123344568899999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|||||+|||+.+++.+.++|++++ +|.|||++||+++++.++||++++|++|+++..|+++++
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 162 LDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 999999999999999999999985 589999999999999999999999999999999887654
No 118
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=5.2e-55 Score=381.13 Aligned_cols=217 Identities=22% Similarity=0.311 Sum_probs=193.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. .....++.++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGG-RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEECC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 579999999964 789999999999999999999999999999999999999999999999998754 333456689999
Q ss_pred ccCCCCCCCCCHHHHHHHHHH-h---cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQ-L---KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~-~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
||++.+++.+||.||+.++.. . ......+..+++.++++.+++.+..++++.+||+|||||++|||||+.+|+++|
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL 160 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999988888999999987532 1 111222334578899999999988999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|||||+|||+.++..+.++|++++ +|.|||++||+++++..+||++++|++|++++.|+++++
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 161 LDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 999999999999999999999986 489999999999999999999999999999999988654
No 119
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=7.2e-55 Score=382.22 Aligned_cols=220 Identities=20% Similarity=0.331 Sum_probs=192.9
Q ss_pred CEEEeEEEEeCC--------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h--
Q psy7367 1 MAIQNLSKRFPN--------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M-- 69 (251)
Q Consensus 1 l~i~~l~~~y~~--------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~-- 69 (251)
|+++||+++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... .
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 578999999952 35799999999999999999999999999999999999999999999999988532 1
Q ss_pred -HHhhcceEEEccCC--CCCCCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHH
Q psy7367 70 -TTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVA 144 (251)
Q Consensus 70 -~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia 144 (251)
..+++.|+|+||++ .+++.+||+||+.+.... .........+++.++++.+++. ...++++.+||||||||++||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~la 162 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIA 162 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHH
Confidence 12467899999997 466789999999876542 2333334456788999999996 678899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 145 MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 145 ~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
|||+.+|++|||||||++||+.++..++++|+++. + |.|||++|||++++..+||++++|++|+++..|+++++..
T Consensus 163 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 163 RALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 99999999999999999999999999999999984 3 8999999999999999999999999999999999876643
No 120
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-55 Score=383.99 Aligned_cols=217 Identities=29% Similarity=0.466 Sum_probs=193.3
Q ss_pred CEEEeEEEEeC-CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFP-NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~-~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|+ +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.++|
T Consensus 8 l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~ 87 (271)
T PRK13632 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGI 87 (271)
T ss_pred EEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEE
Confidence 47899999995 24679999999999999999999999999999999999999999999999999853 33456788999
Q ss_pred EccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 79 CPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 79 v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
+||++. .++.+|++||+.+.....+....+...++.++++.+++.+..++++.+||||||||++|||||+.+|++||||
T Consensus 88 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD 167 (271)
T PRK13632 88 IFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFD 167 (271)
T ss_pred EEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999984 5667899999988655444444445567889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|||+|||+.+++.++++|++++ + +.|||++||+++++. .||++++|++|+++..|+++.+
T Consensus 168 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 168 ESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999985 4 599999999999996 7999999999999999987654
No 121
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-55 Score=383.39 Aligned_cols=217 Identities=26% Similarity=0.376 Sum_probs=192.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++.++|+
T Consensus 12 l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 90 (265)
T PRK10575 12 FALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYL 90 (265)
T ss_pred EEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEe
Confidence 57899999996 4689999999999999999999999999999999999999999999999998743 334556789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHh-c---CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQL-K---QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~-~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
||++.+++.+|+.||+.+.... . +.......+++.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 170 (265)
T PRK10575 91 PQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLL 170 (265)
T ss_pred ccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999888889999999875321 1 11122334568899999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|||||+|||+.+++.++++|.++. + |.|||++||+++++.++||++++|++|+++..|+++++
T Consensus 171 LDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 171 LDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 999999999999999999999984 4 89999999999999999999999999999999987655
No 122
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-54 Score=380.03 Aligned_cols=217 Identities=25% Similarity=0.380 Sum_probs=192.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~ 72 (251)
++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. ....+
T Consensus 14 l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~ 92 (260)
T PRK10744 14 IQVRNLNFYYGK-FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALL 92 (260)
T ss_pred EEEEEEEEEeCC-eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHH
Confidence 478999999964 679999999999999999999999999999999999986 589999999998742 23355
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
+++++|+||++.+++ +|++||+.+..... +.+..+..+++.++++.+++. +..++++.+||||||||++|||||
T Consensus 93 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 171 (260)
T PRK10744 93 RAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGI 171 (260)
T ss_pred hcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 778999999998887 79999998865433 334444556788999999974 456889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|++|||||||+|||+.+++.++++|++++++.|||++||+++++..+||++++|++|+++..|+++++.
T Consensus 172 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 172 AIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999876889999999999999999999999999999999887653
No 123
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1e-54 Score=375.70 Aligned_cols=218 Identities=21% Similarity=0.279 Sum_probs=189.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCeeEEEEcceeCCC-ChHH-hhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML--PVSSGTAKIYNHDIRT-DMTT-IRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~--~p~~G~i~~~g~~~~~-~~~~-~~~~i 76 (251)
|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++.. .... .+..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 68999999996 478999999999999999999999999999999999995 7999999999998754 2222 23469
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHcCCC-cccCCCCC-cCChhHHHHHHHHHHH
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQLKQ-------VPKDLAQLEISNMIVDLGIP-HKRTSLAN-TLSGGMQRKLSVAMAF 147 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~-------~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgG~kqrv~ia~al 147 (251)
+|+||++.+++.+|+.||+.+...... ....+..+++.++++.+++. ...++++. +||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 999999999999999999987543211 12233345788999999997 46778887 5999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhh-cCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|++|||||||++||+.+++.++++|++++ +|.|||++|||++++..+ ||++++|++|+++..|+++...
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 99999999999999999999999999999986 589999999999999998 8999999999999999886543
No 124
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-54 Score=379.14 Aligned_cols=218 Identities=24% Similarity=0.369 Sum_probs=192.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~ 72 (251)
++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. ....+
T Consensus 5 l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 5 IDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred EEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 578999999964 6799999999999999999999999999999999999974 79999999998742 23355
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+++.+||+||+.+....++. ......+.+.++++.+++. +..++++.+|||||||||+|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI 163 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 77899999999999999999999886654432 3344456788899999984 467889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee------CCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA------AGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~------~G~i~~~g~~~~~~ 219 (251)
+.+|+++||||||+|||+.++..++++|++++++.|||++||+++++.++|||+++|+ +|++++.|+++++.
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 164 AVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 9999999999999999999999999999998767999999999999999999999997 79999999987653
No 125
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-54 Score=376.29 Aligned_cols=217 Identities=27% Similarity=0.397 Sum_probs=191.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCeeEEEEcceeCCC-ChHHhhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP---VSSGTAKIYNHDIRT-DMTTIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~-~~~~~~~~i 76 (251)
++++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .....++.+
T Consensus 3 ~~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 3 AKTTNLNLFYGK-KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred eeeeeeEEEECC-EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 578999999964 789999999999999999999999999999999999974 799999999999854 234557789
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFIGG 150 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~~~ 150 (251)
+|+||++.+|+ .|++||+.++...++. ......+++.++++.+++. +..++++.+||||||||++|||||+.+
T Consensus 82 ~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 82 GMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred EEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999887 6999999886544332 1233445678999999995 456788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 151 SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|+++||||||+|||+.++..+.+.|.++.+++|||++||+++++.++||++++|++|+++..|++.++.
T Consensus 161 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 161 PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999877899999999999999999999999999999999887653
No 126
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-55 Score=381.32 Aligned_cols=205 Identities=23% Similarity=0.348 Sum_probs=186.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+++.++|+|
T Consensus 13 l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----~~~~~i~~v~ 87 (257)
T PRK11247 13 LLLNAVSKRYGE-RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA----EAREDTRLMF 87 (257)
T ss_pred EEEEEEEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH----HhhCceEEEe
Confidence 578999999964 78999999999999999999999999999999999999999999999987652 3467899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+||+||+.+... . ...+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||
T Consensus 88 q~~~l~~~~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt 161 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161 (257)
T ss_pred cCccCCCCCcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99999988999999987531 1 12356788999999999899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhh-h-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367 161 SGVDPYSRRSIWELLIKY-K-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 216 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l-~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 216 (251)
+|||+.++..+.++|.++ + .+.|||++|||++++..+||++++|++|+++..++.+
T Consensus 162 ~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 162 GALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999997 4 3899999999999999999999999999999887653
No 127
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-54 Score=385.60 Aligned_cols=217 Identities=24% Similarity=0.429 Sum_probs=190.2
Q ss_pred CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC------ChH
Q psy7367 1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT------DMT 70 (251)
Q Consensus 1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~------~~~ 70 (251)
|+++|++++|++. ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ...
T Consensus 7 l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 86 (289)
T PRK13645 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86 (289)
T ss_pred EEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHH
Confidence 5789999999642 249999999999999999999999999999999999999999999999998741 223
Q ss_pred HhhcceEEEccCCC--CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 71 TIRRSLGVCPQYNA--LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 71 ~~~~~i~~v~q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
.+++.|+|+||++. +++ .|++||+.+.....+.......+++.++++.++|. +..++++.+||||||||++|||||
T Consensus 87 ~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral 165 (289)
T PRK13645 87 RLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGII 165 (289)
T ss_pred HHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 45678999999973 444 69999998865443444444456788899999995 678999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
+.+|++|||||||+|||+.+++.++++|+++. + |+|||++||+++++.++||++++|++|+++..|+++++
T Consensus 166 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 166 AMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999984 3 89999999999999999999999999999999987665
No 128
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-55 Score=377.33 Aligned_cols=213 Identities=29% Similarity=0.431 Sum_probs=189.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++.++|+
T Consensus 4 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 4 IEFKEVSYSSFG-KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred EEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 578999999964 679999999999999999999999999999999999999999999999998753 234556789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
||++.+++ .|++||+.+.....+ . ...++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus 83 ~q~~~~~~-~tv~e~l~~~~~~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 157 (241)
T PRK14250 83 FQQPHLFE-GTVKDNIEYGPMLKG--E--KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157 (241)
T ss_pred ecCchhch-hhHHHHHhcchhhcC--c--HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99998887 699999987543322 1 134678899999997 57889999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 159 PTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
||++||+.+++.+.+.|++++ .|.|||++|||++++..+||++++|++|+++..|++.++.
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 158 PTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 999999999999999999984 3899999999999999999999999999999999887653
No 129
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1e-54 Score=369.46 Aligned_cols=210 Identities=23% Similarity=0.417 Sum_probs=186.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|+. +++++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ...++.++|+|
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~i~~v~ 76 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL-APYQRPVSMLF 76 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC-ChhccceEEEe
Confidence 579999999952 57899999999999999999999999999999999999999999999987532 23567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+|+.+|+.||+.+............++++.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||
T Consensus 77 q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 156 (213)
T TIGR01277 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPF 156 (213)
T ss_pred ccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998999999987543211112223456888999999998889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~ 214 (251)
++||+.++..+.++|.++. + +.|||++||+++++..+||++++|++|++++.|+
T Consensus 157 ~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 157 SALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999984 3 8999999999999999999999999999998764
No 130
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-54 Score=372.12 Aligned_cols=217 Identities=28% Similarity=0.425 Sum_probs=196.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ..++.++|+|
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~i~~~~ 78 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-PHKRPVNTVF 78 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-hhhcceEEEe
Confidence 579999999964 78999999999999999999999999999999999999999999999999885422 2357899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+|+.+|+.||+.+....++.......+++.++++.+++.+..++.+.+||+||+||++|||||+.+|+++||||||
T Consensus 79 q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (232)
T cd03300 79 QNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL 158 (232)
T ss_pred cccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999988999999988765554444455567889999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+|||+.+++.++++|++++ + |.|||++||+++++..+||++++|++|++++.|++..+.
T Consensus 159 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 159 GALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999985 3 899999999999999999999999999999999876553
No 131
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-54 Score=379.77 Aligned_cols=217 Identities=24% Similarity=0.381 Sum_probs=191.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. ....+
T Consensus 20 l~~~nl~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~ 98 (267)
T PRK14235 20 MRARDVSVFYGE-KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVEL 98 (267)
T ss_pred EEEEeEEEEECC-EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHH
Confidence 578999999964 7899999999999999999999999999999999999874 89999999998852 22345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~a 146 (251)
++.++|+||++.+++. |+.||+.+....++. ......+++.++++.+++.+ ..++++.+||||||||++||||
T Consensus 99 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 177 (267)
T PRK14235 99 RARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARA 177 (267)
T ss_pred hhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence 6789999999998875 999999886544332 23334566889999999953 4678899999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|+.+|++|||||||+|||+.++..+.++|+++.++.|||++||+++++..+||++++|++|+++..|+++.+.
T Consensus 178 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 178 IAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999876889999999999999999999999999999999887653
No 132
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-54 Score=384.03 Aligned_cols=217 Identities=28% Similarity=0.435 Sum_probs=194.1
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCe---eEEEEcceeCCC-ChHHhhcc
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSS---GTAKIYNHDIRT-DMTTIRRS 75 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~---G~i~~~g~~~~~-~~~~~~~~ 75 (251)
|+++|++++|++ .+++|+++||+|++||+++|+||||||||||+++|+|+++|++ |+|+++|+++.. .....+++
T Consensus 6 l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ 85 (282)
T PRK13640 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREK 85 (282)
T ss_pred EEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhh
Confidence 578999999953 2469999999999999999999999999999999999999997 999999999854 23345678
Q ss_pred eEEEccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367 76 LGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV 154 (251)
Q Consensus 76 i~~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll 154 (251)
+||+||++. +++.+||+||+.+.....+...++..+++.++++.++|.+..++++.+|||||+||++|||||+.+|++|
T Consensus 86 ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~ll 165 (282)
T PRK13640 86 VGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKII 165 (282)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999984 5677899999988655555555555677899999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 155 ILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 155 llDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
||||||+|||+.++..+.++|+++. + |.|||++||+++++. +|||+++|++|++++.|+++++
T Consensus 166 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 166 ILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999984 4 899999999999995 7999999999999999998765
No 133
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-54 Score=375.93 Aligned_cols=218 Identities=26% Similarity=0.392 Sum_probs=191.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP--V---SSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~--p---~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++.. ....+
T Consensus 5 l~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 83 (252)
T PRK14256 5 VKLEQLNVHFGK-NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83 (252)
T ss_pred EEEEEEEEEeCC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence 578999999964 679999999999999999999999999999999999986 4 69999999998842 12345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+++.+|+.||+.+.....+. ...+..+++.++++.+++.. ..++.+.+||||||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence 77899999999999989999999876544332 23344556889999999853 56788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|++|||||||+|||+.+++.++++|+++.++.|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 164 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 164 AVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999976789999999999999999999999999999999987654
No 134
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-54 Score=381.08 Aligned_cols=217 Identities=21% Similarity=0.307 Sum_probs=192.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
|+++|++++|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++.++|+
T Consensus 8 l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 86 (265)
T PRK10253 8 LRGEQLTLGYGK-YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLL 86 (265)
T ss_pred EEEEEEEEEECC-EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEe
Confidence 578999999964 679999999999999999999999999999999999999999999999998753 334456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHH-hcC---CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQ-LKQ---VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~-~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
||++.+++.+|++||+.+... ... ...+...+++.++++.+++.+..++++.+||||||||++|||||+.+|+++|
T Consensus 87 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 166 (265)
T PRK10253 87 AQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIML 166 (265)
T ss_pred eccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEE
Confidence 999999988999999987521 110 1122334568899999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|||||+|||+.+++.+.++|.++. + |.|||++|||++++..+||++++|++|+++..|++.++
T Consensus 167 lDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 167 LDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred EeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999984 3 89999999999999999999999999999999988654
No 135
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-54 Score=373.21 Aligned_cols=215 Identities=22% Similarity=0.366 Sum_probs=189.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++ .. .++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... .++.++|+|
T Consensus 2 l~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~i~~~~ 77 (232)
T PRK10771 2 LKLTDITWLYHH-LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP-SRRPVSMLF 77 (232)
T ss_pred eEEEEEEEEECC-cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh-hhccEEEEe
Confidence 578999999963 33 49999999999999999999999999999999999999999999998753221 246799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+|+.||+.+.............+++.++++.+++.+..++++.+||||||||++||||++.+|+++||||||
T Consensus 78 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 157 (232)
T PRK10771 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPF 157 (232)
T ss_pred cccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999998999999987532111112234557889999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+|||+.+++.+.++|.++. + |.|||++|||++++..+||++++|++|++++.|+++.+.
T Consensus 158 ~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 158 SALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999984 3 899999999999999999999999999999999887654
No 136
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-54 Score=383.37 Aligned_cols=219 Identities=27% Similarity=0.416 Sum_probs=194.0
Q ss_pred CEEEeEEEEeCC-----CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhh
Q psy7367 1 MAIQNLSKRFPN-----GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIR 73 (251)
Q Consensus 1 l~i~~l~~~y~~-----~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~ 73 (251)
++++|++++|++ .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ...++
T Consensus 5 l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 84 (280)
T PRK13633 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIR 84 (280)
T ss_pred EEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHh
Confidence 578999999963 24699999999999999999999999999999999999999999999999988532 23457
Q ss_pred cceEEEccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 74 RSLGVCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 74 ~~i~~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
+.++|+||++. .+...||.+|+.|.....+....+..+++.++++.++|.+..++++.+||||||||++|||||+.+|+
T Consensus 85 ~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ 164 (280)
T PRK13633 85 NKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPE 164 (280)
T ss_pred hheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 88999999974 23346999999987655455555556778999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
++||||||+|||+.++..++++|++++ + |.|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 165 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 165 CIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999984 3 8999999999999986 99999999999999999876643
No 137
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-54 Score=380.42 Aligned_cols=218 Identities=26% Similarity=0.396 Sum_probs=194.1
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.++|
T Consensus 8 l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 87 (269)
T PRK13648 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGI 87 (269)
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeE
Confidence 5789999999642 459999999999999999999999999999999999999999999999998853 33456778999
Q ss_pred EccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 79 CPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 79 v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
+||++. +++..|+.+|+.+.....+.......+++.++++.+++.+..++++.+||+|||||++|||||+.+|++||||
T Consensus 88 v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD 167 (269)
T PRK13648 88 VFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILD 167 (269)
T ss_pred EEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999984 6777899999988755444444455567889999999999899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||+|||+.+++.++++|+++. + |.|||++||+++++.. |||+++|++|++++.|+++.+.
T Consensus 168 EPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 168 EATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999984 4 8999999999999985 9999999999999999987653
No 138
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=6.2e-55 Score=381.86 Aligned_cols=217 Identities=24% Similarity=0.373 Sum_probs=191.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEcceeCCC------ChHH
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS---SGTAKIYNHDIRT------DMTT 71 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~------~~~~ 71 (251)
|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ....
T Consensus 5 l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (262)
T PRK09984 5 IRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK 83 (262)
T ss_pred EEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH
Confidence 57899999996 478999999999999999999999999999999999999986 4999999998743 1234
Q ss_pred hhcceEEEccCCCCCCCCCHHHHHHHHHHh--------cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHH
Q psy7367 72 IRRSLGVCPQYNALFDKLTVEEHMWFYSQL--------KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSV 143 (251)
Q Consensus 72 ~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~i 143 (251)
+++.++|+||++.+++.+|++||+.+.... .+........++.++++.+++.+..++++.+||+|||||++|
T Consensus 84 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 163 (262)
T PRK09984 84 SRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAI 163 (262)
T ss_pred HHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHH
Confidence 467899999999999999999999875321 011122344578999999999988899999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
||||+.+|++|||||||+|||+.+++.+.++|+++. + |.|||++|||++++..+||++++|++|+++..|+++++
T Consensus 164 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 164 ARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred HHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999999999999999985 3 89999999999999999999999999999999998765
No 139
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.1e-54 Score=390.29 Aligned_cols=220 Identities=25% Similarity=0.374 Sum_probs=193.2
Q ss_pred CEEEeEEEEeCC---CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEcceeCCC-ChHH--
Q psy7367 1 MAIQNLSKRFPN---GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS---SGTAKIYNHDIRT-DMTT-- 71 (251)
Q Consensus 1 l~i~~l~~~y~~---~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~-~~~~-- 71 (251)
|+++|+++.|+. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|+++|+++.. ...+
T Consensus 13 L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~ 92 (330)
T PRK09473 13 LDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELN 92 (330)
T ss_pred EEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHH
Confidence 578999999942 246999999999999999999999999999999999999996 9999999999854 2222
Q ss_pred -hh-cceEEEccCC--CCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCCc---ccCCCCCcCChhHHHHHHH
Q psy7367 72 -IR-RSLGVCPQYN--ALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIPH---KRTSLANTLSGGMQRKLSV 143 (251)
Q Consensus 72 -~~-~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~kqrv~i 143 (251)
+| +.|+|+||++ .+++.+|+.+++.+....+ +....+..+++.++++.++|.+ ..++++++|||||+|||+|
T Consensus 93 ~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~I 172 (330)
T PRK09473 93 KLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMI 172 (330)
T ss_pred HHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHH
Confidence 23 4799999998 6888899999998765543 3445555678899999999974 3578999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
||||+.+|++||+||||++||+.++..++++|++++ + |.|+|++|||++.+.++|||+++|++|++++.|+++++..
T Consensus 173 ArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 173 AMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999985 3 8999999999999999999999999999999999876643
No 140
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.4e-54 Score=380.81 Aligned_cols=220 Identities=23% Similarity=0.354 Sum_probs=192.5
Q ss_pred CEEEeEEEEeCC--------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHH
Q psy7367 1 MAIQNLSKRFPN--------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTT 71 (251)
Q Consensus 1 l~i~~l~~~y~~--------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~ 71 (251)
|+++||+++|++ .+++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++.. ....
T Consensus 5 l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 84 (267)
T PRK15112 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSY 84 (267)
T ss_pred EEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhh
Confidence 579999999952 2469999999999999999999999999999999999999999999999998853 2233
Q ss_pred hhcceEEEccCCC--CCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 72 IRRSLGVCPQYNA--LFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 72 ~~~~i~~v~q~~~--l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
.++.++|+||++. +++.+|+.+++.+..... ........+++.++++.+++. ...++++.+||||||||++|||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 164 (267)
T PRK15112 85 RSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARAL 164 (267)
T ss_pred HhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHH
Confidence 4567999999974 577889999998865543 233344456788999999995 677889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+.+|++|||||||++||+.+++.+.++|.++. + |.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 165 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 239 (267)
T PRK15112 165 ILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239 (267)
T ss_pred HhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence 99999999999999999999999999999984 4 8999999999999999999999999999999998876643
No 141
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.1e-54 Score=393.84 Aligned_cols=210 Identities=22% Similarity=0.396 Sum_probs=188.3
Q ss_pred eEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-----hHHhhcceEEE
Q psy7367 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-----MTTIRRSLGVC 79 (251)
Q Consensus 5 ~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~~i~~v 79 (251)
||+|+|++ +. + ++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++... ....++.++|+
T Consensus 4 ~l~~~~~~-~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGD-FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC-EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 89999964 44 5 99999999999999999999999999999999999999999999987431 12346789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP 159 (251)
||++.+|+++||+||+.|+.... ...+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEP 158 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP 158 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 99999999999999999865432 2233445688999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 160 TSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 160 t~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|+|||+.+++.++++|+++. + |.|||++|||++++..+||++++|++|+++..|+++++.
T Consensus 159 ts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 159 LAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 99999999999999999984 4 899999999999999999999999999999999987654
No 142
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-54 Score=373.43 Aligned_cols=217 Identities=25% Similarity=0.398 Sum_probs=190.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|+++|+++.. ....+
T Consensus 4 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 4 ISVKDLDLFYGD-FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred EEEEEEEEEECC-ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 578999999964 6799999999999999999999999999999999999763 69999999998753 23345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+++ +|++||+.+.....+. ......+++.++++.+++. +..++++.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 778999999998887 8999999986554443 2334456788889999874 456889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|++|||||||+|||+.++..+.++|++++++.|||++||+++++.++||++++|++|+++..|+++.+.
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999876899999999999999999999999999999999887653
No 143
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=4.1e-54 Score=371.61 Aligned_cols=217 Identities=26% Similarity=0.424 Sum_probs=195.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++ +++|+++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++.++|+|
T Consensus 1 i~i~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~-~~~~~i~~~~ 78 (237)
T TIGR00968 1 IEIANISKRFGS-FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH-ARDRKIGFVF 78 (237)
T ss_pred CEEEEEEEEECC-eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-hhhcCEEEEe
Confidence 689999999964 68999999999999999999999999999999999999999999999999875322 2457899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+|+.+|+.||+.+....++.......+.+.++++.+++.+..++.+.+||+||+||++|||||+.+|+++||||||
T Consensus 79 q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (237)
T TIGR00968 79 QHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPF 158 (237)
T ss_pred cChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999998999999987665544444444567889999999998899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+|||+.+++.++++|.+++ + ++|||++||+++++.++||++++|++|++++.|+++.+.
T Consensus 159 ~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 159 GALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999985 4 899999999999999999999999999999999887664
No 144
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-54 Score=370.55 Aligned_cols=216 Identities=28% Similarity=0.415 Sum_probs=194.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ + +|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... .++.++|+|
T Consensus 1 l~~~~l~~~~~~-~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~-~~~~i~~~~ 77 (235)
T cd03299 1 LKVENLSKDWKE-F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-EKRDISYVP 77 (235)
T ss_pred CeeEeEEEEeCC-c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-hHcCEEEEe
Confidence 579999999963 4 8999999999999999999999999999999999999999999999998854222 357899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+|+.+|+.||+.+.....+....+..+.+.++++.+++.+..++++.+|||||+||++|||||+.+|++++|||||
T Consensus 78 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 157 (235)
T cd03299 78 QNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPF 157 (235)
T ss_pred ecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 99999988999999988655444444455567889999999999899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+|||+.+++.++++|+++. + +.|||++||+++++..+||++++|++|++++.|+++.+.
T Consensus 158 ~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 158 SALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999984 3 899999999999999999999999999999999876553
No 145
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.7e-54 Score=373.84 Aligned_cols=200 Identities=28% Similarity=0.461 Sum_probs=179.4
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc-cCCCCCCCCCHH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP-QYNALFDKLTVE 92 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~-q~~~l~~~ltv~ 92 (251)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++......+++.++|+| |.+.+++.+|++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 3699999999999999999999999999999999999999999999999886433334567899998 567788889999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q psy7367 93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172 (251)
Q Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~ 172 (251)
||+.+....++....+..+++.++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.+++.+.
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 193 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIR 193 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 99988766555444555567888999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 173 ELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 173 ~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
++|.+++ + +.|||++||+++++..+||++++|++|++++.|
T Consensus 194 ~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 194 NFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999984 3 899999999999999999999999999998654
No 146
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-54 Score=375.75 Aligned_cols=217 Identities=26% Similarity=0.425 Sum_probs=191.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP--V---SSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~--p---~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++.. ....+
T Consensus 13 l~i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 91 (259)
T PRK14274 13 YQINGMNLWYGQ-HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91 (259)
T ss_pred EEEeeEEEEECC-eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHH
Confidence 478999999964 679999999999999999999999999999999999987 3 69999999998742 22345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+++. |++||+.+.....+. ...+..+++.++++.+++. +..++++.+||||||||++|||||
T Consensus 92 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral 170 (259)
T PRK14274 92 RKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARAL 170 (259)
T ss_pred hhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 6789999999988875 999999886544432 2334455688899999985 346789999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|+++||||||+|||+.++..++++|.+++++.|||++||+++++.++|||+++|++|+++..|+++++.
T Consensus 171 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 171 ATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999876899999999999999999999999999999999988764
No 147
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-54 Score=374.04 Aligned_cols=217 Identities=25% Similarity=0.389 Sum_probs=191.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~ 72 (251)
++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|+++|+++.. .....
T Consensus 5 l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (251)
T PRK14270 5 MESKNLNLWYGE-KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVEL 83 (251)
T ss_pred EEEEEeEEEECC-eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHH
Confidence 478999999964 7799999999999999999999999999999999999875 79999999998843 12345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+++ +|++||+.+.....+. ...+..+++.++++.+++. +..++++.+||+|||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 162 (251)
T PRK14270 84 RKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTI 162 (251)
T ss_pred HhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 678999999999887 8999999987554443 2334455678899999874 456789999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|+++||||||+|||+.++..++++|+++.++.|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 163 AVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999866799999999999999999999999999999999987653
No 148
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.2e-54 Score=368.74 Aligned_cols=208 Identities=31% Similarity=0.510 Sum_probs=188.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .++.++|+|
T Consensus 1 l~l~~v~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~~~~~~~~~ 76 (223)
T TIGR03740 1 LETKNLSKRFGK-QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---DLHKIGSLI 76 (223)
T ss_pred CEEEeEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---ccccEEEEc
Confidence 579999999964 7899999999999999999999999999999999999999999999999887421 135799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+|++||+.++....+.. ..++.++++.+++.+..++++.+||+||+||++||||++.+|+++||||||
T Consensus 77 q~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~ 152 (223)
T TIGR03740 77 ESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT 152 (223)
T ss_pred CCCCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 9999998899999998876544332 235778999999999899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 216 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 216 (251)
+|||+.+++.++++|++++ +|.|||++|||++++..+|||+++|++|+++..|++.
T Consensus 153 ~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 153 NGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 9999999999999999985 5899999999999999999999999999999988864
No 149
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-54 Score=373.17 Aligned_cols=218 Identities=22% Similarity=0.391 Sum_probs=190.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC---CCC--CeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LPV--SSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl---~~p--~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+ .+| ++|+|.++|+++.. ....+
T Consensus 4 l~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14245 4 IDARDVNFWYGD-FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDEL 82 (250)
T ss_pred EEEEEEEEEECC-EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHH
Confidence 578999999964 6799999999999999999999999999999999997 455 58999999998853 12345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+++ .|+.||+.+....++.. .....+++.++++.+++.+ ..++++.+||||||||++|||||
T Consensus 83 ~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14245 83 RKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM 161 (250)
T ss_pred hhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 678999999998887 69999998865544332 2334566889999999853 56788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+.+|++|||||||+|||+.++..++++|+++.+++|||++|||++++.++|||+++|++|+++..|+++++.+
T Consensus 162 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 162 AVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999998768999999999999999999999999999999999887643
No 150
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-54 Score=393.31 Aligned_cols=209 Identities=20% Similarity=0.368 Sum_probs=187.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-----hHHhhcc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-----MTTIRRS 75 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~~ 75 (251)
|++ ||+|+|++ +. + |+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++... ....+++
T Consensus 2 l~~-~l~k~~~~-~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGD-LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCC-EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 355 99999964 43 3 89999999999999999999999999999999999999999999987431 2234678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
++|+||++.+|+++||+||+.+.... ...+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llL 151 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAK------SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLL 151 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhh------hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999885431 223568899999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||||++||+.+++.+++.|+++. + |.|||++|||++++..+||++++|++|+++..|+++++.
T Consensus 152 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 152 MDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999999999999999984 4 899999999999999999999999999999999987664
No 151
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-54 Score=373.26 Aligned_cols=217 Identities=26% Similarity=0.423 Sum_probs=189.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CC---CeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML--PV---SSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~--~p---~~G~i~~~g~~~~~---~~~~~ 72 (251)
++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+. +| ++|+|+++|+++.. ....+
T Consensus 6 l~~~~l~~~~~~-~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14239 6 LQVSDLSVYYNK-KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL 84 (252)
T ss_pred EEEEeeEEEECC-eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence 478999999964 67999999999999999999999999999999999985 46 59999999998742 22345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+|+ +|++||+.+.....+.. .....+++.++++.+++. +..++++.+||+|||||++|||||
T Consensus 85 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14239 85 RKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL 163 (252)
T ss_pred hhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 678999999999887 79999998875544432 223445678899999874 456889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|++|||||||+|||+.++..++++|+++.++.|||++|||++++..+|||+++|++|++++.|++.++.
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 164 ATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999866799999999999999999999999999999999987653
No 152
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-54 Score=379.60 Aligned_cols=218 Identities=27% Similarity=0.395 Sum_probs=193.6
Q ss_pred CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~ 77 (251)
|+++|++++|++. ..+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.. .....++.++
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (277)
T PRK13642 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIG 84 (277)
T ss_pred EEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceE
Confidence 4789999999632 359999999999999999999999999999999999999999999999999854 3345678899
Q ss_pred EEccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 78 VCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 78 ~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
|+||++. +++..||.||+.+.....+.......+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus 85 ~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llll 164 (277)
T PRK13642 85 MVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIIL 164 (277)
T ss_pred EEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999984 566789999998765544444445556789999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
||||+|||+.+++.++++|.++. + |.|||++||+++++. .||++++|++|++++.|+++++.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 165 DESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999985 4 899999999999997 59999999999999999987653
No 153
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-54 Score=388.60 Aligned_cols=219 Identities=20% Similarity=0.294 Sum_probs=188.6
Q ss_pred CEEEeEEEEeC---CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC----CCeeEEEEcceeCCC-ChHH-
Q psy7367 1 MAIQNLSKRFP---NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP----VSSGTAKIYNHDIRT-DMTT- 71 (251)
Q Consensus 1 l~i~~l~~~y~---~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~----p~~G~i~~~g~~~~~-~~~~- 71 (251)
|+++||+++|+ +...+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++.. ....
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 57999999994 22569999999999999999999999999999999999986 589999999999853 2222
Q ss_pred --h-hcceEEEccCCC--CCCCCCHHHHHHHHHHhc---C---CChHHHHHHHHHHHHHcCCCc---ccCCCCCcCChhH
Q psy7367 72 --I-RRSLGVCPQYNA--LFDKLTVEEHMWFYSQLK---Q---VPKDLAQLEISNMIVDLGIPH---KRTSLANTLSGGM 137 (251)
Q Consensus 72 --~-~~~i~~v~q~~~--l~~~ltv~e~l~~~~~~~---~---~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~ 137 (251)
. ++.|+|+||++. +++.+||.+++.+..... + ....+..+++.++++.++|.+ ..++++.+|||||
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~ 163 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGE 163 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHH
Confidence 2 357999999985 677899999997643211 1 111334567889999999974 4588999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCH
Q psy7367 138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215 (251)
Q Consensus 138 kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~ 215 (251)
||||+|||||+.+|++|||||||++||+.++..++++|++++ + |.|||+||||++++.++|||+++|++|+|++.|++
T Consensus 164 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~ 243 (330)
T PRK15093 164 CQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPS 243 (330)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999985 3 89999999999999999999999999999999998
Q ss_pred HHHH
Q psy7367 216 VFLK 219 (251)
Q Consensus 216 ~~~~ 219 (251)
+++.
T Consensus 244 ~~i~ 247 (330)
T PRK15093 244 KELV 247 (330)
T ss_pred HHHH
Confidence 7654
No 154
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-54 Score=377.97 Aligned_cols=216 Identities=24% Similarity=0.317 Sum_probs=189.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. ....+
T Consensus 14 l~i~nl~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~ 92 (269)
T PRK14259 14 ISLQNVTISYGT-FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEV 92 (269)
T ss_pred EEEEeEEEEECC-EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHH
Confidence 578999999964 779999999999999999999999999999999999987 699999999998742 23456
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
++.++|+||++.+|+ .||+||+.+.....+... ...+++.++++.+++. +..++++.+||+|||||++|||||+
T Consensus 93 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~ 170 (269)
T PRK14259 93 RRRIGMVFQQPNPFP-KSIYENIAFGARINGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA 170 (269)
T ss_pred hhceEEEccCCccch-hhHHHHHhhhhhhcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 678999999999887 499999988765443322 2345677888888763 4578899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC-----------CEEEeecCHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA-----------GKLQCCGSSVF 217 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~-----------G~i~~~g~~~~ 217 (251)
.+|++|||||||+|||+.+++.++++|++++++.|||++||+++++..+||++++|++ |++++.|+++.
T Consensus 171 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~ 250 (269)
T PRK14259 171 IEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKK 250 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHH
Confidence 9999999999999999999999999999987689999999999999999999999996 67899999876
Q ss_pred HH
Q psy7367 218 LK 219 (251)
Q Consensus 218 ~~ 219 (251)
+.
T Consensus 251 ~~ 252 (269)
T PRK14259 251 IF 252 (269)
T ss_pred HH
Confidence 64
No 155
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-54 Score=366.12 Aligned_cols=205 Identities=28% Similarity=0.455 Sum_probs=182.1
Q ss_pred EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----ChHHhhcceE
Q psy7367 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----DMTTIRRSLG 77 (251)
Q Consensus 3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----~~~~~~~~i~ 77 (251)
+-||+|+|++ +.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++.++
T Consensus 3 ~~~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 3 CVDIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 3499999964 555 99999999 9999999999999999999999999999999999998742 1223567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
|+||++.+++.+|+.||+.+..... .....++++.++++.+++.+..++++.+||||||||++|||||+.+|+++|||
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 156 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLD 156 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999999999999999998765332 22334457889999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
|||+|||+.+++.+.++|+++. + |.|||++|||++++..+||++++|++|++++.|
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 157 EPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999984 4 899999999999999999999999999998764
No 156
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-54 Score=378.22 Aligned_cols=221 Identities=27% Similarity=0.438 Sum_probs=195.9
Q ss_pred CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-C----CeeEEEEcceeCCC-ChH-
Q psy7367 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-V----SSGTAKIYNHDIRT-DMT- 70 (251)
Q Consensus 1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-p----~~G~i~~~g~~~~~-~~~- 70 (251)
|+++||+..|... ..+++||||++++||++||+|.|||||||+.++|+|+++ | .+|+|.|+|+++.. +.+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 6899999999532 369999999999999999999999999999999999997 4 57999999998854 222
Q ss_pred --Hhh-cceEEEccCC--CCCCCCCHHHHHHHHHHhcC-C-ChHHHHHHHHHHHHHcCCCc---ccCCCCCcCChhHHHH
Q psy7367 71 --TIR-RSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQ-V-PKDLAQLEISNMIVDLGIPH---KRTSLANTLSGGMQRK 140 (251)
Q Consensus 71 --~~~-~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~kqr 140 (251)
.+| +.|+|+||+| .|.|-+|+.+.+.-..+.+. . .++++.+++.++|+.++|.+ ..+.+|++|||||+||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR 161 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR 161 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence 333 6899999997 67888999999988777543 3 35667889999999999975 5689999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 141 LSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 141 v~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|.||.||+.+|++||+||||++||...+.+++++|++++ .|.++|+||||+..+.++||||+||..|+|++.|+.+++
T Consensus 162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i 241 (316)
T COG0444 162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241 (316)
T ss_pred HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHH
Confidence 999999999999999999999999999999999999995 399999999999999999999999999999999998766
Q ss_pred Hhh
Q psy7367 219 KNS 221 (251)
Q Consensus 219 ~~~ 221 (251)
...
T Consensus 242 ~~~ 244 (316)
T COG0444 242 FKN 244 (316)
T ss_pred hcC
Confidence 543
No 157
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-54 Score=375.68 Aligned_cols=217 Identities=25% Similarity=0.353 Sum_probs=189.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~ 72 (251)
++++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++.. ....+
T Consensus 22 l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 100 (268)
T PRK14248 22 LEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNL 100 (268)
T ss_pred EEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHH
Confidence 47899999996 4789999999999999999999999999999999999864 799999999998853 12345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
+++++|+||++.+|+. |++||+.+.....+.. .....+.+.++++.+++. +..++++.+||||||||++|||||
T Consensus 101 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral 179 (268)
T PRK14248 101 RREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTL 179 (268)
T ss_pred hccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 6789999999998875 9999998865433322 223345677889999884 456789999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|++|||||||+|||+.++..+.++|++++++.|||++|||++++..+|||+++|++|+++..|+++.+.
T Consensus 180 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 180 AMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred hCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999876789999999999999999999999999999999987654
No 158
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-54 Score=371.87 Aligned_cols=217 Identities=26% Similarity=0.421 Sum_probs=190.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~ 72 (251)
++++|++++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. ....+
T Consensus 5 l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~ 83 (251)
T PRK14251 5 ISAKDVHLSYGN-YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL 83 (251)
T ss_pred EEEEeeEEEECC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence 478999999964 789999999999999999999999999999999999987 489999999998742 22345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|++|++.+|+ .|++||+.+.....+.. .....+++.++++.+++. ...++++.+||||||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral 162 (251)
T PRK14251 84 RKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL 162 (251)
T ss_pred hccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence 678999999998886 79999998865443332 223345678899999984 456789999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|+++||||||++||+.+++.+.+.|++++++.|||++||+++++.++||++++|++|+++..|+++.+.
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 163 AVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred hcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999876799999999999999999999999999999999887653
No 159
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-53 Score=371.08 Aligned_cols=218 Identities=26% Similarity=0.364 Sum_probs=190.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----eeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-----SGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~---~~~~~ 72 (251)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|+++|+++.. ....+
T Consensus 5 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 5 LSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 47899999996 478999999999999999999999999999999999999874 8999999998742 22345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+++.+|+.||+.+.....+. ..+...+.+.++++.+++. +..++++.+||||||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARAL 163 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 67899999999999989999999876543332 2333445667777877753 456888999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|++|||||||+|||+.++..+.++|++++++.|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 164 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 164 AVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999876899999999999999999999999999999999987654
No 160
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-53 Score=370.62 Aligned_cols=218 Identities=26% Similarity=0.399 Sum_probs=191.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. ....+
T Consensus 4 l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 4 IEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred EEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 57899999996 46899999999999999999999999999999999999874 89999999998753 12245
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+++ +|++||+.+.....+.. .....+.+.++++.+++.. ..++++.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 678999999999887 89999998865443322 2334456788999999853 46889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+.+|++|||||||+|||+.++..+.++|++++++.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 162 AVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999999998768999999999999999999999999999999999876643
No 161
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.2e-54 Score=449.00 Aligned_cols=233 Identities=60% Similarity=1.008 Sum_probs=217.1
Q ss_pred CEEEeEEEEeC-CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFP-NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~-~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 79 (251)
|+++||+|+|+ +++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++......+|+.+||+
T Consensus 929 L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~ 1008 (2272)
T TIGR01257 929 VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMC 1008 (2272)
T ss_pred EEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEE
Confidence 47899999995 24679999999999999999999999999999999999999999999999999865555667889999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP 159 (251)
||++.+++.+||+||+.++.+.++.+.++.+++++++++.++|.+..++++.+|||||||||+||+||+.+|+++|||||
T Consensus 1009 pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEP 1088 (2272)
T TIGR01257 1009 PQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEP 1088 (2272)
T ss_pred ecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 99999999999999999988877766556667899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcCcceEEEecc
Q psy7367 160 TSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMK 233 (251)
Q Consensus 160 t~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 233 (251)
|+|||+.+++.++++|+++++|+|||++||+++++..+|||+++|++|++++.|++.++++.++.+|++.+.+.
T Consensus 1089 TSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~gy~l~~~~~ 1162 (2272)
T TIGR01257 1089 TSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRK 1162 (2272)
T ss_pred CcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCCcEEEEEEec
Confidence 99999999999999999997799999999999999999999999999999999999999999999999887654
No 162
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=5.6e-54 Score=449.35 Aligned_cols=231 Identities=39% Similarity=0.669 Sum_probs=213.6
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 79 (251)
|+++||+|+|++ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.......++.|||+
T Consensus 1938 L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~ 2017 (2272)
T TIGR01257 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYC 2017 (2272)
T ss_pred EEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEE
Confidence 478999999964 2579999999999999999999999999999999999999999999999999865444567889999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP 159 (251)
||++.+++.+||+||+.+++++++.+.++.++.++++++.++|.+..++++++||||||||++||+||+.+|+++|||||
T Consensus 2018 pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEP 2097 (2272)
T TIGR01257 2018 PQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEP 2097 (2272)
T ss_pred eccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99999999999999999988887776666667788999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcCcceEEEe
Q psy7367 160 TSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLD 231 (251)
Q Consensus 160 t~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 231 (251)
|+||||.+++.++++|++++ +|+|||++||++++++.+|||+++|++|++++.|+++++++.++.+|.+.+.
T Consensus 2098 TsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~g~~l~i~ 2170 (2272)
T TIGR01257 2098 TTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMK 2170 (2272)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCCceEEEEE
Confidence 99999999999999999985 5999999999999999999999999999999999999999999888776654
No 163
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.8e-54 Score=409.26 Aligned_cols=216 Identities=21% Similarity=0.405 Sum_probs=192.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hH-HhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MT-TIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~-~~~~~i~~ 78 (251)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... .. ..++.++|
T Consensus 5 i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 83 (501)
T PRK10762 5 LQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI 83 (501)
T ss_pred EEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 57899999996 47899999999999999999999999999999999999999999999999988532 22 23567999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLK----QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV 154 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll 154 (251)
+||++.+++.+||+||+.++...+ .....+.++++.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus 84 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 163 (501)
T PRK10762 84 IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVI 163 (501)
T ss_pred EEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999998864322 1223344567889999999998889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367 155 ILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 217 (251)
Q Consensus 155 llDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 217 (251)
||||||++||+.++..++++|++++ +|.|||++|||++++..+||++++|++|+++..|+++.
T Consensus 164 lLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 164 IMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCc
Confidence 9999999999999999999999985 58999999999999999999999999999999887653
No 164
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.5e-53 Score=372.28 Aligned_cols=218 Identities=22% Similarity=0.348 Sum_probs=189.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee-----CCC-ChHH---
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD-----IRT-DMTT--- 71 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~-----~~~-~~~~--- 71 (251)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|++ +.. ....
T Consensus 7 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~ 85 (258)
T PRK11701 7 LSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRR 85 (258)
T ss_pred EEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHH
Confidence 578999999964 689999999999999999999999999999999999999999999999998 643 1222
Q ss_pred -hhcceEEEccCC--CCCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHH
Q psy7367 72 -IRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 72 -~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~a 146 (251)
.++.++|+||++ .+++.+|+.+|+.+...... .......+++.++++.+++. +..++++.+||||||||++||||
T Consensus 86 ~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lara 165 (258)
T PRK11701 86 LLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARN 165 (258)
T ss_pred HhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHH
Confidence 245799999997 46777899999976543222 12233456788999999997 47789999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|+.+|++|||||||++||+.+++.+++.|+++. + |.|||++||+++++..+||++++|++|+++..|+++++.
T Consensus 166 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 166 LVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999974 3 899999999999999999999999999999999887654
No 165
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-53 Score=369.46 Aligned_cols=218 Identities=23% Similarity=0.357 Sum_probs=190.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----eeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-----SGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~---~~~~~ 72 (251)
++++|++++|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++.. ....+
T Consensus 5 l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 83 (251)
T PRK14249 5 IKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNL 83 (251)
T ss_pred EEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHh
Confidence 57899999996 467999999999999999999999999999999999999997 6999999998742 22345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+++. |++||+.+....++.. .+...+.+.++++.+++. +..++++.+||||||||++|||||
T Consensus 84 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 162 (251)
T PRK14249 84 RKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL 162 (251)
T ss_pred hceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 7889999999998875 9999999865544332 223345677788888864 457889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+.+|+++||||||+|||+.++..+.++|++++++.|||++||+++++..+||++++|++|+++..|+++++..
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14249 163 AIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999999998768999999999999999999999999999999999876643
No 166
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=4.4e-54 Score=370.89 Aligned_cols=216 Identities=24% Similarity=0.400 Sum_probs=184.1
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++ ++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 579999999963 3579999999999999999999999999999999999999999999999998753 33445678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHH-----HHHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ-----LEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p 151 (251)
+||++.+++ .||.||+.+... ........ ..+.++++.+ ++....++++.+|||||||||+|||||+.+|
T Consensus 81 ~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (237)
T cd03252 81 VLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP 157 (237)
T ss_pred EcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999998875 699999987432 11111111 1234455655 5666678899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+++||||||++||+.+++.+.+.|+++.+|+|||++|||++++. .||++++|++|+++..|+++.+..
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 158 RILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999877899999999999996 599999999999999999876543
No 167
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-53 Score=370.02 Aligned_cols=216 Identities=25% Similarity=0.401 Sum_probs=188.9
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHhh
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTIR 73 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~~ 73 (251)
+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++.. ....++
T Consensus 7 ~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 7 SVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 5789999996 4789999999999999999999999999999999999986 479999999998742 122456
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHHH
Q psy7367 74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~al 147 (251)
+.++|+||++.+++. |++||+.+....++. ......+.+.++++.+++.+ ..++++.+||||||||++|||||
T Consensus 86 ~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 164 (251)
T PRK14244 86 AKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI 164 (251)
T ss_pred hhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence 789999999988885 999999876443332 22334456788999999964 45778999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|++|||||||+|||+.+++.+.+.|+++++++|||++||+++++..+|||+++|++|+++..|+++.+.
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 165 AVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999877899999999999999999999999999999999887654
No 168
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-53 Score=369.44 Aligned_cols=217 Identities=25% Similarity=0.380 Sum_probs=190.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC--ChHHhh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT--DMTTIR 73 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~--~~~~~~ 73 (251)
++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++.. ....++
T Consensus 4 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 4 FNIENLDLFYGE-NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred EEEeccEEEECC-eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 478999999964 7899999999999999999999999999999999999986 59999999998742 234567
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
+.++|+||++.+|+ .|+.||+.+.....+.. .....+++.++++.+++. +..++++.+|||||||||+|||||+
T Consensus 83 ~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (249)
T PRK14253 83 IKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA 161 (249)
T ss_pred hheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH
Confidence 78999999999887 79999998765443322 233345677888988874 4567889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
.+|+++||||||+|||+.++..++++|++++++.|||++||+++++..+|||+++|++|+++..|+++.+.
T Consensus 162 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 162 MEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999976799999999999999999999999999999999877653
No 169
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-53 Score=372.66 Aligned_cols=217 Identities=25% Similarity=0.354 Sum_probs=191.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. ....+
T Consensus 21 l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 99 (267)
T PRK14237 21 LSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEM 99 (267)
T ss_pred EEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHH
Confidence 57899999996 4789999999999999999999999999999999999986 589999999998842 23345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.|+|+||++.+++ .||+||+.+.....+. ......+++.++++.+++. +..++++.+||+|||||++|||||
T Consensus 100 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral 178 (267)
T PRK14237 100 RKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAI 178 (267)
T ss_pred hcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 778999999998887 6999999886544332 2334456688899999984 457889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|++|||||||+|||+.++..+.++|++++++.|||++||+++++..+||++++|++|++++.|+++.+.
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 179 AVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999876899999999999999999999999999999999987663
No 170
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-54 Score=407.57 Aligned_cols=216 Identities=23% Similarity=0.392 Sum_probs=193.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEEcceeCCCC-hH-Hhhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV--SSGTAKIYNHDIRTD-MT-TIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~~-~~-~~~~~i 76 (251)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... .. ..++.+
T Consensus 6 l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 84 (506)
T PRK13549 6 LEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGI 84 (506)
T ss_pred EEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCe
Confidence 57899999996 47899999999999999999999999999999999999986 899999999998542 22 235779
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhc--C-CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCE
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQLK--Q-VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRT 153 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~l 153 (251)
+|+||++.+++.+||+||+.++...+ + .......+++.++++.+++.+..++++.+|||||||||+|||||+.+|++
T Consensus 85 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l 164 (506)
T PRK13549 85 AIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARL 164 (506)
T ss_pred EEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998865432 1 23334456789999999999888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367 154 VILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 217 (251)
Q Consensus 154 lllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 217 (251)
|||||||++||+.++..++++|.+++ +|.|||++|||++++..+||++++|++|+++..|+++.
T Consensus 165 llLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 165 LILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccccc
Confidence 99999999999999999999999985 58999999999999999999999999999999888653
No 171
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-53 Score=374.87 Aligned_cols=217 Identities=21% Similarity=0.256 Sum_probs=190.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--------eeEEEEcceeCCC-ChHH
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS--------SGTAKIYNHDIRT-DMTT 71 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~--------~G~i~~~g~~~~~-~~~~ 71 (251)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.. ....
T Consensus 2 l~~~nl~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVARRH-RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEECC-EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 579999999964 78999999999999999999999999999999999999998 9999999998753 3344
Q ss_pred hhcceEEEccCCCCCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH
Q psy7367 72 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLK----QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 72 ~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
.++.++|+||++.+++.+|+.||+.+..... +....+..+.+.++++.+++.+..++++.+|||||||||+|||||
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 160 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVL 160 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 5667999999987666789999998753211 111123345688999999999989999999999999999999999
Q ss_pred c---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367 148 I---------GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 216 (251)
Q Consensus 148 ~---------~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 216 (251)
+ .+|++|||||||++||+.+++.++++|+++. + |.|||++|||++++.++||++++|++|+++..|+++
T Consensus 161 ~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (272)
T PRK13547 161 AQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPA 240 (272)
T ss_pred hccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence 9 5999999999999999999999999999984 4 899999999999999999999999999999999876
Q ss_pred HH
Q psy7367 217 FL 218 (251)
Q Consensus 217 ~~ 218 (251)
.+
T Consensus 241 ~~ 242 (272)
T PRK13547 241 DV 242 (272)
T ss_pred HH
Confidence 55
No 172
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-55 Score=355.01 Aligned_cols=219 Identities=24% Similarity=0.396 Sum_probs=201.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----------C-
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----------D- 68 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----------~- 68 (251)
++++|+.|+|| ...+|++|||+-.+|+++.|||.+||||||+||||+-|..|+.|.|.++|+.+.. .
T Consensus 7 l~v~dlHK~~G-~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~ 85 (256)
T COG4598 7 LEVEDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADK 85 (256)
T ss_pred eehhHHHhhcc-cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence 56889999996 4889999999999999999999999999999999999999999999999998731 1
Q ss_pred --hHHhhcceEEEccCCCCCCCCCHHHHHHH-HHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHH
Q psy7367 69 --MTTIRRSLGVCPQYNALFDKLTVEEHMWF-YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM 145 (251)
Q Consensus 69 --~~~~~~~i~~v~q~~~l~~~ltv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~ 145 (251)
...+|.+.++|||+.+|+.+|||.||+.- +....+.++.++.++++.+|.++|+.+..+.+|..|||||+||++|||
T Consensus 86 ~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIAR 165 (256)
T COG4598 86 RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIAR 165 (256)
T ss_pred HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHH
Confidence 12457789999999999999999999865 344567888889999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
||+.+|+++|+|||||+|||+..-++++.++++. +|+|.+++||.|.++...+.+++++++|.|-++|+|+.+..
T Consensus 166 aLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~ 241 (256)
T COG4598 166 ALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFG 241 (256)
T ss_pred HHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhc
Confidence 9999999999999999999999999999999996 59999999999999999999999999999999999987643
No 173
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.1e-53 Score=360.82 Aligned_cols=200 Identities=26% Similarity=0.425 Sum_probs=178.6
Q ss_pred EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC--C---hHHhhcceE
Q psy7367 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT--D---MTTIRRSLG 77 (251)
Q Consensus 3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--~---~~~~~~~i~ 77 (251)
++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . ....++.++
T Consensus 1 i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGD-KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECC-EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 5799999964 689999999999999999999999999999999999999999999999998642 1 123467899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
|++|++.+++.+|++||+.+.....+.......+++.++++.+++.+..++++.+||+|||||++|||||+.+|++||||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD 159 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD 159 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999998999999998655444444455667899999999998899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII 204 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l 204 (251)
|||+|||+.+++.+.++|+++. +|.|||++||+++.+ .+||++++|
T Consensus 160 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 160 EPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 9999999999999999999985 589999999999976 579999875
No 174
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-53 Score=366.61 Aligned_cols=217 Identities=25% Similarity=0.420 Sum_probs=186.7
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++. +++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5799999999642 279999999999999999999999999999999999999999999999998753 33455678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p 151 (251)
+||++.+++ .|++||+.++.... ......+ .+.++++.+ ++.+..++++.+||+|||||++|||||+.+|
T Consensus 81 ~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 157 (234)
T cd03251 81 VSQDVFLFN-DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP 157 (234)
T ss_pred eCCCCeecc-ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999998886 69999998754321 1111111 245666666 6777788899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+++||||||+|||+.+++.+.+.|+++.++.|||++||+++++.. ||++++|++|+++..++++++...
T Consensus 158 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 158 PILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHHc
Confidence 999999999999999999999999998778999999999999976 999999999999999988766443
No 175
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-53 Score=375.68 Aligned_cols=217 Identities=24% Similarity=0.330 Sum_probs=189.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ....+
T Consensus 40 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~ 118 (286)
T PRK14275 40 VVAKNFSIYYGE-FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLL 118 (286)
T ss_pred EEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHh
Confidence 478999999964 679999999999999999999999999999999999864 499999999998742 12245
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+++. ||.||+.+.....+.. .....+++.++++.+++. +..++++.+||||||||++|||||
T Consensus 119 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL 197 (286)
T PRK14275 119 RKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTL 197 (286)
T ss_pred hhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHH
Confidence 6789999999998875 9999999865543332 233345678889999873 566889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|++|||||||+|||+.+++.+.++|++++++.|||++|||++++..+|||+++|++|+++..|++..+.
T Consensus 198 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 198 AVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999876789999999999999999999999999999999987654
No 176
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2e-53 Score=364.59 Aligned_cols=211 Identities=24% Similarity=0.416 Sum_probs=185.8
Q ss_pred CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCeeEEEEcceeCCCChHHhhc
Q psy7367 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP---VSSGTAKIYNHDIRTDMTTIRR 74 (251)
Q Consensus 1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 74 (251)
+.++|++++|++. +++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.. ..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~--~~~~~ 81 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP--DQFQK 81 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh--HHhcc
Confidence 4689999999643 579999999999999999999999999999999999999 999999999998742 34577
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcC---CChHHHHHHHHH-HHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367 75 SLGVCPQYNALFDKLTVEEHMWFYSQLKQ---VPKDLAQLEISN-MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGG 150 (251)
Q Consensus 75 ~i~~v~q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~ 150 (251)
.++|+||++.+++.+|+.||+.+...... ........++.+ +++.+++.+..++.+.+||+||+||++|||||+.+
T Consensus 82 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 161 (226)
T cd03234 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD 161 (226)
T ss_pred cEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence 89999999999999999999998654322 111222234555 89999999888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCH-HHHHhhcCEEEEeeCCEEEeec
Q psy7367 151 SRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYM-DEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 151 p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~-~~~~~~~d~i~~l~~G~i~~~g 213 (251)
|+++||||||+|||+.++..+.+++++++ ++.|||++||++ +++..+||++++|++|++++.|
T Consensus 162 p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 162 PKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999985 589999999999 6899999999999999998764
No 177
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-53 Score=370.03 Aligned_cols=217 Identities=23% Similarity=0.407 Sum_probs=190.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|++++|+ ++.+|+++||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++.. ....+
T Consensus 8 l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (259)
T PRK14260 8 IKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL 86 (259)
T ss_pred EEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence 57899999996 46799999999999999999999999999999999999985 48999999998742 22345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
+++++|+||++.+|+ +|++||+.+....++ .+.....+.+.++++.+++. +..++++.+||+|||||++|||||
T Consensus 87 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 165 (259)
T PRK14260 87 RRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL 165 (259)
T ss_pred hhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 678999999999887 899999987654432 23334445678889999883 467889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee-----CCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA-----AGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~-----~G~i~~~g~~~~~~ 219 (251)
+.+|+++||||||+|||+.++..++++|++++++.|||++||+++++..+||++++|+ +|+++..|++.++.
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 166 AIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 9999999999999999999999999999998767999999999999999999999998 59999999987763
No 178
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-54 Score=406.46 Aligned_cols=216 Identities=22% Similarity=0.377 Sum_probs=192.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hH-HhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MT-TIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~-~~~~~i~~ 78 (251)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... .. ..+++++|
T Consensus 6 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 84 (510)
T PRK09700 6 ISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGI 84 (510)
T ss_pred EEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEE
Confidence 57899999996 47899999999999999999999999999999999999999999999999998542 22 23467999
Q ss_pred EccCCCCCCCCCHHHHHHHHHH----hcCC---ChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQ----LKQV---PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~----~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p 151 (251)
+||++.+++.+||+||+.+... .++. ...+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p 164 (510)
T PRK09700 85 IYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDA 164 (510)
T ss_pred EeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999987532 1121 22344567889999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 217 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 217 (251)
++|||||||+|||+.++..++++|++++ +|.|||++|||++++..+||++++|++|++++.|++++
T Consensus 165 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 9999999999999999999999999985 58999999999999999999999999999999988754
No 179
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-53 Score=368.25 Aligned_cols=217 Identities=24% Similarity=0.358 Sum_probs=189.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP--V---SSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~--p---~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++.. .....
T Consensus 7 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (253)
T PRK14261 7 LSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVAL 85 (253)
T ss_pred EEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhh
Confidence 57899999996 4789999999999999999999999999999999999975 3 48999999998853 22345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+|+. ||+||+.+....++. .....++.+.++++.+++. ...++++.+||+|||||++|||||
T Consensus 86 ~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14261 86 RRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL 164 (253)
T ss_pred hceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence 6789999999998874 999999987654432 2233445678889998874 346789999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|+++||||||+|||+.+++.+.++|++++++.|||++||+++++..+||++++|++|+++..|+++.+.
T Consensus 165 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 165 AVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999876799999999999999999999999999999999987664
No 180
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-53 Score=372.48 Aligned_cols=218 Identities=27% Similarity=0.370 Sum_probs=191.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCCC--hHHhh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRTD--MTTIR 73 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~~--~~~~~ 73 (251)
|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|.++... ...++
T Consensus 22 l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~ 100 (276)
T PRK14271 22 MAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFR 100 (276)
T ss_pred EEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHh
Confidence 47899999996 47899999999999999999999999999999999999985 799999999987532 23457
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
+.++|+||++.+|+ +|++||+.+...... ....+....+.++++.+++.. ..++.+.+||||||||++|||||+
T Consensus 101 ~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~ 179 (276)
T PRK14271 101 RRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA 179 (276)
T ss_pred hheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 78999999999887 799999987654322 233444456778899999864 457889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
.+|++|||||||++||+.+++.+.+.|++++++.|||++||+++++..+|||+++|++|+++..|+++.+.+
T Consensus 180 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 180 VNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999998666899999999999999999999999999999999876643
No 181
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-53 Score=372.41 Aligned_cols=217 Identities=23% Similarity=0.370 Sum_probs=188.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. ....+
T Consensus 25 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 103 (271)
T PRK14238 25 FDTQNLNLWYGE-DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEEL 103 (271)
T ss_pred EEEeeeEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHH
Confidence 578999999964 679999999999999999999999999999999999987 699999999998742 23345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcC----CCcccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLG----IPHKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~----l~~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+|+ .|++||+.+.....+.. .......+.++++.++ +.+..++++.+||||||||++|||||
T Consensus 104 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL 182 (271)
T PRK14238 104 RTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL 182 (271)
T ss_pred hhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 678999999999887 59999998865443322 2223445677787775 44566889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|++|||||||+|||+.++..+.++|+++.++.|||++|||++++..+||++++|++|+++..|++.++.
T Consensus 183 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 183 AIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999876899999999999999999999999999999999987653
No 182
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3e-53 Score=362.12 Aligned_cols=208 Identities=26% Similarity=0.447 Sum_probs=185.4
Q ss_pred CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-C---hHHhh
Q psy7367 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-D---MTTIR 73 (251)
Q Consensus 1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~---~~~~~ 73 (251)
++++|+++.|+++ +.+|+++||++++|++++|+||||||||||+++|+|+++|++|+|+++|+++.. . ....+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 5789999999632 579999999999999999999999999999999999999999999999998743 1 12356
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
+.++|+||++.+++.+|+.||+.+...... ....+..+++.++++.+++.+..++++.+||+|||||++|||||+.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ 161 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK 161 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 789999999999998999999998765442 3344455678999999999988999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i 209 (251)
++||||||+|||+.+++.++++|+++. .++|||++||+++. ..+||++++|++|++
T Consensus 162 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 162 LVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMEDGKL 219 (220)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence 999999999999999999999999984 38999999999985 479999999999986
No 183
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-53 Score=373.99 Aligned_cols=216 Identities=21% Similarity=0.352 Sum_probs=189.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++.. ....+
T Consensus 40 l~i~~l~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~ 118 (285)
T PRK14254 40 IEARDLNVFYGD-EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVAL 118 (285)
T ss_pred EEEEEEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhh
Confidence 478999999964 679999999999999999999999999999999999987 689999999998742 22345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
+++++|+||++.+|+. |+.||+.+.....+... ...+++.++++.+++. +..++++.+||||||||++|||||+
T Consensus 119 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~ 196 (285)
T PRK14254 119 RRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA 196 (285)
T ss_pred hccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 6789999999988875 99999988765544332 3455788999999985 4568899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEE-EeeCCEEEeecCHHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIA-IIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~ 219 (251)
.+|++|||||||+|||+.+++.+.++|++++++.|||++|||++++..+|||++ +|++|+++..|++..+.
T Consensus 197 ~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 197 PDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999998666899999999999999999975 67999999999876653
No 184
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.1e-53 Score=404.16 Aligned_cols=213 Identities=23% Similarity=0.426 Sum_probs=191.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHh-hcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTI-RRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~-~~~i~~ 78 (251)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. ..... ++.++|
T Consensus 12 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 90 (510)
T PRK15439 12 LCARSISKQYSG-VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYL 90 (510)
T ss_pred EEEEeEEEEeCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 578999999964 779999999999999999999999999999999999999999999999998854 22222 357999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
+||++.+++.+||+||+.+.... ....++++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 91 v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE 166 (510)
T PRK15439 91 VPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE 166 (510)
T ss_pred EeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999885421 12344678899999999988999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 159 PTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
||+|||+.++..++++|++++ +|.|||++|||++++..+||++++|++|+++..|+++++
T Consensus 167 Pt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 167 PTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 999999999999999999985 589999999999999999999999999999999987644
No 185
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-53 Score=410.89 Aligned_cols=219 Identities=22% Similarity=0.350 Sum_probs=194.2
Q ss_pred CEEEeEEEEeCC----------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h
Q psy7367 1 MAIQNLSKRFPN----------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M 69 (251)
Q Consensus 1 l~i~~l~~~y~~----------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~ 69 (251)
|+++||++.|+. .+.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... .
T Consensus 314 L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~ 393 (623)
T PRK10261 314 LQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSP 393 (623)
T ss_pred EEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCH
Confidence 478999999952 14699999999999999999999999999999999999999999999999988532 1
Q ss_pred ---HHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHH
Q psy7367 70 ---TTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLS 142 (251)
Q Consensus 70 ---~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ 142 (251)
..++++|+|+||++ .+++.+||.||+.+....++. ...+..+++.++++.++|. ...++++.+|||||||||+
T Consensus 394 ~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~ 473 (623)
T PRK10261 394 GKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRIC 473 (623)
T ss_pred HHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHH
Confidence 23467899999997 588899999999886654443 2344556789999999996 6789999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 143 VAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 143 ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||||+.+|++|||||||++||+.++..++++|++++ + |.|||++|||++++..+|||+++|++|++++.|+++++.
T Consensus 474 iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 474 IARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999984 4 899999999999999999999999999999999987653
No 186
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-53 Score=370.44 Aligned_cols=217 Identities=26% Similarity=0.392 Sum_probs=190.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~ 72 (251)
++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++.. ....+
T Consensus 26 l~~~nl~~~~~~-~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~ 104 (272)
T PRK14236 26 LEVRNLNLFYGD-KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAEL 104 (272)
T ss_pred EEEEEEEEEECC-eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHH
Confidence 478999999964 679999999999999999999999999999999999987 489999999998853 22345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+|+. |++||+.+.....+. ......+++.++++.+++. +..++++.+||||||||++|||||
T Consensus 105 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 183 (272)
T PRK14236 105 RRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAI 183 (272)
T ss_pred hccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 7789999999998885 999999876544432 2223345688899999985 356788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|+++||||||+|||+.++..++++|++++++.|||++||+++++.++||++++|++|+++..|+++++.
T Consensus 184 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 184 AIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 999999999999999999999999999999876899999999999999999999999999999999877653
No 187
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-53 Score=366.28 Aligned_cols=217 Identities=24% Similarity=0.397 Sum_probs=188.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP--V---SSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~--p---~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|++++|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+.+ | ++|+|+++|+++.. ....+
T Consensus 6 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14255 6 ITSSDVHLFYGK-FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQL 84 (252)
T ss_pred EEEEeEEEEECC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHh
Confidence 478999999964 789999999999999999999999999999999999875 5 59999999998742 22345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+++ .|++||+.+.....+.. .....+++.++++.+++. +..++++.+||+|||||++|||||
T Consensus 85 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral 163 (252)
T PRK14255 85 RKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL 163 (252)
T ss_pred cCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence 678999999999887 69999998865544332 222344567788888763 456789999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|+++||||||+|||+.+++.+.++|++++++.|||++||+++++.++||++++|++|+++..|++....
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 164 AVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999866789999999999999999999999999999999886653
No 188
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-53 Score=363.80 Aligned_cols=216 Identities=27% Similarity=0.369 Sum_probs=181.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
|+++|++++|++.+.+++++||+|++|++++|+|||||||||||++|+|+++|++|+|+++|.++.. ....+++.++|+
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence 5789999999643569999999999999999999999999999999999999999999999998753 334567789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
||++.+++. |++||+.++.... ......+ .+.++++.+ ++....++++.+||+||||||+|||||+.+|+
T Consensus 83 ~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 83 LQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred cCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999988875 9999998753221 1111111 123344444 55556667789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
++||||||+|||+.+++.++++|.+++++.|||++||+++++. .||++++|++|+++..++.+.+..
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999867899999999999996 499999999999999888765543
No 189
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=7.3e-53 Score=367.31 Aligned_cols=215 Identities=21% Similarity=0.340 Sum_probs=187.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CeeEEEEcceeCCCChHHhhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV----SSGTAKIYNHDIRTDMTTIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~i 76 (251)
|+++|++++| + +++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. ....++.+
T Consensus 5 l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~-~~~~~~~i 81 (254)
T PRK10418 5 IELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP-CALRGRKI 81 (254)
T ss_pred EEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc-cccccceE
Confidence 5789999999 4 5799999999999999999999999999999999999999 99999999998852 22234679
Q ss_pred EEEccCCC--CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc---ccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367 77 GVCPQYNA--LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH---KRTSLANTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 77 ~~v~q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~kqrv~ia~al~~~p 151 (251)
+|+||++. +.+.+|+.+++.+.....+... ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p 159 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEA 159 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCC
Confidence 99999974 4456799999877544333322 2356889999999986 568899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
++|||||||+|||+.+++.++++|+++. + |.|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 160 ~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 160 PFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 9999999999999999999999999984 4 8999999999999999999999999999999999876643
No 190
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-53 Score=369.34 Aligned_cols=217 Identities=24% Similarity=0.338 Sum_probs=188.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.. ....+
T Consensus 11 l~i~~v~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 89 (264)
T PRK14243 11 LRTENLNVYYGS-FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV 89 (264)
T ss_pred EEEeeeEEEECC-EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHH
Confidence 478999999964 689999999999999999999999999999999999976 489999999998742 23345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
++.++|+||++.+++ .|+.||+.+.....+.. ....+++.++++.+++. +..++++.+||||||||++|||||+
T Consensus 90 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~ 167 (264)
T PRK14243 90 RRRIGMVFQKPNPFP-KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA 167 (264)
T ss_pred hhhEEEEccCCcccc-ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 778999999998887 49999998865443322 22334567778888874 3567889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee---------CCEEEeecCHHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA---------AGKLQCCGSSVFLK 219 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~---------~G~i~~~g~~~~~~ 219 (251)
.+|++|||||||+|||+.++..++++|.++.++.|||++||+++++.++|||+++|+ +|++++.|+++++.
T Consensus 168 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 168 VQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 999999999999999999999999999998767899999999999999999999998 89999999987764
Q ss_pred h
Q psy7367 220 N 220 (251)
Q Consensus 220 ~ 220 (251)
.
T Consensus 248 ~ 248 (264)
T PRK14243 248 N 248 (264)
T ss_pred h
Confidence 3
No 191
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-52 Score=367.02 Aligned_cols=218 Identities=23% Similarity=0.407 Sum_probs=190.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----eeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-----SGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. ....+
T Consensus 8 l~~~nl~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~ 86 (261)
T PRK14258 8 IKVNNLSFYYDT-QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRL 86 (261)
T ss_pred EEEeeEEEEeCC-eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHh
Confidence 578999999964 67999999999999999999999999999999999999985 8999999998732 22345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++.++|+||++.+++ +|++||+.+.....+. +..+..+++.++++.+++. +..++++.+||||||||++|||||
T Consensus 87 ~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 165 (261)
T PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL 165 (261)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 678999999998887 8999999886544332 2333345678899999874 356889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeC-----CEEEeecCHHHHHh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAA-----GKLQCCGSSVFLKN 220 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~-----G~i~~~g~~~~~~~ 220 (251)
+.+|++|||||||+|||+.++..++++|++++ ++.|||++|||++++.++|||+++|++ |+++..|+++++..
T Consensus 166 ~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFN 245 (261)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHh
Confidence 99999999999999999999999999999974 489999999999999999999999999 99999999887643
No 192
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.4e-53 Score=362.26 Aligned_cols=205 Identities=27% Similarity=0.412 Sum_probs=177.3
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|+++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|+++|+++.. ....+++.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 5789999999632 569999999999999999999999999999999999999999999999998743 23345678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCC-----------CcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA-----------NTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~kqrv~ia~al 147 (251)
+||++.+++ .|+.||+.++... .. .+++.++++.+++.+..++.+ .+||||||||++|||||
T Consensus 83 ~~q~~~~~~-~tv~e~l~~~~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al 155 (220)
T cd03245 83 VPQDVTLFY-GTLRDNITLGAPL--AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155 (220)
T ss_pred eCCCCcccc-chHHHHhhcCCCC--CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence 999998886 6999999774321 11 234567788888877666544 69999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
+.+|++|||||||+|||+.++..++++|++++++.|||++|||++++ ++||++++|++|+++..|
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999986568999999999987 699999999999997653
No 193
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1e-52 Score=369.28 Aligned_cols=219 Identities=20% Similarity=0.277 Sum_probs=192.2
Q ss_pred CEEEeEEEEeCC--------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h--
Q psy7367 1 MAIQNLSKRFPN--------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M-- 69 (251)
Q Consensus 1 l~i~~l~~~y~~--------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~-- 69 (251)
|+++||+++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 478999999962 36799999999999999999999999999999999999999999999999987531 1
Q ss_pred -HHhhcceEEEccCC--CCCCCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHH
Q psy7367 70 -TTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVA 144 (251)
Q Consensus 70 -~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia 144 (251)
..+++.++|+||++ .+++..|+.+|+.+.... ..........++.++++.+++. ...++++.+||+|||||++||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~la 163 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLA 163 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHH
Confidence 23567899999997 466778999999765432 2333444455789999999997 578899999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 145 MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 145 ~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++||+++++..+||++++|++|+++..|+++++.
T Consensus 164 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 164 RALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 99999999999999999999999999999999985 4 899999999999999999999999999999999887654
No 194
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.7e-53 Score=395.39 Aligned_cols=221 Identities=24% Similarity=0.401 Sum_probs=197.4
Q ss_pred CEEEeEEEEeCC------C----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC--C-
Q psy7367 1 MAIQNLSKRFPN------G----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR--T- 67 (251)
Q Consensus 1 l~i~~l~~~y~~------~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~--~- 67 (251)
++++||+|.|.. + ..+++||||++.+||++||+|+||||||||.|+|+|+++|++|+|.++|.+.. .
T Consensus 281 l~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~ 360 (539)
T COG1123 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGG 360 (539)
T ss_pred eEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccc
Confidence 469999999962 1 36899999999999999999999999999999999999999999999998732 1
Q ss_pred ChHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHH
Q psy7367 68 DMTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSV 143 (251)
Q Consensus 68 ~~~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~i 143 (251)
.....++++-++||+| .|.|.+||.+++...+.+++.. ..+.++++.++++.++|.. .++++|++||||||||++|
T Consensus 361 ~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaI 440 (539)
T COG1123 361 ELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAI 440 (539)
T ss_pred hhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHH
Confidence 2334567889999987 7899999999999988765432 4555667999999999986 7899999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
||||+.+|++|++|||||+||+..+.+++++|++++ + |.|.|+||||+..+..+||||++|++|+|++.|+.+.+.+.
T Consensus 441 ARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~ 520 (539)
T COG1123 441 ARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520 (539)
T ss_pred HHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999996 4 99999999999999999999999999999999988776554
No 195
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.1e-53 Score=356.96 Aligned_cols=200 Identities=23% Similarity=0.300 Sum_probs=180.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.......+++++|++
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 2 LEARNLACERDE-RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred eEEEEEEEEECC-EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 579999999964 7899999999999999999999999999999999999999999999999988543345567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+|+.||+.++...++. ...++++++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 157 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF 157 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 999999999999999987654432 22356889999999998889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII 204 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l 204 (251)
++||+.+++.++++|++++ ++.|||++|||++++....+|++++
T Consensus 158 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 158 TAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999985 5899999999999999877888776
No 196
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-52 Score=365.57 Aligned_cols=218 Identities=22% Similarity=0.353 Sum_probs=190.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcc------eeCCC-ChHHhh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN------HDIRT-DMTTIR 73 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g------~~~~~-~~~~~~ 73 (251)
++++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++| +++.. ....++
T Consensus 11 i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~ 89 (257)
T PRK14246 11 FNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLR 89 (257)
T ss_pred eeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHh
Confidence 47899999996 47899999999999999999999999999999999999999997776665 44432 233567
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
+.++|+||++.+++.+|++||+.+.....+. ...+..+++.++++.+++. +..++++..||+|||||++|||||+
T Consensus 90 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 169 (257)
T PRK14246 90 KEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALA 169 (257)
T ss_pred cceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 8899999999999989999999987543332 2334456788999999996 3567899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
.+|+++||||||+|||+.++..+.++|.+++++.|||++||+++++..+||++++|++|+++..|+++++.
T Consensus 170 ~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 170 LKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999876799999999999999999999999999999999887654
No 197
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.5e-52 Score=364.83 Aligned_cols=218 Identities=22% Similarity=0.359 Sum_probs=187.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee-----CCC-ChHH---
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD-----IRT-DMTT--- 71 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~-----~~~-~~~~--- 71 (251)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++ +.. ....
T Consensus 4 l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 4 LQVSGLSKSYGG-GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred EEEeeeEEEeCC-ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence 578999999964 679999999999999999999999999999999999999999999999976 532 2211
Q ss_pred -hhcceEEEccCCC--CCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHH
Q psy7367 72 -IRRSLGVCPQYNA--LFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 72 -~~~~i~~v~q~~~--l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~a 146 (251)
+++.++|+||++. +++.+|+.+|+.+...... .......+.+.++++.+++. ...++++.+|||||||||+||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lara 162 (253)
T TIGR02323 83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARN 162 (253)
T ss_pred hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHH
Confidence 2457999999974 4556789999976432111 11223345788999999997 57889999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|+.+|++|||||||++||+.+++.++++|.++. + |.|||++||+++++..+||++++|++|+++..|+++.+.
T Consensus 163 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 163 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999874 4 899999999999999999999999999999999877654
No 198
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=8e-53 Score=363.22 Aligned_cols=216 Identities=26% Similarity=0.424 Sum_probs=182.1
Q ss_pred CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~ 77 (251)
++++|++++|++ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ....+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 589999999963 2469999999999999999999999999999999999999999999999998743 2334567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGG 150 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~ 150 (251)
|+||++.+++ .|++||+.+..... ....... .+.++++.+ ++....++++.+|||||||||+|||||+.+
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~ 157 (238)
T cd03249 81 LVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN 157 (238)
T ss_pred EECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence 9999998886 69999998753221 1111111 123334444 566667788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 151 SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
|+++||||||+|||+.+++.+++.|+++++|+|||++||+++++. +||++++|++|++++.++.+.+..
T Consensus 158 p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999999999999999999998877899999999999997 899999999999999998766543
No 199
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-52 Score=368.44 Aligned_cols=216 Identities=24% Similarity=0.350 Sum_probs=187.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. ....+
T Consensus 21 l~~~nl~~~~~~-~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~ 99 (274)
T PRK14265 21 FEVEGVKVFYGG-FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKL 99 (274)
T ss_pred EEEeeEEEEeCC-eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHH
Confidence 478999999964 6799999999999999999999999999999999999863 69999999998742 22345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
+++|+|+||++.+++. |+.||+.+.....+.. ....+.+.++++.+++. +..++++.+|||||||||+|||||+
T Consensus 100 ~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 177 (274)
T PRK14265 100 RRQVGMVFQRPNPFPK-SIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA 177 (274)
T ss_pred hhcEEEEccCCccccc-cHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 6789999999988874 9999998865433322 12234567788888863 4567899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee---------CCEEEeecCHHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA---------AGKLQCCGSSVFLK 219 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~---------~G~i~~~g~~~~~~ 219 (251)
.+|++|||||||+|||+.++..+.++|.+++++.|||++|||++++.++|||+++|+ +|+++..|+++++.
T Consensus 178 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 178 MKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 999999999999999999999999999998767999999999999999999999997 89999999987664
No 200
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1e-52 Score=400.24 Aligned_cols=218 Identities=23% Similarity=0.351 Sum_probs=191.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCeeEEEEc-----------------
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML--PVSSGTAKIY----------------- 61 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~--~p~~G~i~~~----------------- 61 (251)
|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+|+|+|++ +|++|+|+++
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 68999999996 468999999999999999999999999999999999997 7999999997
Q ss_pred ------ceeCC-------C-C---hHHhhcceEEEccC-CCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC
Q psy7367 62 ------NHDIR-------T-D---MTTIRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP 123 (251)
Q Consensus 62 ------g~~~~-------~-~---~~~~~~~i~~v~q~-~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 123 (251)
|.++. . . ...+++.++|+||+ +.+++.+|++||+.+.....+.+..+..+++.++++.++|.
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 22221 0 0 12345689999997 67888899999999876555555555567889999999999
Q ss_pred cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEE
Q psy7367 124 HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRI 201 (251)
Q Consensus 124 ~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i 201 (251)
+..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.++++|+++ ++ |.|||+||||++.+..+||++
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i 239 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKA 239 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 8889999999999999999999999999999999999999999999999999998 44 899999999999999999999
Q ss_pred EEeeCCEEEeecCHHHHH
Q psy7367 202 AIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 202 ~~l~~G~i~~~g~~~~~~ 219 (251)
++|++|+++..|+++.+.
T Consensus 240 ~~l~~G~i~~~g~~~~~~ 257 (520)
T TIGR03269 240 IWLENGEIKEEGTPDEVV 257 (520)
T ss_pred EEEeCCEEeeecCHHHHH
Confidence 999999999988876543
No 201
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=8.6e-53 Score=360.74 Aligned_cols=209 Identities=21% Similarity=0.313 Sum_probs=181.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
|+++|++++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+++.++|+
T Consensus 8 i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 86 (225)
T PRK10247 8 LQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYC 86 (225)
T ss_pred EEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEE
Confidence 57899999996 4789999999999999999999999999999999999999999999999998753 333456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
||++.+++ .|++||+.+....++... ..+++.++++.+++. ...++++.+||+||+||++|||||+.+|+++||||
T Consensus 87 ~q~~~l~~-~tv~enl~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (225)
T PRK10247 87 AQTPTLFG-DTVYDNLIFPWQIRNQQP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE 163 (225)
T ss_pred eccccccc-ccHHHHHHhHHhhcCCCh--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999887 499999988654433221 234578899999996 57889999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEee-CCEEEeecC
Q psy7367 159 PTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIA-AGKLQCCGS 214 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~-~G~i~~~g~ 214 (251)
||+|||+.+++.+.++|.++. + |.|||++||+++++. .||++++|+ ++..+.+|+
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 164 ITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence 999999999999999999984 3 899999999999996 699999995 455555554
No 202
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-53 Score=398.22 Aligned_cols=214 Identities=25% Similarity=0.380 Sum_probs=190.7
Q ss_pred EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhhcceEEEc
Q psy7367 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIRRSLGVCP 80 (251)
Q Consensus 3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~i~~v~ 80 (251)
++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ...+++.++|+|
T Consensus 1 ~~nl~~~~~~-~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFPG-VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeCC-EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 4799999964 7899999999999999999999999999999999999999999999999988532 233467899999
Q ss_pred cCCCCCCCCCHHHHHHHHHH-hcC--CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 81 QYNALFDKLTVEEHMWFYSQ-LKQ--VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
|++.+++.+||+||+.+... ..+ ....+..+++.++++.+++....++++.+|||||||||+|||||+.+|++||||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD 159 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 99999999999999987532 112 123344567889999999998889999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 217 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 217 (251)
|||+|||+.+++.++++|++++ +|.|||++|||++++..+||++++|++|+++..|+++.
T Consensus 160 EPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 160 EPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhh
Confidence 9999999999999999999985 58999999999999999999999999999999988654
No 203
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-52 Score=362.26 Aligned_cols=217 Identities=23% Similarity=0.368 Sum_probs=190.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~ 72 (251)
++++||++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++.. .....
T Consensus 4 l~~~~v~~~~~~-~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 4 IEVENLNTYFDD-AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEeEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 478999999964 679999999999999999999999999999999999864 489999999998753 23355
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
+++++|+||++.+|+. |+.||+.+.....+. ......+++.++++.+++. ...++++.+||+|||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 83 RKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred hhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 7789999999998875 999999876543332 2233456788899999884 346788999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|++|||||||+|||+.++..+.++|++++++.|||++||+++++..+||++++|++|++++.|+++.+.
T Consensus 162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 162 AVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999877899999999999999999999999999999999987663
No 204
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-52 Score=364.14 Aligned_cols=216 Identities=26% Similarity=0.367 Sum_probs=189.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~---~~~~~ 72 (251)
+.+++++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. ....+
T Consensus 9 ~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~ 87 (261)
T PRK14263 9 MDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVV 87 (261)
T ss_pred EEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhh
Confidence 46889999996 47899999999999999999999999999999999999986 79999999998742 22345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc----ccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH----KRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
++.++|+||++.+| .+|+.||+.+.....+. ..+..+++.++++.+++.+ ..++++.+||+||+||++|||||+
T Consensus 88 ~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~ 165 (261)
T PRK14263 88 RRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA 165 (261)
T ss_pred hhceEEEecCCccc-cccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 67899999999888 58999999987654432 2234457889999999854 346788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee--------CCEEEeecCHHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA--------AGKLQCCGSSVFLK 219 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~--------~G~i~~~g~~~~~~ 219 (251)
.+|++|||||||+|||+.++..++++|++++++.|||++||+++++..+|||+++|+ +|++++.|+++++.
T Consensus 166 ~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 166 TEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 999999999999999999999999999998768999999999999999999999996 89999999987664
No 205
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.5e-52 Score=360.18 Aligned_cols=203 Identities=22% Similarity=0.331 Sum_probs=179.1
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CeeEEEEcceeCCCChHHhhcceEEEccCCC--CCCCC
Q psy7367 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV----SSGTAKIYNHDIRTDMTTIRRSLGVCPQYNA--LFDKL 89 (251)
Q Consensus 16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~--l~~~l 89 (251)
+++|+||+|++|++++|+||||||||||+|+|+|+++| ++|+|+++|+++... ...++.++|+||++. +++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-hhhhheeEEEecCchhhcCccc
Confidence 57999999999999999999999999999999999999 899999999987532 222358999999984 55678
Q ss_pred CHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC---cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q psy7367 90 TVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP---HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166 (251)
Q Consensus 90 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~ 166 (251)
|+.+|+.+.....+.......+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 9999998765443333334456789999999998 5678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 167 SRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 167 ~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
++..+.++|++++ + |+|||++||+++++..+||++++|++|+++..|+++++.
T Consensus 160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999985 3 899999999999999999999999999999999987664
No 206
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-52 Score=397.84 Aligned_cols=213 Identities=23% Similarity=0.399 Sum_probs=190.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~i~~ 78 (251)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ...++++|+|
T Consensus 5 l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~ 83 (501)
T PRK11288 5 LSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAI 83 (501)
T ss_pred EEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEE
Confidence 57899999996 46799999999999999999999999999999999999999999999999988532 2345678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHH--hcC-CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQ--LKQ-VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~--~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
+||++.+++.+||.||+.++.. ..+ ....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus 84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 163 (501)
T PRK11288 84 IYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIA 163 (501)
T ss_pred EEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999999988542 112 2334445678899999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~ 214 (251)
|||||++||+.+++.++++|++++ +|.|||++|||++++..+|||+++|++|+++..++
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 164 FDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 999999999999999999999985 58999999999999999999999999999987664
No 207
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-52 Score=368.55 Aligned_cols=215 Identities=21% Similarity=0.363 Sum_probs=183.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...++.++|+|
T Consensus 7 l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~~~~~i~~v~ 84 (272)
T PRK15056 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ--ALQKNLVAYVP 84 (272)
T ss_pred EEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH--hhccceEEEec
Confidence 5789999999534679999999999999999999999999999999999999999999999998742 11234699999
Q ss_pred cCCCCC--CCCCHHHHHHHHHH----hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367 81 QYNALF--DKLTVEEHMWFYSQ----LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV 154 (251)
Q Consensus 81 q~~~l~--~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll 154 (251)
|++.+. ...++++++.+... ..........+++.++++.+++.+..++++.+||||||||++|||||+.+|++|
T Consensus 85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 998652 23478888865321 111122233456788999999998899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 155 ILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 155 llDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
||||||+|||+.+++.+.++|++++ +|.|||++|||++++..+||+++++ +|+++..|+++++
T Consensus 165 llDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999985 5899999999999999999999877 8999999988764
No 208
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.2e-53 Score=342.22 Aligned_cols=211 Identities=25% Similarity=0.382 Sum_probs=191.4
Q ss_pred CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC----hHHhh
Q psy7367 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD----MTTIR 73 (251)
Q Consensus 1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~ 73 (251)
|+++++++..+.+ ..||++|+|.|++||-++|+|||||||||||-+++|+..|++|+|++.|+++..- ...+|
T Consensus 7 i~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R 86 (228)
T COG4181 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALR 86 (228)
T ss_pred eehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhh
Confidence 4677888877532 4699999999999999999999999999999999999999999999999998642 22333
Q ss_pred -cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 74 -RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 74 -~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
+++|||||.+.|.|+||..||+..++.+.+....+....+.++|+.+||.+.++.+|.+|||||||||+|||||+..|+
T Consensus 87 ~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~ 166 (228)
T COG4181 87 ARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPD 166 (228)
T ss_pred ccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCC
Confidence 6899999999999999999999999999886666667778999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC 212 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~ 212 (251)
+|+.||||.+||...-+++.+++-.+. .|.|.|++|||...+.+ |+|++-|.+|+++.+
T Consensus 167 vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~~ 227 (228)
T COG4181 167 VLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVED 227 (228)
T ss_pred EEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceeccC
Confidence 999999999999999999999999884 39999999999999886 999999999999753
No 209
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.3e-52 Score=397.62 Aligned_cols=215 Identities=22% Similarity=0.387 Sum_probs=189.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEEcceeCCCC-hH-Hhhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV--SSGTAKIYNHDIRTD-MT-TIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~~-~~-~~~~~i 76 (251)
|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... .. ..++.+
T Consensus 2 l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 57999999996 47799999999999999999999999999999999999987 799999999988542 22 235679
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhc--C--CChHHHHHHHHHHHHHcCCCccc-CCCCCcCChhHHHHHHHHHHHccCC
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQLK--Q--VPKDLAQLEISNMIVDLGIPHKR-TSLANTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~~--~--~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgG~kqrv~ia~al~~~p 151 (251)
+|+||++.+++.+||.||+.+..... + ...+...+++.++++.+++.+.. ++++.+|||||||||+|||||+.+|
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p 160 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA 160 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 99999999999999999998864332 1 22334456788999999998764 6789999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 216 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 216 (251)
++|||||||+|||+.++..+.++|++++ +|.|||++|||++++..+||++++|++|+++..++++
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (500)
T TIGR02633 161 RLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMS 226 (500)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcc
Confidence 9999999999999999999999999985 5899999999999999999999999999999888764
No 210
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-52 Score=359.14 Aligned_cols=216 Identities=25% Similarity=0.410 Sum_probs=182.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|++++|++++.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ....+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 5799999999534679999999999999999999999999999999999999999999999998753 334556789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
||++.+++ .|+.||+.++... ........ .+.+.++.+ ++....++++.+||+|||||++|||||+.+|+
T Consensus 81 ~q~~~~~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 81 PQDTVLFN-DTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred CCCChhhc-chHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99998886 6999999875321 11111111 123344444 55566677889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
++||||||+|||+.++..+.++|.++++|.|||++||+++++.. ||++++|++|+++..|+.+++..
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999998669999999999999975 99999999999999988765543
No 211
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=5.1e-52 Score=361.07 Aligned_cols=217 Identities=21% Similarity=0.266 Sum_probs=186.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCeeEEEEcceeCCCC-hHHhhc-ce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM--LPVSSGTAKIYNHDIRTD-MTTIRR-SL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~~-~~~~~~-~i 76 (251)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|+++|.++... ....++ .+
T Consensus 8 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 86 (252)
T CHL00131 8 LEIKNLHASVNE-NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGI 86 (252)
T ss_pred EEEEeEEEEeCC-EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeE
Confidence 578999999964 6799999999999999999999999999999999998 579999999999988542 222222 58
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhc----C---CChHHHHHHHHHHHHHcCCC-cccCCCCC-cCChhHHHHHHHHHHH
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQLK----Q---VPKDLAQLEISNMIVDLGIP-HKRTSLAN-TLSGGMQRKLSVAMAF 147 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgG~kqrv~ia~al 147 (251)
+|+||++.+++.+|+.+|+.+..... . ....+..+++.++++.+++. ...++++. .||||||||++|||||
T Consensus 87 ~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al 166 (252)
T CHL00131 87 FLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMA 166 (252)
T ss_pred EEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHH
Confidence 99999999999999999998754321 1 11222345678899999997 46788887 5999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhh-cCEEEEeeCCEEEeecCHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~-~d~i~~l~~G~i~~~g~~~~~ 218 (251)
+.+|+++||||||+|||+.+++.++++|+++. +|.|||++|||++++..+ ||++++|++|+++..|+++..
T Consensus 167 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 167 LLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 99999999999999999999999999999985 589999999999999887 899999999999999988743
No 212
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.5e-52 Score=360.39 Aligned_cols=196 Identities=27% Similarity=0.419 Sum_probs=175.0
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHH
Q psy7367 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMW 96 (251)
Q Consensus 17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~ 96 (251)
|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ...+|+||++.+++.+|+.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC----hhheEEecCcccCCCCCHHHHHH
Confidence 57999999999999999999999999999999999999999999999875321 12489999999999999999998
Q ss_pred HHHH--hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy7367 97 FYSQ--LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174 (251)
Q Consensus 97 ~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~ 174 (251)
++.. .......+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 8642 12333444456788999999999888999999999999999999999999999999999999999999999999
Q ss_pred HHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367 175 LIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 216 (251)
Q Consensus 175 l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 216 (251)
|.++. + |.|||++|||++++..+||++++|++|+++..|++.
T Consensus 157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCce
Confidence 99974 4 899999999999999999999999999999888654
No 213
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.4e-52 Score=353.62 Aligned_cols=197 Identities=23% Similarity=0.311 Sum_probs=178.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.......+++++|+|
T Consensus 1 l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERDG-RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeCC-ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 689999999964 7899999999999999999999999999999999999999999999999987543345677899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+|++||+.++.... ..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 153 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADH------SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153 (201)
T ss_pred cccccCCCcCHHHHHHhhcccc------cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9999988899999998853211 2346788999999998889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII 204 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l 204 (251)
+|||+.+++.+.++|.+++ +|.|+|++||+......+|++++.+
T Consensus 154 ~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 154 TALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999885 5899999999999999999999877
No 214
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-52 Score=373.95 Aligned_cols=219 Identities=22% Similarity=0.369 Sum_probs=190.5
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHH
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTT 71 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~ 71 (251)
|+++|++++|.+ .+++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|+++.. ....
T Consensus 81 i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~ 160 (329)
T PRK14257 81 FEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLE 160 (329)
T ss_pred EEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHh
Confidence 478999999952 3579999999999999999999999999999999999986 579999999999852 2235
Q ss_pred hhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHH-HHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHHH
Q psy7367 72 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDL-AQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 72 ~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~-~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~a 146 (251)
+++.++|+||++.+|+ .|++||+.|+....+....+ ..+.+.++++.+++. ...++++.+||||||||++||||
T Consensus 161 lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARA 239 (329)
T PRK14257 161 LRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARA 239 (329)
T ss_pred hhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 6788999999999886 79999999865443333222 234467888888873 45678999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
|+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.++||||++|++|++++.|+++.+..
T Consensus 240 l~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~ 313 (329)
T PRK14257 240 IALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313 (329)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999998778999999999999999999999999999999999987643
No 215
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.5e-52 Score=396.55 Aligned_cols=219 Identities=26% Similarity=0.407 Sum_probs=189.4
Q ss_pred CEEEeEEEEeCC----CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEc-cee---CCCC----
Q psy7367 1 MAIQNLSKRFPN----GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY-NHD---IRTD---- 68 (251)
Q Consensus 1 l~i~~l~~~y~~----~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~-g~~---~~~~---- 68 (251)
|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++ |.+ +...
T Consensus 280 l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~ 359 (520)
T TIGR03269 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359 (520)
T ss_pred EEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhh
Confidence 578999999942 2569999999999999999999999999999999999999999999996 643 2211
Q ss_pred hHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----ccCCCCCcCChhHHHHHHH
Q psy7367 69 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----KRTSLANTLSGGMQRKLSV 143 (251)
Q Consensus 69 ~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~~LSgG~kqrv~i 143 (251)
....+++++|+||++.+++.+||.||+.+.... ..+....++++.++++.+++.+ ..++++.+|||||||||+|
T Consensus 360 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~l 438 (520)
T TIGR03269 360 RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVAL 438 (520)
T ss_pred HHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHH
Confidence 123456799999999999999999999875433 2233334457889999999975 5789999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
||||+.+|++|||||||+|||+.+++.++++|++++ + |.|||++|||++++.++|||+++|++|++++.|+++.+.+
T Consensus 439 aral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 439 AQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999984 4 8999999999999999999999999999999998876543
No 216
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-52 Score=362.97 Aligned_cols=217 Identities=24% Similarity=0.368 Sum_probs=188.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCC---C--ChH
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIR---T--DMT 70 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~---~--~~~ 70 (251)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++. . ...
T Consensus 17 l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~ 95 (265)
T PRK14252 17 SEVNKLNFYYGG-YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPI 95 (265)
T ss_pred EEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHH
Confidence 478999999964 6899999999999999999999999999999999999875 7999999998763 1 123
Q ss_pred HhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHcCCC----cccCCCCCcCChhHHHHHHHHH
Q psy7367 71 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK-DLAQLEISNMIVDLGIP----HKRTSLANTLSGGMQRKLSVAM 145 (251)
Q Consensus 71 ~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~----~~~~~~~~~LSgG~kqrv~ia~ 145 (251)
.+++.++|+||++.+|+. |++||+.+.....+... ...++++.++++.+++. +..++++.+||+|||||++|||
T Consensus 96 ~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 174 (265)
T PRK14252 96 EVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIAR 174 (265)
T ss_pred HHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHH
Confidence 456789999999998885 99999988654433332 22345678888888873 4567889999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
||+.+|+++||||||+|||+.++..+.++|++++++.|||++||+++++..+|||+++|++|+++..|+.+.+.
T Consensus 175 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 175 ALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999876799999999999999999999999999999999987654
No 217
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-52 Score=389.07 Aligned_cols=213 Identities=23% Similarity=0.424 Sum_probs=196.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-C-hHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-D-MTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~-~~~~~~~i~~ 78 (251)
++++|++|+|+ +.++|++|||++.+||+++|+|.||||||||+|+|+|.++|++|+|+++|+++.. + .......|+.
T Consensus 9 l~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 9 LELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred eeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEE
Confidence 47899999997 4889999999999999999999999999999999999999999999999999863 3 3445679999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLK----QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV 154 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll 154 (251)
|+|+.+|+|+|||.||+.++.... -+.++..++++.++|+.+++....+.++.+||.||||.|+|||||..+++++
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arll 167 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVL 167 (500)
T ss_pred EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999998865432 2567788889999999999965588999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367 155 ILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214 (251)
Q Consensus 155 llDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~ 214 (251)
|||||||+|+....+.+++++++++ +|.+||++||.++++.++||||.||+||+.+...+
T Consensus 168 IlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 168 ILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999996 69999999999999999999999999999998777
No 218
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.9e-52 Score=362.49 Aligned_cols=211 Identities=20% Similarity=0.327 Sum_probs=186.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++||++. .+|+++||+|++||+++|+||||||||||+++|+|++++ +|+|+++|+++.. ....+++.++|+
T Consensus 1 ~~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 1 MQLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred Ccccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence 568899885 279999999999999999999999999999999999864 9999999998854 334455679999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc-------CCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG-------GSR 152 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~-------~p~ 152 (251)
||++.+++.+|+.+|+.++... .....+..+++.++++.+++.+..++++.+||+|||||++|||||+. +|+
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~ 153 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQ 153 (248)
T ss_pred cccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCC
Confidence 9999888889999999886422 22233445678899999999988899999999999999999999997 679
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
+|||||||+|||+.+++.+.++|++++ +|.|||++||+++++.++||++++|++|+++..|+++.+
T Consensus 154 llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 154 LLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999985 589999999999999999999999999999999987655
No 219
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-52 Score=404.87 Aligned_cols=218 Identities=25% Similarity=0.357 Sum_probs=191.8
Q ss_pred CEEEeEEEEeCC---CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC----------C
Q psy7367 1 MAIQNLSKRFPN---GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR----------T 67 (251)
Q Consensus 1 l~i~~l~~~y~~---~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----------~ 67 (251)
|+++|++++|+. ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..+. .
T Consensus 13 l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~ 92 (623)
T PRK10261 13 LAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSE 92 (623)
T ss_pred EEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccccc
Confidence 579999999952 246999999999999999999999999999999999999999999999987441 1
Q ss_pred -Ch---HHhh-cceEEEccCC--CCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCCc---ccCCCCCcCChh
Q psy7367 68 -DM---TTIR-RSLGVCPQYN--ALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIPH---KRTSLANTLSGG 136 (251)
Q Consensus 68 -~~---~~~~-~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG 136 (251)
.. ..++ +.||||||++ .+++.+||.||+.+..+.. +....+.++++.++++.+||.+ ..++++.+||||
T Consensus 93 ~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgG 172 (623)
T PRK10261 93 QSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGG 172 (623)
T ss_pred CCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHH
Confidence 11 1223 4799999998 6788899999999876653 4555566678999999999963 578999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367 137 MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214 (251)
Q Consensus 137 ~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~ 214 (251)
|||||+||+||+.+|++|||||||++||+.+++.++++|+++. + |.|||+||||++++..+||||++|++|++++.|+
T Consensus 173 q~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~ 252 (623)
T PRK10261 173 MRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252 (623)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCC
Confidence 9999999999999999999999999999999999999999985 4 8999999999999999999999999999999998
Q ss_pred HHHH
Q psy7367 215 SVFL 218 (251)
Q Consensus 215 ~~~~ 218 (251)
++.+
T Consensus 253 ~~~~ 256 (623)
T PRK10261 253 VEQI 256 (623)
T ss_pred HHHh
Confidence 7655
No 220
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3.2e-52 Score=356.38 Aligned_cols=204 Identities=24% Similarity=0.387 Sum_probs=176.8
Q ss_pred CEEEeEEEEeCC------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEc--ce--eCCC-Ch
Q psy7367 1 MAIQNLSKRFPN------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY--NH--DIRT-DM 69 (251)
Q Consensus 1 l~i~~l~~~y~~------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~--g~--~~~~-~~ 69 (251)
++++|++++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++ |+ ++.. ..
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 578999999952 1469999999999999999999999999999999999999999999998 43 4321 11
Q ss_pred H---Hh-hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHH
Q psy7367 70 T---TI-RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVA 144 (251)
Q Consensus 70 ~---~~-~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia 144 (251)
. .. ++.++|+||++.+++.+||.||+.+.....+.......+++.++++.+++.+ ..++++.+||+|||||++||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 161 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIA 161 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHH
Confidence 1 22 4579999999999999999999988654444434444567889999999976 45789999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367 145 MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII 204 (251)
Q Consensus 145 ~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l 204 (251)
|||+.+|+++||||||++||+.+++.+.++|++++ +|.|||++||+++++..+||+++.+
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 162 RGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999985 5899999999999999999999876
No 221
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-52 Score=344.63 Aligned_cols=213 Identities=26% Similarity=0.419 Sum_probs=196.9
Q ss_pred CEEEeEEEEeCCCcc--eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKL--AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~--il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 78 (251)
+.+++++.+|.+ +. +|+|+|++|.+||.++++||||||||||||+++|+.+|+.|+|.++|+++..+.. .-|.
T Consensus 4 l~~~~~sl~y~g-~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga----ergv 78 (259)
T COG4525 4 LNVSHLSLSYEG-KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA----ERGV 78 (259)
T ss_pred eehhheEEecCC-cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc----ccee
Confidence 356889999964 55 9999999999999999999999999999999999999999999999999975432 2389
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
|||++.++|.+|+.||++|+.+++++++.+..+.+.+.+..+||.+..++++.+|||||||||.|||||+.+|++|+|||
T Consensus 79 VFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDE 158 (259)
T COG4525 79 VFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDE 158 (259)
T ss_pred EeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecC
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhh-h-CCCeEEEEeCCHHHHHhhcCEEEEeeC--CEEEeecCHHHH
Q psy7367 159 PTSGVDPYSRRSIWELLIKY-K-KGRTVILTTHYMDEADLLGDRIAIIAA--GKLQCCGSSVFL 218 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l-~-~g~tiii~tHd~~~~~~~~d~i~~l~~--G~i~~~g~~~~~ 218 (251)
|+++||.-.++++-++|.++ + .|+.++++|||++++.-+++|+++|+- |+++..-++++-
T Consensus 159 PfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~df~ 222 (259)
T COG4525 159 PFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDFA 222 (259)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCCHH
Confidence 99999999999999999987 3 499999999999999999999999984 789887776643
No 222
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=7.1e-52 Score=355.00 Aligned_cols=199 Identities=22% Similarity=0.267 Sum_probs=172.6
Q ss_pred EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccC
Q psy7367 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQY 82 (251)
Q Consensus 3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~ 82 (251)
++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ..+.
T Consensus 25 ~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-----------~~~~ 92 (224)
T cd03220 25 ILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-----------LGLG 92 (224)
T ss_pred hhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh-----------hccc
Confidence 345555553 4779999999999999999999999999999999999999999999999987521 1112
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy7367 83 NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162 (251)
Q Consensus 83 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~g 162 (251)
..+++.+||.||+.++...++....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~g 172 (224)
T cd03220 93 GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAV 172 (224)
T ss_pred ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 34556789999998876554444444556788899999999989999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 163 VDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 163 LD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
||+.+++.++++|.++. +|.|||++||+++++..+||++++|++|++++.|
T Consensus 173 LD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 173 GDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999985 5899999999999999999999999999998754
No 223
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.4e-52 Score=356.34 Aligned_cols=205 Identities=23% Similarity=0.343 Sum_probs=177.1
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ....+++.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 578999999964 2479999999999999999999999999999999999999999999999998753 33456788999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK-----------RTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~kqrv~ia~al 147 (251)
+||++.+++ .|++||+.+... ... +++.++++.+++.+. .++++.+||+|||||++|||||
T Consensus 83 ~~q~~~l~~-~tv~enl~~~~~---~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral 154 (221)
T cd03244 83 IPQDPVLFS-GTIRSNLDPFGE---YSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154 (221)
T ss_pred ECCCCcccc-chHHHHhCcCCC---CCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 999999876 599999975421 111 234555666665443 3568999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~ 214 (251)
+.+|+++||||||+|||+.+++.++++|++++++.|||++||+++++.. ||++++|++|+++..|+
T Consensus 155 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 155 LRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence 9999999999999999999999999999998767999999999999976 99999999999988765
No 224
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.7e-52 Score=387.98 Aligned_cols=227 Identities=24% Similarity=0.398 Sum_probs=198.9
Q ss_pred CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC----eeEEEEcceeCCC----Ch
Q psy7367 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS----SGTAKIYNHDIRT----DM 69 (251)
Q Consensus 1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~----~G~i~~~g~~~~~----~~ 69 (251)
|+++||++.|... ..+++||||+|.+||++||+|.|||||||+.++|+|++++. +|+|.++|+++.. ..
T Consensus 6 L~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~ 85 (539)
T COG1123 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREM 85 (539)
T ss_pred EEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHH
Confidence 5899999999532 25999999999999999999999999999999999999887 8999999998743 12
Q ss_pred HHh-hcceEEEccCC--CCCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCCcccC--CCCCcCChhHHHHHHH
Q psy7367 70 TTI-RRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDLGIPHKRT--SLANTLSGGMQRKLSV 143 (251)
Q Consensus 70 ~~~-~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LSgG~kqrv~i 143 (251)
..+ .+.|+|+||+| .|-|-+|+.+.+.-....+. ...+++++++.++|+.++|.+... ++|++|||||||||.|
T Consensus 86 r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~i 165 (539)
T COG1123 86 RKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMI 165 (539)
T ss_pred HHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHH
Confidence 233 36899999997 45556899998877666654 447788889999999999986555 4999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
|+||+.+|++||+||||++||+..+.+|+++|++++ .|.++|+||||++.+.++|||++||++|++++.|+++++...
T Consensus 166 AmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~ 245 (539)
T COG1123 166 AMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245 (539)
T ss_pred HHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhc
Confidence 999999999999999999999999999999999985 399999999999999999999999999999999999888766
Q ss_pred hcCcce
Q psy7367 222 FARGYY 227 (251)
Q Consensus 222 ~~~~~~ 227 (251)
..+.|.
T Consensus 246 p~hpYT 251 (539)
T COG1123 246 PQHPYT 251 (539)
T ss_pred cCCccc
Confidence 555543
No 225
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4e-52 Score=396.94 Aligned_cols=218 Identities=20% Similarity=0.328 Sum_probs=191.0
Q ss_pred CEEEeEEEEeCC----------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch
Q psy7367 1 MAIQNLSKRFPN----------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM 69 (251)
Q Consensus 1 l~i~~l~~~y~~----------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~ 69 (251)
|+++|++++|+. ++.+|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++.. ..
T Consensus 276 l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~ 354 (529)
T PRK15134 276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNR 354 (529)
T ss_pred ccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccch
Confidence 578999999951 2579999999999999999999999999999999999984 89999999998753 11
Q ss_pred ---HHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHH
Q psy7367 70 ---TTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQ--VPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKL 141 (251)
Q Consensus 70 ---~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv 141 (251)
..++++++|+||++ .+++++||.||+.++...+. .+..+.++++.++++.+++. +..++++.+|||||||||
T Consensus 355 ~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 434 (529)
T PRK15134 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRI 434 (529)
T ss_pred hhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHH
Confidence 12356899999997 47888999999988654332 33344456788999999997 578999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 142 SVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 142 ~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+|||||+.+|++|||||||+|||+.+++.++++|++++ + |.|||++|||++++..+|||+++|++|++++.|+++++.
T Consensus 435 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 435 AIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred HHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999999999999984 4 899999999999999999999999999999999887663
No 226
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.9e-52 Score=353.50 Aligned_cols=200 Identities=22% Similarity=0.281 Sum_probs=179.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..++.++|++
T Consensus 12 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~--~~~~~i~~~~ 88 (214)
T PRK13543 12 LAAHALAFSRNE-EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG--DRSRFMAYLG 88 (214)
T ss_pred EEEeeEEEecCC-ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch--hhhhceEEee
Confidence 478999999964 6799999999999999999999999999999999999999999999999987532 2345799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+|+.||+.+....++.. ..+.+.++++.+++.+..++++.+||+|||||++||||++.+|+++||||||
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLHGRR---AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY 165 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhcCCc---HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999998899999998876544321 2345778999999998889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAA 206 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~ 206 (251)
++||+.+++.+.++|.++. +|.|||++|||++++.++||++++++.
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 166 ANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999875 589999999999999999999999863
No 227
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-52 Score=395.97 Aligned_cols=218 Identities=22% Similarity=0.327 Sum_probs=189.4
Q ss_pred CEEEeEEEEeC--CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCeeEEEEcceeCCCC--hHHhhcc
Q psy7367 1 MAIQNLSKRFP--NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-VSSGTAKIYNHDIRTD--MTTIRRS 75 (251)
Q Consensus 1 l~i~~l~~~y~--~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~--~~~~~~~ 75 (251)
|+++|++++|+ +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++... ....++.
T Consensus 260 l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 339 (506)
T PRK13549 260 LEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQG 339 (506)
T ss_pred EEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCC
Confidence 57899999994 23569999999999999999999999999999999999998 5999999999987532 2234668
Q ss_pred eEEEccCC---CCCCCCCHHHHHHHHHH--hcC---CChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHH
Q psy7367 76 LGVCPQYN---ALFDKLTVEEHMWFYSQ--LKQ---VPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 76 i~~v~q~~---~l~~~ltv~e~l~~~~~--~~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~a 146 (251)
++|+||++ .+++++||.||+.+... +.. ......++++.++++.+++. +..++++.+|||||||||+||||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~a 419 (506)
T PRK13549 340 IAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKC 419 (506)
T ss_pred CEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHH
Confidence 99999996 47888999999987532 211 12333446788999999996 57899999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|+.+|++|||||||+|||+.+++.++++|.+++ +|.|||++|||++++.++|||+++|++|+++..|+++++
T Consensus 420 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 420 LLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999999999985 599999999999999999999999999999998876543
No 228
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.1e-51 Score=393.95 Aligned_cols=218 Identities=25% Similarity=0.396 Sum_probs=190.1
Q ss_pred CEEEeEEEEeCC---CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC-ChH-
Q psy7367 1 MAIQNLSKRFPN---GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT-DMT- 70 (251)
Q Consensus 1 l~i~~l~~~y~~---~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~-~~~- 70 (251)
++++|++++|++ .+++|+++||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++.. ...
T Consensus 6 l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 85 (529)
T PRK15134 6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQT 85 (529)
T ss_pred EEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHH
Confidence 578999999953 25799999999999999999999999999999999999986 79999999998853 221
Q ss_pred --Hhh-cceEEEccCCC--CCCCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHHHcCCCc---ccCCCCCcCChhHHHHH
Q psy7367 71 --TIR-RSLGVCPQYNA--LFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIVDLGIPH---KRTSLANTLSGGMQRKL 141 (251)
Q Consensus 71 --~~~-~~i~~v~q~~~--l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~kqrv 141 (251)
..+ +++||+||++. +++.+|+.+|+.+.... .+.+..+..+++.++++.++|.+ ..++++.+|||||||||
T Consensus 86 ~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv 165 (529)
T PRK15134 86 LRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRV 165 (529)
T ss_pred HHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHH
Confidence 223 57999999974 66778999998865432 23444555677899999999975 35889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 142 SVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 142 ~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
+|||||+.+|++|||||||++||+.++..++++|++++ + |.|||+||||++++..+|||+++|++|+++..|+++++
T Consensus 166 ~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 244 (529)
T PRK15134 166 MIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244 (529)
T ss_pred HHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999984 4 89999999999999999999999999999999987655
No 229
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.6e-52 Score=357.43 Aligned_cols=207 Identities=21% Similarity=0.406 Sum_probs=177.2
Q ss_pred CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~ 77 (251)
++++|++++|+++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++.++
T Consensus 12 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 91 (226)
T cd03248 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVS 91 (226)
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEE
Confidence 5789999999642 469999999999999999999999999999999999999999999999988743 2334567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVP---KDLAQLEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
|+||++.+|+ .|++||+.+........ .......+.++++.+ |+.+..++++.+|||||||||+|||||+.+|+
T Consensus 92 ~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~ 170 (226)
T cd03248 92 LVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQ 170 (226)
T ss_pred EEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999998876 59999998753321110 001112356788888 88888899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i 209 (251)
++||||||++||+.+++.+.++|+++.++.|||++|||++++.. ||++++|++|++
T Consensus 171 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 171 VLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 99999999999999999999999998667999999999999975 999999999874
No 230
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-51 Score=365.82 Aligned_cols=217 Identities=22% Similarity=0.372 Sum_probs=188.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCeeEEEEcceeCCC---ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VSSGTAKIYNHDIRT---DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~---~~~~~ 72 (251)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++.. ....+
T Consensus 46 l~i~nl~~~~~~-~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~ 124 (305)
T PRK14264 46 LSVEDLDVYYGD-DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVEL 124 (305)
T ss_pred EEEEEEEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHH
Confidence 478999999964 679999999999999999999999999999999999986 689999999998743 22345
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhc------------CCC-hHHHHHHHHHHHHHcCCC----cccCCCCCcCCh
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLK------------QVP-KDLAQLEISNMIVDLGIP----HKRTSLANTLSG 135 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~------------~~~-~~~~~~~~~~~l~~~~l~----~~~~~~~~~LSg 135 (251)
++.++|+||++.+++ .||+||+.+..... +.. .....+++.++++.+++. +..++++.+|||
T Consensus 125 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 203 (305)
T PRK14264 125 RKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG 203 (305)
T ss_pred hhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCH
Confidence 678999999998887 59999998864321 111 122345688899999884 456888999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEE-EEeeCCEEEeecC
Q psy7367 136 GMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRI-AIIAAGKLQCCGS 214 (251)
Q Consensus 136 G~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i-~~l~~G~i~~~g~ 214 (251)
||||||+|||||+.+|++|||||||+|||+.++..+.++|+++.++.|||++||+++++..+||++ ++|++|+++..|+
T Consensus 204 Gq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~ 283 (305)
T PRK14264 204 GQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDD 283 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCC
Confidence 999999999999999999999999999999999999999999876789999999999999999996 5789999999999
Q ss_pred HHHHH
Q psy7367 215 SVFLK 219 (251)
Q Consensus 215 ~~~~~ 219 (251)
++.+.
T Consensus 284 ~~~~~ 288 (305)
T PRK14264 284 TDKIF 288 (305)
T ss_pred HHHHH
Confidence 87654
No 231
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-52 Score=334.71 Aligned_cols=217 Identities=22% Similarity=0.352 Sum_probs=201.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC--C-----ChHHhh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR--T-----DMTTIR 73 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~--~-----~~~~~~ 73 (251)
|+++|+++.|| ..++|-||+|+.++||.+.++||+|||||||+|.|+-+.-|.+|+..+.|.... . ...++|
T Consensus 3 irv~~in~~yg-~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 3 IQLNGINCFYG-AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred eEEcccccccc-cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 57899999997 478999999999999999999999999999999999999999999999876542 1 123678
Q ss_pred cceEEEccCCCCCCCCCHHHHHHH-HHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 74 RSLGVCPQYNALFDKLTVEEHMWF-YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 74 ~~i~~v~q~~~l~~~ltv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
+.+|+|||...++|++||.||+.- +.+..+.+++++..++.++|+++.|.+++|+.|-.|||||+|||+|||||+++|+
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq 161 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence 999999999999999999999865 5677889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
+|++||||++|||+-..++.++++++.. |.|=+++||..+.+.+.+.+++.|++|+|++.|+...+
T Consensus 162 vllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 162 VLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 9999999999999999999999999975 99999999999999999999999999999999987543
No 232
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-51 Score=340.06 Aligned_cols=172 Identities=41% Similarity=0.768 Sum_probs=160.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++......+++.++|+|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 579999999964 6799999999999999999999999999999999999999999999999987543345567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+|+.||+. ||+||+||++|||||+.+|+++||||||
T Consensus 80 q~~~~~~~~tv~~~~~------------------------------------LS~G~~qrv~laral~~~p~illlDEPt 123 (173)
T cd03230 80 EEPSLYENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLILDEPT 123 (173)
T ss_pred cCCccccCCcHHHHhh------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 9999999899999984 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i 209 (251)
++||+.+++.+.++|+++. +|.|+|++|||++++..+||++++|++|++
T Consensus 124 ~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 124 SGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999985 589999999999999999999999999864
No 233
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1e-51 Score=364.13 Aligned_cols=210 Identities=23% Similarity=0.386 Sum_probs=186.6
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
|+++|++++|.+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.. ....+++.|+|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 578999999942 3579999999999999999999999999999999999997 78999999999854 34567789999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCc-----------CChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANT-----------LSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgG~kqrv~ia~al 147 (251)
+||++.+|+. |+++|+..+.. .. .+++.++++.++|.+..++.|.. ||+|||||++|||||
T Consensus 82 v~q~~~lf~~-tv~~nl~~~~~---~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 82 IPQKVFIFSG-TFRKNLDPYGK---WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred ECCCcccchh-hHHHHhhhccC---CC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999975 99999964321 12 23567788999999888888876 999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+.+|++|||||||++||+.++..+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++..
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhh
Confidence 9999999999999999999999999999988778999999999999875 99999999999999999987654
No 234
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=4.1e-51 Score=354.42 Aligned_cols=217 Identities=21% Similarity=0.290 Sum_probs=183.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCeeEEEEcceeCCC-ChHHh-hcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML--PVSSGTAKIYNHDIRT-DMTTI-RRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~--~p~~G~i~~~g~~~~~-~~~~~-~~~i 76 (251)
|+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|+++.. ..... ++.+
T Consensus 2 i~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 2 LSIKDLHVSVED-KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eEEEEEEEEeCC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 579999999964 67999999999999999999999999999999999995 6999999999988753 22222 3579
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHH-h---cC---CChHHHHHHHHHHHHHcCCC-cccCCCCC-cCChhHHHHHHHHHHH
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQ-L---KQ---VPKDLAQLEISNMIVDLGIP-HKRTSLAN-TLSGGMQRKLSVAMAF 147 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~-~---~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgG~kqrv~ia~al 147 (251)
+|++|++.+++.+|+.+++.+... . .. .......+.++++++.+++. +..++++. +||||||||++|||||
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral 160 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 160 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence 999999998888887777654321 1 11 11122345678899999995 56677775 8999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhh-cCEEEEeeCCEEEeecCHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~-~d~i~~l~~G~i~~~g~~~~~ 218 (251)
+.+|++|||||||++||+.+++.+.++|++++ +++|||++|||++++..+ ||++++|++|+++..|+++..
T Consensus 161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 99999999999999999999999999999986 489999999999999987 899999999999999988754
No 235
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.7e-51 Score=345.96 Aligned_cols=196 Identities=25% Similarity=0.323 Sum_probs=174.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.......++.++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 68999999996 47899999999999999999999999999999999999999999999999987543344567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+|+.||+.++....+. . .+++.++++.+++.+..++++.+||||||||++||||++.+|+++||||||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~--~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 155 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGG--A--QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT 155 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCC--c--HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 999888889999999886554331 1 245788999999998889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEE
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAI 203 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~ 203 (251)
++||+.+++.++++|.+++ +|.|||++||+...+ .|++++.
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 156 TALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceEEee
Confidence 9999999999999999984 589999999998665 4677764
No 236
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=9.2e-52 Score=391.04 Aligned_cols=209 Identities=22% Similarity=0.251 Sum_probs=184.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. .....++.++|+
T Consensus 4 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 4 LQISQGTFRLSD-TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred EEEEeEEEEcCC-eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 578999999964 679999999999999999999999999999999999999999999999987643 233445679999
Q ss_pred ccCCCC--C-C-----CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367 80 PQYNAL--F-D-----KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 80 ~q~~~l--~-~-----~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p 151 (251)
||++.+ + + .+|++|++.+. ....+++.++++.+++.+..++++.+|||||||||+||+||+.+|
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEP 154 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 998643 1 1 46888887542 122456889999999998899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
++|||||||+|||+.+++.++++|++++ +|.|||++|||++++.++||++++|++|+++..|+++++
T Consensus 155 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 155 DLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999985 589999999999999999999999999999999987654
No 237
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-51 Score=392.47 Aligned_cols=212 Identities=21% Similarity=0.367 Sum_probs=184.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h-HHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M-TTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~-~~~~~~i~~ 78 (251)
|+++|+++.|+ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... . ...+++++|
T Consensus 266 l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~ 342 (510)
T PRK09700 266 FEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAY 342 (510)
T ss_pred EEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEE
Confidence 46899998773 389999999999999999999999999999999999999999999999987532 2 244678999
Q ss_pred EccC---CCCCCCCCHHHHHHHHHHhc--------CC-ChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHH
Q psy7367 79 CPQY---NALFDKLTVEEHMWFYSQLK--------QV-PKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAM 145 (251)
Q Consensus 79 v~q~---~~l~~~ltv~e~l~~~~~~~--------~~-~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~ 145 (251)
+||+ +.+++++||+||+.+....+ +. .....++++.++++.+++. +..++++.+|||||||||+|||
T Consensus 343 v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAr 422 (510)
T PRK09700 343 ITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISK 422 (510)
T ss_pred ccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHH
Confidence 9998 46888999999998753211 11 1223345678999999997 7889999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCH
Q psy7367 146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215 (251)
Q Consensus 146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~ 215 (251)
||+.+|++|||||||+|||+.+++.++++|++++ +|.|||++|||++++..+|||+++|++|+++..++.
T Consensus 423 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 423 WLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999999999985 589999999999999999999999999999887654
No 238
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-52 Score=343.27 Aligned_cols=217 Identities=24% Similarity=0.345 Sum_probs=194.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
|+++|+|++.. ++.+|+++||++.+||+.+|+||||||||||||.|+|.+.|++|++.++|.++.. ...++.++-+.+
T Consensus 2 i~a~nls~~~~-Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 2 IRAENLSYSLA-GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeeeEEEee-cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 57899999995 4889999999999999999999999999999999999999999999999999865 344556778999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc------CC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPK--DLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG------GS 151 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~------~p 151 (251)
||+..+-+.+||+|-+.++..-++... .+..+.++.+|...++..+..+...+|||||||||.+||.|++ ++
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 999988666899999999765443222 2445568899999999999999999999999999999999976 45
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
++|+||||||+||+..+..++++.+++. +|..|+.|-||++.+..|||||++|++|++++.|+|++.
T Consensus 161 r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 161 RWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred ceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 6999999999999999999999999995 699999999999999999999999999999999999754
No 239
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3e-51 Score=346.57 Aligned_cols=198 Identities=24% Similarity=0.334 Sum_probs=172.2
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++. +.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++.|+|
T Consensus 7 l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 86 (207)
T cd03369 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTI 86 (207)
T ss_pred EEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 5789999999642 479999999999999999999999999999999999999999999999998743 33445678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
+||++.+++ .|++||+.++. .... +.+.++++ .++++.+|||||+||++|||||+.+|+++||||
T Consensus 87 v~q~~~~~~-~tv~~~l~~~~---~~~~----~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~llllDE 151 (207)
T cd03369 87 IPQDPTLFS-GTIRSNLDPFD---EYSD----EEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDE 151 (207)
T ss_pred EecCCcccC-ccHHHHhcccC---CCCH----HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 999998887 59999997532 1111 22334443 356899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367 159 PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~ 214 (251)
||++||+.+++.++++|+++.++.|+|++||+++++.. ||++++|++|+++..|+
T Consensus 152 P~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 152 ATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDH 206 (207)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCC
Confidence 99999999999999999998678999999999999976 99999999999988775
No 240
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-51 Score=339.68 Aligned_cols=173 Identities=36% Similarity=0.588 Sum_probs=160.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC---hHHhhcceE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD---MTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~~~i~ 77 (251)
++++|++++|++ +++++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ...+++.++
T Consensus 1 i~~~~l~~~~~~-~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYGQ-KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEECC-eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 579999999964 6799999999999999999999999999999999999999999999999987542 235567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
|+||++.+++.+|++||+.+. ||+|||||++|||||+.+|+++|||
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~----------------------------------lS~G~~qr~~la~al~~~p~llilD 125 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG----------------------------------LSGGQQQRVALARALAMDPDVLLLD 125 (178)
T ss_pred EEecCCccCCCCCHHHheeec----------------------------------CCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 999999999889999998653 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGK 208 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~ 208 (251)
|||+|||+.++..++++|++++ + +.|+|++|||++++..+||++++|++|+
T Consensus 126 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 126 EPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999985 4 7999999999999999999999999884
No 241
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-51 Score=345.43 Aligned_cols=190 Identities=18% Similarity=0.217 Sum_probs=167.1
Q ss_pred CEEEeEEEEeCC---CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCeeEEEEcceeCCCChHHhhc
Q psy7367 1 MAIQNLSKRFPN---GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP---VSSGTAKIYNHDIRTDMTTIRR 74 (251)
Q Consensus 1 l~i~~l~~~y~~---~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 74 (251)
+.++|++|.|+. ++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.......++
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 83 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPG 83 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcc
Confidence 468999999953 3579999999999999999999999999999999999999 8999999999988543334567
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367 75 SLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV 154 (251)
Q Consensus 75 ~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll 154 (251)
.++|+||++.+++.+||+||+.+..... .++++.+||+|||||++|||||+.+|+++
T Consensus 84 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------~~~~~~~LS~Ge~qrl~laral~~~p~ll 140 (202)
T cd03233 84 EIIYVSEEDVHFPTLTVRETLDFALRCK-----------------------GNEFVRGISGGERKRVSIAEALVSRASVL 140 (202)
T ss_pred eEEEEecccccCCCCcHHHHHhhhhhhc-----------------------cccchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 8999999999999999999998753211 56788999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEE-EeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 155 ILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVIL-TTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 155 llDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii-~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
||||||++||+.+++.++++|+++. + +.|+|+ ++|+.+++.++||++++|++|+++..|
T Consensus 141 llDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 141 CWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999985 4 666555 566678999999999999999998654
No 242
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.5e-51 Score=339.63 Aligned_cols=177 Identities=27% Similarity=0.480 Sum_probs=161.4
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 79 (251)
++++|++++|++. +++++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++......+++.++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 6899999999642 369999999999999999999999999999999999999999999999998743223456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP 159 (251)
||++.+++ .|++||+ +.+||+|||||++||||++.+|+++|||||
T Consensus 81 ~q~~~~~~-~tv~~~i----------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP 125 (178)
T cd03247 81 NQRPYLFD-TTLRNNL----------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEP 125 (178)
T ss_pred ccCCeeec-ccHHHhh----------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99998886 6999987 789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 160 TSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 160 t~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
|++||+.+++.+++.|+++.++.|||++||+++++. .||++++|++|++++.|
T Consensus 126 ~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 126 TVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence 999999999999999999866899999999999996 69999999999998654
No 243
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=3.3e-51 Score=343.65 Aligned_cols=182 Identities=30% Similarity=0.492 Sum_probs=165.0
Q ss_pred CEEEeEEEEeCC-----CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCeeEEEEcceeCCCChHHhh
Q psy7367 1 MAIQNLSKRFPN-----GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML--PVSSGTAKIYNHDIRTDMTTIR 73 (251)
Q Consensus 1 l~i~~l~~~y~~-----~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~--~p~~G~i~~~g~~~~~~~~~~~ 73 (251)
|+++|++++|++ .+++|+++||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. ..++
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~--~~~~ 81 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK--RSFR 81 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch--Hhhh
Confidence 578999999964 267999999999999999999999999999999999999 9999999999998853 2456
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCE
Q psy7367 74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRT 153 (251)
Q Consensus 74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~l 153 (251)
+.++|+||++.+++.+|++||+.+..... +||+|||||++|||||+.+|++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-----------------------------~LS~G~~qrv~laral~~~p~i 132 (194)
T cd03213 82 KIIGYVPQDDILHPTLTVRETLMFAAKLR-----------------------------GLSGGERKRVSIALELVSNPSL 132 (194)
T ss_pred heEEEccCcccCCCCCcHHHHHHHHHHhc-----------------------------cCCHHHHHHHHHHHHHHcCCCE
Confidence 78999999999999999999997643210 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHH-HHHhhcCEEEEeeCCEEEeec
Q psy7367 154 VILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMD-EADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 154 lllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~-~~~~~~d~i~~l~~G~i~~~g 213 (251)
+||||||++||+.+++.++++|++++ +++|||++||+++ ++..+||++++|++|++++.|
T Consensus 133 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 133 LFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999985 5999999999996 788899999999999997653
No 244
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.6e-51 Score=376.40 Aligned_cols=213 Identities=28% Similarity=0.497 Sum_probs=197.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC--ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT--DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~~i~~ 78 (251)
+++++++|+|+ +..++++|||+|++|||++|+|.||||||||+++|.|+++|++|+|+++|+++.- +.++.+..||+
T Consensus 5 l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 5 LEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred EEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcE
Confidence 57899999997 5889999999999999999999999999999999999999999999999999853 45567889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQL---KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
|+|++.|++.+||.||+.++..- .....+..++++.++.+++||+-..++++.+||-||||||.|.+||.++|++||
T Consensus 84 VhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLI 163 (501)
T COG3845 84 VHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLI 163 (501)
T ss_pred EeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEE
Confidence 99999999999999999997642 234667788899999999999988899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~ 214 (251)
|||||+-|-|...+.+++.+++++ +|+|||++||.++++.++|||+.+|+.|+++...+
T Consensus 164 LDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 164 LDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999996 69999999999999999999999999999875544
No 245
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.8e-51 Score=389.87 Aligned_cols=215 Identities=24% Similarity=0.333 Sum_probs=187.0
Q ss_pred CEEEeEEEEeC--CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEEcceeCCC-C-hHHhhcc
Q psy7367 1 MAIQNLSKRFP--NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-SSGTAKIYNHDIRT-D-MTTIRRS 75 (251)
Q Consensus 1 l~i~~l~~~y~--~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~-~-~~~~~~~ 75 (251)
|+++|++++|+ +++.+|+++||+|++||+++|+||||||||||||+|+|+++| ++|+|+++|+++.. . ...++++
T Consensus 258 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (500)
T TIGR02633 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337 (500)
T ss_pred EEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 47899999993 135699999999999999999999999999999999999985 89999999998853 2 2345678
Q ss_pred eEEEccCC---CCCCCCCHHHHHHHHHH--hc---CCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHH
Q psy7367 76 LGVCPQYN---ALFDKLTVEEHMWFYSQ--LK---QVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 76 i~~v~q~~---~l~~~ltv~e~l~~~~~--~~---~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~a 146 (251)
++|+||++ .+++++||+||+.+... .. .......++++.++++.+++.. ..++++.+|||||||||+||||
T Consensus 338 i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~a 417 (500)
T TIGR02633 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKM 417 (500)
T ss_pred CEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHH
Confidence 99999996 58889999999987531 11 1223334567889999999974 6799999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCH
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~ 215 (251)
|+.+|++|||||||+|||+.+++.++++|.+++ +|.|||++|||++++.++|||+++|++|++++.++.
T Consensus 418 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~ 487 (500)
T TIGR02633 418 LLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVN 487 (500)
T ss_pred HhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcc
Confidence 999999999999999999999999999999985 589999999999999999999999999999987754
No 246
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4.5e-51 Score=355.77 Aligned_cols=199 Identities=22% Similarity=0.406 Sum_probs=176.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +..++|+|
T Consensus 5 l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~----------~~~i~~v~ 73 (251)
T PRK09544 5 VSLENVSVSFGQ-RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----------KLRIGYVP 73 (251)
T ss_pred EEEeceEEEECC-ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----------ccCEEEec
Confidence 478999999964 6799999999999999999999999999999999999999999999976 23699999
Q ss_pred cCCCCCCC--CCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 81 QYNALFDK--LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 81 q~~~l~~~--ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
|++.+++. .|+.+++.+.. +.. .+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||
T Consensus 74 q~~~~~~~l~~~~~~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 146 (251)
T PRK09544 74 QKLYLDTTLPLTVNRFLRLRP---GTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE 146 (251)
T ss_pred cccccccccChhHHHHHhccc---ccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99887765 37777765421 111 2457789999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 159 PTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
||+|||+.++..++++|+++. + |.|||++||+++++..+||++++|++ +++..|+++++
T Consensus 147 Pt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 147 PTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 999999999999999999984 4 89999999999999999999999965 78899988655
No 247
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5e-51 Score=345.64 Aligned_cols=197 Identities=24% Similarity=0.319 Sum_probs=175.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. . ..++.++|++
T Consensus 3 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~-~~~~~~~~~~ 79 (207)
T PRK13539 3 LEGEDLACVRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-P-DVAEACHYLG 79 (207)
T ss_pred EEEEeEEEEECC-eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-h-hhHhhcEEec
Confidence 578999999964 679999999999999999999999999999999999999999999999988642 2 2667899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+|+.||+.+.....+.. .+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||
T Consensus 80 ~~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 155 (207)
T PRK13539 80 HRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT 155 (207)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9988888899999998865543322 235788999999988888999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAA 206 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~ 206 (251)
+|||+.+++.++++|++++ +|.|||++||+++++.. |+++.+..
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 156 AALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence 9999999999999999874 58999999999999986 88887754
No 248
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-52 Score=345.16 Aligned_cols=217 Identities=25% Similarity=0.371 Sum_probs=202.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|++|+|+ ++.+++++|++|++|.+++++|||||||||||.+++.|+++++|+|+++|.++.. +.+++.++++.+
T Consensus 2 I~i~nv~K~y~-~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 2 ITIENVSKSYG-TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred eeehhhhHhhC-CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 57899999996 5899999999999999999999999999999999999999999999999999965 566788899999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHh--cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQL--KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
-|++.+-..+||+|-+.|+..- .+....+.+..+.++++.++|++..+++..+||||||||..||..++++.++++||
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLD 160 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLD 160 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEec
Confidence 9999998899999999986432 35566777888999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
||.++||-+....+++.|+++. + |+||++|-||++++..++|+|+-|++|+++..|+|+++
T Consensus 161 EPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 161 EPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred CcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHh
Confidence 9999999999999999999985 4 99999999999999999999999999999999999765
No 249
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.2e-51 Score=344.24 Aligned_cols=195 Identities=20% Similarity=0.315 Sum_probs=174.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......++++++|+|
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 2 LDVIELDFDYHD-QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEEEeCC-eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 578999999964 6799999999999999999999999999999999999999999999999988544445678899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+||.||+.+..... .. ...+.++++.+++.+..++++.+||+||+||++||||++.+|++|||||||
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~ 155 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFS---PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL 155 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcC---cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9999988899999998864321 11 246788999999988888899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEE
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIA 202 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~ 202 (251)
++||+.+++.+.++|++++ +|.|||++||+.+.+.. ||...
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 156 VALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred cccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cchhh
Confidence 9999999999999999985 58999999999998865 88654
No 250
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.7e-51 Score=356.60 Aligned_cols=215 Identities=22% Similarity=0.302 Sum_probs=182.5
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++. +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++.. ....+++.++|
T Consensus 20 i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~ 99 (257)
T cd03288 20 IKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSI 99 (257)
T ss_pred EEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEE
Confidence 5789999999642 479999999999999999999999999999999999999999999999998854 33456788999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHH-----HHHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ-----LEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p 151 (251)
+||++.+++ .|++||+..... ....... ..+.++++.+ +++...++++.+||+||+||++|||||+.+|
T Consensus 100 v~q~~~l~~-~tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 100 ILQDPILFS-GSIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred ECCCCcccc-cHHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999998887 499999864211 1111111 1234455555 6666677788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
++|||||||+|||+.+++.+++++.++.++.|||++||+++++.. |||+++|++|+++..|+++.+..
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999988778999999999999986 99999999999999999876643
No 251
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.4e-51 Score=393.95 Aligned_cols=215 Identities=25% Similarity=0.365 Sum_probs=182.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|+++.|.+++++|+|+||+|++|+.++|+||||||||||+++|+|++ |++|+|.++|.++.. +...+|++|+||
T Consensus 350 i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v 428 (588)
T PRK11174 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWV 428 (588)
T ss_pred EEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEe
Confidence 478999976644578999999999999999999999999999999999999 999999999999965 556788999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
||++.+|+. |++||+.++.. ..+.++..+. +.+.++.+ |++.........||||||||++|||||+++|+
T Consensus 429 ~Q~~~LF~~-TI~eNI~~g~~--~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~ 505 (588)
T PRK11174 429 GQNPQLPHG-TLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQ 505 (588)
T ss_pred cCCCcCCCc-CHHHHhhcCCC--CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999986 99999988631 2233222211 22233333 44444445567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+||||||||+||+.+.+.+.+.|.++.+++|+|++||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus 506 IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 506 LLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-hCCEEEEEeCCeEeecCCHHHHHh
Confidence 9999999999999999999999999888999999999998886 499999999999999999887754
No 252
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-51 Score=340.45 Aligned_cols=181 Identities=27% Similarity=0.384 Sum_probs=162.9
Q ss_pred CEEEeEEEEeCC---CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCeeEEEEcceeCCCChHHhhcc
Q psy7367 1 MAIQNLSKRFPN---GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML--PVSSGTAKIYNHDIRTDMTTIRRS 75 (251)
Q Consensus 1 l~i~~l~~~y~~---~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~--~p~~G~i~~~g~~~~~~~~~~~~~ 75 (251)
|+++|+++.|++ ++++|+++||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|+++. ..+++.
T Consensus 4 l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~---~~~~~~ 80 (192)
T cd03232 4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD---KNFQRS 80 (192)
T ss_pred EEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH---HHhhhc
Confidence 578999999963 257999999999999999999999999999999999986 489999999999874 345678
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
++|++|++.+++.+|++||+.+.... + +|||||+||++|||||+.+|+++|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~----------------~-------------~LSgGe~qrv~la~al~~~p~vll 131 (192)
T cd03232 81 TGYVEQQDVHSPNLTVREALRFSALL----------------R-------------GLSVEQRKRLTIGVELAAKPSILF 131 (192)
T ss_pred eEEecccCccccCCcHHHHHHHHHHH----------------h-------------cCCHHHhHHHHHHHHHhcCCcEEE
Confidence 99999999999999999999874211 0 899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHH-HHHhhcCEEEEeeC-CEEEeec
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMD-EADLLGDRIAIIAA-GKLQCCG 213 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~-~~~~~~d~i~~l~~-G~i~~~g 213 (251)
|||||++||+.++..+++.+++++ +|.|||++||+++ ++..+||++++|++ |++++.|
T Consensus 132 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 132 LDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999985 4899999999998 47889999999999 9998754
No 253
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.8e-51 Score=341.63 Aligned_cols=180 Identities=27% Similarity=0.433 Sum_probs=159.1
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---ChHHhhcceEEEccCCC--CCC
Q psy7367 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---DMTTIRRSLGVCPQYNA--LFD 87 (251)
Q Consensus 13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~~~i~~v~q~~~--l~~ 87 (251)
++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++.++|+||++. ++
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~- 82 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF- 82 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-
Confidence 4679999999999999999999999999999999999999999999999998742 12345678999999973 45
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q psy7367 88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167 (251)
Q Consensus 88 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~ 167 (251)
.+|++||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.+
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 162 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAG 162 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 47999999886544444444455678899999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh-CCCeEEEEeCCHHH
Q psy7367 168 RRSIWELLIKYK-KGRTVILTTHYMDE 193 (251)
Q Consensus 168 ~~~l~~~l~~l~-~g~tiii~tHd~~~ 193 (251)
++.+.++|++++ +|.|||++|||+++
T Consensus 163 ~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 163 REQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999985 58999999999875
No 254
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1e-50 Score=334.62 Aligned_cols=170 Identities=28% Similarity=0.531 Sum_probs=156.1
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++. +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 5799999999632 469999999999999999999999999999999999999999999999998854 33455678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
++|++.+++. |++||+ ||||||||++|||||+.+|+++||||
T Consensus 81 ~~q~~~~~~~-tv~~~l-------------------------------------LS~G~~qrv~la~al~~~p~~lllDE 122 (173)
T cd03246 81 LPQDDELFSG-SIAENI-------------------------------------LSGGQRQRLGLARALYGNPRILVLDE 122 (173)
T ss_pred ECCCCccccC-cHHHHC-------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999988874 999998 99999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367 159 PTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i 209 (251)
||++||+.++..++++|++++ +|+|||++|||++++. +||++++|++|++
T Consensus 123 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 123 PNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred CccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 999999999999999999985 5899999999999985 7999999999874
No 255
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.3e-50 Score=336.69 Aligned_cols=172 Identities=30% Similarity=0.455 Sum_probs=157.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~i~~ 78 (251)
++++|++++| +|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ....++.++|
T Consensus 5 l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (182)
T cd03215 5 LEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAY 79 (182)
T ss_pred EEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEE
Confidence 4789999988 89999999999999999999999999999999999999999999999988542 2345678999
Q ss_pred EccCC---CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 79 CPQYN---ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 79 v~q~~---~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
+||++ .+++.+|++||+.++.. ||+|||||++|||||+.+|+++|
T Consensus 80 ~~q~~~~~~~~~~~t~~e~l~~~~~--------------------------------LS~G~~qrl~la~al~~~p~lll 127 (182)
T cd03215 80 VPEDRKREGLVLDLSVAENIALSSL--------------------------------LSGGNQQKVVLARWLARDPRVLI 127 (182)
T ss_pred ecCCcccCcccCCCcHHHHHHHHhh--------------------------------cCHHHHHHHHHHHHHccCCCEEE
Confidence 99985 57888999999977421 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i 209 (251)
|||||++||+.+++.+.+++++++ ++.|||++||+++++.++||++++|++|++
T Consensus 128 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 128 LDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999985 589999999999999999999999999974
No 256
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-50 Score=350.77 Aligned_cols=209 Identities=20% Similarity=0.269 Sum_probs=184.9
Q ss_pred CEEEeEEEEeCC-------------------CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEc
Q psy7367 1 MAIQNLSKRFPN-------------------GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61 (251)
Q Consensus 1 l~i~~l~~~y~~-------------------~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~ 61 (251)
++++||+|.|.. .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~ 84 (264)
T PRK13546 5 VNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRN 84 (264)
T ss_pred EEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence 467888887732 1248999999999999999999999999999999999999999999998
Q ss_pred ceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHH
Q psy7367 62 NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKL 141 (251)
Q Consensus 62 g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv 141 (251)
|. +++++|.+.+++.+|+.||+.+.....+....+..+.+..+++.+++.+..++++.+||+||+||+
T Consensus 85 g~------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv 152 (264)
T PRK13546 85 GE------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKL 152 (264)
T ss_pred CE------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHH
Confidence 84 457778877788899999998765544444455555677889999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 142 SVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 142 ~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+||+||+.+|++|||||||+|||+.+++.+++.|.+++ +|.|||++||+++++..+||++++|++|++++.|+++++..
T Consensus 153 ~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 153 GFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999985 58999999999999999999999999999999999877655
Q ss_pred h
Q psy7367 221 S 221 (251)
Q Consensus 221 ~ 221 (251)
.
T Consensus 233 ~ 233 (264)
T PRK13546 233 K 233 (264)
T ss_pred H
Confidence 4
No 257
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=7e-51 Score=337.68 Aligned_cols=176 Identities=29% Similarity=0.481 Sum_probs=162.0
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEc
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCP 80 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~ 80 (251)
+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.++|+|
T Consensus 1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 57999999964 679999999999999999999999999999999999999999999999998854 3344566799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
| +++.+++.+..++++.+||+|||||++|||||+.+|+++||||||
T Consensus 80 q----------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 125 (180)
T cd03214 80 Q----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPT 125 (180)
T ss_pred H----------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 8 677888888888899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCC 212 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~ 212 (251)
++||+.+++.+.++|.+++ + +.|||++||+++++.++||++++|++|+++..
T Consensus 126 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 126 SHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999985 4 89999999999999999999999999999754
No 258
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.7e-51 Score=396.94 Aligned_cols=213 Identities=25% Similarity=0.402 Sum_probs=186.4
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|+.. ..+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||.|+.. +...+|++|||
T Consensus 472 I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~ 551 (709)
T COG2274 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGY 551 (709)
T ss_pred EEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeE
Confidence 5789999999654 469999999999999999999999999999999999999999999999999965 66788999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-----------CCCcccCCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-----------GIPHKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
|+|++.+|.. |++||+.++.... +. +++.++++.. |++.........||||||||++|||||
T Consensus 552 V~Q~~~Lf~g-SI~eNi~l~~p~~--~~----e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL 624 (709)
T COG2274 552 VLQDPFLFSG-SIRENIALGNPEA--TD----EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL 624 (709)
T ss_pred EcccchhhcC-cHHHHHhcCCCCC--CH----HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh
Confidence 9999999986 9999999854321 11 2233333333 344444556678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+++|++||||||||+||+.+.+.+.+.|.++.+|+|+|++||.+..+. .||||++|++|+++++|+.+++.+.
T Consensus 625 l~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 625 LSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred ccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCceeccCCHHHHHHh
Confidence 999999999999999999999999999999999999999999999997 5999999999999999999887665
No 259
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=3.5e-50 Score=338.83 Aligned_cols=184 Identities=24% Similarity=0.415 Sum_probs=165.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCeeEEEEcceeCCCC-hHH-hhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM--LPVSSGTAKIYNHDIRTD-MTT-IRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~~-~~~-~~~~i 76 (251)
++++|++++|+ ++.+++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++... ... .+..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 57999999996 46899999999999999999999999999999999999 579999999999998642 222 24569
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
+|+||++.+++.+++++++ ++.+.+||+||+||++|||||+.+|+++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~l-------------------------------~~~~~~LS~G~~qrv~laral~~~p~illl 128 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL-------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAIL 128 (200)
T ss_pred EEeecChhhccCccHHHHH-------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999988988776 112368999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHh-hcCEEEEeeCCEEEeecCHH
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADL-LGDRIAIIAAGKLQCCGSSV 216 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~-~~d~i~~l~~G~i~~~g~~~ 216 (251)
||||++||+.++..++++|++++ ++.|||++||+++.+.. +||++++|++|++++.|+.+
T Consensus 129 DEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 129 DEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence 99999999999999999999985 48999999999999988 79999999999999998654
No 260
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-51 Score=379.10 Aligned_cols=211 Identities=29% Similarity=0.478 Sum_probs=187.7
Q ss_pred EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEcc
Q psy7367 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQ 81 (251)
Q Consensus 3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q 81 (251)
.+|+++.|++++++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+... ....+|++++||+|
T Consensus 323 ~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q 402 (559)
T COG4988 323 LENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402 (559)
T ss_pred ecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCC
Confidence 45999999876789999999999999999999999999999999999999999999999999865 55678999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCC------CC----CcCChhHHHHHHHHHHHccCC
Q psy7367 82 YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTS------LA----NTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 82 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~------~~----~~LSgG~kqrv~ia~al~~~p 151 (251)
+|.+|+. |++||+.++..- . .++.+.+++++.++.+..++ .+ ..|||||+|||++||||+.++
T Consensus 403 ~p~lf~g-TireNi~l~~~~--~----s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~ 475 (559)
T COG4988 403 NPYLFAG-TIRENILLARPD--A----SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPA 475 (559)
T ss_pred CCccccc-cHHHHhhccCCc--C----CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999987 999999886321 1 23457777888777654443 23 349999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+++||||||++||.++.+.+.+.|.++.+++|++++||++..+.. ||+|++|++|++++.|+++++.++
T Consensus 476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 476 SLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred CEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHhhc
Confidence 999999999999999999999999999989999999999999986 999999999999999999887544
No 261
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.1e-50 Score=395.59 Aligned_cols=209 Identities=24% Similarity=0.360 Sum_probs=183.2
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++||+++|++ ++++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|+++.. +...+|++|||
T Consensus 452 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 531 (686)
T TIGR03797 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGV 531 (686)
T ss_pred EEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEE
Confidence 478999999953 4679999999999999999999999999999999999999999999999999965 56678999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCccc-----------CCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR-----------TSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~kqrv~ia~al 147 (251)
|||++.+|+. |++||+.++.. .+. +++.++++..++.+.. ......||||||||++|||||
T Consensus 532 v~Q~~~lf~g-TI~eNi~~~~~---~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAl 603 (686)
T TIGR03797 532 VLQNGRLMSG-SIFENIAGGAP---LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL 603 (686)
T ss_pred EccCCccCcc-cHHHHHhcCCC---CCH----HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 9999999986 99999988532 222 3456667776665433 233467999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+++|++||||||||+||+.+.+.+.+.|+++ ++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+
T Consensus 604 l~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 604 VRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999887 5899999999999875 99999999999999999887754
No 262
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.3e-50 Score=390.19 Aligned_cols=214 Identities=22% Similarity=0.376 Sum_probs=183.2
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++ ++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|+++|.++.. ....+++.|+|
T Consensus 342 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~ 421 (582)
T PRK11176 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVAL 421 (582)
T ss_pred EEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceE
Confidence 578999999964 3679999999999999999999999999999999999999999999999999864 45567889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al 147 (251)
+||++.+|+. |++||+.++.. ..... +++.++++..++.+ .......+||||||||++|||||
T Consensus 422 v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARal 495 (582)
T PRK11176 422 VSQNVHLFND-TIANNIAYART-EQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_pred EccCceeecc-hHHHHHhcCCC-CCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 9999999985 99999987521 11122 34555566555432 23333467999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+++|+++|||||||+||+.+...+++.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus 496 l~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 496 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred HhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999877899999999998876 5999999999999999998877543
No 263
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-50 Score=331.23 Aligned_cols=169 Identities=30% Similarity=0.530 Sum_probs=155.5
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++. ..+++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 5899999999642 279999999999999999999999999999999999999999999999998753 33455678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
+||++.+++ .|++||+ ||+|||||++|||||+.+|+++||||
T Consensus 81 ~~~~~~~~~-~t~~e~l-------------------------------------LS~G~~~rl~la~al~~~p~llllDE 122 (171)
T cd03228 81 VPQDPFLFS-GTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILILDE 122 (171)
T ss_pred EcCCchhcc-chHHHHh-------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999998876 5999997 99999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367 159 PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~ 208 (251)
||+|||+.++..+.++|+++.+++|||++|||++++.. ||++++|++|+
T Consensus 123 P~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 123 ATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred CCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 99999999999999999998768999999999999987 99999999884
No 264
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.3e-50 Score=382.53 Aligned_cols=211 Identities=26% Similarity=0.392 Sum_probs=182.8
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h-HHhhcceEEE
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M-TTIRRSLGVC 79 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~-~~~~~~i~~v 79 (251)
+++|+++ .+|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|+++|+++... . ..+++++||+
T Consensus 259 ~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v 332 (501)
T PRK10762 259 KVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYI 332 (501)
T ss_pred EEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEe
Confidence 4566653 369999999999999999999999999999999999999999999999988532 2 2346789999
Q ss_pred ccCC---CCCCCCCHHHHHHHHHH--hc---C-CChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHcc
Q psy7367 80 PQYN---ALFDKLTVEEHMWFYSQ--LK---Q-VPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIG 149 (251)
Q Consensus 80 ~q~~---~l~~~ltv~e~l~~~~~--~~---~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~ 149 (251)
||++ .+++.+||.||+.+... .. + ....+..++++++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 333 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~ 412 (501)
T PRK10762 333 SEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMT 412 (501)
T ss_pred cCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhh
Confidence 9996 57888999999987431 11 1 12233455788999999995 67899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 150 GSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
+|++|||||||+|||+.+++.++++|+++. +|.|||++|||++++..+||++++|++|+++..++++.+
T Consensus 413 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 413 RPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999999985 599999999999999999999999999999988876543
No 265
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-49 Score=373.12 Aligned_cols=208 Identities=20% Similarity=0.270 Sum_probs=181.9
Q ss_pred CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 78 (251)
++++||+++|+++ +.+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|+++|.+. +
T Consensus 22 L~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------~ 89 (549)
T PRK13545 22 DKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------L 89 (549)
T ss_pred eEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------e
Confidence 3577888887543 4699999999999999999999999999999999999999999999999652 1
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
+.+.+.+++.+|++||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 90 i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDE 169 (549)
T PRK13545 90 IAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDE 169 (549)
T ss_pred EEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 22244566778999999886554444455555678889999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 159 PTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
||+|||+.++..+++.|++++ +|.|||++|||++++..+||++++|++|++++.|+++++..
T Consensus 170 PTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 170 ALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999985 58999999999999999999999999999999998876544
No 266
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.4e-50 Score=386.24 Aligned_cols=212 Identities=19% Similarity=0.351 Sum_probs=185.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|++++|++++++|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +...++++|+|+
T Consensus 341 i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred EEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 5789999999654679999999999999999999999999999999999999999999999999965 556788999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
||++.+|++ |++||+.++. .... +++.++++.+|+.+ ........||||||||++|||||+
T Consensus 421 ~Q~~~lF~~-Ti~~NI~~~~---~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl 492 (592)
T PRK10790 421 QQDPVVLAD-TFLANVTLGR---DISE----EQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV 492 (592)
T ss_pred ccCCccccc-hHHHHHHhCC---CCCH----HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 999999987 9999999863 2222 34566666666543 233345679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
.+|+++|||||||+||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus 493 ~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 493 QTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999877899999999998887 4999999999999999999877543
No 267
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-50 Score=383.00 Aligned_cols=211 Identities=19% Similarity=0.324 Sum_probs=182.4
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhhcceEEE
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIRRSLGVC 79 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~i~~v 79 (251)
+++|++ + +.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ....+++++|+
T Consensus 259 ~~~~~~--~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 333 (501)
T PRK11288 259 RLDGLK--G---PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLC 333 (501)
T ss_pred EEeccc--c---CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEc
Confidence 456665 2 2489999999999999999999999999999999999999999999999987532 23446789999
Q ss_pred ccCC---CCCCCCCHHHHHHHHHHhc----C--CChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHcc
Q psy7367 80 PQYN---ALFDKLTVEEHMWFYSQLK----Q--VPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIG 149 (251)
Q Consensus 80 ~q~~---~l~~~ltv~e~l~~~~~~~----~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~ 149 (251)
||++ .+++.+|+.||+.+..... + ......++.+.++++.+++. +..++++.+|||||||||+||+||+.
T Consensus 334 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~ 413 (501)
T PRK11288 334 PEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSE 413 (501)
T ss_pred CcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHcc
Confidence 9996 4888899999998743211 1 12223345688999999994 67899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367 150 GSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 217 (251)
Q Consensus 150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 217 (251)
+|++|||||||+|||+.+++.++++|.+++ +|.|||++|||++++..+||++++|++|++++.|++++
T Consensus 414 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 414 DMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 999999999999999999999999999985 58999999999999999999999999999999987653
No 268
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.4e-50 Score=386.98 Aligned_cols=213 Identities=24% Similarity=0.437 Sum_probs=188.9
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. +...+|+.|+|
T Consensus 339 i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 418 (574)
T PRK11160 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISV 418 (574)
T ss_pred EEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeE
Confidence 5789999999643 569999999999999999999999999999999999999999999999999865 55678899999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCC----------CCCcCChhHHHHHHHHHHHc
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTS----------LANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~LSgG~kqrv~ia~al~ 148 (251)
+||++.+|+. |++||+.++.. .. ..+++.++++.+++.+..++ ....||||||||++|||||+
T Consensus 419 v~Q~~~lf~~-ti~~Ni~~~~~--~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall 491 (574)
T PRK11160 419 VSQRVHLFSA-TLRDNLLLAAP--NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALL 491 (574)
T ss_pred Ecccchhhcc-cHHHHhhcCCC--cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999985 99999988532 11 23457788888888766544 45679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
++|+++||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 492 ~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 492 HDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHHHhc
Confidence 999999999999999999999999999998889999999999999865 999999999999999998876543
No 269
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=7.2e-50 Score=384.20 Aligned_cols=217 Identities=25% Similarity=0.399 Sum_probs=189.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|++++|++++++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++.. +...+|++|+||
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V 408 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV 408 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence 5789999999745789999999999999999999999999999999999999999999999999975 567889999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
||++.+|. -|++||+.++..- .+.++..+. +.+.++.+ |++.........||||||||++||||++.+|+
T Consensus 409 ~Qd~~LF~-~TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ 485 (567)
T COG1132 409 SQDPLLFS-GTIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP 485 (567)
T ss_pred cccceeec-ccHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999998 5999999986432 223333322 23334444 55555555667999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+++||||||+||+.+...+.+.+.++.+++|+|+++|.+..+.. ||+|++|++|++++.|+++++...
T Consensus 486 ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 486 ILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred EEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHHHc
Confidence 99999999999999999999999988788899999999999987 999999999999999999887654
No 270
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9.7e-50 Score=336.65 Aligned_cols=191 Identities=23% Similarity=0.375 Sum_probs=160.2
Q ss_pred CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcce
Q psy7367 1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 76 (251)
++++||+++|++. +++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| +|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------------~i 68 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SI 68 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------------EE
Confidence 6899999999643 3699999999999999999999999999999999999999999999988 59
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHcc
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIG 149 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~ 149 (251)
+|+||++.+++ .|++||+.+.... ......+. +.+.+..+ ++....++++.+||+|||||++|||||+.
T Consensus 69 ~~~~q~~~l~~-~t~~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~ 144 (204)
T cd03250 69 AYVSQEPWIQN-GTIRENILFGKPF---DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS 144 (204)
T ss_pred EEEecCchhcc-CcHHHHhccCCCc---CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999885 6999999885332 11111111 11222222 34445667789999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367 150 GSRTVILDEPTSGVDPYSRRSIWE-LLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGK 208 (251)
Q Consensus 150 ~p~llllDEPt~gLD~~~~~~l~~-~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~ 208 (251)
+|+++||||||++||+.+++.+++ ++.++. +|.|||++||+++.+.. ||++++|++|+
T Consensus 145 ~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 145 DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 999999999999999999999998 456664 58999999999999998 99999999984
No 271
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.3e-49 Score=391.37 Aligned_cols=210 Identities=22% Similarity=0.348 Sum_probs=181.5
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++ ++++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++.. +...+|++|+|
T Consensus 478 I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 557 (710)
T TIGR03796 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAM 557 (710)
T ss_pred EEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeE
Confidence 478999999964 3679999999999999999999999999999999999999999999999999864 55678999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI-----------PHKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
|||++.+|+. |++||+.++.. ..+. +++.++++..++ +.........||||||||++|||||
T Consensus 558 v~Q~~~lf~g-Ti~eNi~l~~~--~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARal 630 (710)
T TIGR03796 558 VDQDIFLFEG-TVRDNLTLWDP--TIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARAL 630 (710)
T ss_pred EecCChhhhc-cHHHHhhCCCC--CCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHH
Confidence 9999999975 99999987521 1222 234455555544 3333445578999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+++|++||||||||+||+.+.+.+++.|++ .++|+|++||+++.+.. ||||++|++|++++.|+.+++.+
T Consensus 631 l~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 631 VRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred hhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999999999999999986 48999999999999875 99999999999999999987754
No 272
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=6.5e-50 Score=392.59 Aligned_cols=213 Identities=25% Similarity=0.425 Sum_probs=184.5
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++ .+++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++.. +...+|+.|+|
T Consensus 464 I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~ 543 (694)
T TIGR03375 464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGY 543 (694)
T ss_pred EEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEE
Confidence 478999999963 3579999999999999999999999999999999999999999999999999865 55678999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-----------cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-----------HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
|||++.+|+. |++||+.++.. ..+. +++.++++..++. .........||||||||++|||||
T Consensus 544 v~Q~~~lf~~-TI~eNi~~~~~--~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARal 616 (694)
T TIGR03375 544 VPQDPRLFYG-TLRDNIALGAP--YADD----EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARAL 616 (694)
T ss_pred ECCChhhhhh-hHHHHHhCCCC--CCCH----HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999986 99999987532 1222 3344555555543 333444568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+.+|+++|||||||+||+.+.+.+.+.|.++.+++|+|++||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus 617 l~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 617 LRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999999888999999999999875 6999999999999999998877543
No 273
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.6e-49 Score=386.52 Aligned_cols=215 Identities=25% Similarity=0.375 Sum_probs=189.5
Q ss_pred EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--eeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS--SGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++|++++|+ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.. ..+++++|++
T Consensus 71 ~~~l~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~---~~~~~i~yv~ 146 (659)
T PLN03211 71 ISDETRQIQ-ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK---QILKRTGFVT 146 (659)
T ss_pred cccccccCC-CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch---hhccceEEEC
Confidence 457788886 478999999999999999999999999999999999999885 9999999998742 3456799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHHHcCCCcccC-----CCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLK---QVPKDLAQLEISNMIVDLGIPHKRT-----SLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
|++.+++.+||+||+.+....+ ....++..++++++++.+||.+..+ +.+..||||||||++||++|+.+|+
T Consensus 147 Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~ 226 (659)
T PLN03211 147 QDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 226 (659)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCC
Confidence 9999999999999999876543 2234445567899999999987664 4567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHH-HHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMD-EADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+|||||||+|||+.++..+++.|++++ +|+|||++||+++ ++.++||++++|++|++++.|+++++.+.
T Consensus 227 iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~ 297 (659)
T PLN03211 227 LLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAY 297 (659)
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHH
Confidence 999999999999999999999999986 5999999999998 58899999999999999999998776544
No 274
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.8e-49 Score=338.24 Aligned_cols=199 Identities=23% Similarity=0.309 Sum_probs=166.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-----hHHhhcc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-----MTTIRRS 75 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~~ 75 (251)
+.+.|++++|+++.++++++||+|++||+++|+|||||||||||++|+|+++|++|+|+++|+++... ....++.
T Consensus 1 ~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 1 VQVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred CeeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 46889999997556799999999999999999999999999999999999999999999999876431 1224568
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHH
Q psy7367 76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVA 144 (251)
Q Consensus 76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia 144 (251)
++|++|++.++ +.|++||+.+.... .. .+..++++.+++.+ ..++++.+||+|||||++||
T Consensus 81 i~~~~q~~~~~-~~t~~~nl~~~~~~---~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03290 81 VAYAAQKPWLL-NATVEENITFGSPF---NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVA 152 (218)
T ss_pred EEEEcCCCccc-cccHHHHHhhcCcC---CH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHH
Confidence 99999999888 57999999875321 11 12234455555432 23567899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHH--HHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367 145 MAFIGGSRTVILDEPTSGVDPYSRRSIWE--LLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGK 208 (251)
Q Consensus 145 ~al~~~p~llllDEPt~gLD~~~~~~l~~--~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~ 208 (251)
|||+.+|+++||||||++||+.++..+++ +++.++ .|.|||++||+++.+. .||++++|++|.
T Consensus 153 ral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 153 RALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred HHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 99999999999999999999999999998 666665 4899999999999986 699999999874
No 275
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.8e-49 Score=357.61 Aligned_cols=187 Identities=28% Similarity=0.402 Sum_probs=169.9
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHH
Q psy7367 32 FLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL 111 (251)
Q Consensus 32 liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~ 111 (251)
|+||||||||||||+|+|+++|++|+|.++|+++.... ..+++++|+||++.+|+++||+||+.|+...++....+..+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~-~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 68999999999999999999999999999999985422 23578999999999999999999999987655555555566
Q ss_pred HHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeC
Q psy7367 112 EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTH 189 (251)
Q Consensus 112 ~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tH 189 (251)
++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+|||+.+++.+++.|+++. + |.|||++||
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTH 159 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 78999999999999999999999999999999999999999999999999999999999999999984 4 899999999
Q ss_pred CHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 190 YMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 190 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|++++..+|||+++|++|+++..|+++++.
T Consensus 160 d~~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 160 DQEEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999987653
No 276
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-49 Score=377.10 Aligned_cols=204 Identities=23% Similarity=0.359 Sum_probs=177.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|+ ++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|. ..|+|+|
T Consensus 2 l~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~~ 70 (530)
T PRK15064 2 LSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----------ERLGKLR 70 (530)
T ss_pred EEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------CEEEEEe
Confidence 57999999996 478999999999999999999999999999999999999999999999862 3599999
Q ss_pred cCCCCCCCCCHHHHHHHHHH-h----------cCCC---------------------hHHHHHHHHHHHHHcCCCccc-C
Q psy7367 81 QYNALFDKLTVEEHMWFYSQ-L----------KQVP---------------------KDLAQLEISNMIVDLGIPHKR-T 127 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~-~----------~~~~---------------------~~~~~~~~~~~l~~~~l~~~~-~ 127 (251)
|++.+++.+||+||+.+... . ...+ ..+.++++.++++.+|+.+.. +
T Consensus 71 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 150 (530)
T PRK15064 71 QDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHY 150 (530)
T ss_pred ccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhc
Confidence 99999999999999986421 0 0000 012235688899999998643 5
Q ss_pred CCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367 128 SLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG 207 (251)
Q Consensus 128 ~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G 207 (251)
+++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|.+ .|.|||+||||++++.++||++++|++|
T Consensus 151 ~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~l~~g 228 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMADLDYG 228 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEeCC
Confidence 78999999999999999999999999999999999999999999999974 4899999999999999999999999999
Q ss_pred EEE-eecCHHH
Q psy7367 208 KLQ-CCGSSVF 217 (251)
Q Consensus 208 ~i~-~~g~~~~ 217 (251)
+++ +.|+++.
T Consensus 229 ~i~~~~g~~~~ 239 (530)
T PRK15064 229 ELRVYPGNYDE 239 (530)
T ss_pred EEEEecCCHHH
Confidence 994 7787653
No 277
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.8e-49 Score=380.67 Aligned_cols=212 Identities=25% Similarity=0.372 Sum_probs=182.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|++++|++++++|+|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++.. ....+|+.|+|+
T Consensus 335 I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 414 (588)
T PRK13657 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVV 414 (588)
T ss_pred EEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 4789999999644679999999999999999999999999999999999999999999999999865 456778999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI-----------PHKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
||++.+|+. |++||+.++.. ....+ ++.++++.+++ +.........||||||||++|||||+
T Consensus 415 ~Q~~~lf~~-Ti~~Ni~~~~~--~~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall 487 (588)
T PRK13657 415 FQDAGLFNR-SIEDNIRVGRP--DATDE----EMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALL 487 (588)
T ss_pred ecCcccccc-cHHHHHhcCCC--CCCHH----HHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 999999975 99999987521 12222 23444444443 33334445679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
++|+++|||||||+||+.+.+.+++.|.++.+++|+|++||+++.+. .||++++|++|++++.|+.+++..
T Consensus 488 ~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 488 KDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999998877899999999998875 699999999999999999877643
No 278
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.2e-49 Score=339.29 Aligned_cols=192 Identities=24% Similarity=0.386 Sum_probs=168.5
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCC--CCCHHHHHHHHH
Q psy7367 22 VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD--KLTVEEHMWFYS 99 (251)
Q Consensus 22 l~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~--~ltv~e~l~~~~ 99 (251)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+++++|+||++.+++ .+|+.||+.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch----HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 578999999999999999999999999999999999999998763 24578999999987643 479999998753
Q ss_pred Hh----cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy7367 100 QL----KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175 (251)
Q Consensus 100 ~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l 175 (251)
.. .........+++.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||++||+.+++.+.++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l 156 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF 156 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 21 11122233456889999999998889999999999999999999999999999999999999999999999999
Q ss_pred Hhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 176 IKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 176 ~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
++++ +|.|||++|||++++.++||+++++ +|+++..|+++++
T Consensus 157 ~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 157 IELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 9985 5899999999999999999999999 8999999987765
No 279
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.2e-49 Score=378.38 Aligned_cols=210 Identities=20% Similarity=0.344 Sum_probs=180.5
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hH-HhhcceEEE
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MT-TIRRSLGVC 79 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~-~~~~~i~~v 79 (251)
+++|+++ .+|+++||+|++||+++|+||||||||||+|+|+|+.+|++|+|+++|+++... .. ..+++|+|+
T Consensus 270 ~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v 343 (510)
T PRK15439 270 TVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYL 343 (510)
T ss_pred EEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEEC
Confidence 4666662 269999999999999999999999999999999999999999999999988542 22 235689999
Q ss_pred ccCC---CCCCCCCHHHHHHHHHH--hc-CCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 80 PQYN---ALFDKLTVEEHMWFYSQ--LK-QVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 80 ~q~~---~l~~~ltv~e~l~~~~~--~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
||++ .+++.+|+.+|+..... .. .......+++++++++.+++. ...++++.+|||||||||+|||||+.+|+
T Consensus 344 ~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~ 423 (510)
T PRK15439 344 PEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQ 423 (510)
T ss_pred CCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCC
Confidence 9985 58888999999864311 11 111222345688999999997 78899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 217 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 217 (251)
+|||||||+|||+.+++.++++|++++ +|.|||++|||++++.++|||+++|++|+++..|+++.
T Consensus 424 lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 424 LLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred EEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 999999999999999999999999985 58999999999999999999999999999999887754
No 280
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.4e-49 Score=391.08 Aligned_cols=213 Identities=23% Similarity=0.401 Sum_probs=183.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|++++|+.++++|+|+||+|++|+.++|+||||||||||+|+|+|+++|++|+|+++|.++.. +...+|++||||
T Consensus 474 I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v 553 (708)
T TIGR01193 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYL 553 (708)
T ss_pred EEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEE
Confidence 5789999999655789999999999999999999999999999999999999999999999999864 556788999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI-----------PHKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
||++.+|+. |++||+.++.. ...+. +++.++++..++ +.........||||||||++||||++
T Consensus 554 ~Q~~~lf~g-TI~eNi~l~~~-~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall 627 (708)
T TIGR01193 554 PQEPYIFSG-SILENLLLGAK-ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALL 627 (708)
T ss_pred ecCceehhH-HHHHHHhccCC-CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHh
Confidence 999999986 99999988632 11222 234444554444 33344456789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
++|++||||||||+||+.+.+.+.+.|.++ +++|+|++||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus 628 ~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 628 TDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHH-cCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999886 5899999999999885 6999999999999999998877543
No 281
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.6e-49 Score=377.84 Aligned_cols=204 Identities=24% Similarity=0.280 Sum_probs=177.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++||+++|++++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++ ...|||+|
T Consensus 7 l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~----------~~~i~~v~ 76 (556)
T PRK11819 7 YTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP----------GIKVGYLP 76 (556)
T ss_pred EEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------CCEEEEEe
Confidence 57899999996247899999999999999999999999999999999999999999999864 14699999
Q ss_pred cCCCCCCCCCHHHHHHHHHH-hc-------------CCCh----------------------HHHHHHHHHHHHHcCCCc
Q psy7367 81 QYNALFDKLTVEEHMWFYSQ-LK-------------QVPK----------------------DLAQLEISNMIVDLGIPH 124 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~-~~-------------~~~~----------------------~~~~~~~~~~l~~~~l~~ 124 (251)
|++.+++.+||.||+.++.. +. .... .+..+++.++++.+++..
T Consensus 77 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 156 (556)
T PRK11819 77 QEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP 156 (556)
T ss_pred cCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc
Confidence 99999999999999987431 10 1110 012356788999999964
Q ss_pred ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAII 204 (251)
Q Consensus 125 ~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l 204 (251)
.++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++. .|||++|||++++..+||++++|
T Consensus 157 -~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d~i~~l 233 (556)
T PRK11819 157 -WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAGWILEL 233 (556)
T ss_pred -ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEEEE
Confidence 788999999999999999999999999999999999999999999999999884 59999999999999999999999
Q ss_pred eCCEEE-eecCHHH
Q psy7367 205 AAGKLQ-CCGSSVF 217 (251)
Q Consensus 205 ~~G~i~-~~g~~~~ 217 (251)
++|+++ +.|+.+.
T Consensus 234 ~~g~i~~~~g~~~~ 247 (556)
T PRK11819 234 DRGRGIPWEGNYSS 247 (556)
T ss_pred eCCEEEEecCCHHH
Confidence 999986 6777653
No 282
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.9e-49 Score=390.05 Aligned_cols=211 Identities=23% Similarity=0.388 Sum_probs=179.7
Q ss_pred CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~ 77 (251)
++++||+++|++ ++++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....++++|+
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 558 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVA 558 (711)
T ss_pred EEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhce
Confidence 578999999964 2579999999999999999999999999999999999999999999999999864 5567889999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHH
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~a 146 (251)
|++|++.+|+. |++||+.++.. ..+ ++++.++++..++.+ .......+||||||||++||||
T Consensus 559 ~v~Q~~~lF~g-TIreNI~~g~~--~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARA 631 (711)
T TIGR00958 559 LVGQEPVLFSG-SVRENIAYGLT--DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARA 631 (711)
T ss_pred EEecCcccccc-CHHHHHhcCCC--CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHH
Confidence 99999999975 99999988632 122 234555666655543 3333456899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
++++|+++|||||||+||+.+.+.+.+ ....+++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 632 Ll~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 632 LVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred HhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEeeCHHHHHhC
Confidence 999999999999999999999999988 22336899999999999886 5999999999999999999887554
No 283
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=8e-49 Score=375.30 Aligned_cols=215 Identities=24% Similarity=0.427 Sum_probs=185.1
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++ ++++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+++.++|
T Consensus 317 i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~ 396 (544)
T TIGR01842 317 LSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGY 396 (544)
T ss_pred EEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEE
Confidence 478999999964 3579999999999999999999999999999999999999999999999999864 44567889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p 151 (251)
+||++.+|+. |++||+.++.. ....++..+ .+.+.++.+ |++.........||||||||++||||++.+|
T Consensus 397 v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 397 LPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred ecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999986 99999986431 122222211 234556666 6666677778899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+++||||||++||+.+++.+.+.|.++. +++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 474 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999999999999985 6899999999999765 69999999999999999987654
No 284
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=8.5e-49 Score=378.03 Aligned_cols=217 Identities=23% Similarity=0.327 Sum_probs=184.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|++++|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+++.++|+
T Consensus 335 i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 414 (585)
T TIGR01192 335 VEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATV 414 (585)
T ss_pred EEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 4789999999654579999999999999999999999999999999999999999999999999864 445678899999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
||++.+|+ .|++||+.++.. ..+.++..+. +.+.+..+ |++.........||||||||++|||||+.+|+
T Consensus 415 ~q~~~lf~-~ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ 491 (585)
T TIGR01192 415 FQDAGLFN-RSIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAP 491 (585)
T ss_pred ccCCccCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999987 599999988532 1222222221 12223332 45555667788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
++||||||++||+.+++.+.+.|.++.+++|||++||+++.+. .||++++|++|++++.|+.+++.+.
T Consensus 492 ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 492 ILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEEEECCHHHHHHC
Confidence 9999999999999999999999998877999999999999986 5999999999999999998877543
No 285
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-49 Score=374.19 Aligned_cols=212 Identities=19% Similarity=0.333 Sum_probs=181.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch-HHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM-TTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~-~~~~~~i~~ 78 (251)
++++|++++| +.+|+++||+|++||+++|+||||||||||+|+|+|+.+|++|+|+++|+++.. .. ...++.++|
T Consensus 251 i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 327 (491)
T PRK10982 251 LEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFAL 327 (491)
T ss_pred EEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEE
Confidence 4688999874 359999999999999999999999999999999999999999999999998854 22 234677999
Q ss_pred EccCC---CCCCCCCHHHHHHH-----HHHhcCC-ChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 79 CPQYN---ALFDKLTVEEHMWF-----YSQLKQV-PKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 79 v~q~~---~l~~~ltv~e~l~~-----~~~~~~~-~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
+||++ .+|+++|+.+|..+ .....+. .....++++.++++.+++. +..++++.+|||||||||+||||++
T Consensus 328 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 407 (491)
T PRK10982 328 VTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLL 407 (491)
T ss_pred cCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHh
Confidence 99985 47888888877422 2111121 2233445688899999995 5679999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~ 215 (251)
.+|++|||||||+|||+.+++.++++|.++. +|.|||++|||++++..+|||+++|++|+++..++.
T Consensus 408 ~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 408 TQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred cCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 9999999999999999999999999999985 599999999999999999999999999999977654
No 286
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=9.6e-49 Score=320.22 Aligned_cols=159 Identities=26% Similarity=0.504 Sum_probs=148.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h-HHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M-TTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~-~~~~~~i~~ 78 (251)
++++|++++|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... . ...++.++|
T Consensus 1 l~~~~l~~~~~~-~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFGG-VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 579999999964 6899999999999999999999999999999999999999999999999988542 2 234678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
+|| ||+|||||++|||||+.+|+++||||
T Consensus 80 ~~q---------------------------------------------------LS~G~~qrl~laral~~~p~illlDE 108 (163)
T cd03216 80 VYQ---------------------------------------------------LSVGERQMVEIARALARNARLLILDE 108 (163)
T ss_pred EEe---------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 999 99999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEe
Q psy7367 159 PTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQC 211 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~ 211 (251)
||++||+.+++.+.++|++++ ++.|||++|||++++..+||++++|++|++++
T Consensus 109 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 109 PTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999985 58999999999999999999999999999874
No 287
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-49 Score=341.19 Aligned_cols=211 Identities=29% Similarity=0.402 Sum_probs=196.5
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc-cCCCCCCCCCHHH
Q psy7367 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP-QYNALFDKLTVEE 93 (251)
Q Consensus 15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~-q~~~l~~~ltv~e 93 (251)
.+++|+||+|++|+++|++|||||||||+||+|+|++.|++|.|.++|++...+..++-+++++|+ |...++..+.+.|
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 489999999999999999999999999999999999999999999999998665566667888875 6677887888999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7367 94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173 (251)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~ 173 (251)
-+.....++.++.+..+++.+.+.+.+++++..+.++..||-|||.|+.||.||+++|++|+|||||-|||..++..+.+
T Consensus 118 s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~ 197 (325)
T COG4586 118 SLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIRE 197 (325)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHH
Confidence 98888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcCc
Q psy7367 174 LLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARG 225 (251)
Q Consensus 174 ~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 225 (251)
.++++. .++||+++||+++.++++||||++|+.|+++++|+...+...|+..
T Consensus 198 Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~ 251 (325)
T COG4586 198 FLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251 (325)
T ss_pred HHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCc
Confidence 999985 4999999999999999999999999999999999999988887653
No 288
>KOG0058|consensus
Probab=100.00 E-value=2.5e-49 Score=375.43 Aligned_cols=217 Identities=23% Similarity=0.396 Sum_probs=188.3
Q ss_pred CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~ 77 (251)
|+++||+|.|+.+ .++|+|+||+|+|||++||+||||+||||+.++|-.++.|++|+|.+||+|+.. +...+|++||
T Consensus 466 IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig 545 (716)
T KOG0058|consen 466 IEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIG 545 (716)
T ss_pred EEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHee
Confidence 5799999999753 469999999999999999999999999999999999999999999999999975 6677899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGG 150 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~ 150 (251)
+|-|+|.||.. |++|||.|+.. ....++.... +.+.+..| |.+..-..+..+||||||||+||||||+++
T Consensus 546 ~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~ 622 (716)
T KOG0058|consen 546 LVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRN 622 (716)
T ss_pred eeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcC
Confidence 99999999986 99999999765 3333333222 22333333 334444556679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 151 SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
|.+|||||.||+||.++...+-+.|.+..+++|||++.|.+..++. ||+|+++++|++++.|+.+++.+.
T Consensus 623 P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~eLl~~ 692 (716)
T KOG0058|consen 623 PRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDELLSK 692 (716)
T ss_pred CCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEEecccHHHHhhC
Confidence 9999999999999999999999999999888999999999999985 999999999999999998877554
No 289
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=3e-49 Score=379.68 Aligned_cols=213 Identities=23% Similarity=0.404 Sum_probs=183.2
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. ....++++|+|
T Consensus 331 i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~ 410 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVAL 410 (571)
T ss_pred EEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceE
Confidence 478999999953 3579999999999999999999999999999999999999999999999999864 45677889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCccc-----------CCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR-----------TSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~kqrv~ia~al 147 (251)
+||++.+|+. |++||+.++.. ...+ .+++.++++.+++.+.. ......||||||||++||||+
T Consensus 411 v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal 484 (571)
T TIGR02203 411 VSQDVVLFND-TIANNIAYGRT-EQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL 484 (571)
T ss_pred EccCcccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 9999999976 99999987531 0122 23456666666654332 223357999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+.+|+++|||||||+||+.+.+.+++.|.++.+++|+|++||+.+.+. .||+|++|++|++++.|+.+++.+
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEEeeCCHHHHHH
Confidence 999999999999999999999999999999878899999999998875 699999999999999999887643
No 290
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-49 Score=326.20 Aligned_cols=220 Identities=23% Similarity=0.350 Sum_probs=200.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcc-eeCCCC--hHHhhcceE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN-HDIRTD--MTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g-~~~~~~--~~~~~~~i~ 77 (251)
++++|++++|+ +..+|+++||++.+||.-+|||||||||||+|.+|+|-.+|+.|+|+++| .++... ..-.|..||
T Consensus 6 L~~~~vsVsF~-GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIG 84 (249)
T COG4674 6 LYLDGVSVSFG-GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIG 84 (249)
T ss_pred EEEeceEEEEc-ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccC
Confidence 47899999996 48899999999999999999999999999999999999999999999999 788652 234577999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLK--------QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG 149 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~ 149 (251)
--||.|..|+++||+||+.+..... .....+.+++++++|...+|.+..++....||.||||++.|++.+++
T Consensus 85 RKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q 164 (249)
T COG4674 85 RKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQ 164 (249)
T ss_pred ccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeecc
Confidence 9999999999999999998865421 12233445689999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+|++|+||||++|+-....++.-++|+.++...+|+++.|||.++..+|++|.+|+.|.+.++|+.+++.+.
T Consensus 165 ~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 165 DPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred CCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999887654
No 291
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-48 Score=373.40 Aligned_cols=201 Identities=25% Similarity=0.316 Sum_probs=177.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ +.+||+|
T Consensus 320 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----------~~i~~~~ 388 (530)
T PRK15064 320 LEVENLTKGFDN-GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN----------ANIGYYA 388 (530)
T ss_pred EEEEeeEEeeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----------eEEEEEc
Confidence 478999999964 67999999999999999999999999999999999999999999999762 4699999
Q ss_pred cCCC--CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 81 QYNA--LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 81 q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
|++. +++.+|+.||+.+... .. ...+++.++++.+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 389 q~~~~~~~~~~t~~~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLD 463 (530)
T PRK15064 389 QDHAYDFENDLTLFDWMSQWRQ---EG--DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMD 463 (530)
T ss_pred ccccccCCCCCcHHHHHHHhcc---CC--ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9974 5667999999865321 11 1234678899999995 6789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE-eecCHHHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ-CCGSSVFLK 219 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 219 (251)
|||++||+.+++.++++|+++ +.|||++|||++++..+|||+++|++|+++ +.|++..+.
T Consensus 464 EPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 464 EPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred CCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 999999999999999999987 359999999999999999999999999997 788876553
No 292
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.4e-49 Score=372.74 Aligned_cols=212 Identities=20% Similarity=0.288 Sum_probs=177.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEEcceeCCC--ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-SSGTAKIYNHDIRT--DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~--~~~~~~~~i~ 77 (251)
|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++.. .....+++|+
T Consensus 261 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 339 (490)
T PRK10938 261 IVLNNGVVSYND-RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIG 339 (490)
T ss_pred EEEeceEEEECC-eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhce
Confidence 478999999964 6799999999999999999999999999999999998876 69999999987632 2223567899
Q ss_pred EEccCCCCCC--CCCHHHHHHHHHH----hcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367 78 VCPQYNALFD--KLTVEEHMWFYSQ----LKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGG 150 (251)
Q Consensus 78 ~v~q~~~l~~--~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~ 150 (251)
|++|++.++. ..++.+++.+... .+.......+++++++++.+++.+ ..++++.+|||||||||+|||||+.+
T Consensus 340 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~ 419 (490)
T PRK10938 340 YVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKH 419 (490)
T ss_pred EECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcC
Confidence 9999976543 3467666654321 111112233457889999999987 88999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CC-CeEEEEeCCHHHHHh-hcCEEEEeeCCEEEeec
Q psy7367 151 SRTVILDEPTSGVDPYSRRSIWELLIKYK-KG-RTVILTTHYMDEADL-LGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 151 p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g-~tiii~tHd~~~~~~-~~d~i~~l~~G~i~~~g 213 (251)
|++|||||||+|||+.+++.++++|++++ ++ .|||++|||++++.. +||++++|++|+++..-
T Consensus 420 p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 420 PTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 99999999999999999999999999985 44 579999999999987 59999999999987653
No 293
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.8e-48 Score=373.57 Aligned_cols=204 Identities=24% Similarity=0.271 Sum_probs=176.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++||+++|++++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ +..|||+|
T Consensus 5 i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~----------~~~i~~v~ 74 (552)
T TIGR03719 5 YTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----------GIKVGYLP 74 (552)
T ss_pred EEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------CCEEEEEe
Confidence 57899999996246799999999999999999999999999999999999999999999864 24699999
Q ss_pred cCCCCCCCCCHHHHHHHHHHh-c-------------CCChHH----------------------HHHHHHHHHHHcCCCc
Q psy7367 81 QYNALFDKLTVEEHMWFYSQL-K-------------QVPKDL----------------------AQLEISNMIVDLGIPH 124 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~-~-------------~~~~~~----------------------~~~~~~~~l~~~~l~~ 124 (251)
|++.+++++||.||+.++... . .....+ ...++.++++.+++..
T Consensus 75 Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 154 (552)
T TIGR03719 75 QEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP 154 (552)
T ss_pred ccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc
Confidence 999999999999999874321 0 011110 1245677888888864
Q ss_pred ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAII 204 (251)
Q Consensus 125 ~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l 204 (251)
.++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++. .|||+||||++++..+||++++|
T Consensus 155 -~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 155 -WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFLDNVAGWILEL 231 (552)
T ss_pred -ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEEEE
Confidence 688999999999999999999999999999999999999999999999998874 59999999999999999999999
Q ss_pred eCCEEE-eecCHHH
Q psy7367 205 AAGKLQ-CCGSSVF 217 (251)
Q Consensus 205 ~~G~i~-~~g~~~~ 217 (251)
++|+++ +.|+.+.
T Consensus 232 ~~g~i~~~~g~~~~ 245 (552)
T TIGR03719 232 DRGRGIPWEGNYSS 245 (552)
T ss_pred ECCEEEEecCCHHH
Confidence 999976 6777653
No 294
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.3e-48 Score=320.32 Aligned_cols=164 Identities=27% Similarity=0.374 Sum_probs=149.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|++
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----------~~i~~~~ 70 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----------EDLLFLP 70 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----------ceEEEEC
Confidence 579999999954467999999999999999999999999999999999999999999999762 5799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.++ .+|+.||+.++ ++.+||||||||++|||||+.+|+++||||||
T Consensus 71 q~~~~~-~~tv~~nl~~~------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 71 QRPYLP-LGTLREQLIYP------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred CCCccc-cccHHHHhhcc------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 998865 57999999753 46899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367 161 SGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~ 208 (251)
++||+.+++.+.++++++ +.|+|++|||++.+ .+||++++|+++.
T Consensus 120 ~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 120 SALDEESEDRLYQLLKEL--GITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred cccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 999999999999999887 68999999999876 5899999998763
No 295
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-50 Score=342.73 Aligned_cols=206 Identities=23% Similarity=0.401 Sum_probs=182.2
Q ss_pred eEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----ChHHhhcceEEE
Q psy7367 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----DMTTIRRSLGVC 79 (251)
Q Consensus 5 ~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----~~~~~~~~i~~v 79 (251)
|+.+++| ..+ =+++|+.+.-.+++|.|+||||||||+|+|+|+.+|+.|.|.++|+-+.. ..+.-+++||||
T Consensus 5 ~~~~~lG--~~~-l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYV 81 (352)
T COG4148 5 NFRQRLG--NFA-LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYV 81 (352)
T ss_pred ehhhhcC--ceE-EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeE
Confidence 3445553 334 36799999867999999999999999999999999999999999987632 122346889999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP 159 (251)
||+..|||++||+.|+.|+.... .....+++.+.+|+.++++++|..|||||||||+|+|||+..|++||||||
T Consensus 82 FQDARLFpH~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEP 155 (352)
T COG4148 82 FQDARLFPHYTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEP 155 (352)
T ss_pred eeccccccceEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCc
Confidence 99999999999999999976532 234578889999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhC--CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 160 TSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 160 t~gLD~~~~~~l~~~l~~l~~--g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
.|+||..-+++++-+|.++++ +..|+++||.++++.++||++++|++|++.+.|+.+++-
T Consensus 156 LaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~ 217 (352)
T COG4148 156 LASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVW 217 (352)
T ss_pred hhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHh
Confidence 999999999999999999963 899999999999999999999999999999999987653
No 296
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-48 Score=328.02 Aligned_cols=190 Identities=22% Similarity=0.291 Sum_probs=166.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ +.+++ +||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|.++... .++.++|++
T Consensus 2 l~~~~l~~~~~~-~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~---~~~~~~~~~ 76 (195)
T PRK13541 2 LSLHQLQFNIEQ-KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI---AKPYCTYIG 76 (195)
T ss_pred eEEEEeeEEECC-cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh---hhhhEEecc
Confidence 578999999964 55555 9999999999999999999999999999999999999999999887432 134689999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+||.||+.+....++ ..+++.++++.+++.+..++++.+||+|||||++||||++.+|+++||||||
T Consensus 77 ~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~ 151 (195)
T PRK13541 77 HNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVE 151 (195)
T ss_pred CCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99888888999999988654432 1245778899999998889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEE
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRI 201 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i 201 (251)
++||+.+++.+.+++++.. ++.|||++||+++++.. ||.+
T Consensus 152 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 152 TNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence 9999999999999998764 58999999999998876 7654
No 297
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.9e-50 Score=322.56 Aligned_cols=203 Identities=22% Similarity=0.381 Sum_probs=182.9
Q ss_pred EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEcc
Q psy7367 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQ 81 (251)
Q Consensus 3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q 81 (251)
++++.+.-+ +..+|+++||++.+||+++|+||||||||||+|+++-|++|++|+++|.|+++.. ....+|++|+|+.|
T Consensus 6 ~kq~~y~a~-~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q 84 (223)
T COG4619 6 LKQVGYLAG-DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQ 84 (223)
T ss_pred HHHHHhhcC-CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHc
Confidence 344444443 4679999999999999999999999999999999999999999999999999975 56788999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 82 YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 82 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
.|.||++ ||++|+.|+..++.... .++++.++++++++.+ .+++++.+||||||||++|+|-|..-|++|||||||
T Consensus 85 ~paLfg~-tVeDNlifP~~~r~rr~--dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 85 TPALFGD-TVEDNLIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred Ccccccc-chhhccccchHHhccCC--ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 9999987 99999999988765332 3456789999999975 578899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhh-h-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367 161 SGVDPYSRRSIWELLIKY-K-KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l-~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i 209 (251)
|+||+.+.+.+-++|.++ + +..+|+++|||.+++.+++|+++-+..|.+
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 999999999999999887 4 489999999999999999999999999876
No 298
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=4.1e-48 Score=376.88 Aligned_cols=217 Identities=23% Similarity=0.420 Sum_probs=194.4
Q ss_pred CEEEeEEEEeCC---CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHH----h
Q psy7367 1 MAIQNLSKRFPN---GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTT----I 72 (251)
Q Consensus 1 l~i~~l~~~y~~---~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~----~ 72 (251)
|+++|++++|++ .+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...+ .
T Consensus 5 l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~ 84 (648)
T PRK10535 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLR 84 (648)
T ss_pred EEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHH
Confidence 578999999953 1469999999999999999999999999999999999999999999999999854 2222 2
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
++.++|+||++.+|+++|+.||+.+.....+....+.++++.++++.+++.+..++++.+||+||+||++|||||+.+|+
T Consensus 85 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~ 164 (648)
T PRK10535 85 REHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQ 164 (648)
T ss_pred hccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999986655454445556678999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
++||||||+|||+.+++.+.+++++++ +|.|+|++||+++.+. .|||+++|++|++++.|++++.
T Consensus 165 lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 165 VILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCcccc
Confidence 999999999999999999999999985 5999999999999886 6999999999999999987654
No 299
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=8.9e-49 Score=384.56 Aligned_cols=217 Identities=24% Similarity=0.412 Sum_probs=184.6
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++ ++.+|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++.. +...+|+.|+|
T Consensus 456 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~ 535 (694)
T TIGR01846 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGV 535 (694)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeE
Confidence 578999999953 3569999999999999999999999999999999999999999999999999865 55678899999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p 151 (251)
|||++.+|+. |++||+.++.. ..+.++..+ .+.+.++.+ |++.........||||||||++|||||+++|
T Consensus 536 v~q~~~lf~~-ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~ 612 (694)
T TIGR01846 536 VLQENVLFSR-SIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612 (694)
T ss_pred EccCCeehhh-hHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 9999999975 99999987431 122222211 122333333 4555555667799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++.+.
T Consensus 613 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 613 RILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHHHHHHc
Confidence 999999999999999999999999998778999999999999865 999999999999999998877543
No 300
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.1e-48 Score=373.12 Aligned_cols=212 Identities=24% Similarity=0.394 Sum_probs=181.8
Q ss_pred CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~ 77 (251)
++++|++++|+++ +.+|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|+++|.++.. ....+++.|+
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 417 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMA 417 (576)
T ss_pred EEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhce
Confidence 5789999999632 569999999999999999999999999999999999999999999999999864 4566788999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCcCChhHHHHHHHHHH
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI-----------PHKRTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~kqrv~ia~a 146 (251)
|+||++.+|+. |++||+.++.. ..+. +++.++++.+++ +.........||||||||++||||
T Consensus 418 ~~~Q~~~lf~~-Ti~~Ni~~~~~--~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRa 490 (576)
T TIGR02204 418 LVPQDPVLFAA-SVMENIRYGRP--DATD----EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARA 490 (576)
T ss_pred EEccCCccccc-cHHHHHhcCCC--CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHH
Confidence 99999999975 99999987531 1122 234455555554 333334456799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
++.+|+++|||||||+||+.+.+.+++.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 491 l~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 491 ILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEeeecHHHHHH
Confidence 9999999999999999999999999999999877899999999998875 699999999999999999876643
No 301
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.7e-48 Score=372.51 Aligned_cols=212 Identities=23% Similarity=0.356 Sum_probs=182.3
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|+. ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. +...+++.++|
T Consensus 314 I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 393 (569)
T PRK10789 314 LDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAV 393 (569)
T ss_pred EEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEE
Confidence 478999999964 2579999999999999999999999999999999999999999999999999854 45567889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC-----------CcccCCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI-----------PHKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
+||++.+|+. |++||+.++.. .... +++.++++..++ +...+.....||||||||++|||||
T Consensus 394 v~q~~~lf~~-ti~~Ni~~~~~--~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARal 466 (569)
T PRK10789 394 VSQTPFLFSD-TVANNIALGRP--DATQ----QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARAL 466 (569)
T ss_pred EccCCeeccc-cHHHHHhcCCC--CCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 9999999975 99999987532 1222 233444444443 3344456678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+.+++.+
T Consensus 467 l~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 467 LLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999999999999999999878999999999998886 599999999999999999877644
No 302
>KOG0057|consensus
Probab=100.00 E-value=7.4e-49 Score=361.94 Aligned_cols=211 Identities=25% Similarity=0.430 Sum_probs=186.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
|+++|++++|+.++++|+++||+|++||-+||+|+|||||||++|+|.++.. ++|+|++||+++.. ....+|+.||||
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~V 430 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVV 430 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEe
Confidence 5789999999865669999999999999999999999999999999999999 99999999999965 567789999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCcCChhHHHHHHHHHHHc
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK-----------RTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
||+..||++ ||.+|+.++... .+. +++.++.++.++.+. ...+...|||||||||+||||++
T Consensus 431 PQd~~LFnd-TIl~NI~YGn~s--as~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~l 503 (591)
T KOG0057|consen 431 PQDSVLFND-TILYNIKYGNPS--ASD----EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFL 503 (591)
T ss_pred CCcccccch-hHHHHhhcCCCC--cCH----HHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHh
Confidence 999999986 999999986432 122 345566666666543 34455689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
.+|+++++|||||+||.++.+.+++.+.....++|+|++-|++..+.. ||+|+++++|++.+.|+.+++-.
T Consensus 504 Kda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 504 KDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred cCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999999999997679999999999999986 99999999999999999887654
No 303
>KOG0055|consensus
Probab=100.00 E-value=5.3e-49 Score=390.91 Aligned_cols=217 Identities=26% Similarity=0.422 Sum_probs=185.6
Q ss_pred CEEEeEEEEeCCCc--ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNGK--LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~~--~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~ 77 (251)
++++||+|+|+.+. .+|+++||.|++|+.++|+|||||||||++++|.+++.|++|+|+++|.++.. +.+.+|.+||
T Consensus 351 ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ig 430 (1228)
T KOG0055|consen 351 IEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIG 430 (1228)
T ss_pred eEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcC
Confidence 58999999997643 69999999999999999999999999999999999999999999999999975 5677899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGG 150 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~ 150 (251)
.|+|+|.||. .|++||+.|+..- ...++..+. +.+.+..+ |++......-.+||||||||+||||||+.+
T Consensus 431 lV~QePvlF~-~tI~eNI~~G~~d--at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~ 507 (1228)
T KOG0055|consen 431 LVSQEPVLFA-TTIRENIRYGKPD--ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRN 507 (1228)
T ss_pred eeeechhhhc-ccHHHHHhcCCCc--ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhC
Confidence 9999998886 6999999986421 112221111 22222322 344444555667999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 151 SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
|++||||||||+||+++.+.+.+.|.+..+|+|.|+++|++..+.. +|+|++|++|+|++.|+++++-..
T Consensus 508 P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 508 PKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIAL 577 (1228)
T ss_pred CCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhc
Confidence 9999999999999999999999999999999999999999999987 999999999999999999887554
No 304
>KOG0059|consensus
Probab=100.00 E-value=1e-48 Score=391.55 Aligned_cols=233 Identities=39% Similarity=0.691 Sum_probs=218.6
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh--HHhhcceEEE
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM--TTIRRSLGVC 79 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~~i~~v 79 (251)
.++|++|.|+..+.|++++|+.|++|||.|++|||||||||++|+|+|..+|++|+++++|.++.... ...++.+||+
T Consensus 566 ~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyC 645 (885)
T KOG0059|consen 566 VLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYC 645 (885)
T ss_pred EEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccC
Confidence 57899999964323999999999999999999999999999999999999999999999999997533 3478999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP 159 (251)
||...+++.+|.+|++.+++++++.++.+..+.++.+++.++|.+..+++++.||||+|+|+++|.|++.+|++++||||
T Consensus 646 PQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEP 725 (885)
T KOG0059|consen 646 PQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEP 725 (885)
T ss_pred CchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCC
Confidence 99999999999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcCcceEEEecch
Q psy7367 160 TSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKS 234 (251)
Q Consensus 160 t~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 234 (251)
|+|+||.+|+.+|+++.++++ |+.||++||.|++++.+|||+.+|.+|++.+.|++++++++++.+|.+++....
T Consensus 726 stGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~gy~l~~~~~~ 801 (885)
T KOG0059|consen 726 STGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGSGYTLTVRIKE 801 (885)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcCCcEEEEEEECC
Confidence 999999999999999999965 569999999999999999999999999999999999999999999988876554
No 305
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.5e-48 Score=335.44 Aligned_cols=195 Identities=22% Similarity=0.284 Sum_probs=164.7
Q ss_pred EeCCCcceeeeeeEEEe-----CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCC
Q psy7367 9 RFPNGKLAVNGLNVNFY-----EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYN 83 (251)
Q Consensus 9 ~y~~~~~il~~isl~i~-----~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~ 83 (251)
+|++....+++++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .|+|++|++
T Consensus 2 ~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----------~i~~~~q~~ 70 (246)
T cd03237 2 TYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----------TVSYKPQYI 70 (246)
T ss_pred CCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----------eEEEecccc
Confidence 45433446777777776 79999999999999999999999999999999999874 589999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCC
Q psy7367 84 ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV 163 (251)
Q Consensus 84 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gL 163 (251)
.+++.+||.||+.+....... ......++++.+++.+..++++.+|||||||||+||+||+.+|+++||||||++|
T Consensus 71 ~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~L 146 (246)
T cd03237 71 KADYEGTVRDLLSSITKDFYT----HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYL 146 (246)
T ss_pred cCCCCCCHHHHHHHHhhhccc----cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 877789999999765432211 1123577899999998899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE--eecCHHHH
Q psy7367 164 DPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQ--CCGSSVFL 218 (251)
Q Consensus 164 D~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~--~~g~~~~~ 218 (251)
|+.++..+.++|+++. .++|||++|||++++..+||++++|+++..+ ..+++..+
T Consensus 147 D~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 147 DVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 9999999999999984 3899999999999999999999999765433 33455443
No 306
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=6.7e-48 Score=328.13 Aligned_cols=192 Identities=16% Similarity=0.118 Sum_probs=164.7
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-EcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE 93 (251)
Q Consensus 15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 93 (251)
++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++|..+ .+.+.+.+++.+|+.|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL------------PLGANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee------------ccccccccCCcCcHHH
Confidence 379999999999999999999999999999999999999999997 766432 1234567888999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7367 94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173 (251)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~ 173 (251)
|+.+....++....+. ...+.+.++++...++++.+||+|||||++|||||+.+|+++||||||+++|+.+++.+.+
T Consensus 69 nl~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~ 145 (213)
T PRK15177 69 NARMMASLYGLDGDEF---SHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQA 145 (213)
T ss_pred HHHHHHHHcCCCHHHH---HHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHH
Confidence 9999776655443322 2234456788888899999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 174 ~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
.+.+..++.++|++||+++++..+||++++|++|++++.++.+...+.
T Consensus 146 ~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 193 (213)
T PRK15177 146 ALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATAL 193 (213)
T ss_pred HHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHH
Confidence 886654457899999999999999999999999999999998766543
No 307
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-48 Score=335.13 Aligned_cols=184 Identities=26% Similarity=0.438 Sum_probs=167.7
Q ss_pred CEEEeEEEEeCCC--------cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHh
Q psy7367 1 MAIQNLSKRFPNG--------KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~--------~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 72 (251)
++++||++.|..+ ..+++||||+|++||++||+|+||||||||-|+|+||++|++|+|+|+|+++....
T Consensus 5 l~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--- 81 (268)
T COG4608 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--- 81 (268)
T ss_pred EEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc---
Confidence 5789999999532 37999999999999999999999999999999999999999999999999864311
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p 151 (251)
..+..+++.++|+.+|+. +.++++|++|||||+||++|||||+.+|
T Consensus 82 ---------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P 128 (268)
T COG4608 82 ---------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNP 128 (268)
T ss_pred ---------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCC
Confidence 334456799999999997 4889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+++++|||+|+||...+.+++++|.+++ + |.|.+++|||+..+..+|||+.+|..|+|++.|+.+++..
T Consensus 129 ~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 129 KLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred cEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999999999999999996 3 9999999999999999999999999999999999876644
No 308
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-49 Score=362.85 Aligned_cols=212 Identities=25% Similarity=0.454 Sum_probs=187.3
Q ss_pred CEEEeEEEEeCCCc-ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~-~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++.+ ++|+|+||++++||.++|+|++|||||||+++|.|.++|++|+|.++|.++.. +..++|+.|++
T Consensus 337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~v 416 (573)
T COG4987 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISV 416 (573)
T ss_pred eeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhh
Confidence 47899999997543 69999999999999999999999999999999999999999999999999865 44567889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCccc-----------CCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR-----------TSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~kqrv~ia~al 147 (251)
++|.+.+|.. |+++|+.+...- .+ .+.+.++++++||.++. +.-...||||||||++|||+|
T Consensus 417 l~Qr~hlF~~-Tlr~NL~lA~~~--As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~L 489 (573)
T COG4987 417 LTQRVHLFSG-TLRDNLRLANPD--AS----DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARAL 489 (573)
T ss_pred hccchHHHHH-HHHHHHhhcCCC--CC----HHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHH
Confidence 9999999986 999999885321 12 24566778888776543 334578999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+++.+++||||||.|||+.+.+++++++.+..+|+|+||+||++..++. ||||++|++|+++++|++.++..
T Consensus 490 L~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~-~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 490 LHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER-MDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh-cCEEEEEECCeeeecCCHHhhhc
Confidence 9999999999999999999999999999998889999999999999985 99999999999999999987754
No 309
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.8e-48 Score=344.84 Aligned_cols=220 Identities=23% Similarity=0.407 Sum_probs=197.7
Q ss_pred CEEEeEEEEeCC--C--------cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---
Q psy7367 1 MAIQNLSKRFPN--G--------KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT--- 67 (251)
Q Consensus 1 l~i~~l~~~y~~--~--------~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--- 67 (251)
++.+++...|.- + ..+++++||++++||.+||+|.||||||||=++|.+|+++. |+|+|.|+++..
T Consensus 277 l~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~ 355 (534)
T COG4172 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSR 355 (534)
T ss_pred EEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccCh
Confidence 467888888832 1 25899999999999999999999999999999999999876 999999999963
Q ss_pred -ChHHhhcceEEEccCC--CCCCCCCHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHH
Q psy7367 68 -DMTTIRRSLGVCPQYN--ALFDKLTVEEHMWFYSQLKQ--VPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKL 141 (251)
Q Consensus 68 -~~~~~~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv 141 (251)
....+|+++-.|||+| +|-|.|||.+.+.-++..+. .+..+..+++.++|+.+||+ ...+++|+++|||||||+
T Consensus 356 ~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRI 435 (534)
T COG4172 356 KEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRI 435 (534)
T ss_pred hhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHH
Confidence 2345688999999998 68899999999999888754 56777788999999999998 467899999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 142 SVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 142 ~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+||||++.+|++++||||||+||..-+.+++++|++++ + |.+-+++|||+..+..+||+++||++|+|++.|+.+.+.
T Consensus 436 AIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 436 AIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred HHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence 99999999999999999999999999999999999985 3 999999999999999999999999999999999988765
Q ss_pred hh
Q psy7367 220 NS 221 (251)
Q Consensus 220 ~~ 221 (251)
..
T Consensus 516 ~~ 517 (534)
T COG4172 516 AN 517 (534)
T ss_pred cC
Confidence 54
No 310
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.5e-47 Score=367.43 Aligned_cols=203 Identities=25% Similarity=0.333 Sum_probs=176.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++ + ..|||+|
T Consensus 325 l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~---------~~i~~v~ 393 (556)
T PRK11819 325 IEAENLSKSFGD-RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T---------VKLAYVD 393 (556)
T ss_pred EEEEeEEEEECC-eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c---------eEEEEEe
Confidence 478999999964 6799999999999999999999999999999999999999999999843 2 1599999
Q ss_pred cCC-CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 81 QYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 81 q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
|++ .+++.+||.||+.+.....+.... ...+..+++.+++.. ..++++.+|||||||||+|||||+.+|++|||||
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 471 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDE 471 (556)
T ss_pred CchhhcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 996 788889999999886533222211 123557899999974 5789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC-CEEE-eecCHHHH
Q psy7367 159 PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA-GKLQ-CCGSSVFL 218 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~-G~i~-~~g~~~~~ 218 (251)
||+|||+.++..++++|.++. + |||++|||++++..+||++++|++ |++. +.|+..+.
T Consensus 472 Pt~~LD~~~~~~l~~~l~~~~-~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 472 PTNDLDVETLRALEEALLEFP-G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred CCCCCCHHHHHHHHHHHHhCC-C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHH
Confidence 999999999999999999884 4 899999999999999999999996 7876 56776543
No 311
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2e-47 Score=366.35 Aligned_cols=203 Identities=26% Similarity=0.332 Sum_probs=175.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|++++ + .+|||+|
T Consensus 323 l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~---------~~i~~v~ 391 (552)
T TIGR03719 323 IEAENLSKGFGD-KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T---------VKLAYVD 391 (552)
T ss_pred EEEeeEEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c---------eEEEEEe
Confidence 478999999964 6899999999999999999999999999999999999999999999843 2 1599999
Q ss_pred cCC-CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 81 QYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 81 q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
|++ .+++.+||.||+.++....+.... ..++.++++.+++.. ..++++.+|||||||||+|||||+.+|++|||||
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDE 469 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE 469 (552)
T ss_pred CCccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 997 478889999999886533222221 223567899999974 5789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC-CEEE-eecCHHHH
Q psy7367 159 PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA-GKLQ-CCGSSVFL 218 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~-G~i~-~~g~~~~~ 218 (251)
||+|||+.+++.++++|+++. + |||++|||++++..+||++++|++ |++. +.|+..+.
T Consensus 470 Pt~~LD~~~~~~l~~~l~~~~-~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~ 529 (552)
T TIGR03719 470 PTNDLDVETLRALEEALLEFA-G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEY 529 (552)
T ss_pred CCCCCCHHHHHHHHHHHHHCC-C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHH
Confidence 999999999999999999984 3 899999999999999999999987 5776 56766543
No 312
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.4e-47 Score=335.69 Aligned_cols=195 Identities=22% Similarity=0.338 Sum_probs=164.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|+++. + +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .|+|++
T Consensus 40 l~i~nls~~--~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------~i~yv~ 104 (282)
T cd03291 40 LFFSNLCLV--G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------RISFSS 104 (282)
T ss_pred EEEEEEEEe--c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------EEEEEe
Confidence 578999985 2 5699999999999999999999999999999999999999999999987 389999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHHcc
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAFIG 149 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al~~ 149 (251)
|++.+++. |++||+.+..... . .++.++++.+++.+ ..++++.+||+|||||++|||||+.
T Consensus 105 q~~~l~~~-tv~enl~~~~~~~---~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 105 QFSWIMPG-TIKENIIFGVSYD---E----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred Cccccccc-CHHHHhhcccccC---H----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 99988875 9999998743211 1 11223333333322 2344568999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH-HhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 150 GSRTVILDEPTSGVDPYSRRSIWELL-IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 150 ~p~llllDEPt~gLD~~~~~~l~~~l-~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+|++|||||||+|||+.++..+++.+ .+++++.|||++||+++++. .||++++|++|+++..|+++++.
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999865 56666899999999999985 79999999999999999987654
No 313
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.1e-47 Score=335.23 Aligned_cols=201 Identities=23% Similarity=0.320 Sum_probs=172.0
Q ss_pred EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-----------EcceeCCCChHHh
Q psy7367 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-----------IYNHDIRTDMTTI 72 (251)
Q Consensus 4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~-----------~~g~~~~~~~~~~ 72 (251)
.|++++|++++.+|+|+|+ +++||+++|+||||||||||||+|+|+++|++|+|+ ++|+++.......
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4799999643469999994 999999999999999999999999999999999996 7787764322222
Q ss_pred h---cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc
Q psy7367 73 R---RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG 149 (251)
Q Consensus 73 ~---~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~ 149 (251)
+ ..++|++|...+++. ++.+++.+... .......+.++++.+++.+..++++.+||+|||||++|||||+.
T Consensus 83 ~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~-----~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 156 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPK-AVKGKVGELLK-----KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALAR 156 (255)
T ss_pred hhcccceeeecchhccCch-HHHHHHHHHhc-----hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 2 247999999888874 88888876432 22334568899999999988899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367 150 GSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC 212 (251)
Q Consensus 150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~ 212 (251)
+|+++||||||++||+.++..+.++|++++ +++|||++|||++++..+||++++|+ |++.+.
T Consensus 157 ~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 157 DADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence 999999999999999999999999999986 48999999999999999999999995 556543
No 314
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2e-47 Score=364.32 Aligned_cols=196 Identities=26% Similarity=0.428 Sum_probs=169.7
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|+++ +++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....+|++++|
T Consensus 321 i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~ 400 (529)
T TIGR02857 321 LEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAW 400 (529)
T ss_pred EEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEE
Confidence 4789999999643 479999999999999999999999999999999999999999999999999865 45678899999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al 147 (251)
++|++.+|+. |++||+.++.. ..+. +++.++++..++.+ ........||||||||++|||||
T Consensus 401 v~Q~~~lf~~-ti~~Ni~~~~~--~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal 473 (529)
T TIGR02857 401 VPQHPFLFAG-TIAENIRLARP--DASD----AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAF 473 (529)
T ss_pred EcCCCcccCc-CHHHHHhccCC--CCCH----HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHH
Confidence 9999999975 99999988532 1122 34556666665543 33344578999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAII 204 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l 204 (251)
+++|+++|||||||+||+.+.+.+.+.+.++.+++|+|++||+++.+. .||+|++|
T Consensus 474 ~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 474 LRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 999999999999999999999999999999878999999999999885 69999875
No 315
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=6e-47 Score=367.05 Aligned_cols=207 Identities=27% Similarity=0.363 Sum_probs=186.6
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEcceeCCCChHHhhcceEEEccCCCCCCCC
Q psy7367 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS---SGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKL 89 (251)
Q Consensus 13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l 89 (251)
++++|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.++|+++.. ...++.+||++|++.+++.+
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~--~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA--KEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH--HHHhhhceeeccccccCccC
Confidence 467999999999999999999999999999999999998885 8999999998742 34677899999999999999
Q ss_pred CHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCCcccCCCCC------cCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 90 TVEEHMWFYSQLKQ---VPKDLAQLEISNMIVDLGIPHKRTSLAN------TLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 90 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
||+||+.|...++. ...++..++++++++.+||.+..++.++ .|||||||||+||++|+.+|++++|||||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 99999999876542 3345556689999999999998888887 49999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHH-HHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMD-EADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+|||+.++..+++.|++++ +|+|||+++|++. ++.++||++++|++|++++.|+++++...
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~ 257 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPF 257 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHH
Confidence 9999999999999999986 4999999999995 78889999999999999999998776543
No 316
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.7e-47 Score=398.05 Aligned_cols=212 Identities=22% Similarity=0.332 Sum_probs=185.7
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
|+++||+++|+.+ +++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.. +...+|++|+|
T Consensus 1235 I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~i 1314 (1495)
T PLN03232 1235 IKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSI 1314 (1495)
T ss_pred EEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEE
Confidence 5789999999533 579999999999999999999999999999999999999999999999999965 56778999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al 147 (251)
|||+|.+|+. |++|||.++. ..+. +++.++++..++.+ ........||||||||++|||||
T Consensus 1315 VpQdp~LF~g-TIr~NL~~~~---~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARAL 1386 (1495)
T PLN03232 1315 IPQSPVLFSG-TVRFNIDPFS---EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL 1386 (1495)
T ss_pred ECCCCeeeCc-cHHHHcCCCC---CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999986 9999997642 2222 34556666665543 33344568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+++|++||||||||+||+++.+.+.+.|++..+++|||+|+|+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 1387 Lr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl~~ 1459 (1495)
T PLN03232 1387 LRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSR 1459 (1495)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999998779999999999999986 999999999999999999887543
No 317
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.4e-47 Score=365.39 Aligned_cols=184 Identities=24% Similarity=0.430 Sum_probs=159.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++||+++|++++++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++..-...+|++|+|||
T Consensus 335 I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~ 414 (529)
T TIGR02868 335 LELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFA 414 (529)
T ss_pred EEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEc
Confidence 47899999997546799999999999999999999999999999999999999999999999998644567789999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCccc-----------CCCCCcCChhHHHHHHHHHHHcc
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR-----------TSLANTLSGGMQRKLSVAMAFIG 149 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~kqrv~ia~al~~ 149 (251)
|++.+|+. |++||+.++.. ..+ ++++.++++..++.+.. ......||||||||++|||||++
T Consensus 415 Q~~~lF~~-TI~eNI~~g~~--~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~ 487 (529)
T TIGR02868 415 QDAHLFDT-TVRDNLRLGRP--DAT----DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA 487 (529)
T ss_pred cCcccccc-cHHHHHhccCC--CCC----HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc
Confidence 99999986 99999988531 112 23466667776664432 23345799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCH
Q psy7367 150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYM 191 (251)
Q Consensus 150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~ 191 (251)
+|++||||||||+||+.+.+.+.+.+.++.+++|+|++||++
T Consensus 488 ~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 488 DAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999888899999999974
No 318
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.4e-47 Score=397.53 Aligned_cols=211 Identities=21% Similarity=0.336 Sum_probs=185.4
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
|+++||+++|+.+ +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. +...+|++|++
T Consensus 1238 I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Isi 1317 (1622)
T PLN03130 1238 IKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGI 1317 (1622)
T ss_pred EEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEE
Confidence 5789999999543 469999999999999999999999999999999999999999999999999975 56788999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al 147 (251)
|||+|.+|+. |++|||.++. .... +++.++++..++.+ ........||||||||++|||||
T Consensus 1318 VpQdp~LF~G-TIreNLd~~~---~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARAL 1389 (1622)
T PLN03130 1318 IPQAPVLFSG-TVRFNLDPFN---EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARAL 1389 (1622)
T ss_pred ECCCCccccc-cHHHHhCcCC---CCCH----HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHH
Confidence 9999999987 9999997642 1222 34556666655533 33334468999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+++|++||||||||+||+.+.+.+.+.|++..+++|||+|+|+++.+.. ||||++|++|++++.|+++++.+
T Consensus 1390 Lr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1390 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999998779999999999999986 99999999999999999987754
No 319
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=7.6e-47 Score=361.91 Aligned_cols=201 Identities=20% Similarity=0.320 Sum_probs=174.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|++++|++++++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.++|+++.. ....++++|+|+
T Consensus 323 i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 402 (547)
T PRK10522 323 LELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAV 402 (547)
T ss_pred EEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEE
Confidence 4789999999644579999999999999999999999999999999999999999999999999864 455778899999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCC-----CCcCChhHHHHHHHHHHHccCCCEE
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL-----ANTLSGGMQRKLSVAMAFIGGSRTV 154 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~kqrv~ia~al~~~p~ll 154 (251)
+|++.+|+. |+++| . . ....+.+.++++.+++....+.. ...||||||||++||||++++|+++
T Consensus 403 ~q~~~lf~~-ti~~n---~---~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~il 471 (547)
T PRK10522 403 FTDFHLFDQ-LLGPE---G---K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDIL 471 (547)
T ss_pred ecChhHHHH-hhccc---c---C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999875 88887 1 1 12234577889999887654322 3589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhh-h-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 155 ILDEPTSGVDPYSRRSIWELLIKY-K-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 155 llDEPt~gLD~~~~~~l~~~l~~l-~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
|||||||+||+.+.+.+.+.+.+. + +++|+|++||+++.+. .||++++|++|++++..
T Consensus 472 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 472 LLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELT 531 (547)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEec
Confidence 999999999999999999998765 4 4899999999998765 79999999999998763
No 320
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=8.9e-47 Score=363.22 Aligned_cols=194 Identities=21% Similarity=0.288 Sum_probs=172.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++ . .|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ .+++|+|
T Consensus 341 l~~~~ls~~~~~-~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~------------~~i~y~~ 406 (590)
T PRK13409 341 VEYPDLTKKLGD-F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------------LKISYKP 406 (590)
T ss_pred EEEcceEEEECC-E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe------------eeEEEec
Confidence 478999999953 3 5999999999999999999999999999999999999999999985 1499999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++++||+||+.+..... .. ...+.++++.+++.+..++++.+|||||||||+||+||+.+|++|||||||
T Consensus 407 Q~~~~~~~~tv~e~l~~~~~~~--~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt 481 (590)
T PRK13409 407 QYIKPDYDGTVEDLLRSITDDL--GS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPS 481 (590)
T ss_pred ccccCCCCCcHHHHHHHHhhhc--Ch---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9998888899999998753222 11 124678999999998899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~ 214 (251)
++||+.++..+.++|+++. + |.|||++|||++++..+|||+++|++ ++...|+
T Consensus 482 ~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 482 AHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 9999999999999999984 3 89999999999999999999999965 7766554
No 321
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-46 Score=365.12 Aligned_cols=199 Identities=23% Similarity=0.346 Sum_probs=174.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. .++||++
T Consensus 313 l~~~~l~~~y~-~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~igy~~ 381 (638)
T PRK10636 313 LKMEKVSAGYG-DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG----------IKLGYFA 381 (638)
T ss_pred EEEEeeEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC----------EEEEEec
Confidence 47899999996 478999999999999999999999999999999999999999999998631 2599999
Q ss_pred cCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 81 QYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 81 q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
|++ .+.+..|+.+++.. .. ......++.++++.|++. +..++++.+|||||||||+||++|+.+|++||||
T Consensus 382 Q~~~~~l~~~~~~~~~~~~---~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLD 455 (638)
T PRK10636 382 QHQLEFLRADESPLQHLAR---LA---PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLD 455 (638)
T ss_pred CcchhhCCccchHHHHHHH---hC---chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 974 35566788877642 11 122345688999999996 4688999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE-eecCHHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ-CCGSSVFL 218 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 218 (251)
|||++||+.++..+.++|.++ . .|||+||||++++..+||++++|++|+++ +.|+.++.
T Consensus 456 EPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 456 EPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred CCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 999999999999999999998 3 49999999999999999999999999997 78887655
No 322
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.5e-47 Score=393.74 Aligned_cols=212 Identities=22% Similarity=0.384 Sum_probs=181.6
Q ss_pred CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-------------------------
Q psy7367 1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV------------------------- 53 (251)
Q Consensus 1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p------------------------- 53 (251)
|+++||+|+|++ ++++|+|+||+|++|+++||+||||||||||+++|+|++.|
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGD 1245 (1466)
T ss_pred EEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccc
Confidence 578999999963 24799999999999999999999999999999999999998
Q ss_pred -----------------------------CeeEEEEcceeCCC-ChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcC
Q psy7367 54 -----------------------------SSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ 103 (251)
Q Consensus 54 -----------------------------~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~ 103 (251)
++|+|+++|.++.. +...+|+.||||+|+|.||+ .|++|||.++.. .
T Consensus 1246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~--~ 1322 (1466)
T PTZ00265 1246 EEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE--D 1322 (1466)
T ss_pred cccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC--C
Confidence 69999999999965 56788999999999999997 599999999632 1
Q ss_pred CChHHHHHHHHHHHHHcCC-----------CcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q psy7367 104 VPKDLAQLEISNMIVDLGI-----------PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172 (251)
Q Consensus 104 ~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~ 172 (251)
... ++++++++..++ +.........||||||||++|||||+++|++||||||||+||+.+.+.+.
T Consensus 1323 at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~ 1398 (1466)
T PTZ00265 1323 ATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIE 1398 (1466)
T ss_pred CCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence 222 234555555444 33334455679999999999999999999999999999999999999999
Q ss_pred HHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeC----CEEE-eecCHHHHHh
Q psy7367 173 ELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAA----GKLQ-CCGSSVFLKN 220 (251)
Q Consensus 173 ~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~----G~i~-~~g~~~~~~~ 220 (251)
+.|.++. +++|+|+|||+++.+. .||+|++|++ |+++ +.|+.+++..
T Consensus 1399 ~~L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1399 KTIVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9999984 5899999999999986 5999999999 8955 8999887754
No 323
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2e-46 Score=364.52 Aligned_cols=202 Identities=24% Similarity=0.293 Sum_probs=175.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++||+++|++ +++|+++||+|++|++++|+||||||||||||+|+|+++|++|+|++ |.++ .|||++
T Consensus 320 l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~---------~i~y~~ 388 (635)
T PRK11147 320 FEMENVNYQIDG-KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL---------EVAYFD 388 (635)
T ss_pred EEEeeeEEEECC-eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc---------EEEEEe
Confidence 478999999964 77999999999999999999999999999999999999999999998 5322 599999
Q ss_pred cCC-CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 81 QYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 81 q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
|++ .+++.+||.||+.+........ .....+.++++.+++. +..++++.+|||||||||+||+||+.+|++|||||
T Consensus 389 q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDE 466 (635)
T PRK11147 389 QHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDE 466 (635)
T ss_pred CcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 986 5888999999998753211111 1134578899999996 56789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee-CCEEEe-ecCHHH
Q psy7367 159 PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA-AGKLQC-CGSSVF 217 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~-~G~i~~-~g~~~~ 217 (251)
||++||+.++..+.++++++ +.|||+||||.+++..+||++++|+ +|++.. .|+..+
T Consensus 467 Pt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 467 PTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred CCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 99999999999999999887 4599999999999999999999998 899864 565543
No 324
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.3e-46 Score=335.08 Aligned_cols=221 Identities=24% Similarity=0.411 Sum_probs=194.7
Q ss_pred CEEEeEEEEeC---CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CeeEEEEcceeCCC-ChH-
Q psy7367 1 MAIQNLSKRFP---NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SSGTAKIYNHDIRT-DMT- 70 (251)
Q Consensus 1 l~i~~l~~~y~---~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-----~~G~i~~~g~~~~~-~~~- 70 (251)
++++|+++.|. +...++++|||+|.+||.++|+|.||||||-..+.++||++. -+|+|.|+|+++-. ..+
T Consensus 7 L~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~ 86 (534)
T COG4172 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ 86 (534)
T ss_pred eeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHH
Confidence 57899999994 236799999999999999999999999999999999999864 37999999999843 222
Q ss_pred --Hhh-cceEEEccCC--CCCCCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHHHcCCCc---ccCCCCCcCChhHHHHH
Q psy7367 71 --TIR-RSLGVCPQYN--ALFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIVDLGIPH---KRTSLANTLSGGMQRKL 141 (251)
Q Consensus 71 --~~~-~~i~~v~q~~--~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSgG~kqrv 141 (251)
.+| .+|+++||+| +|-|-.|+...+.-..++ ++...+++++++.++|+.+|+.+ .++.+|++|||||||||
T Consensus 87 lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRV 166 (534)
T COG4172 87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRV 166 (534)
T ss_pred HhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHH
Confidence 333 4899999998 566667888888777665 46778888899999999999964 56789999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 142 SVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 142 ~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+||.||+++|++||.||||++||...+.+|+++|++++ + |.+++++|||+..+.++||||.||.+|++++.|+.+.+.
T Consensus 167 MIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 167 MIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred HHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHh
Confidence 99999999999999999999999999999999999995 4 999999999999999999999999999999999987664
Q ss_pred hh
Q psy7367 220 NS 221 (251)
Q Consensus 220 ~~ 221 (251)
..
T Consensus 247 ~~ 248 (534)
T COG4172 247 AA 248 (534)
T ss_pred hC
Confidence 43
No 325
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-47 Score=321.44 Aligned_cols=213 Identities=23% Similarity=0.309 Sum_probs=187.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch-HHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM-TTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~-~~~~~~i~~ 78 (251)
|+++|++.+|+ ++++|+|+|++|++||-.+|+|||||||||||++++|.++|++|.+.+.|+...+ .. .++|++|||
T Consensus 32 i~l~~v~v~r~-gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~ 110 (257)
T COG1119 32 IELKNVSVRRN-GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGL 110 (257)
T ss_pred EEecceEEEEC-CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCc
Confidence 57899999996 5899999999999999999999999999999999999999999999999998854 33 688999999
Q ss_pred EccC--CCCCCCCCHHHHHHHHHH----hcC-CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367 79 CPQY--NALFDKLTVEEHMWFYSQ----LKQ-VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 79 v~q~--~~l~~~ltv~e~l~~~~~----~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p 151 (251)
|.-. ..+.+..+|+|-+.-+.. ++. ...+...+++..+++.+|+.+..+++..+||-||||||.|||||+.+|
T Consensus 111 vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P 190 (257)
T COG1119 111 VSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDP 190 (257)
T ss_pred cCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCC
Confidence 9753 345566788887754321 122 334556678999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhh-C--CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYK-K--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~--g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~ 214 (251)
++|||||||+|||..+++.+.+.|.++. . +.++|+|||..+++-...++++.+++|+++..|.
T Consensus 191 ~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 191 ELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999984 2 7899999999999999999999999999998763
No 326
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.7e-46 Score=358.69 Aligned_cols=201 Identities=20% Similarity=0.303 Sum_probs=173.8
Q ss_pred CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcc
Q psy7367 1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRS 75 (251)
Q Consensus 1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~ 75 (251)
++++|++++|++. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+++.
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~ 417 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDL 417 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhh
Confidence 4689999999642 259999999999999999999999999999999999999999999999999965 44567889
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCC------CCcCChhHHHHHHHHHHHcc
Q psy7367 76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL------ANTLSGGMQRKLSVAMAFIG 149 (251)
Q Consensus 76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~LSgG~kqrv~ia~al~~ 149 (251)
++|++|++.+|++ |+++|.. .....+++.++++.+++.+..++. ...||||||||++||||++.
T Consensus 418 i~~v~q~~~lf~~-ti~~n~~---------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~ 487 (555)
T TIGR01194 418 FSAIFADFHLFDD-LIGPDEG---------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLE 487 (555)
T ss_pred CcEEccChhhhhh-hhhcccc---------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHc
Confidence 9999999999875 8888841 112345678899999998765443 35799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHH-hhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367 150 GSRTVILDEPTSGVDPYSRRSIWELLI-KYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC 212 (251)
Q Consensus 150 ~p~llllDEPt~gLD~~~~~~l~~~l~-~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~ 212 (251)
+|+++||||||++||+.+.+.+.+.+. .++ +++|+|++||+++.+. .||+|++|++|++++.
T Consensus 488 ~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 488 DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIVKD 551 (555)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence 999999999999999999999998664 454 5899999999998765 7999999999999864
No 327
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.9e-46 Score=386.65 Aligned_cols=212 Identities=23% Similarity=0.358 Sum_probs=189.6
Q ss_pred CEEEeEEEEeC---CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCeeEEEEcceeCCCChHHhhc
Q psy7367 1 MAIQNLSKRFP---NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP---VSSGTAKIYNHDIRTDMTTIRR 74 (251)
Q Consensus 1 l~i~~l~~~y~---~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 74 (251)
++++||++.|+ +++.+|+|||+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++.. ..++
T Consensus 760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~---~~~~ 836 (1394)
T TIGR00956 760 FHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS---SFQR 836 (1394)
T ss_pred EEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh---hhhc
Confidence 36899999994 23679999999999999999999999999999999999987 789999999998742 4578
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCCcccCCCCC----cCChhHHHHHHHHHHH
Q psy7367 75 SLGVCPQYNALFDKLTVEEHMWFYSQLKQ---VPKDLAQLEISNMIVDLGIPHKRTSLAN----TLSGGMQRKLSVAMAF 147 (251)
Q Consensus 75 ~i~~v~q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~LSgG~kqrv~ia~al 147 (251)
.+||++|++.+++.+||+||+.|...++. .+.++..++++++++.++|.+.+++.++ .|||||||||+||+||
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL 916 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVEL 916 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHH
Confidence 89999999988899999999999876542 3344555678999999999999998887 7999999999999999
Q ss_pred ccCCC-EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHH-HHhhcCEEEEeeCC-EEEeecCH
Q psy7367 148 IGGSR-TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDE-ADLLGDRIAIIAAG-KLQCCGSS 215 (251)
Q Consensus 148 ~~~p~-llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~-~~~~~d~i~~l~~G-~i~~~g~~ 215 (251)
+.+|+ +|+|||||+|||+.++..+++.|++++ +|+|||++||+++. +.+.||++++|++| ++++.|++
T Consensus 917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 99997 999999999999999999999999985 59999999999986 45789999999997 99999986
No 328
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.5e-46 Score=391.14 Aligned_cols=211 Identities=22% Similarity=0.372 Sum_probs=185.4
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
|+++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.. ....+|+.|+|
T Consensus 1309 I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~i 1388 (1560)
T PTZ00243 1309 LVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSM 1388 (1560)
T ss_pred EEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceE
Confidence 5789999999644 459999999999999999999999999999999999999999999999999965 56788999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCccc-------C----CCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR-------T----SLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSgG~kqrv~ia~al 147 (251)
|||+|.+|+. |++|||..+. ..+ .+++.++++..++.+.. + .....||||||||++|||||
T Consensus 1389 VpQdp~LF~g-TIreNIdp~~---~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARAL 1460 (1560)
T PTZ00243 1389 IPQDPVLFDG-TVRQNVDPFL---EAS----SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARAL 1460 (1560)
T ss_pred ECCCCccccc-cHHHHhCccc---CCC----HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHH
Confidence 9999999986 9999996532 222 24577778877775432 2 23357999999999999999
Q ss_pred ccC-CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 148 IGG-SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 148 ~~~-p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+++ |++||||||||+||+.+.+.+.+.|++..+++|||+|+|+++.+.. ||+|++|++|++++.|+++++..
T Consensus 1461 L~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1461 LKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred hcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence 995 9999999999999999999999999988778999999999999875 99999999999999999988754
No 329
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=359.20 Aligned_cols=202 Identities=21% Similarity=0.261 Sum_probs=168.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++||+++|++ +.+|+|+||+|++|+++||+||||||||||||+|+|+++|++|+|.++|.. .++|++
T Consensus 2 i~i~nls~~~g~-~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~----------~i~~~~ 70 (638)
T PRK10636 2 IVFSSLQIRRGV-RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW----------QLAWVN 70 (638)
T ss_pred EEEEEEEEEeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC----------EEEEEe
Confidence 579999999964 789999999999999999999999999999999999999999999998732 378888
Q ss_pred cCCCCCCCCCHHHHHHHH-----------------------HHhc----CCChHHHHHHHHHHHHHcCCC-cccCCCCCc
Q psy7367 81 QYNALFDKLTVEEHMWFY-----------------------SQLK----QVPKDLAQLEISNMIVDLGIP-HKRTSLANT 132 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~-----------------------~~~~----~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~ 132 (251)
|++..+ ..|+.+++.-. ..+. .........++.++++.+|+. +..++++.+
T Consensus 71 q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 149 (638)
T PRK10636 71 QETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSD 149 (638)
T ss_pred cCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhh
Confidence 864333 24555544210 0000 001112345788999999997 578999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE-e
Q psy7367 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ-C 211 (251)
Q Consensus 133 LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~-~ 211 (251)
|||||||||+||+||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++ +
T Consensus 150 LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~ 227 (638)
T PRK10636 150 FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEY 227 (638)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999887 469999999999999999999999999996 4
Q ss_pred ecCHH
Q psy7367 212 CGSSV 216 (251)
Q Consensus 212 ~g~~~ 216 (251)
.|+..
T Consensus 228 ~g~~~ 232 (638)
T PRK10636 228 TGNYS 232 (638)
T ss_pred cCCHH
Confidence 56643
No 330
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=9.4e-46 Score=386.95 Aligned_cols=212 Identities=19% Similarity=0.257 Sum_probs=185.3
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
|+++||+++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ....+|++|++
T Consensus 1285 I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~i 1364 (1522)
T TIGR00957 1285 VEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITI 1364 (1522)
T ss_pred EEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeE
Confidence 5789999999643 469999999999999999999999999999999999999999999999999975 56788999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al 147 (251)
|||+|.+|+. |++|||..+. ..+. +++.++++..++.+ ........||||||||++|||||
T Consensus 1365 VpQdp~LF~g-TIr~NLdp~~---~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARAL 1436 (1522)
T TIGR00957 1365 IPQDPVLFSG-SLRMNLDPFS---QYSD----EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARAL 1436 (1522)
T ss_pred ECCCCcccCc-cHHHHcCccc---CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHH
Confidence 9999999987 9999997432 2222 34556666665533 33334467999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+++|++||||||||+||+++.+.+.+.|++..+++|||+|+|+++.+.. ||||++|++|+|++.|+++++.+.
T Consensus 1437 Lr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1437 LRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999988789999999999999986 899999999999999999887543
No 331
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.4e-46 Score=387.81 Aligned_cols=205 Identities=21% Similarity=0.348 Sum_probs=173.4
Q ss_pred CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE-cceeCCC-ChHHhhcce
Q psy7367 1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI-YNHDIRT-DMTTIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~-~g~~~~~-~~~~~~~~i 76 (251)
|+++||+++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++ +|.++.. +...+|++|
T Consensus 383 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~I 462 (1466)
T PTZ00265 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKI 462 (1466)
T ss_pred EEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhc
Confidence 5789999999642 36999999999999999999999999999999999999999999999 4677753 445678899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhc-C---------C-----------------------------------------C
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQLK-Q---------V-----------------------------------------P 105 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~~-~---------~-----------------------------------------~ 105 (251)
|||+|++.+|+. |++||+.++.... + . .
T Consensus 463 g~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 541 (1466)
T PTZ00265 463 GVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNY 541 (1466)
T ss_pred cEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccc
Confidence 999999999975 9999999863100 0 0 0
Q ss_pred hHHHHHHHHHHHHHcCCCcc-----------cCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy7367 106 KDLAQLEISNMIVDLGIPHK-----------RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174 (251)
Q Consensus 106 ~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~ 174 (251)
.....+++.++++.+++.+. ..+.+.+||||||||++|||||+.+|++||||||||+||+.+...+.+.
T Consensus 542 ~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~ 621 (1466)
T PTZ00265 542 QTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKT 621 (1466)
T ss_pred ccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 00112456777777776543 3466789999999999999999999999999999999999999999999
Q ss_pred HHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367 175 LIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAG 207 (251)
Q Consensus 175 l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G 207 (251)
|.+++ +|+|+|++||+++.+ +.||+|++|++|
T Consensus 622 L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 622 INNLKGNENRITIIIAHRLSTI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 99985 489999999999998 579999999986
No 332
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.4e-45 Score=295.84 Aligned_cols=144 Identities=30% Similarity=0.452 Sum_probs=136.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+ +.++|+|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------~~i~~~~ 69 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------VKIGYFE 69 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------EEEEEEc
Confidence 579999999964 67999999999999999999999999999999999999999999999884 4699999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
| ||+||+||++|||||+.+|+++||||||
T Consensus 70 ~---------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 70 Q---------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred c---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 8 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367 161 SGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~ 208 (251)
++||+.++..+.+.++++ +.|||++||+++++..+||++++|++|+
T Consensus 99 ~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 99 NHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred cCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999987 4799999999999999999999999985
No 333
>KOG0055|consensus
Probab=100.00 E-value=4.8e-46 Score=369.89 Aligned_cols=219 Identities=28% Similarity=0.443 Sum_probs=190.0
Q ss_pred CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~ 77 (251)
++++||+|+|+.+ .+||+|+||++++|+.+||+|||||||||.+.+|-.++.|++|.|.+||+++++ +.+.+|++||
T Consensus 988 I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred EEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc
Confidence 5789999999743 469999999999999999999999999999999999999999999999999976 6778999999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-----------CCCcccCCCCCcCChhHHHHHHHHHH
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-----------GIPHKRTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~kqrv~ia~a 146 (251)
.|.|+|.||.. |++|||.|+. ...+.++ +.++++.. |++.....+..+||||||||+|||||
T Consensus 1068 lVsQEP~LF~~-TIrENI~YG~--~~vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1068 LVSQEPVLFNG-TIRENIAYGS--EEVSEEE----IIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred eeccCchhhcc-cHHHHHhccC--CCCCHHH----HHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHH
Confidence 99999999975 9999999982 2244433 33333332 34444455567999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcCcc
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGY 226 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 226 (251)
++++|++|||||.||+||.++.+.+-+.|.+...|+|.|+|.|.+..+.. ||.|+|+++|+|++.|+.+++-+. ++.
T Consensus 1141 ilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~~~--~G~ 1217 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELLAK--RGI 1217 (1228)
T ss_pred HHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHHhC--CCc
Confidence 99999999999999999999999999999999999999999999999975 999999999999999999888763 444
Q ss_pred eEE
Q psy7367 227 YLS 229 (251)
Q Consensus 227 ~~~ 229 (251)
|..
T Consensus 1218 Y~~ 1220 (1228)
T KOG0055|consen 1218 YFR 1220 (1228)
T ss_pred hHH
Confidence 433
No 334
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=4.1e-45 Score=357.87 Aligned_cols=200 Identities=23% Similarity=0.358 Sum_probs=170.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++++.+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|++++ +.+|||++
T Consensus 509 L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~----------~~~igyv~ 578 (718)
T PLN03073 509 ISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA----------KVRMAVFS 578 (718)
T ss_pred EEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC----------ceeEEEEe
Confidence 47899999995445699999999999999999999999999999999999999999999864 24699999
Q ss_pred cCCCCCCCCCHHHHHHHHH-H-hcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 81 QYNALFDKLTVEEHMWFYS-Q-LKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~-~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
|++ ++.+++.++..+.. . ..... .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus 579 Q~~--~~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLD 652 (718)
T PLN03073 579 QHH--VDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLD 652 (718)
T ss_pred ccc--cccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 986 24456666644322 1 11211 346788999999984 678999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE-eecCHHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ-CCGSSVFL 218 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 218 (251)
|||++||+.++..+.+.+.++ ++ |||++|||++++..+||++++|++|+++ +.|+....
T Consensus 653 EPT~~LD~~s~~~l~~~L~~~-~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 653 EPSNHLDLDAVEALIQGLVLF-QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCCCCCCHHHHHHHHHHHHHc-CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999988776 34 9999999999999999999999999998 67876644
No 335
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1e-45 Score=307.46 Aligned_cols=214 Identities=27% Similarity=0.399 Sum_probs=183.3
Q ss_pred CEEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChH-Hhhcc
Q psy7367 1 MAIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMT-TIRRS 75 (251)
Q Consensus 1 l~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~ 75 (251)
+++.|+.+.|..+ ++||+++|++|++|+++.|+|.||||||||+++|+|-++|++|+|.++|.++.+.+. .....
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~ 81 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhH
Confidence 4577888887432 579999999999999999999999999999999999999999999999999976433 33457
Q ss_pred eEEEccCC--CCCCCCCHHHHHHHHHHh---cCCCh---HHHHHHHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHH
Q psy7367 76 LGVCPQYN--ALFDKLTVEEHMWFYSQL---KQVPK---DLAQLEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAM 145 (251)
Q Consensus 76 i~~v~q~~--~l~~~ltv~e~l~~~~~~---~~~~~---~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~ 145 (251)
++-|||+| ..++.||++||+.+.... ++... ...++...+.+..+ |+++.++.+++-|||||||-++++.
T Consensus 82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~M 161 (263)
T COG1101 82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLM 161 (263)
T ss_pred HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHH
Confidence 89999998 569999999999986543 22222 22333455566666 5678999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367 146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214 (251)
Q Consensus 146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~ 214 (251)
|-+++|++|+|||-|++|||...+.++++-.++ .+ +.|.+||||+|+.+..|.+|.++|++|+|+.+-+
T Consensus 162 Atl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 162 ATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred HhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 999999999999999999999999999999987 44 8999999999999999999999999999987643
No 336
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-44 Score=304.09 Aligned_cols=218 Identities=22% Similarity=0.324 Sum_probs=192.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCeeEEEEcceeCCC-C-hHHhhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML--PVSSGTAKIYNHDIRT-D-MTTIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~--~p~~G~i~~~g~~~~~-~-~~~~~~~i 76 (251)
|+++||+.+-.+.+.+|++|||+|++||+++|+||||||||||.++|+|.. ++++|+|.++|+++.. + ..+.|..|
T Consensus 4 L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~Gi 83 (251)
T COG0396 4 LEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGI 83 (251)
T ss_pred eEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCC
Confidence 589999999954248999999999999999999999999999999999985 7899999999999965 2 24567899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCCc-ccCCCCC-cCChhHHHHHHHHHHHccCC
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQLKQVP---KDLAQLEISNMIVDLGIPH-KRTSLAN-TLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~-~~~~~~~-~LSgG~kqrv~ia~al~~~p 151 (251)
...||.|.=++..|+.+.|.......... ..+..+++++.++.+++++ +++|.+. .+|||||+|..|+++++.+|
T Consensus 84 fLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~leP 163 (251)
T COG0396 84 FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEP 163 (251)
T ss_pred EEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCC
Confidence 99999999999999999998876542211 2355678999999999986 7888886 89999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhc-CEEEEeeCCEEEeecCHHHH
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLG-DRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~-d~i~~l~~G~i~~~g~~~~~ 218 (251)
++.|||||-||||..+-+.+.+.+.+++ +|.+++++||.-..+..+- |++.+|.+|+|+..|.++..
T Consensus 164 kl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~el~ 232 (251)
T COG0396 164 KLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELA 232 (251)
T ss_pred CEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999997 4999999999988887653 99999999999999999543
No 337
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=9.3e-45 Score=376.19 Aligned_cols=213 Identities=21% Similarity=0.341 Sum_probs=186.2
Q ss_pred CEEEeEEEEeC------------CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEEcceeCC
Q psy7367 1 MAIQNLSKRFP------------NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV--SSGTAKIYNHDIR 66 (251)
Q Consensus 1 l~i~~l~~~y~------------~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~ 66 (251)
++++||++..+ +++.+|+|+|+++++|++++|+|||||||||||++|+|..++ .+|+|.++|++..
T Consensus 868 ~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~ 947 (1470)
T PLN03140 868 MSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 947 (1470)
T ss_pred EEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCC
Confidence 35788888863 124699999999999999999999999999999999999763 7899999998763
Q ss_pred CChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHHHcCCCcccCCCC-----CcCChhHH
Q psy7367 67 TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK---QVPKDLAQLEISNMIVDLGIPHKRTSLA-----NTLSGGMQ 138 (251)
Q Consensus 67 ~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~k 138 (251)
. ...++.+||++|++.+++.+||+||+.|...++ ..+.++..+.++++++.++|.+..++.+ ..||||||
T Consensus 948 ~--~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 948 Q--ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred h--HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 2 235678999999999999999999999976543 2233445567899999999998888876 58999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHH-HHHhhcCEEEEeeC-CEEEeecCH
Q psy7367 139 RKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMD-EADLLGDRIAIIAA-GKLQCCGSS 215 (251)
Q Consensus 139 qrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 215 (251)
|||+||++|+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++ ++..+||++++|++ |++++.|++
T Consensus 1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCc
Confidence 99999999999999999999999999999999999999985 5999999999998 57789999999996 899999985
No 338
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.3e-44 Score=351.79 Aligned_cols=201 Identities=20% Similarity=0.268 Sum_probs=164.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.. .++|++
T Consensus 4 l~i~~ls~~~~~-~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~----------~~~~l~ 72 (635)
T PRK11147 4 ISIHGAWLSFSD-APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL----------IVARLQ 72 (635)
T ss_pred EEEeeEEEEeCC-ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC----------EEEEec
Confidence 578999999964 789999999999999999999999999999999999999999999997631 256666
Q ss_pred cCCCCCCCCCHHHHH------------------------------HHHHHh----cCCChHHHHHHHHHHHHHcCCCccc
Q psy7367 81 QYNALFDKLTVEEHM------------------------------WFYSQL----KQVPKDLAQLEISNMIVDLGIPHKR 126 (251)
Q Consensus 81 q~~~l~~~ltv~e~l------------------------------~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~ 126 (251)
|.+......++.+++ .++..+ ..........++.++++.+|+. .
T Consensus 73 q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~ 150 (635)
T PRK11147 73 QDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--P 150 (635)
T ss_pred cCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--C
Confidence 654322223444443 111111 0001112345788999999997 3
Q ss_pred CCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367 127 TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA 206 (251)
Q Consensus 127 ~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~ 206 (251)
++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|+++. .|||+||||.+++..+||++++|++
T Consensus 151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~d~i~~L~~ 228 (635)
T PRK11147 151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMATRIVDLDR 228 (635)
T ss_pred CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 78999999999999999999999999999999999999999999999999884 5999999999999999999999999
Q ss_pred CEEEe-ecCHH
Q psy7367 207 GKLQC-CGSSV 216 (251)
Q Consensus 207 G~i~~-~g~~~ 216 (251)
|+++. .|+..
T Consensus 229 G~i~~~~g~~~ 239 (635)
T PRK11147 229 GKLVSYPGNYD 239 (635)
T ss_pred CEEEEecCCHH
Confidence 99974 57654
No 339
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.9e-45 Score=380.15 Aligned_cols=210 Identities=24% Similarity=0.386 Sum_probs=184.2
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
|+++||+++|+. .+++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|+++|.++.. ....+|++|+|
T Consensus 1218 I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~ 1296 (1490)
T TIGR01271 1218 MDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGV 1296 (1490)
T ss_pred EEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEE
Confidence 478999999963 3679999999999999999999999999999999999997 79999999999965 55678999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCC-----------CCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL-----------ANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~kqrv~ia~al 147 (251)
+||+|.+|+. |+++||..+. ... .+++.++++.+++.+...+. ...||||||||++|||||
T Consensus 1297 IpQdp~LF~G-TIR~NLdp~~---~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARAL 1368 (1490)
T TIGR01271 1297 IPQKVFIFSG-TFRKNLDPYE---QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSI 1368 (1490)
T ss_pred EeCCCccCcc-CHHHHhCccc---CCC----HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHH
Confidence 9999999987 9999996532 112 24577788888775433222 247999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+++|+|||||||||+||+.+.+.+.+.|++..+++|||++||.++.+.. ||||++|++|+|++.|+|.++..
T Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1369 LSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999999999999999998778999999999999986 99999999999999999987653
No 340
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.5e-44 Score=306.30 Aligned_cols=197 Identities=20% Similarity=0.288 Sum_probs=182.9
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEcc-CCCCCCCCCHHH
Q psy7367 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQ-YNALFDKLTVEE 93 (251)
Q Consensus 15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q-~~~l~~~ltv~e 93 (251)
++|+||||++++||.+||+|+||||||||||+|+|.++|++|+|.++|+- +++.. .-.+-|.+|.+|
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v------------~~li~lg~Gf~pelTGre 108 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV------------APLIELGAGFDPELTGRE 108 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE------------ehhhhcccCCCcccchHH
Confidence 69999999999999999999999999999999999999999999998853 32222 234567899999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7367 94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173 (251)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~ 173 (251)
|+.+.+.+.+..+++.++++++..+.-+|.++.++|+..+|.||+-|+++|.|...+|++||+||-.+--|+.-+++-.+
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~ 188 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLE 188 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh-hCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhc
Q psy7367 174 LLIKY-KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFA 223 (251)
Q Consensus 174 ~l~~l-~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 223 (251)
.+.++ +++.|||++|||++.+.++|||+++|++|++...|++++....|.
T Consensus 189 rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~ 239 (249)
T COG1134 189 RLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYE 239 (249)
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHH
Confidence 99998 578999999999999999999999999999999999988766543
No 341
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=8.4e-45 Score=354.19 Aligned_cols=191 Identities=19% Similarity=0.300 Sum_probs=164.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ +++++|+|
T Consensus 452 i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----------~~~i~~v~ 521 (659)
T TIGR00954 452 IKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----------KGKLFYVP 521 (659)
T ss_pred EEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----------CCcEEEEC
Confidence 47899999995446799999999999999999999999999999999999999999998753 45799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCCcccCCCC---------CcCChhHHHHHHHHHHHccC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGIPHKRTSLA---------NTLSGGMQRKLSVAMAFIGG 150 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~kqrv~ia~al~~~ 150 (251)
|++.+++. |++||+.++....... .....+++.++++.+++.+..+++. .+||||||||++|||||+.+
T Consensus 522 Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~ 600 (659)
T TIGR00954 522 QRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHK 600 (659)
T ss_pred CCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcC
Confidence 99998887 9999998754321110 1111345778999999987666543 79999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee
Q psy7367 151 SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA 205 (251)
Q Consensus 151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~ 205 (251)
|+++||||||++||+.+++.+.+.+++. |.|+|++||+++.+ +.||++++|+
T Consensus 601 p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~-~~~d~il~l~ 652 (659)
T TIGR00954 601 PQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLW-KYHEYLLYMD 652 (659)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHH-HhCCEEEEEe
Confidence 9999999999999999999999998774 89999999999987 5799999996
No 342
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.3e-45 Score=350.93 Aligned_cols=193 Identities=24% Similarity=0.337 Sum_probs=166.0
Q ss_pred eEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-----------EcceeCCCChHHh-
Q psy7367 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-----------IYNHDIRTDMTTI- 72 (251)
Q Consensus 5 ~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~-----------~~g~~~~~~~~~~- 72 (251)
+++++|+.+..+|++++ ++++|+++||+||||||||||||+|+|+++|++|+|. ++|+++.......
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 58999975456999999 9999999999999999999999999999999999997 8998874322111
Q ss_pred --hcceEEEccCCCCCCC---CCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 --RRSLGVCPQYNALFDK---LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 --~~~i~~v~q~~~l~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
+.++++.+|....++. .||.|++... +..++++++++.+++.+..++++.+|||||||||+||+||
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al 227 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAAL 227 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 2346666765444332 3999998641 2235688999999999889999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG 207 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G 207 (251)
+.+|++|||||||++||+..+..+.++|+++.+|.|||++|||++++..+||++++|+++
T Consensus 228 ~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 228 LRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999855999999999999999999999999863
No 343
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.1e-44 Score=373.79 Aligned_cols=208 Identities=19% Similarity=0.211 Sum_probs=180.8
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC----CCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCC
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML----PVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKL 89 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~----~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l 89 (251)
+++|+|+|+++++||+++|+||||||||||||+|+|+. +|++|+|.++|+++.......++.++|++|++.+++.+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 56999999999999999999999999999999999986 57999999999987432234566799999999999999
Q ss_pred CHHHHHHHHHHhcC-------CChHHHHHH-HHHHHHHcCCCcccCCC-----CCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 90 TVEEHMWFYSQLKQ-------VPKDLAQLE-ISNMIVDLGIPHKRTSL-----ANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 90 tv~e~l~~~~~~~~-------~~~~~~~~~-~~~~l~~~~l~~~~~~~-----~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
||+|++.|....+. ..+++..++ ++.+++.+||.+.++++ +..|||||||||+||++|+.+|++++|
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlll 233 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCW 233 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEE
Confidence 99999999776531 223333333 46789999999887765 467999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCH-HHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYM-DEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
||||+|||+.++..+++.|+++. + |+|||+++|++ +++.+++|++++|++|+++..|+++++...
T Consensus 234 DEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~y 301 (1394)
T TIGR00956 234 DNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQY 301 (1394)
T ss_pred eCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHH
Confidence 99999999999999999999985 3 89999999996 789999999999999999999998766544
No 344
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.3e-44 Score=294.55 Aligned_cols=218 Identities=23% Similarity=0.365 Sum_probs=192.1
Q ss_pred CEEEeEEEEeCCC--------cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHh
Q psy7367 1 MAIQNLSKRFPNG--------KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~--------~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 72 (251)
++++|++|.|... ..+++.|||++++|+.+++||.||||||||.|+|+|+++|++|+|.+||+.+....-..
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 5788999988421 25899999999999999999999999999999999999999999999999986433233
Q ss_pred -hcceEEEccCC--CCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCC-CcccCCCCCcCChhHHHHHHHHHHH
Q psy7367 73 -RRSLGVCPQYN--ALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGI-PHKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 73 -~~~i~~v~q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
.++|-++||+| .+-|.+.+-+.+..++++. ........+++.+-|..+|| .+..+-+|..||.||||||++||||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARAL 164 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARAL 164 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHH
Confidence 36899999998 4567777888888777754 34455666789999999998 4678889999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
+.+|+++|.||..++||...+.++.+++.+++ + |.+.|+++.++..+..++|.|+||++|++++.|++.++
T Consensus 165 IL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v 237 (267)
T COG4167 165 ILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV 237 (267)
T ss_pred hcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhh
Confidence 99999999999999999999999999999985 3 99999999999999999999999999999999998654
No 345
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.6e-44 Score=297.61 Aligned_cols=152 Identities=22% Similarity=0.300 Sum_probs=137.5
Q ss_pred EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCC
Q psy7367 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYN 83 (251)
Q Consensus 4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~ 83 (251)
.|++|+|++ +.++++ +|+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ++|++|++
T Consensus 4 ~~l~~~~~~-~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----------i~~~~q~~ 70 (177)
T cd03222 4 PDCVKRYGV-FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----------PVYKPQYI 70 (177)
T ss_pred CCeEEEECC-EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----------EEEEcccC
Confidence 589999964 788998 49999999999999999999999999999999999999999853 78998864
Q ss_pred CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCC
Q psy7367 84 ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV 163 (251)
Q Consensus 84 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gL 163 (251)
. ||+|||||++|||||+.+|+++||||||++|
T Consensus 71 ~------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 71 D------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred C------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 3 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee--cCHH
Q psy7367 164 DPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCC--GSSV 216 (251)
Q Consensus 164 D~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~--g~~~ 216 (251)
|+.+++.+.+.+.++. + +.|||++||+++++..+||++++|+++..+.. |.|.
T Consensus 103 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 103 DIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 9999999999999984 5 49999999999999999999999998765533 5443
No 346
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-43 Score=285.86 Aligned_cols=155 Identities=37% Similarity=0.649 Sum_probs=143.6
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEc
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCP 80 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~ 80 (251)
+++|++++|.+ +.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++.. ....+++.++|+|
T Consensus 1 ~~~~~~~~~~~-~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 1 EIENLSFRYGG-RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred CeEEEEEEeCC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 37899999964 689999999999999999999999999999999999999999999999998754 2345567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
| ||+||+||++||+|++.+|++++|||||
T Consensus 80 q---------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~ 108 (157)
T cd00267 80 Q---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPT 108 (157)
T ss_pred e---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367 161 SGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGK 208 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~ 208 (251)
++||+.++..+.+.+.++.+ +.|++++||+++++..+||++++|++|+
T Consensus 109 ~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 109 SGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999854 7999999999999999999999999874
No 347
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.6e-43 Score=367.04 Aligned_cols=211 Identities=20% Similarity=0.257 Sum_probs=181.2
Q ss_pred EEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEcceeCCCChHHhhcceEEEccCC
Q psy7367 7 SKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS---SGTAKIYNHDIRTDMTTIRRSLGVCPQYN 83 (251)
Q Consensus 7 ~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~ 83 (251)
++++ ++.+|+|+|+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++... ..++.++|++|++
T Consensus 173 ~k~~--~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~--~~~~~i~yv~Q~d 248 (1470)
T PLN03140 173 AKKT--KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEF--VPRKTSAYISQND 248 (1470)
T ss_pred CCCc--cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhh--cccceeEEecccc
Confidence 4444 367999999999999999999999999999999999999998 99999999987432 1257899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCC----------ChHHH------------------------HHHHHHHHHHcCCCccc---
Q psy7367 84 ALFDKLTVEEHMWFYSQLKQV----------PKDLA------------------------QLEISNMIVDLGIPHKR--- 126 (251)
Q Consensus 84 ~l~~~ltv~e~l~~~~~~~~~----------~~~~~------------------------~~~~~~~l~~~~l~~~~--- 126 (251)
.+++.+||+|++.|..+.++. .+.+. ...++.+++.+||++..
T Consensus 249 ~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~ 328 (1470)
T PLN03140 249 VHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTI 328 (1470)
T ss_pred cCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCce
Confidence 999999999999998765421 11110 01256789999998765
Q ss_pred --CCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCH-HHHHhhcCEE
Q psy7367 127 --TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYM-DEADLLGDRI 201 (251)
Q Consensus 127 --~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~-~~~~~~~d~i 201 (251)
++.+..|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++. .|+|||+++|++ +++..+||++
T Consensus 329 vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~v 408 (1470)
T PLN03140 329 VGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDI 408 (1470)
T ss_pred eCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheE
Confidence 45678999999999999999999999999999999999999999999999984 389999999996 6888999999
Q ss_pred EEeeCCEEEeecCHHHHHhh
Q psy7367 202 AIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 202 ~~l~~G~i~~~g~~~~~~~~ 221 (251)
++|++|++++.|+++++...
T Consensus 409 ilL~~G~ivy~G~~~~~~~y 428 (1470)
T PLN03140 409 ILLSEGQIVYQGPRDHILEF 428 (1470)
T ss_pred EEeeCceEEEeCCHHHHHHH
Confidence 99999999999998766543
No 348
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=9e-43 Score=288.17 Aligned_cols=157 Identities=24% Similarity=0.336 Sum_probs=137.0
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92 (251)
Q Consensus 13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 92 (251)
.+++|+|+||+|++|++++|+||||||||||||++. +++|++.++|..... .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccccc----ccccEEEEhH-----------
Confidence 467999999999999999999999999999999985 379999998763211 1345788877
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHH
Q psy7367 93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGG--SRTVILDEPTSGVDPYSRR 169 (251)
Q Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~--p~llllDEPt~gLD~~~~~ 169 (251)
.++++.+++.. ..++++.+||+|||||++|||||+.+ |+++||||||++||+.+++
T Consensus 68 ---------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~ 126 (176)
T cd03238 68 ---------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDIN 126 (176)
T ss_pred ---------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHH
Confidence 24688889976 47889999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367 170 SIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210 (251)
Q Consensus 170 ~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~ 210 (251)
.+.+.|++++ .|.|||++||+++++ ..||++++|.+|+..
T Consensus 127 ~l~~~l~~~~~~g~tvIivSH~~~~~-~~~d~i~~l~~g~~~ 167 (176)
T cd03238 127 QLLEVIKGLIDLGNTVILIEHNLDVL-SSADWIIDFGPGSGK 167 (176)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEECCCCCC
Confidence 9999999986 599999999999997 479999999776543
No 349
>KOG0061|consensus
Probab=100.00 E-value=1.2e-42 Score=335.57 Aligned_cols=219 Identities=28% Similarity=0.429 Sum_probs=194.8
Q ss_pred EEEeEEEEeCCC----cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CeeEEEEcceeCCCChHHhhc
Q psy7367 2 AIQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV---SSGTAKIYNHDIRTDMTTIRR 74 (251)
Q Consensus 2 ~i~~l~~~y~~~----~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~ 74 (251)
+.+|++....+. +++|++||.++++||+.||+||+||||||||++|+|-... .+|+|.+||+... .+..++
T Consensus 27 ~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~--~~~~~~ 104 (613)
T KOG0061|consen 27 SFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRD--SRSFRK 104 (613)
T ss_pred EEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCc--hhhhhh
Confidence 456777666432 6799999999999999999999999999999999999864 7999999996643 345678
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCCcccCCCCC-----cCChhHHHHHHHHHH
Q psy7367 75 SLGVCPQYNALFDKLTVEEHMWFYSQLKQ---VPKDLAQLEISNMIVDLGIPHKRTSLAN-----TLSGGMQRKLSVAMA 146 (251)
Q Consensus 75 ~i~~v~q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~kqrv~ia~a 146 (251)
.+|||.|+..+++.+||+|++.|.+.++- .+.++.+++++++++.+||....|..++ .+|||||+||+||.-
T Consensus 105 ~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~E 184 (613)
T KOG0061|consen 105 ISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALE 184 (613)
T ss_pred eeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHH
Confidence 89999999999999999999999987652 3557788899999999999999998887 599999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCH-HHHHhhcCEEEEeeCCEEEeecCHHHHHhhh
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYM-DEADLLGDRIAIIAAGKLQCCGSSVFLKNSF 222 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 222 (251)
|+.+|.+|+|||||+|||..+..++++.|++++ +|+|||++-|.+ ..+..+.|++++|.+|++++.|++......+
T Consensus 185 ll~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff 262 (613)
T KOG0061|consen 185 LLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFF 262 (613)
T ss_pred HHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHH
Confidence 999999999999999999999999999999995 599999999998 5777889999999999999999987665543
No 350
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-43 Score=287.85 Aligned_cols=191 Identities=23% Similarity=0.296 Sum_probs=172.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++.+|++...+ ...++.++||++.+||++.|.||||||||||||+|+|+.+|++|+|+++|..+......+++.+-|+-
T Consensus 3 L~a~~L~~~R~-e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 3 LEAENLSCERG-ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred chhhhhhhccC-cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 45788888885 47899999999999999999999999999999999999999999999999998766555677888998
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
-.+.+=+.+||+||+.|+..+.+... ...+.++++.+||....|.++.+||-|||+||+|||-+++.++++||||||
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~~~---~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ 158 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGSGN---AATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPF 158 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCCCc---hhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcc
Confidence 88999899999999999998876411 245889999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhh-hCCCeEEEEeCCHHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKY-KKGRTVILTTHYMDEAD 195 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l-~~g~tiii~tHd~~~~~ 195 (251)
++||...+..+-.++... .+|-.||.+||..-.+.
T Consensus 159 taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 159 TALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred cccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 999999999999999886 46889999999876553
No 351
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=8.1e-43 Score=329.88 Aligned_cols=201 Identities=25% Similarity=0.335 Sum_probs=174.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|+ ++.+|+++||+|.+|+.+||||+||||||||||+|+|.+.|++|+|...+. -+++|++
T Consensus 4 i~~~~ls~~~g-~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~----------~~v~~l~ 72 (530)
T COG0488 4 ITLENLSLAYG-DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG----------LRVGYLS 72 (530)
T ss_pred EEEeeeEEeeC-CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----------ceEEEeC
Confidence 57899999996 588999999999999999999999999999999999999999999987531 2599999
Q ss_pred cCCCCCCCCCHHHHHHHHHHh-cC-----------------------------CChHHHHHHHHHHHHHcCCCcccCCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQL-KQ-----------------------------VPKDLAQLEISNMIVDLGIPHKRTSLA 130 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~-~~-----------------------------~~~~~~~~~~~~~l~~~~l~~~~~~~~ 130 (251)
|++.+.+..||.+.+.....- .. ......+.++..++..+|+.+. ++++
T Consensus 73 Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~ 151 (530)
T COG0488 73 QEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPV 151 (530)
T ss_pred CCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCch
Confidence 999999988999988653210 00 0001123567888999999877 8999
Q ss_pred CcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367 131 NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210 (251)
Q Consensus 131 ~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~ 210 (251)
++||||||.||+||+||+.+|++|||||||++||..+...+-+.|.++. | |||+||||-.++..+|++|+.++.|++.
T Consensus 152 ~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I~~ld~g~l~ 229 (530)
T COG0488 152 SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHILELDRGKLT 229 (530)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhheEEecCCcee
Confidence 9999999999999999999999999999999999999999999999765 4 9999999999999999999999999886
Q ss_pred e-ecCH
Q psy7367 211 C-CGSS 215 (251)
Q Consensus 211 ~-~g~~ 215 (251)
. .|.-
T Consensus 230 ~y~Gny 235 (530)
T COG0488 230 PYKGNY 235 (530)
T ss_pred EecCCH
Confidence 4 4543
No 352
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.9e-42 Score=317.03 Aligned_cols=218 Identities=24% Similarity=0.448 Sum_probs=182.6
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
+.++++++.-++ .+++++++||++.+||.+|||||||||||||.|+|.|..+|.+|.|++||-++.. +.+.+-++|||
T Consensus 335 L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGY 414 (580)
T COG4618 335 LSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGY 414 (580)
T ss_pred eeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCc
Confidence 467888886543 3689999999999999999999999999999999999999999999999999976 45567799999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHH-----HHHHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLA-----QLEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p 151 (251)
+||+-.||+. ||.|||.=+.. ..+.+.. ...+.+++-.+ |.+.....--..||||||||+++||||..+|
T Consensus 415 LPQdVeLF~G-TIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P 491 (580)
T COG4618 415 LPQDVELFDG-TIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDP 491 (580)
T ss_pred CcccceecCC-cHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCC
Confidence 9999999998 99999954321 1122111 11244454444 3444444455699999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhh
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSF 222 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 222 (251)
.+++||||-|+||......+.+.|.+.+ +|.|+|++||.+..+. .+|+|++|++|++...|+.+++-.+.
T Consensus 492 ~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 492 FLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred cEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999999999999986 6999999999998886 59999999999999999988775554
No 353
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.5e-43 Score=278.00 Aligned_cols=200 Identities=21% Similarity=0.388 Sum_probs=175.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEcceeCCCChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS---SGTAKIYNHDIRTDMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~ 77 (251)
++++|++.+.++ ...|-++||+|.+|||+.|+||+|||||||+.-+.|.+.+. +|+++++++++.. .+..++++|
T Consensus 3 l~l~nvsl~l~g-~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~-lPa~qRq~G 80 (213)
T COG4136 3 LCLKNVSLRLPG-SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAAQRQIG 80 (213)
T ss_pred eeeeeeeecCCC-ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccc-cchhhhhee
Confidence 478999998864 78999999999999999999999999999999999999875 8999999999854 334578999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
++||++.+||+++|.+|+.|...- .++.+..++.+..++++.+|....++.|.+||||||-||++-|+|+.+|+.++||
T Consensus 81 iLFQD~lLFphlsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLD 159 (213)
T COG4136 81 ILFQDALLFPHLSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLD 159 (213)
T ss_pred eeecccccccccccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeC
Confidence 999999999999999999886432 1223345667899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHh-hh-CCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367 158 EPTSGVDPYSRRSIWELLIK-YK-KGRTVILTTHYMDEADLLGDRIAII 204 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~-l~-~g~tiii~tHd~~~~~~~~d~i~~l 204 (251)
||+|.||..-+.++.++.-. .+ .|..+|++|||.+.+. ...|++-|
T Consensus 160 EPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 160 EPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence 99999999999999998754 55 4999999999999987 45666554
No 354
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=7.3e-43 Score=342.01 Aligned_cols=212 Identities=18% Similarity=0.208 Sum_probs=166.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC---CCCeeEEEEcceeCCC-C--h-----
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML---PVSSGTAKIYNHDIRT-D--M----- 69 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~---~p~~G~i~~~g~~~~~-~--~----- 69 (251)
|+++|++++|++ +.+|+|+||+|++|+++||+||||||||||||+|+|.. .|++|+|.+.++.+.. . .
T Consensus 178 I~i~nls~~y~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~ 256 (718)
T PLN03073 178 IHMENFSISVGG-RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVL 256 (718)
T ss_pred EEEceEEEEeCC-CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHH
Confidence 578999999964 67999999999999999999999999999999999964 6889999876654311 0 0
Q ss_pred -------HHhhcceEEEccCCCCCCCCCHHHHH-----------------HH-HHHhcCCChHHHHHHHHHHHHHcCCC-
Q psy7367 70 -------TTIRRSLGVCPQYNALFDKLTVEEHM-----------------WF-YSQLKQVPKDLAQLEISNMIVDLGIP- 123 (251)
Q Consensus 70 -------~~~~~~i~~v~q~~~l~~~ltv~e~l-----------------~~-~~~~~~~~~~~~~~~~~~~l~~~~l~- 123 (251)
..+++.++|++|.+.+... ++.++. .- ...+..........++.+++..+|+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~ 335 (718)
T PLN03073 257 NTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTP 335 (718)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCCh
Confidence 0123457788886543221 111111 10 00111111123455788899999996
Q ss_pred cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEE
Q psy7367 124 HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAI 203 (251)
Q Consensus 124 ~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~ 203 (251)
+..++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||.+++..+||++++
T Consensus 336 ~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i~~ 413 (718)
T PLN03073 336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDILH 413 (718)
T ss_pred HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEE
Confidence 5678899999999999999999999999999999999999999999999999887 68999999999999999999999
Q ss_pred eeCCEEE-eecCHH
Q psy7367 204 IAAGKLQ-CCGSSV 216 (251)
Q Consensus 204 l~~G~i~-~~g~~~ 216 (251)
|++|++. +.|+..
T Consensus 414 l~~g~i~~~~g~~~ 427 (718)
T PLN03073 414 LHGQKLVTYKGDYD 427 (718)
T ss_pred EECCEEEEeCCCHH
Confidence 9999996 566653
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.8e-42 Score=358.53 Aligned_cols=202 Identities=24% Similarity=0.340 Sum_probs=168.7
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 79 (251)
++++|++++|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +|+|+
T Consensus 637 i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~yv 704 (1522)
T TIGR00957 637 ITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------SVAYV 704 (1522)
T ss_pred EEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC------------EEEEE
Confidence 478999999964 25799999999999999999999999999999999999999999999986 49999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHH--HHHHHHcC-----CCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI--SNMIVDLG-----IPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~--~~~l~~~~-----l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
+|++.+++ .|++||+.|+... ..++..+.+ ..+.+.++ .....+.+..+||||||||++||||++.+|+
T Consensus 705 ~Q~~~l~~-~Ti~eNI~~g~~~---~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~ 780 (1522)
T TIGR00957 705 PQQAWIQN-DSLRENILFGKAL---NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 780 (1522)
T ss_pred cCCccccC-CcHHHHhhcCCcc---CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999876 6999999986432 122211111 11222222 2234566788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh---hhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIK---YKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~---l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
++|||||||+||+...+.+++.+.+ +.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 781 illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 781 IYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHH
Confidence 9999999999999999999999865 3458999999999999876 9999999999999999987653
No 356
>KOG0056|consensus
Probab=100.00 E-value=7.7e-43 Score=318.19 Aligned_cols=217 Identities=24% Similarity=0.394 Sum_probs=183.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|+++.|..++++|+||||++.+|+.++|+||+|+||||++|+|..+...++|.|.+||+|+.. ....+|++||.|
T Consensus 538 i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVV 617 (790)
T KOG0056|consen 538 IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVV 617 (790)
T ss_pred EEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcc
Confidence 5789999999777999999999999999999999999999999999999999999999999999965 345689999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHH--HHH-HHcCCCccc----CCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS--NMI-VDLGIPHKR----TSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~--~~l-~~~~l~~~~----~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
||+..+|++ |+..|+.|+..- .+.++..+.++ .+= ..+++.+-. ..+.-.|||||||||+|||+++..|.
T Consensus 618 PQDtvLFNd-TI~yNIryak~~--AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 618 PQDTVLFND-TILYNIRYAKPS--ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred cCcceeecc-eeeeheeecCCC--CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence 999999986 999999885321 12222222111 111 113343333 33455899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+++|||.||+||..+.+.+-..|.++..++|-|++.|.+..+-. ||-|+++++|.|++.|..+++-..
T Consensus 695 iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn-AD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN-ADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred EEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec-ccEEEEEeCCeEeecCcHHHHHhc
Confidence 99999999999999999999999999999999999999999975 999999999999999999877554
No 357
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.9e-42 Score=358.01 Aligned_cols=199 Identities=25% Similarity=0.370 Sum_probs=167.4
Q ss_pred CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 78 (251)
++++|++++|+. ++++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|.+. .++..|+|
T Consensus 615 I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-----------~~~~~Iay 683 (1495)
T PLN03232 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-----------VIRGSVAY 683 (1495)
T ss_pred EEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----------EecCcEEE
Confidence 478999999963 25799999999999999999999999999999999999999998763 23568999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al 147 (251)
|+|+|.+|+. |++|||.|+.. ... ++.+++++..++.+ ........||||||||++||||+
T Consensus 684 v~Q~p~Lf~g-TIreNI~fg~~---~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 755 (1495)
T PLN03232 684 VPQVSWIFNA-TVRENILFGSD---FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755 (1495)
T ss_pred EcCccccccc-cHHHHhhcCCc---cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence 9999999985 99999998642 122 34555666655533 22334457999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHH-HHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWEL-LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~-l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
.++|+++|||||||+||+...+.+++. +....+++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 756 y~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 756 YSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999999999999999988765 555557899999999998875 59999999999999999987664
No 358
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.1e-41 Score=353.51 Aligned_cols=192 Identities=22% Similarity=0.305 Sum_probs=158.9
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE 93 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 93 (251)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++| +|+|++|++.+++. |++|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------------~iayv~Q~~~l~~~-Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------RISFSPQTSWIMPG-TIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------------EEEEEeCCCccCCc-cHHH
Confidence 3589999999999999999999999999999999999999999999987 39999999999985 9999
Q ss_pred HHHHHHHhcCCChHHHHH--HHHHHHHHcCC--CcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q psy7367 94 HMWFYSQLKQVPKDLAQL--EISNMIVDLGI--PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRR 169 (251)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~--~~~~~l~~~~l--~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~ 169 (251)
|+.|+..+......+..+ .+.+.++.+.. ......++..||||||||++||||++.+|+++||||||++||+..++
T Consensus 506 NI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~ 585 (1490)
T TIGR01271 506 NIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK 585 (1490)
T ss_pred HHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 999864321100011111 12223333322 22345668899999999999999999999999999999999999999
Q ss_pred HHHHH-HHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 170 SIWEL-LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 170 ~l~~~-l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
.+++. +..+.+++|+|++||+++.+.. ||++++|++|+++..|+++++.
T Consensus 586 ~i~~~~l~~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 586 EIFESCLCKLMSNKTRILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHhcCCeEEEEeCChHHHHh-CCEEEEEECCEEEEEcCHHHHH
Confidence 99985 5666679999999999999875 9999999999999999987664
No 359
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.4e-41 Score=354.38 Aligned_cols=198 Identities=24% Similarity=0.386 Sum_probs=168.2
Q ss_pred CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCe-eEEEEcceeCCCChHHhhcceE
Q psy7367 1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSS-GTAKIYNHDIRTDMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~i~ 77 (251)
++++|++++|+. .+++|+|+||+|++|+.++|+||+|||||||+++|+|.++|++ |+|.+ +.+|+
T Consensus 615 I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l------------~~~Ia 682 (1622)
T PLN03130 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------------RGTVA 682 (1622)
T ss_pred eEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE------------cCeEE
Confidence 578999999963 2579999999999999999999999999999999999999999 99974 45799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHH
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~a 146 (251)
||+|+|.+|+. |++|||.|+..+ . +++..++++..+|.+ ........||||||||++||||
T Consensus 683 yv~Q~p~Lfng-TIreNI~fg~~~---d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARA 754 (1622)
T PLN03130 683 YVPQVSWIFNA-TVRDNILFGSPF---D----PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARA 754 (1622)
T ss_pred EEcCccccCCC-CHHHHHhCCCcc---c----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHH
Confidence 99999999985 999999986432 1 234556666665533 2234455799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHH-HHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~-~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+..+|+++|||||||+||+...+.+++ .+....+++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 755 ly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 755 VYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred HhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999988865 5555557899999999998876 59999999999999999987664
No 360
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-41 Score=273.35 Aligned_cols=212 Identities=25% Similarity=0.403 Sum_probs=175.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee-----CCC----Ch-H
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD-----IRT----DM-T 70 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~-----~~~----~~-~ 70 (251)
+++.++||.|+. ....+||||++.|||+.||+|++||||||||+||++-+.|++|+|.|.-.+ +-. .. .
T Consensus 7 L~V~~lsk~Yg~-~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~ 85 (258)
T COG4107 7 LSVSGLSKLYGP-GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRR 85 (258)
T ss_pred eeehhhhhhhCC-CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHH
Confidence 578899999975 568999999999999999999999999999999999999999999996532 111 11 1
Q ss_pred HhhcceEEEccCCC--CCCCCCHHHHH-----HHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHH
Q psy7367 71 TIRRSLGVCPQYNA--LFDKLTVEEHM-----WFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLS 142 (251)
Q Consensus 71 ~~~~~i~~v~q~~~--l~~~ltv~e~l-----~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ 142 (251)
-.|..-|+|.|+|. +-...+.--|+ +.+.+-++ ..++.+.++|+++.++ ...+..|..+||||+||+.
T Consensus 86 L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG----~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQ 161 (258)
T COG4107 86 LLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG----NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQ 161 (258)
T ss_pred HhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh----hHHHHHHHHHHhcccCcccccCcccccchHHHHHHH
Confidence 23456899999984 32222222233 23333333 3455678899999997 5678899999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367 143 VAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 217 (251)
Q Consensus 143 ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 217 (251)
|||-|+..|+++++||||.|||...+..++++++.+- + +.+++++|||+..+.-++||.++|++|++++.|-.+.
T Consensus 162 iARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDr 238 (258)
T COG4107 162 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDR 238 (258)
T ss_pred HHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccc
Confidence 9999999999999999999999999999999999984 5 9999999999999999999999999999999986543
No 361
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=5.1e-40 Score=282.06 Aligned_cols=193 Identities=21% Similarity=0.316 Sum_probs=140.3
Q ss_pred CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHH-HHHhCCCCCCeeEEEEcc-------ee---CCC-ChHHhh-cceEE
Q psy7367 12 NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTI-SMLMGMLPVSSGTAKIYN-------HD---IRT-DMTTIR-RSLGV 78 (251)
Q Consensus 12 ~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLl-k~l~Gl~~p~~G~i~~~g-------~~---~~~-~~~~~~-~~i~~ 78 (251)
.+..+|+++||+|++||+++|+||||||||||+ .++. .+|++.+.. .. +.. .....+ ...++
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAI 80 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceE
Confidence 346799999999999999999999999999995 4443 134332210 00 000 000111 23445
Q ss_pred EccCCC--CCCCCCHHH---HHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCC-
Q psy7367 79 CPQYNA--LFDKLTVEE---HMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGS- 151 (251)
Q Consensus 79 v~q~~~--l~~~ltv~e---~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p- 151 (251)
.+|++. +.+..++.. ...+...+.. ......+ .++++.+++.+ ..++++.+||||||||++|||||+.+|
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 157 (226)
T cd03270 81 AIDQKTTSRNPRSTVGTVTEIYDYLRLLFA--RVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLT 157 (226)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHHhh--hhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCC
Confidence 555542 234445442 2222221211 1112223 57899999986 579999999999999999999999998
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeec
Q psy7367 152 -RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCG 213 (251)
Q Consensus 152 -~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g 213 (251)
++|||||||+|||+..+..++++|++++ +|.|||++|||++++. +||++++| ++|+|+++|
T Consensus 158 ~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 158 GVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEeCCCccccCCEEEecC
Confidence 5999999999999999999999999985 5899999999999974 89999999 999999875
No 362
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-40 Score=268.78 Aligned_cols=206 Identities=21% Similarity=0.382 Sum_probs=182.3
Q ss_pred CEEEeEEEEeC----CC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee--C---CCCh
Q psy7367 1 MAIQNLSKRFP----NG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD--I---RTDM 69 (251)
Q Consensus 1 l~i~~l~~~y~----~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~--~---~~~~ 69 (251)
+.++|++|+|- ++ -++++++||+++.|||+++-||||||||||||+|-|-+.|++|+|++.... + ....
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 46889999982 12 369999999999999999999999999999999999999999999996543 2 1122
Q ss_pred H---Hh-hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHH
Q psy7367 70 T---TI-RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVA 144 (251)
Q Consensus 70 ~---~~-~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia 144 (251)
. +. ++.||||.|.....|..+..|-++-+..-++.+.+..+.++..++.++++.+ +..-.|..+||||||||.||
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIa 164 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIA 164 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhh
Confidence 1 23 4689999999888898888999988888888999889999999999999975 55778999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367 145 MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAA 206 (251)
Q Consensus 145 ~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~ 206 (251)
|.++.+-++|+|||||++||..++..+.++|.+.+ +|.++|=+-||-+.=+..|||++.|..
T Consensus 165 Rgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 165 RGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999986 699999999999999999999988754
No 363
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.2e-40 Score=342.71 Aligned_cols=189 Identities=23% Similarity=0.370 Sum_probs=160.3
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92 (251)
Q Consensus 13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 92 (251)
++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+. ++|+|+||++.+++ .|++
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------------~~i~yv~Q~~~l~~-~Tv~ 738 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RSIAYVPQQAWIMN-ATVR 738 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------------CeEEEEeCCCccCC-CcHH
Confidence 3679999999999999999999999999999999999999999999862 46999999999875 6999
Q ss_pred HHHHHHHHhcCCChHHHH-----HHHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q psy7367 93 EHMWFYSQLKQVPKDLAQ-----LEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165 (251)
Q Consensus 93 e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~ 165 (251)
||+.|+.... .+... ..+++.++.+ |+....++++.+||||||||++|||||+.+|+++||||||++||+
T Consensus 739 enI~~~~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 739 GNILFFDEED---AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHHcCChhh---HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 9999853211 11111 1234456666 677777888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 166 YSRRSIWELL-IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 166 ~~~~~l~~~l-~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
...+.+++.+ ....+|+|+|++||+++.+. .||++++|++|++++.|+.+++
T Consensus 816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l 868 (1560)
T PTZ00243 816 HVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADF 868 (1560)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHH
Confidence 9999888754 33345899999999999985 6999999999999999998765
No 364
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-41 Score=300.84 Aligned_cols=222 Identities=25% Similarity=0.409 Sum_probs=185.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v 79 (251)
+.+.++++.|...+++|+++||++++|+.++++||+|+||||++++|..++.+++|.|.++|+++... ...+|+.||.|
T Consensus 263 v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~V 342 (497)
T COG5265 263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIV 342 (497)
T ss_pred EEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcC
Confidence 35789999997778999999999999999999999999999999999999999999999999999653 35678999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHH-----HHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL-----EISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR 152 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ 152 (251)
||+..||++ |.+.|+.++..-. ..++... ++...++.+ |++.....+.-.|||||||||+|||+++.+|+
T Consensus 343 PQDtvLFND-ti~yni~ygr~~a--t~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~ 419 (497)
T COG5265 343 PQDTVLFND-TIAYNIKYGRPDA--TAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPP 419 (497)
T ss_pred cccceehhh-hHHHHHhccCccc--cHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCC
Confidence 999999986 9999998864321 1221111 122223332 22333334455899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcCcceE
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYL 228 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 228 (251)
+++|||.||+||....+.+...|++...|.|-+++.|.+..+.. ||.|++|++|+|++.|+.+++-.. .+.|.
T Consensus 420 il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~erg~h~~ll~~--~g~ya 492 (497)
T COG5265 420 ILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVERGTHEELLAA--GGLYA 492 (497)
T ss_pred EEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEEecCcHHHHHHc--CChHH
Confidence 99999999999999999999999999999999999999999986 999999999999999998877554 44443
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.5e-38 Score=300.77 Aligned_cols=198 Identities=26% Similarity=0.334 Sum_probs=171.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|+++.|++++.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+.- .-++||+.
T Consensus 322 l~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~----------~v~igyf~ 391 (530)
T COG0488 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE----------TVKIGYFD 391 (530)
T ss_pred EEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC----------ceEEEEEE
Confidence 47899999996557899999999999999999999999999999999999999999998742 13599999
Q ss_pred cCC-CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 81 QYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 81 q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
|+. .+.+..|+.|++.-...- .....++.+|..|++. +...+++..||||||-|+.+|+.++.+|.+|||||
T Consensus 392 Q~~~~l~~~~t~~d~l~~~~~~------~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE 465 (530)
T COG0488 392 QHRDELDPDKTVLEELSEGFPD------GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDE 465 (530)
T ss_pred ehhhhcCccCcHHHHHHhhCcc------ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcC
Confidence 987 445777999998653211 1145688999999997 56688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee-cCHHH
Q psy7367 159 PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC-GSSVF 217 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~-g~~~~ 217 (251)
||+.||..+++.+.+.|.++. -|||+||||..++.++|++++.+.+ ++... |+..+
T Consensus 466 PTNhLDi~s~~aLe~aL~~f~--Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~ 522 (530)
T COG0488 466 PTNHLDIESLEALEEALLDFE--GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYED 522 (530)
T ss_pred CCccCCHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHH
Confidence 999999999999999999885 6899999999999999999999998 55543 66543
No 366
>KOG0054|consensus
Probab=100.00 E-value=4e-39 Score=326.35 Aligned_cols=212 Identities=24% Similarity=0.342 Sum_probs=185.1
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
|+++|++.+|..+ ..||++|||+|++||.+||+|+.|||||||+++|.++..|.+|+|.+||.|+.. ...++|++++.
T Consensus 1139 I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsI 1218 (1381)
T KOG0054|consen 1139 IEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSI 1218 (1381)
T ss_pred EEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCee
Confidence 5799999999543 579999999999999999999999999999999999999999999999999975 66789999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-----------cccCCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-----------HKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
+||+|.+|.+ |++.||.-+.++. + +++-++|+..+|. .....-..++|-||||.++|||||
T Consensus 1219 IPQdPvLFsG-TvR~NLDPf~e~s---D----~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL 1290 (1381)
T KOG0054|consen 1219 IPQDPVLFSG-TVRFNLDPFDEYS---D----DEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARAL 1290 (1381)
T ss_pred eCCCCceecC-ccccccCcccccC---H----HHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHH
Confidence 9999999998 9999996543321 2 2344455555443 233333468999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+++++||+|||.|+++|+++-..|-+.|++.=+++|||.+.|.++.+.. ||||+||++|++++.++|..+-..
T Consensus 1291 Lr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1291 LRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred hccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHHHhC
Confidence 9999999999999999999999999999987778999999999999997 999999999999999999887654
No 367
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=1.1e-38 Score=252.09 Aligned_cols=132 Identities=33% Similarity=0.579 Sum_probs=119.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEccCCCCCCCCCHHHHH
Q psy7367 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHM 95 (251)
Q Consensus 17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~e~l 95 (251)
|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++.++|++|++.+++.+|+.||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 789999999999999999999999999999999999999999999999976 345667899999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCC----CcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy7367 96 WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA----NTLSGGMQRKLSVAMAFIGGSRTVILDEPTS 161 (251)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~LSgG~kqrv~ia~al~~~p~llllDEPt~ 161 (251)
....+++++++.+++.+..++.+ .+||+|||||++||+||+.+|+++||||||+
T Consensus 80 ------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 22346788899998877665555 9999999999999999999999999999997
No 368
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.1e-37 Score=272.41 Aligned_cols=194 Identities=24% Similarity=0.321 Sum_probs=156.4
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh--------CC--CCCCe-----------eEEEEcceeCCCCh----
Q psy7367 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM--------GM--LPVSS-----------GTAKIYNHDIRTDM---- 69 (251)
Q Consensus 15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~--------Gl--~~p~~-----------G~i~~~g~~~~~~~---- 69 (251)
..|+|+|++|+.|.+++|+|+||||||||++.+. +. ..|.. --|.++..++....
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998662 11 01211 14667776664311
Q ss_pred H-------Hhh----------------cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-c
Q psy7367 70 T-------TIR----------------RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-K 125 (251)
Q Consensus 70 ~-------~~~----------------~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~ 125 (251)
. .+| ..+.|..++...+.+|||.|++.|+..+.+ ..++.++++.+||.. .
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~~~L~~vgL~~l~ 162 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKLQTLCDVGLGYIK 162 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHHHHHHHcCCchhh
Confidence 1 111 124455566666678999999999765532 235678999999987 5
Q ss_pred cCCCCCcCChhHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEE
Q psy7367 126 RTSLANTLSGGMQRKLSVAMAFIGG---SRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRI 201 (251)
Q Consensus 126 ~~~~~~~LSgG~kqrv~ia~al~~~---p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i 201 (251)
.++++.+|||||+||++||++|+.+ |+++||||||+|||+..+..++++|+++. +|.|||++||+++++. .||++
T Consensus 163 l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~i 241 (261)
T cd03271 163 LGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWI 241 (261)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEE
Confidence 7999999999999999999999996 79999999999999999999999999986 5899999999999986 69999
Q ss_pred EEe------eCCEEEeecCH
Q psy7367 202 AII------AAGKLQCCGSS 215 (251)
Q Consensus 202 ~~l------~~G~i~~~g~~ 215 (251)
++| ++|++++.|++
T Consensus 242 i~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 242 IDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEecCCcCCCCCEEEEeCCC
Confidence 999 89999999874
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=6.6e-38 Score=263.74 Aligned_cols=166 Identities=21% Similarity=0.266 Sum_probs=137.2
Q ss_pred ee-eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCe---------eEEEEcceeCCCChHHhhcceEEEccCCCC
Q psy7367 16 AV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSS---------GTAKIYNHDIRTDMTTIRRSLGVCPQYNAL 85 (251)
Q Consensus 16 il-~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~---------G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l 85 (251)
-+ +++++++++| +++|+||||||||||+++|+|+.+|.. |++.+.|+++... ..++.|+|+||++..
T Consensus 11 ~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~vfq~~~~ 87 (197)
T cd03278 11 SFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP--ANFAEVTLTFDNSDG 87 (197)
T ss_pred CcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC--CceEEEEEEEEcCCC
Confidence 35 7889999999 999999999999999999999987653 4677777765331 234689999999976
Q ss_pred CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc----cCCCEEEEeCCCC
Q psy7367 86 FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI----GGSRTVILDEPTS 161 (251)
Q Consensus 86 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~----~~p~llllDEPt~ 161 (251)
+ |. ... .+++.++++. .+..++++.+||+|||||++||++++ .+|+++||||||+
T Consensus 88 ~----------~~-----~~~---~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~ 146 (197)
T cd03278 88 R----------YS-----IIS---QGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDA 146 (197)
T ss_pred c----------ee-----EEe---hhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcc
Confidence 6 11 001 2356667776 55678899999999999999999997 4679999999999
Q ss_pred CCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367 162 GVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA 206 (251)
Q Consensus 162 gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~ 206 (251)
+||+..+..+.+.|++++++.|||++||+++.+ ++||+++.|..
T Consensus 147 ~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 147 ALDDANVERFARLLKEFSKETQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred cCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH-hhcceEEEEEe
Confidence 999999999999999987689999999999987 57999999874
No 370
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-36 Score=278.89 Aligned_cols=199 Identities=24% Similarity=0.359 Sum_probs=177.6
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC--ChHHhhcceEEEccCC---CCCCCCC
Q psy7367 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT--DMTTIRRSLGVCPQYN---ALFDKLT 90 (251)
Q Consensus 16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~~i~~v~q~~---~l~~~lt 90 (251)
.++|+||++.+|||+||.|-=|||+|-|+++|.|..++++|+|.++|+++.. +...++..|+|||.+. .++..++
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 4899999999999999999999999999999999999999999999998854 3456788999999874 6889999
Q ss_pred HHHHHHHHHH--hc---CCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy7367 91 VEEHMWFYSQ--LK---QVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164 (251)
Q Consensus 91 v~e~l~~~~~--~~---~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD 164 (251)
+.+|+.+... +. -......++.++++.+.+++. +..++++.+||||.||||.|||.|+.+|++|||||||.|+|
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID 433 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence 9999988722 11 134445556789999999996 56678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367 165 PYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214 (251)
Q Consensus 165 ~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~ 214 (251)
.-++.+++++|+++. +|++||++|-+++|+..+||||+||++|+++.+-+
T Consensus 434 VGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 434 VGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence 999999999999995 69999999999999999999999999999987544
No 371
>KOG0054|consensus
Probab=100.00 E-value=3.1e-36 Score=305.43 Aligned_cols=199 Identities=26% Similarity=0.393 Sum_probs=171.3
Q ss_pred CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 78 (251)
++++|.+++.+. ..+.|+||||+|++|+.+||+||-|||||+||.+|.|-.+..+|+|.++|. ++|
T Consensus 519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs------------iaY 586 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS------------VAY 586 (1381)
T ss_pred EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe------------EEE
Confidence 467889998853 234899999999999999999999999999999999999999999999873 899
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCccc-----------CCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR-----------TSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~kqrv~ia~al 147 (251)
+||.|.+++. ||+|||.|+..+. +++.+++++.+.|+... ..+.-+||||||||++||||+
T Consensus 587 v~Q~pWI~ng-TvreNILFG~~~d-------~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAV 658 (1381)
T KOG0054|consen 587 VPQQPWIQNG-TVRENILFGSPYD-------EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAV 658 (1381)
T ss_pred eccccHhhCC-cHHHhhhcCcccc-------HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHH
Confidence 9999999986 9999999975432 34566667777665432 345569999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-hhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIK-YKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~-l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
-++++++|||.|+|++|....+.+++-.-. +-+++|+|++||.++.+. .||.|++|++|+|.+.|+.+++.+
T Consensus 659 Y~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~-~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 659 YQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLP-HADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred hccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhh-hCCEEEEecCCeEecccCHHHHHh
Confidence 999999999999999999999999986654 346899999999888886 599999999999999999987753
No 372
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=1e-36 Score=263.49 Aligned_cols=194 Identities=18% Similarity=0.252 Sum_probs=144.0
Q ss_pred EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh----------------CCCCCCee--------EE
Q psy7367 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM----------------GMLPVSSG--------TA 58 (251)
Q Consensus 3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~----------------Gl~~p~~G--------~i 58 (251)
++|. |+|+ +..++.+++ |++++|+||||||||||+++|+ +++.+.+| +|
T Consensus 6 ~~nf-ksy~-~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i 78 (243)
T cd03272 6 IQGF-KSYK-DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEI 78 (243)
T ss_pred EeCc-cCcc-cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEE
Confidence 4443 2575 366888876 7899999999999999999998 55566666 66
Q ss_pred EEcceeC----CCChHHhhcceEEEccCCCCCC-CCCHHHHHHHHHHhcCCChHHHH--HHHHHHHHHcCCCcccCCCCC
Q psy7367 59 KIYNHDI----RTDMTTIRRSLGVCPQYNALFD-KLTVEEHMWFYSQLKQVPKDLAQ--LEISNMIVDLGIPHKRTSLAN 131 (251)
Q Consensus 59 ~~~g~~~----~~~~~~~~~~i~~v~q~~~l~~-~ltv~e~l~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~ 131 (251)
.+++.+- ......+++.+++++|+..+++ ..|..|...+...+ +....... .....+.+.+++.+..++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~ 157 (243)
T cd03272 79 IFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSRSNPYYIVPQGKINSLTNMKQDEQQEMQ 157 (243)
T ss_pred EEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCCCCCcEEEEcCchHHhhhcccccccccc
Confidence 6665332 1112235677999999988877 46776665554433 33321100 001123444566666788999
Q ss_pred cCChhHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee
Q psy7367 132 TLSGGMQRKLSVAMAFIG----GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA 205 (251)
Q Consensus 132 ~LSgG~kqrv~ia~al~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~ 205 (251)
+||||||||++||+||+. +|+++||||||++||+.+++.+++.|+++.++++||++||+.+ +.++||++++|.
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d~i~~l~ 234 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVADKFYGVK 234 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCCEEEEEE
Confidence 999999999999999973 6899999999999999999999999999866888999999865 668999999986
No 373
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.5e-37 Score=249.40 Aligned_cols=206 Identities=19% Similarity=0.297 Sum_probs=177.2
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEc
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCP 80 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~ 80 (251)
+++|++..- -|-.+|.++..||++-+||||||||||||-.++|++ |-+|+|.+.|+++.. ...++.++-+|+.
T Consensus 5 qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLs 78 (248)
T COG4138 5 QLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLS 78 (248)
T ss_pred eeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHh
Confidence 455555432 367889999999999999999999999999999987 569999999999864 3446667778999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc-------CCCE
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG-------GSRT 153 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~-------~p~l 153 (251)
|+..-...|.|+.++.++. +.+.....+.++...+++++++.+.+.+|||||.|||-+|...++ ..++
T Consensus 79 Qqq~p~f~mpV~~YL~L~q-----P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~L 153 (248)
T COG4138 79 QQQTPPFAMPVWHYLTLHQ-----PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQL 153 (248)
T ss_pred hccCCcchhhhhhhhhhcC-----chHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCcccee
Confidence 8766555789999987743 345556678899999999999999999999999999999988765 4579
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 154 VILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 154 lllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
||+|||.++||...+..+..+|.++. +|.+|||++||++.-.+.||+++.++.|++...|..+++
T Consensus 154 LllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eV 219 (248)
T COG4138 154 LLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEV 219 (248)
T ss_pred EEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhh
Confidence 99999999999999999999999986 599999999999999999999999999999999987643
No 374
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=2.1e-37 Score=263.51 Aligned_cols=184 Identities=17% Similarity=0.224 Sum_probs=145.9
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEcc
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQ 81 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q 81 (251)
+++|+. +|+ ++.+++++++ ++++|+||||||||||+++|. +++|.+... ..++++++++|
T Consensus 7 ~l~nfk-~~~-~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~~---~~~~~i~~~~~ 66 (212)
T cd03274 7 VLENFK-SYA-GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRASK---MRQKKLSDLIH 66 (212)
T ss_pred EEECcc-cCC-CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHHH---hhhhhHHHHhc
Confidence 556665 785 4779999988 899999999999999999997 334544311 11257999999
Q ss_pred CCCCCCCCCHHHHHHHHHHh--------cCCChHHHHH--HHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc--
Q psy7367 82 YNALFDKLTVEEHMWFYSQL--------KQVPKDLAQL--EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG-- 149 (251)
Q Consensus 82 ~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~--~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~-- 149 (251)
+..+++.+|+.+++.++... ++........ ...++++.+++.+..++++..||+|||||++||+|++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~ 146 (212)
T cd03274 67 NSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHH 146 (212)
T ss_pred CCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcc
Confidence 99999999999987766543 2222111000 12566778888888888999999999999999999974
Q ss_pred --CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367 150 --GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA 206 (251)
Q Consensus 150 --~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~ 206 (251)
+|++++|||||+|||+.++..+++.+++++++.++|++||+. ++.++|||+++|..
T Consensus 147 ~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 147 YKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN-NMFELADRLVGIYK 204 (212)
T ss_pred cCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH-HHHHhCCEEEEEEe
Confidence 589999999999999999999999999997788999999995 66789999999974
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=3.6e-36 Score=261.84 Aligned_cols=181 Identities=16% Similarity=0.196 Sum_probs=142.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEcce-eCCCC--h-HHhhcceEEEccCC---------CCCCC
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-SGTAKIYNH-DIRTD--M-TTIRRSLGVCPQYN---------ALFDK 88 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-~G~i~~~g~-~~~~~--~-~~~~~~i~~v~q~~---------~l~~~ 88 (251)
.+.+ .+++|+||||||||||+++|++++.|+ .|++++.+. ++... . ...+..|+++||++ .+.+.
T Consensus 22 ~~~~-~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ 100 (251)
T cd03273 22 GFDP-QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPE 100 (251)
T ss_pred cCCC-CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCce
Confidence 3444 599999999999999999999999886 468888776 43111 1 12245899999985 34567
Q ss_pred CCHHHHHHHHHHhcC-C-ChHHHHHHHHHHHHHcCCC--------------------cccCCCCCcCChhHHHHHHHHHH
Q psy7367 89 LTVEEHMWFYSQLKQ-V-PKDLAQLEISNMIVDLGIP--------------------HKRTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 89 ltv~e~l~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~--------------------~~~~~~~~~LSgG~kqrv~ia~a 146 (251)
+||.+++.+...... . .+....+++.++++.+++. +..++++.+||+|||||++||+|
T Consensus 101 ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~a 180 (251)
T cd03273 101 ITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLI 180 (251)
T ss_pred EEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHH
Confidence 888888865432111 1 1223346788999999986 44567899999999999999999
Q ss_pred Hc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEee
Q psy7367 147 FI----GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA 205 (251)
Q Consensus 147 l~----~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~ 205 (251)
|+ .+|+++||||||++||+..++.+++.|+++.+|.+||++||+. ++...||+++-+.
T Consensus 181 l~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~-~~~~~~d~v~~~~ 242 (251)
T cd03273 181 LALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKE-GMFNNANVLFRTR 242 (251)
T ss_pred HHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHhCCEEEEEE
Confidence 98 5789999999999999999999999999987789999999995 4455799998775
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=100.00 E-value=6e-35 Score=248.37 Aligned_cols=192 Identities=16% Similarity=0.158 Sum_probs=140.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEe-CCcEEEEEcCCCCcHHHHHHHHhCC-CCCCeeEEEEcc-eeCCCChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFY-EDQITSFLGHNGAGKTTTISMLMGM-LPVSSGTAKIYN-HDIRTDMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~-~Ge~~~liG~NGaGKSTLlk~l~Gl-~~p~~G~i~~~g-~~~~~~~~~~~~~i~ 77 (251)
|+++|+. +|.+ . .+++|+.. +|++++|+||||||||||+++|++. +-+..+....+. .+.. .....+..|+
T Consensus 6 i~l~nf~-~y~~-~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~-~~~~~~~~v~ 79 (213)
T cd03279 6 LELKNFG-PFRE-E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVF-APGEDTAEVS 79 (213)
T ss_pred EEEECCc-CcCC-c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHh-cCCCccEEEE
Confidence 4567777 6633 2 56677654 5899999999999999999999964 334444444321 0110 1112346799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc--------
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG-------- 149 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~-------- 149 (251)
++||.+.... ++..+ .+.......+.+ .+...++.+..++++.+||+||+||++||+||+.
T Consensus 80 ~~f~~~~~~~--~~~r~-------~gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~ 148 (213)
T cd03279 80 FTFQLGGKKY--RVERS-------RGLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRG 148 (213)
T ss_pred EEEEECCeEE--EEEEe-------cCCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhcc
Confidence 9999873211 12111 133333222211 2455556777889999999999999999999985
Q ss_pred --CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367 150 --GSRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKL 209 (251)
Q Consensus 150 --~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i 209 (251)
+|+++||||||++||+..+..+.+.+.++++ +.|||++||+++++..+||+++++++|..
T Consensus 149 ~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 149 GARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6789999999999999999999999999864 89999999999999999999999999854
No 377
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=8.8e-33 Score=253.30 Aligned_cols=217 Identities=23% Similarity=0.325 Sum_probs=190.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeC-CC-ChH-HhhcceE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-RT-DMT-TIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~-~~-~~~-~~~~~i~ 77 (251)
|++++|+..-..+...+++|||++.+|||+||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|+++ .. ... ..+..++
T Consensus 258 L~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~ 337 (501)
T COG3845 258 LEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLA 337 (501)
T ss_pred EEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCc
Confidence 57899998764445789999999999999999999999999999999999999999999999997 32 333 3457899
Q ss_pred EEccCC---CCCCCCCHHHHHHHHHHhc------C-CChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHH
Q psy7367 78 VCPQYN---ALFDKLTVEEHMWFYSQLK------Q-VPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 78 ~v~q~~---~l~~~ltv~e~l~~~~~~~------~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~a 146 (251)
|||.+. .+.+.+|+.||+.+..... + ..+....+.+.++++.|++. .-...++.+||||.+||+-+||-
T Consensus 338 ~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaRE 417 (501)
T COG3845 338 YVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARE 417 (501)
T ss_pred cCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhh
Confidence 999985 6788999999998855321 1 45667778899999999997 45567899999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 217 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 217 (251)
|..+|++||+.+||.|||..+.+.+.+.|.+.+ +|++|+++|-|++++..+||||.+|.+|+++...+++.
T Consensus 418 l~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 418 LARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred hccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 999999999999999999999999999999986 59999999999999999999999999999998776653
No 378
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=2.4e-32 Score=283.24 Aligned_cols=204 Identities=17% Similarity=0.236 Sum_probs=155.7
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHH---------HHhCCCCCCee----E----EEEcceeCCCC-h-------
Q psy7367 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTIS---------MLMGMLPVSSG----T----AKIYNHDIRTD-M------- 69 (251)
Q Consensus 15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk---------~l~Gl~~p~~G----~----i~~~g~~~~~~-~------- 69 (251)
..|+++||+|++||+++|+|+||||||||++ .|.|...+..+ . |.++..++... .
T Consensus 609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~ 688 (1809)
T PRK00635 609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYI 688 (1809)
T ss_pred CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeeh
Confidence 3799999999999999999999999999999 66675433111 1 23333322110 0
Q ss_pred ---HHhh---------c-----ceEEEccC---------------------C-----------------CCCCCCCHHHH
Q psy7367 70 ---TTIR---------R-----SLGVCPQY---------------------N-----------------ALFDKLTVEEH 94 (251)
Q Consensus 70 ---~~~~---------~-----~i~~v~q~---------------------~-----------------~l~~~ltv~e~ 94 (251)
..+| + ...|.|+. . ..|..+||.|+
T Consensus 689 g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~ev 768 (1809)
T PRK00635 689 KAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADI 768 (1809)
T ss_pred hhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHH
Confidence 0111 0 11122331 0 14667899999
Q ss_pred HHHHHHhc---CCChHHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHH
Q psy7367 95 MWFYSQLK---QVPKDLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFI---GGSRTVILDEPTSGVDPYS 167 (251)
Q Consensus 95 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~---~~p~llllDEPt~gLD~~~ 167 (251)
+.+...-. ....++..+++ ++++.+||.+. +++++.+|||||+||++||+||+ .+|+++||||||+|||+.+
T Consensus 769 L~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~ 847 (1809)
T PRK00635 769 LEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHD 847 (1809)
T ss_pred HHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHH
Confidence 98865421 22234455566 58899999886 79999999999999999999997 6999999999999999999
Q ss_pred HHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEee------CCEEEeecCHHHHHh
Q psy7367 168 RRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIA------AGKLQCCGSSVFLKN 220 (251)
Q Consensus 168 ~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~------~G~i~~~g~~~~~~~ 220 (251)
++.++++|.++. +|.|||++||+++++ .+||++++|. +|++++.|+++++..
T Consensus 848 ~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 848 IKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999999986 599999999999999 7999999996 789999999987643
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=100.00 E-value=2.2e-33 Score=237.43 Aligned_cols=165 Identities=27% Similarity=0.359 Sum_probs=131.3
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHh----CCCCCCeeEEEEcceeCCCChHHhhcceEEEccCC-----CCCCCC
Q psy7367 19 GLNVNFYEDQITSFLGHNGAGKTTTISMLM----GMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYN-----ALFDKL 89 (251)
Q Consensus 19 ~isl~i~~Ge~~~liG~NGaGKSTLlk~l~----Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~-----~l~~~l 89 (251)
..++++.+| +++|+||||||||||+++|. |..+|++|.+..+.+.+.. ...+..|+++||++ .....+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~--~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE--GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC--CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 345677788 99999999999999999995 9999988877622222222 12356799999987 344556
Q ss_pred CHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHH------HHHHHHHccCCCEEEEeCCCCCC
Q psy7367 90 TVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRK------LSVAMAFIGGSRTVILDEPTSGV 163 (251)
Q Consensus 90 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqr------v~ia~al~~~p~llllDEPt~gL 163 (251)
|++||+.+. +.. ++++.+ ++++.+||+||+|| ++||+|++.+|+++|+||||++|
T Consensus 92 ~~~~~~~~~------~~~----~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~L 152 (204)
T cd03240 92 AILENVIFC------HQG----ESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNL 152 (204)
T ss_pred hHhhceeee------chH----HHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcccc
Confidence 888888652 111 222222 77899999999996 78999999999999999999999
Q ss_pred CHHHHH-HHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367 164 DPYSRR-SIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAA 206 (251)
Q Consensus 164 D~~~~~-~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~ 206 (251)
|+..+. .+.+++.+++ + +.+||++||+++.+. .||+++.|.+
T Consensus 153 D~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~~l~~ 197 (204)
T cd03240 153 DEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-AADHIYRVEK 197 (204)
T ss_pred CHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-hCCEEEEEee
Confidence 999999 9999999985 4 899999999999875 6999999964
No 380
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-34 Score=254.48 Aligned_cols=200 Identities=22% Similarity=0.373 Sum_probs=167.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|+.+.|.....-+..||++|++||++.|+|.||||||||+++++|+++|++|+|++||+++.. ..+++|+-++-|
T Consensus 323 lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSav 402 (546)
T COG4615 323 LELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAV 402 (546)
T ss_pred eeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHH
Confidence 5889999999654456899999999999999999999999999999999999999999999999965 567888888888
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc---cCC--CCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK---RTS--LANTLSGGMQRKLSVAMAFIGGSRTV 154 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~--~~~~LSgG~kqrv~ia~al~~~p~ll 154 (251)
|.+..+|+.+-..|+- ...+.++.+++++.+.+. .+. .+-.||.|||+|+++..|++-+.+++
T Consensus 403 FsDyhLF~~ll~~e~~------------as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Il 470 (546)
T COG4615 403 FSDYHLFDQLLGPEGK------------ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDIL 470 (546)
T ss_pred hhhHhhhHhhhCCccC------------CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeE
Confidence 8888888753221111 112456677777776543 333 34589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh-hh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 155 ILDEPTSGVDPYSRRSIWELLIK-YK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 155 llDEPt~gLD~~~~~~l~~~l~~-l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
++||-.+.-||.-|+.++..+.- ++ +|+||+.+|||-.-. ..|||++.+++|++++..
T Consensus 471 v~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF-~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 471 VLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-IHADRLLEMRNGQLSELT 530 (546)
T ss_pred EeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh-hhHHHHHHHhcCceeecc
Confidence 99999999999999999987765 55 599999999996655 479999999999998654
No 381
>KOG0927|consensus
Probab=100.00 E-value=2.1e-33 Score=259.11 Aligned_cols=201 Identities=21% Similarity=0.274 Sum_probs=166.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
+.++|++|.|.++..++++++|-|..++.+++|||||||||||||+++|.+.|+.|.|.-.-. .++++.-
T Consensus 390 i~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H----------~~~~~y~ 459 (614)
T KOG0927|consen 390 IMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH----------NKLPRYN 459 (614)
T ss_pred EEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc----------ccchhhh
Confidence 357899999975557999999999999999999999999999999999999999999864322 2344555
Q ss_pred cCC--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 81 QYN--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 81 q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
|+. .+.-+.++.|++.-. +. .....+.++.++.++||+ +....++.+||+|||.||.+|++++.+|.+|+||
T Consensus 460 Qh~~e~ldl~~s~le~~~~~---~~--~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD 534 (614)
T KOG0927|consen 460 QHLAEQLDLDKSSLEFMMPK---FP--DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLD 534 (614)
T ss_pred hhhHhhcCcchhHHHHHHHh---cc--ccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEec
Confidence 553 334455777766432 21 122345688999999998 5667899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEE-EeecCHHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL-QCCGSSVFL 218 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i-~~~g~~~~~ 218 (251)
|||+|||..+...+.+.|.++. .+||++|||...+.++++++++..+|.+ .+.|+....
T Consensus 535 EPtnhLDi~tid~laeaiNe~~--Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~y 594 (614)
T KOG0927|consen 535 EPTNHLDIETIDALAEAINEFP--GGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIY 594 (614)
T ss_pred CCCcCCCchhHHHHHHHHhccC--CceeeeechhhHHHHHHHHhHhhccCceeecCccHHHH
Confidence 9999999999999999998885 4699999999999999999999999876 467776543
No 382
>KOG0065|consensus
Probab=100.00 E-value=2.8e-33 Score=279.23 Aligned_cols=202 Identities=24% Similarity=0.335 Sum_probs=178.6
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCC
Q psy7367 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP--VSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLT 90 (251)
Q Consensus 13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 90 (251)
.+++|+||+=-++||-.+||+|+|||||||||++|+|-.. ..+|+|.++|.+... ...+|.+|||-|++.-.+.+|
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--ETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch--hhhccccceeecccccCcccc
Confidence 4689999999999999999999999999999999999642 347999999998642 456789999999987779999
Q ss_pred HHHHHHHHHHhc---CCChHHHHHHHHHHHHHcCCCcccCCCCCc----CChhHHHHHHHHHHHccCC-CEEEEeCCCCC
Q psy7367 91 VEEHMWFYSQLK---QVPKDLAQLEISNMIVDLGIPHKRTSLANT----LSGGMQRKLSVAMAFIGGS-RTVILDEPTSG 162 (251)
Q Consensus 91 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----LSgG~kqrv~ia~al~~~p-~llllDEPt~g 162 (251)
|+|-|.|.+.++ .++.++..+-++++++.++|++..+.-++. ||..||+|+.||--|+.+| .||+|||||||
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 999999988876 345555557899999999999998888877 9999999999999999999 99999999999
Q ss_pred CCHHHHHHHHHHHHhhh-CCCeEEEEeCCHH-HHHhhcCEEEEeeC-CEEEeecCHH
Q psy7367 163 VDPYSRRSIWELLIKYK-KGRTVILTTHYMD-EADLLGDRIAIIAA-GKLQCCGSSV 216 (251)
Q Consensus 163 LD~~~~~~l~~~l~~l~-~g~tiii~tHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 216 (251)
||..+...+++.++++. .|.|||.+-|.+. .+.+..|++++|++ |+.++.|++.
T Consensus 961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 99999999999999996 5999999999873 45566899999985 6899999864
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=100.00 E-value=1.2e-31 Score=267.63 Aligned_cols=125 Identities=30% Similarity=0.443 Sum_probs=110.5
Q ss_pred CCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCC
Q psy7367 89 LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGS---RTVILDEPTSGVD 164 (251)
Q Consensus 89 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p---~llllDEPt~gLD 164 (251)
||+.|++.|+....+. .+..++++.+||.. .+++++.+|||||+||+.||++|+.+| +++||||||+|||
T Consensus 792 ltv~E~l~~f~~~~~i------~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD 865 (943)
T PRK00349 792 MTVEEALEFFEAIPKI------ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLH 865 (943)
T ss_pred CcHHHHHHHHHhchhh------hHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCC
Confidence 7899999887654321 23457899999986 578999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHHh
Q psy7367 165 PYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLKN 220 (251)
Q Consensus 165 ~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~~ 220 (251)
+..+..++++|.++. +|.|||++||+++.+. .||+++.| ++|++++.|+++++..
T Consensus 866 ~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 866 FEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999999999999985 5999999999999986 69999999 7999999999987653
No 384
>KOG0927|consensus
Probab=99.97 E-value=8.2e-32 Score=248.59 Aligned_cols=214 Identities=20% Similarity=0.286 Sum_probs=158.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE--EcceeCCCCh-HHhh----
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK--IYNHDIRTDM-TTIR---- 73 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~--~~g~~~~~~~-~~~~---- 73 (251)
+.++|+++.|. +..+++|++|++.+|+-+||+|+|||||||+|++|.|-..|..-++- ...+++..+. ..+.
T Consensus 76 vk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~ 154 (614)
T KOG0927|consen 76 VKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVM 154 (614)
T ss_pred ceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhh
Confidence 46889999995 58999999999999999999999999999999999998887654443 2333332211 1111
Q ss_pred ------cceEEEccCCCCC-CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHH
Q psy7367 74 ------RSLGVCPQYNALF-DKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAM 145 (251)
Q Consensus 74 ------~~i~~v~q~~~l~-~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~ 145 (251)
.++.|...+.... +..--.+....+.+......+....++..+|..+|.. +..++.+..||||++.|++|||
T Consensus 155 ~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr 234 (614)
T KOG0927|consen 155 ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALAR 234 (614)
T ss_pred hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHH
Confidence 1111211111111 1100011111122222233444556677788888764 6778999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCE-EEeecCHH
Q psy7367 146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK-LQCCGSSV 216 (251)
Q Consensus 146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~-i~~~g~~~ 216 (251)
||..+|++|||||||++||+.++..+-+.|.++... ++|+++|+.+.+..+|..|+.+++++ +.+.|+.+
T Consensus 235 ~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 235 ALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYD 305 (614)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHH
Confidence 999999999999999999999999999999988655 89999999999999999999999999 56777754
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=5.2e-32 Score=225.32 Aligned_cols=221 Identities=20% Similarity=0.289 Sum_probs=174.3
Q ss_pred CEEEeEEEEeCC---CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CeeEEEEcceeCCC-ChHH-
Q psy7367 1 MAIQNLSKRFPN---GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV----SSGTAKIYNHDIRT-DMTT- 71 (251)
Q Consensus 1 l~i~~l~~~y~~---~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p----~~G~i~~~g~~~~~-~~~~- 71 (251)
+.++|++..+.. ...+++++|+++.+||+-|++|.+|||||-..|.|+|..+- +.-..++++.++-. ..++
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 357888888832 24699999999999999999999999999999999999763 35566777766532 2222
Q ss_pred ---hhcceEEEccCCC--CCCCCCHHHHHHHH---HHhcCCCh---HHHHHHHHHHHHHcCCCccc---CCCCCcCChhH
Q psy7367 72 ---IRRSLGVCPQYNA--LFDKLTVEEHMWFY---SQLKQVPK---DLAQLEISNMIVDLGIPHKR---TSLANTLSGGM 137 (251)
Q Consensus 72 ---~~~~i~~v~q~~~--l~~~ltv~e~l~~~---~~~~~~~~---~~~~~~~~~~l~~~~l~~~~---~~~~~~LSgG~ 137 (251)
+.+.|+++||+|. |.|.-+|-..+.-. ..+.+..+ ...++++-++|.++|+.+.. ..+|.+|.-||
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE 163 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGE 163 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCc
Confidence 2367899999984 44443443322111 01111111 12345788999999997654 57899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCH
Q psy7367 138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215 (251)
Q Consensus 138 kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~ 215 (251)
-|+|+||.|++.+|++||.||||+++|+..+.+++.+|..+. +|.||+++|||+..+.+.||++-||..|+-++.++.
T Consensus 164 ~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~ 243 (330)
T COG4170 164 CQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPS 243 (330)
T ss_pred ceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccch
Confidence 999999999999999999999999999999999999999985 489999999999999999999999999999998887
Q ss_pred HHHHhh
Q psy7367 216 VFLKNS 221 (251)
Q Consensus 216 ~~~~~~ 221 (251)
+.+.+.
T Consensus 244 e~l~~~ 249 (330)
T COG4170 244 EELVTM 249 (330)
T ss_pred hHHhcC
Confidence 766443
No 386
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.97 E-value=5.7e-31 Score=239.07 Aligned_cols=182 Identities=21% Similarity=0.339 Sum_probs=148.9
Q ss_pred eEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCC
Q psy7367 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNA 84 (251)
Q Consensus 5 ~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~ 84 (251)
+++|.|++ ..|+-=.=+|..||+++++||||-||||+.|+|+|.++|++|. .. .-+|+|-||.-.
T Consensus 347 ~~~k~~g~--F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~---------~~~vSyKPQyI~ 411 (591)
T COG1245 347 DLKKTYGD--FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EE---------DLKVSYKPQYIS 411 (591)
T ss_pred hheeecCc--eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cc---------cceEeecceeec
Confidence 44555532 2344444456678899999999999999999999999999997 11 135899999765
Q ss_pred CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy7367 85 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164 (251)
Q Consensus 85 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD 164 (251)
--.+.||.+.+.-...-. ..... -..++++-++|++.+++++.+|||||.|||+||.||..++++++||||++.||
T Consensus 412 ~~~~gtV~~~l~~~~~~~-~~~s~---~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LD 487 (591)
T COG1245 412 PDYDGTVEDLLRSAIRSA-FGSSY---FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLD 487 (591)
T ss_pred CCCCCcHHHHHHHhhhhh-cccch---hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhcc
Confidence 445679999886644321 11111 13467889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEee
Q psy7367 165 PYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIA 205 (251)
Q Consensus 165 ~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~ 205 (251)
.+.|..+-+.|++.. +++|.+++.||+-.+.-++||+++++
T Consensus 488 vEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 488 VEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 999999999999974 48999999999999999999999986
No 387
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=8.4e-30 Score=254.02 Aligned_cols=124 Identities=27% Similarity=0.427 Sum_probs=106.2
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHcc---CCCEEEEeCCCCCC
Q psy7367 88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIG---GSRTVILDEPTSGV 163 (251)
Q Consensus 88 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~---~p~llllDEPt~gL 163 (251)
+|||.|.+.|+..+... .+..++++.+||.. .+++++.+|||||+||++||++|+. +|+++||||||+||
T Consensus 789 ~~tv~e~~~f~~~~~~i------~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgL 862 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPSI------SRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGL 862 (924)
T ss_pred CCcHHHHHHHHHhccch------hHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCC
Confidence 35667777776544321 13457899999986 4789999999999999999999997 59999999999999
Q ss_pred CHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHH
Q psy7367 164 DPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFL 218 (251)
Q Consensus 164 D~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~ 218 (251)
|+..+..++++|.++. +|.|||++||+++.+. .||++++| ++|++++.|+++++
T Consensus 863 D~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 863 HFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999985 5999999999999985 69999999 79999999998654
No 388
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.97 E-value=2e-30 Score=245.63 Aligned_cols=188 Identities=26% Similarity=0.360 Sum_probs=159.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++..-+.++..+++.||+|++||.+-|.||||||||||+|+|+|+-+.-+|+|.+-. -..+-|+|
T Consensus 393 i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~----------~~~~lflp 462 (604)
T COG4178 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA----------DSALLFLP 462 (604)
T ss_pred eEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC----------CCceEEec
Confidence 57899999987778899999999999999999999999999999999999999899886531 13478999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCC------CCcCChhHHHHHHHHHHHccCCCEE
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL------ANTLSGGMQRKLSVAMAFIGGSRTV 154 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~LSgG~kqrv~ia~al~~~p~ll 154 (251)
|.|.+... |.+|-+.++......+. +.+.++|.++||.++.++. -..||+|||||+++||.|+++|+++
T Consensus 463 Q~PY~p~G-tLre~l~YP~~~~~~~d----~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v 537 (604)
T COG4178 463 QRPYLPQG-TLREALCYPNAAPDFSD----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWV 537 (604)
T ss_pred CCCCCCCc-cHHHHHhCCCCCCCCCh----HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEE
Confidence 99998777 99999998765432332 4577889999987654431 2489999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367 155 ILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAII 204 (251)
Q Consensus 155 llDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l 204 (251)
+|||-|++||+.+...+++++++.-.+.|||-|+|....-. +.++.+-+
T Consensus 538 ~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~-~h~~~l~l 586 (604)
T COG4178 538 FLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWN-FHSRQLEL 586 (604)
T ss_pred EEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHH-HHhhheee
Confidence 99999999999999999999998777899999999976654 44554443
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.97 E-value=1e-30 Score=220.15 Aligned_cols=171 Identities=19% Similarity=0.189 Sum_probs=129.4
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeC---CCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI---RTDMTTIRRSLGVCPQYNALFDKLTVE 92 (251)
Q Consensus 16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~---~~~~~~~~~~i~~v~q~~~l~~~ltv~ 92 (251)
.++++++++.+| +.+|+||||||||||+.+|......... ....|..+ ... ......|.+.||+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~-~~~~~~i~~~~~~~~~~~~---- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKD-GESSAKITVTLKNQGLDAN---- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhC-CCCeEEEEEEEEcCCccCC----
Confidence 457888999888 8899999999999999999854332221 11123211 111 1113568889998776651
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHH
Q psy7367 93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF----IGGSRTVILDEPTSGVDPYSR 168 (251)
Q Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al----~~~p~llllDEPt~gLD~~~~ 168 (251)
.. ......+++++++. .+..++++.+||+|||||++||+|+ +.+|+++||||||++||+..+
T Consensus 84 ----------~~-~~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~ 149 (198)
T cd03276 84 ----------PL-CVLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR 149 (198)
T ss_pred ----------cC-CHHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence 11 11113456677776 6677889999999999999999999 589999999999999999999
Q ss_pred HHHHHHHHhhh-C---CCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367 169 RSIWELLIKYK-K---GRTVILTTHYMDEADLLGDRIAIIAAGK 208 (251)
Q Consensus 169 ~~l~~~l~~l~-~---g~tiii~tHd~~~~~~~~d~i~~l~~G~ 208 (251)
..+.++|.++. + +.||+++||+++++..+ |+|.+|..++
T Consensus 150 ~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 150 KISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence 99999998863 3 36899999999999885 9999998754
No 390
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.97 E-value=1.5e-30 Score=226.18 Aligned_cols=193 Identities=15% Similarity=0.132 Sum_probs=129.3
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee-C-CCC------hHHhh
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD-I-RTD------MTTIR 73 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~-~-~~~------~~~~~ 73 (251)
+++|. +.|.+ .. +|.+.++ +++|+|||||||||||.+|++++.++.|+++..+.+ + ... .....
T Consensus 5 ~l~nf-~~~~~-~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~ 76 (247)
T cd03275 5 ELENF-KSYKG-RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAY 76 (247)
T ss_pred EEECc-cccCC-Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEE
Confidence 45665 45632 22 2333444 999999999999999999999998888887654321 1 110 01122
Q ss_pred cceEEEccCCCC-CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc----------------------cCCCC
Q psy7367 74 RSLGVCPQYNAL-FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK----------------------RTSLA 130 (251)
Q Consensus 74 ~~i~~v~q~~~l-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------------------~~~~~ 130 (251)
-.+.|..|++.. ....++.+.... ..+.+ .....+.++++++.+++... .++++
T Consensus 77 v~~~f~~~~~~~~~~~~~~~~~~~~-~~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~ 153 (247)
T cd03275 77 VTAVYEDDDGEEKTFRRIITGGSSS-YRING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDM 153 (247)
T ss_pred EEEEEEcCCCcEEEEEEEEECCceE-EEECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhH
Confidence 234444443321 111122121110 01111 11123456678888888421 12345
Q ss_pred CcCChhHHHHHHHHHHHccC----CCEEEEeCCCCCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhhcCEEEEee
Q psy7367 131 NTLSGGMQRKLSVAMAFIGG----SRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIA 205 (251)
Q Consensus 131 ~~LSgG~kqrv~ia~al~~~----p~llllDEPt~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l~ 205 (251)
.+||+|||||++||+|++.+ |+++||||||++||+..+..+.+.|.++++ |.+||++||+.+.+ .+||++++|.
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~~~ 232 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALVGVY 232 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEEEEE
Confidence 99999999999999999864 999999999999999999999999999864 89999999997765 6799998886
Q ss_pred C
Q psy7367 206 A 206 (251)
Q Consensus 206 ~ 206 (251)
.
T Consensus 233 ~ 233 (247)
T cd03275 233 R 233 (247)
T ss_pred e
Confidence 3
No 391
>KOG0062|consensus
Probab=99.97 E-value=1.2e-30 Score=239.81 Aligned_cols=197 Identities=20% Similarity=0.283 Sum_probs=149.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|.+.+++..|| ++.+|++-++++..|.-|||+|+||+|||||||+|+. |+|.....+ .+.+- -+++
T Consensus 81 i~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve-----qE~~g--~~t~ 146 (582)
T KOG0062|consen 81 IHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE-----QEVRG--DDTE 146 (582)
T ss_pred eeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch-----hheec--cchH
Confidence 45678999997 5889999999999999999999999999999999997 555443321 11110 1221
Q ss_pred c-CCCCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 81 Q-YNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 81 q-~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
- ...+..++++.+.+.--..+. +. ...+...++|.-+|.++ ...++..+||||-|.|++|||||..+|++||||
T Consensus 147 ~~~~~l~~D~~~~dfl~~e~~l~~~~---~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLD 223 (582)
T KOG0062|consen 147 ALQSVLESDTERLDFLAEEKELLAGL---TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLD 223 (582)
T ss_pred HHhhhhhccHHHHHHHHhhhhhhccc---hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeec
Confidence 1 112333444444443321111 11 11222333899999974 557889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE-eecCHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ-CCGSSV 216 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~-~~g~~~ 216 (251)
|||+.||..+...+-+.|..+. .|+|+||||-.++..+|..|+.+++-++- +.|+-+
T Consensus 224 EPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 224 EPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYS 281 (582)
T ss_pred CCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence 9999999999999999998875 89999999999999999999999988874 456543
No 392
>KOG0062|consensus
Probab=99.96 E-value=2e-29 Score=231.71 Aligned_cols=199 Identities=21% Similarity=0.262 Sum_probs=166.9
Q ss_pred CEEEeEEEEeCCCc-ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~-~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 79 (251)
+++.+|++.|..+. +.+.+++++++.-+-++++|+||+||||++|++.|-..|.+|.+.+.+ |.+|+|.
T Consensus 363 l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~----------r~ri~~f 432 (582)
T KOG0062|consen 363 LRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP----------RLRIKYF 432 (582)
T ss_pred eEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc----------cceecch
Confidence 46788999996545 689999999999999999999999999999999999999999887642 5679999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
+|...=+-++.|.+.-.+...+.+..+ +.++..+..|||+ +...+++..||||||-||++|.+...+|.+|+|||
T Consensus 433 ~Qhhvd~l~~~v~~vd~~~~~~pG~~~----ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDE 508 (582)
T KOG0062|consen 433 AQHHVDFLDKNVNAVDFMEKSFPGKTE----EEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDE 508 (582)
T ss_pred hHhhhhHHHHHhHHHHHHHHhCCCCCH----HHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecC
Confidence 998654444555444433333445443 4567789999998 56677789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEe-ecCH
Q psy7367 159 PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQC-CGSS 215 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~-~g~~ 215 (251)
||+.||..+...+.+.|+.+. ..||+||||.+++..+|+.+|+.++|++.. +|..
T Consensus 509 PTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 509 PTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred CCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccH
Confidence 999999999999998888875 459999999999999999999999999974 4444
No 393
>KOG0066|consensus
Probab=99.96 E-value=5.9e-29 Score=225.27 Aligned_cols=195 Identities=23% Similarity=0.325 Sum_probs=161.5
Q ss_pred EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccC
Q psy7367 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQY 82 (251)
Q Consensus 3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~ 82 (251)
+.+|+|.|.+.++.+..++|-|.--..++|+||||.||||||++|.|-+.|+.|+.+-+ -|-+||+.-|.
T Consensus 589 lH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn----------hrL~iG~FdQh 658 (807)
T KOG0066|consen 589 LHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN----------HRLRIGWFDQH 658 (807)
T ss_pred cccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc----------ceeeeechhhh
Confidence 57899999767899999999999999999999999999999999999999999986532 13469999887
Q ss_pred C--CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCC-CCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367 83 N--ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTS-LANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159 (251)
Q Consensus 83 ~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~kqrv~ia~al~~~p~llllDEP 159 (251)
. .|-..-|..|++ .+..+++.+ .++..|-.|||...++. .+..||||||-||++|-.-+..|++||||||
T Consensus 659 ~~E~L~~Eetp~EyL---qr~FNlpyq----~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP 731 (807)
T KOG0066|consen 659 ANEALNGEETPVEYL---QRKFNLPYQ----EARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP 731 (807)
T ss_pred hHHhhccccCHHHHH---HHhcCCChH----HHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC
Confidence 5 344445666665 344455554 45677999999876654 7899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEe-ecCHH
Q psy7367 160 TSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQC-CGSSV 216 (251)
Q Consensus 160 t~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~-~g~~~ 216 (251)
|++||..+...+-+.|+++. ..|||+|||-..+.+-.-.++|+.+..|-. +|+-+
T Consensus 732 TNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFe 787 (807)
T KOG0066|consen 732 TNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFE 787 (807)
T ss_pred CCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccCChhhccccHH
Confidence 99999999999999999985 459999999998888767889988876643 34433
No 394
>KOG2355|consensus
Probab=99.95 E-value=4.4e-27 Score=195.08 Aligned_cols=202 Identities=21% Similarity=0.324 Sum_probs=161.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----------
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM----------- 69 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~----------- 69 (251)
+++.++.|+|+...+++-|+|++++.|.-..++|.||||||||||+|+|---.-.|.|.+.|++.-...
T Consensus 14 ievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YL 93 (291)
T KOG2355|consen 14 IEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYL 93 (291)
T ss_pred EEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEe
Confidence 578999999976678999999999999999999999999999999999976666699999998752210
Q ss_pred -HHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 70 -TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 70 -~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
.++.+.+++-- +-.+..++++.+.| |+. .+... ++-+++++.++++-.. +.+.+|-|||+||.|++.|+
T Consensus 94 GgeW~~~~~~ag-evplq~D~sae~mi-fgV--~g~dp----~Rre~LI~iLDIdl~W--RmHkvSDGqrRRVQicMGLL 163 (291)
T KOG2355|consen 94 GGEWSKTVGIAG-EVPLQGDISAEHMI-FGV--GGDDP----ERREKLIDILDIDLRW--RMHKVSDGQRRRVQICMGLL 163 (291)
T ss_pred cccccccccccc-cccccccccHHHHH-hhc--cCCCh----hHhhhhhhheeccceE--EEeeccccchhhhHHHHhcc
Confidence 01222222222 23344467775554 432 22222 2345677788776433 57899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC 212 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~ 212 (251)
+.=++|||||-|-.||..++..+++.+++-. +|+||++.||-.+-++....+++.|++|+++..
T Consensus 164 ~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~ 229 (291)
T KOG2355|consen 164 KPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDN 229 (291)
T ss_pred cceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeec
Confidence 9999999999999999999999999999863 599999999999999999999999999999863
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.95 E-value=1.8e-27 Score=200.53 Aligned_cols=145 Identities=25% Similarity=0.282 Sum_probs=111.8
Q ss_pred eeeeeEEEeCCc-EEEEEcCCCCcHHHHHHHHh--------CCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCC
Q psy7367 17 VNGLNVNFYEDQ-ITSFLGHNGAGKTTTISMLM--------GMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87 (251)
Q Consensus 17 l~~isl~i~~Ge-~~~liG~NGaGKSTLlk~l~--------Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~ 87 (251)
+-++||++.+|+ +++|+||||||||||||+|+ |...|.... ..++|+.|..
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~----------------~~~~~~~~~~---- 76 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG----------------SSLPVFENIF---- 76 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc----------------ccCcCccEEE----
Confidence 457899999995 89999999999999999998 544442110 0122322221
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q psy7367 88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167 (251)
Q Consensus 88 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~ 167 (251)
..++..+..+...+.+|+||+|++.++++ +.+|+++|+|||++|+|+..
T Consensus 77 ------------------------------~~lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~ 125 (200)
T cd03280 77 ------------------------------ADIGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVE 125 (200)
T ss_pred ------------------------------EecCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHH
Confidence 11222233455678999999999999988 48999999999999999999
Q ss_pred HHHHHH-HHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 168 RRSIWE-LLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 168 ~~~l~~-~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
+..++. +++++. .+.++|++||+. ++..+||+++.|++|++..++
T Consensus 126 ~~~i~~~~l~~l~~~~~~vi~~tH~~-~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 126 GAALAIAILEELLERGALVIATTHYG-ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECCHH-HHHHHHhcCCCeEEEEEEEec
Confidence 999974 677775 489999999984 566899999999999998763
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.94 E-value=5.9e-27 Score=213.04 Aligned_cols=190 Identities=21% Similarity=0.303 Sum_probs=142.1
Q ss_pred eEEEEeCCCcceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-----------EcceeCCCChHHh
Q psy7367 5 NLSKRFPNGKLAVNGLNV-NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-----------IYNHDIRTDMTTI 72 (251)
Q Consensus 5 ~l~~~y~~~~~il~~isl-~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~-----------~~g~~~~~~~~~~ 72 (251)
++..+|+.+- ++=-.| ...+|.++||+||||-||||-+|+|+|.++|.=|+.. |.|..+..-...+
T Consensus 79 e~vHRYg~Ng--FkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l 156 (591)
T COG1245 79 EVVHRYGVNG--FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL 156 (591)
T ss_pred cceeeccCCc--eEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHH
Confidence 4678886432 333344 3468999999999999999999999999999877531 1111111000011
Q ss_pred h---cceEEEccCC----CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHH
Q psy7367 73 R---RSLGVCPQYN----ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM 145 (251)
Q Consensus 73 ~---~~i~~v~q~~----~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~ 145 (251)
. -++..-||.- ..+.. +|.|.+.-. +.+...+++.++++|...+++.+.+|||||.||++||.
T Consensus 157 ~~g~~r~v~K~QYVd~iPk~~KG-~v~elLk~~---------de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa 226 (591)
T COG1245 157 YEGELRAVHKPQYVDLIPKVVKG-KVGELLKKV---------DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAA 226 (591)
T ss_pred HcCCcceecchHHHHHHHHHhcc-hHHHHHHhh---------hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHH
Confidence 1 1233334432 22222 455544321 11235788999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367 146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAA 206 (251)
Q Consensus 146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l~~ 206 (251)
|++++++++++|||||.||...|-...+.++++.+ +++||++.||+..+.-++|.|.++..
T Consensus 227 ~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 227 ALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 99999999999999999999999999999999975 89999999999999999999998863
No 397
>KOG0060|consensus
Probab=99.94 E-value=8e-26 Score=210.42 Aligned_cols=195 Identities=21% Similarity=0.259 Sum_probs=154.7
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 79 (251)
+++++++..-++ +..+++|+||+|+.|+-+-|.||||||||+|||+++|+-+-.+|++..-.+.- -+.+-|+
T Consensus 434 i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~-------~~~lffl 506 (659)
T KOG0060|consen 434 IEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG-------PKDLFFL 506 (659)
T ss_pred EEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-------CCceEEe
Confidence 468889888765 56688999999999999999999999999999999999988999997643221 1458999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHHHcCCCcccCC-----------CCCcCChhHHHHHHHHHHH
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIVDLGIPHKRTS-----------LANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~kqrv~ia~al 147 (251)
||.|.+... |.+|.+.|+..- ....+....+++...|+.++|.+...+ =...||+||+||+++||.+
T Consensus 507 PQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf 585 (659)
T KOG0060|consen 507 PQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF 585 (659)
T ss_pred cCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence 999998776 999999987431 111111112345556666655443221 1358999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA 206 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~ 206 (251)
.++|++-||||-||++|......+++.+++. |.|.|-|+|.-..- ++-|.++-|+.
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~-kfHd~~L~~~g 641 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLW-KFHDYVLRMDG 641 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHH-hhhhEEEEecC
Confidence 9999999999999999999999999888776 79999999997765 46788888875
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.94 E-value=8.7e-26 Score=192.26 Aligned_cols=179 Identities=15% Similarity=0.200 Sum_probs=112.2
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee----CCCChHHhhcceEEEccCCC---CCCC
Q psy7367 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD----IRTDMTTIRRSLGVCPQYNA---LFDK 88 (251)
Q Consensus 16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~----~~~~~~~~~~~i~~v~q~~~---l~~~ 88 (251)
.++++.+++.+| +.+|+|||||||||||.+|.-.+-...... ..... +.... -...|-..++... -+.+
T Consensus 13 ~~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~~~~~~~i~~g~--~~~~v~~~~~~~~~~~~~~n 88 (213)
T cd03277 13 TYDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRAKKVGEFVKRGC--DEGTIEIELYGNPGNIQVDN 88 (213)
T ss_pred CcceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccccCHHHHhhCCC--CcEEEEEEEEeCCCccccCC
Confidence 357778887776 889999999999999999877653221100 00000 00000 0011222222110 0000
Q ss_pred C---CHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC-CcccCCCCCcCChhHHHHHHHHHHH----ccCCCEEEEeCCC
Q psy7367 89 L---TVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI-PHKRTSLANTLSGGMQRKLSVAMAF----IGGSRTVILDEPT 160 (251)
Q Consensus 89 l---tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LSgG~kqrv~ia~al----~~~p~llllDEPt 160 (251)
+ ...+.+.-...+ .. .+++..+.- .+..+..+.+||+||||++.+|+++ +.+|+++|+||||
T Consensus 89 ~~~~~~q~~~~~~~~~---~~-------~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~ 158 (213)
T cd03277 89 LCQFLPQDRVGEFAKL---SP-------IELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEIN 158 (213)
T ss_pred ceEEEchHHHHHHHhC---Ch-------HhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEeccc
Confidence 0 011111111111 11 122222321 2345668899999999998877554 5899999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-C-CeEEEEeCCHHHHHhhcC--EEEEeeCCE
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-G-RTVILTTHYMDEADLLGD--RIAIIAAGK 208 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g-~tiii~tHd~~~~~~~~d--~i~~l~~G~ 208 (251)
++||+..+..+++.+.++. + | .++|++||++..+..+|| ++++|.+|+
T Consensus 159 ~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 159 QGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred ccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 9999999999999999884 4 5 589999999988888887 788888886
No 399
>KOG0065|consensus
Probab=99.93 E-value=6.7e-26 Score=226.76 Aligned_cols=207 Identities=23% Similarity=0.304 Sum_probs=176.2
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCC
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV---SSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLT 90 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 90 (251)
..+|+|+|.-+++|+.+.++||.||||||||++++|-+.- ..|+|.++|.+...... ++.++|++|+...++.||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~--~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP--KKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc--CceEEeccccccccceeE
Confidence 4699999999999999999999999999999999997642 35699999998854333 678999999999999999
Q ss_pred HHHHHHHHHHhcCC-------ChHHHH-HHHHHHHHHcCCCcccCCCC-----CcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 91 VEEHMWFYSQLKQV-------PKDLAQ-LEISNMIVDLGIPHKRTSLA-----NTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 91 v~e~l~~~~~~~~~-------~~~~~~-~~~~~~l~~~~l~~~~~~~~-----~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
|+|.+.|.++..+. .+.+.. ...+.+++.+||++.++..+ .-.|||||+||++|-+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 99999998876532 222211 14678999999998877655 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhC--CCeEEEEeCCH-HHHHhhcCEEEEeeCCEEEeecCHHHHHhhh
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYM-DEADLLGDRIAIIAAGKLQCCGSSVFLKNSF 222 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~~--g~tiii~tHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 222 (251)
|+|.|||..+.-++++.|+++.. +.|++++-|.. +++..+.|.|++|.+|+++..|+.++....+
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yF 353 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYF 353 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHH
Confidence 99999999999999999999853 77777777754 6777889999999999999999987765544
No 400
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.92 E-value=2.5e-25 Score=187.51 Aligned_cols=146 Identities=17% Similarity=0.139 Sum_probs=110.1
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE 93 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 93 (251)
+.+++|++|+. |++++|+||||||||||+|+|+|... +...|.++.. -.+++|...+|+.+|+.|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a--------~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA--------SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec--------CccCcccceEEEeccchh
Confidence 45667776665 79999999999999999999988553 2234544421 136677677899999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-
Q psy7367 94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW- 172 (251)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~- 172 (251)
|+.+..... ..+. +++.++++.+++ .+|+++|+||||+|+|+..+..+.
T Consensus 79 ~l~~~~s~~---~~e~-~~~~~iL~~~~~--------------------------~~p~llllDEp~~glD~~~~~~l~~ 128 (199)
T cd03283 79 DLRDGISYF---YAEL-RRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGTNSRERQAASA 128 (199)
T ss_pred ccccccChH---HHHH-HHHHHHHHhccC--------------------------CCCeEEEEecccCCCCHHHHHHHHH
Confidence 998754321 2222 467888888873 799999999999999999998775
Q ss_pred HHHHhhh-CCCeEEEEeCCHHHHHhh--cCEEEEe
Q psy7367 173 ELLIKYK-KGRTVILTTHYMDEADLL--GDRIAII 204 (251)
Q Consensus 173 ~~l~~l~-~g~tiii~tHd~~~~~~~--~d~i~~l 204 (251)
.++..+. .+.++|++||+++++..+ .+++-.+
T Consensus 129 ~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 129 AVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 4677774 589999999999998876 4455444
No 401
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.92 E-value=3.5e-25 Score=189.65 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=117.6
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceE-EEccCCCCCCCCCH
Q psy7367 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLG-VCPQYNALFDKLTV 91 (251)
Q Consensus 13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~v~q~~~l~~~ltv 91 (251)
.+.+.+|+++++.++++++|+||||+|||||+++++- ..+..++| |+|.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~--------------------~~~la~~g~~vpa~~~~~~---- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV--------------------IVLMAQIGCFVPCDSADIP---- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH--------------------HHHHHHhCCCcCcccEEEe----
Confidence 3578999999999999999999999999999999991 01223445 5555443222
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHH
Q psy7367 92 EEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF--IGGSRTVILDEP---TSGVDPY 166 (251)
Q Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al--~~~p~llllDEP---t~gLD~~ 166 (251)
.+++++..+++.+.. ...+|.|++|++.+++++ +.+|+++||||| |+++|+.
T Consensus 72 --------------------~~~~il~~~~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~ 128 (222)
T cd03285 72 --------------------IVDCILARVGASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGF 128 (222)
T ss_pred --------------------ccceeEeeeccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHH
Confidence 122345556665443 578999999999999999 899999999999 9999999
Q ss_pred HHHHHH-HHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367 167 SRRSIW-ELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214 (251)
Q Consensus 167 ~~~~l~-~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~ 214 (251)
+..... +.+.+ ..+.++|++||+ .++.++||++..+++|++....+
T Consensus 129 ~~~~~il~~l~~-~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 129 GLAWAIAEYIAT-QIKCFCLFATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHHh-cCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 886443 33332 247999999996 77788999999999999987654
No 402
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.8e-24 Score=189.74 Aligned_cols=76 Identities=22% Similarity=0.284 Sum_probs=69.5
Q ss_pred cCChhHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367 132 TLSGGMQRKLSVAMAFIG----GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG 207 (251)
Q Consensus 132 ~LSgG~kqrv~ia~al~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G 207 (251)
.|||||+||+++|++++. +|+++|+||||++||+..+..+.+.+.++.++.|+|++||++..+ .+||++++|.++
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~l~~~ 248 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFLVEKE 248 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEEEEEe
Confidence 499999999999997654 999999999999999999999999999987789999999999865 689999999887
Q ss_pred E
Q psy7367 208 K 208 (251)
Q Consensus 208 ~ 208 (251)
.
T Consensus 249 ~ 249 (276)
T cd03241 249 V 249 (276)
T ss_pred c
Confidence 4
No 403
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.91 E-value=5.3e-24 Score=176.49 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=67.7
Q ss_pred CChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367 133 LSGGMQRKLSVAMAFI----GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAA 206 (251)
Q Consensus 133 LSgG~kqrv~ia~al~----~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~ 206 (251)
||+||+||++||++++ .+|+++|+|||+++||+..+..+.+.+.++. +|.++|++||+++.+. .||+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 9999999999999996 6999999999999999999999999999985 4799999999998875 7999999875
No 404
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.91 E-value=4.3e-24 Score=174.31 Aligned_cols=138 Identities=27% Similarity=0.366 Sum_probs=103.0
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceE-EEccCCCCCCCCCHHHHHH
Q psy7367 18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLG-VCPQYNALFDKLTVEEHMW 96 (251)
Q Consensus 18 ~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~v~q~~~l~~~ltv~e~l~ 96 (251)
...++.+.++.+..|+|||||||||+++++....-..+|.+... .+. +.+ ++++....+ +
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~---------~~g~~~~~~~~~~--------i- 72 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV---------KAGCIVAAVSAEL--------I- 72 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc---------cCCCcceeeEEEE--------e-
Confidence 44456666667999999999999999999887765555544431 111 011 111111111 0
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHH
Q psy7367 97 FYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG----GSRTVILDEPTSGVDPYSRRSIW 172 (251)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~----~p~llllDEPt~gLD~~~~~~l~ 172 (251)
+ ...+||+||+||+++|++|+. +|+++|+|||++|+|+..+..+.
T Consensus 73 ~-------------------------------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~ 121 (162)
T cd03227 73 F-------------------------------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALA 121 (162)
T ss_pred h-------------------------------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 0 001199999999999999987 78999999999999999999999
Q ss_pred HHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367 173 ELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAA 206 (251)
Q Consensus 173 ~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~ 206 (251)
+.+.++. ++.++|++||+.+.+. .+|+++.|..
T Consensus 122 ~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~~l~~ 155 (162)
T cd03227 122 EAILEHLVKGAQVIVITHLPELAE-LADKLIHIKK 155 (162)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHH-hhhhEEEEEE
Confidence 9998873 4899999999999986 5899999864
No 405
>KOG0066|consensus
Probab=99.90 E-value=1.3e-24 Score=197.26 Aligned_cols=212 Identities=20% Similarity=0.272 Sum_probs=161.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCeeEEEEcceeCCC-ChH-------
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG--MLPVSSGTAKIYNHDIRT-DMT------- 70 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G--l~~p~~G~i~~~g~~~~~-~~~------- 70 (251)
|.++|++.+-. ++..+.+.||.|-.|..|||+||||-||||||+-|+. +--|..=.|.+..+.+.. ...
T Consensus 265 IKiEnF~ISA~-Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~ 343 (807)
T KOG0066|consen 265 IKIENFDISAQ-GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK 343 (807)
T ss_pred ceeeeeeeecc-cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHH
Confidence 56888888874 5789999999999999999999999999999999986 333445567777766521 111
Q ss_pred HhhcceEEEccCCCC-----CCCCCHHHHHHH-HHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHH
Q psy7367 71 TIRRSLGVCPQYNAL-----FDKLTVEEHMWF-YSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSV 143 (251)
Q Consensus 71 ~~~~~i~~v~q~~~l-----~~~ltv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~i 143 (251)
.-.++..++-.+..| -...|+.|-+.- +..++......++.+++.+|.-+|++ +..+++...+|||-|.||++
T Consensus 344 aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSL 423 (807)
T KOG0066|consen 344 ADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSL 423 (807)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhH
Confidence 001223333222111 234577776643 23344333444456788899999997 45678889999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEe-ecCH
Q psy7367 144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQC-CGSS 215 (251)
Q Consensus 144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~-~g~~ 215 (251)
||||..+|-+|+|||||+.||..+...+-+.|..++ +|++|+|||..++..+|..|+.|++.++.+ .|..
T Consensus 424 ARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk--KTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 424 ARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred HHHHhcCceeeeecCCccccccceeeehhhHHhhhh--heeEEEecccchHHHHHHHHhhhhhhhhhhhcchH
Confidence 999999999999999999999999998888887775 799999999999999999999999998853 4553
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.90 E-value=4.5e-23 Score=186.10 Aligned_cols=178 Identities=20% Similarity=0.321 Sum_probs=144.3
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--------CCCCeeEEEEcceeCCCChHHhhcceEEEccCC-CC
Q psy7367 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM--------LPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYN-AL 85 (251)
Q Consensus 15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl--------~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~-~l 85 (251)
.+++|+||++++|++++|+|+|||||||+|++|+|. ++|++|.|.+--.. --+++|-+. .-
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt----------~~a~iPge~Ep~ 466 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT----------VSALIPGEYEPE 466 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc----------hhhccCcccccc
Confidence 589999999999999999999999999999999996 47899988763111 123555432 12
Q ss_pred CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc--ccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCC
Q psy7367 86 FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH--KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV 163 (251)
Q Consensus 86 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gL 163 (251)
|..-|+.|++.- ..+ . -..+.++|.+.|+.+ +..+++++||.|||.|+.||.+++..|.+++.||=.|.|
T Consensus 467 f~~~tilehl~s---~tG--D---~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhL 538 (593)
T COG2401 467 FGEVTILEHLRS---KTG--D---LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHL 538 (593)
T ss_pred cCchhHHHHHhh---ccC--c---hhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhc
Confidence 335566666632 111 1 123567899999975 446789999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhh-cCEEEEeeCCEEE
Q psy7367 164 DPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLL-GDRIAIIAAGKLQ 210 (251)
Q Consensus 164 D~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~-~d~i~~l~~G~i~ 210 (251)
|+.+...+..-|.++. .|.|++++||..+....+ -|+++.+.-|+..
T Consensus 539 D~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 539 DELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred CHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 9999999999999985 399999999999999999 6999998877654
No 407
>KOG0064|consensus
Probab=99.90 E-value=4.3e-24 Score=197.11 Aligned_cols=186 Identities=20% Similarity=0.271 Sum_probs=142.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|.++|+-.--+.+..++..++|+|++|--+.|+||||||||+|+|+|.|+-|...|...+ .. ..++-|+|
T Consensus 482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~------P~----~~~mFYIP 551 (728)
T KOG0064|consen 482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI------PR----PNNIFYIP 551 (728)
T ss_pred eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec------CC----CcceEecc
Confidence 356677666665567889999999999999999999999999999999999886666543 11 23599999
Q ss_pred cCCCCCCCCCHHHHHHHHHH-----hcCCChHHHHHHHHHHHHHcCCCcccCCCC---------CcCChhHHHHHHHHHH
Q psy7367 81 QYNALFDKLTVEEHMWFYSQ-----LKQVPKDLAQLEISNMIVDLGIPHKRTSLA---------NTLSGGMQRKLSVAMA 146 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~kqrv~ia~a 146 (251)
|.|.+- .=|.+|.+.++-. -++...+ ..+..|+.+.|++.+.+-. ..||||||||+++||.
T Consensus 552 QRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~----dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm 626 (728)
T KOG0064|consen 552 QRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQ----DLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARM 626 (728)
T ss_pred CCCccC-cCcccceeecCCcHHHHHhcCCCHH----HHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHH
Confidence 999865 3478888766532 1233332 3555666666655443332 4799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAII 204 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l 204 (251)
+-++|++.+|||-||++.+.....+++..+.. |.+.+-+||.+..... -.+++-+
T Consensus 627 ~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~-h~~ll~~ 681 (728)
T KOG0064|consen 627 FYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKY-HTHLLEF 681 (728)
T ss_pred HhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHH-HHHHHhc
Confidence 99999999999999999999888888776654 8999999999877653 3444433
No 408
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.89 E-value=5.4e-23 Score=173.95 Aligned_cols=143 Identities=20% Similarity=0.267 Sum_probs=109.6
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92 (251)
Q Consensus 13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 92 (251)
++.+.+|++|++++|++++|+||||+||||++|+++++. +..++|+.. |..+..+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------------------~la~~G~~v--pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA--------------------IMAQIGCFV--PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH--------------------HHHHcCCCc--chhhcCccCh
Confidence 357999999999999999999999999999999999873 122334321 4445556666
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q psy7367 93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172 (251)
Q Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~ 172 (251)
|++.. .++..+...+..+.+|.|++|+ ..+.+++.+|+++|+|||++|+|+.....+.
T Consensus 73 d~I~~---------------------~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~ 130 (204)
T cd03282 73 NRLLS---------------------RLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAIS 130 (204)
T ss_pred hheeE---------------------ecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHH
Confidence 66632 2333444566788999999975 5666788999999999999999997766654
Q ss_pred -HHHHhhh-CCCeEEEEeCCHHHHHhhcC
Q psy7367 173 -ELLIKYK-KGRTVILTTHYMDEADLLGD 199 (251)
Q Consensus 173 -~~l~~l~-~g~tiii~tHd~~~~~~~~d 199 (251)
.++..+. .+.++|++||+.+.+..+++
T Consensus 131 ~~il~~l~~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 131 LAILECLIKKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHHHHHHHhcCCEEEEECChHHHHHHhhc
Confidence 4566664 58999999999999987664
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.89 E-value=1.9e-22 Score=201.88 Aligned_cols=129 Identities=25% Similarity=0.403 Sum_probs=110.8
Q ss_pred CCCCHHHHHHHHHHhcCCChH----------HHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHccCC--CE
Q psy7367 87 DKLTVEEHMWFYSQLKQVPKD----------LAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGS--RT 153 (251)
Q Consensus 87 ~~ltv~e~l~~~~~~~~~~~~----------~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~~~p--~l 153 (251)
..|||.|.+.|.-.+ +.... +..++++ +|+.+||.+. +++++.+|||||+|||+||+||+.+| ++
T Consensus 435 ~~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l 512 (943)
T PRK00349 435 SELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 512 (943)
T ss_pred hcCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence 467899988885443 22221 3344553 7888999876 79999999999999999999999997 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHH
Q psy7367 154 VILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFL 218 (251)
Q Consensus 154 lllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~ 218 (251)
+||||||+|||+..+..++++|++++ +|.|||+|+|+++++. .||++++| ++|++++.|+++++
T Consensus 513 lILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~ 583 (943)
T PRK00349 513 YVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEI 583 (943)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHH
Confidence 99999999999999999999999996 4999999999999986 69999999 99999999998776
No 410
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.89 E-value=4.5e-22 Score=207.30 Aligned_cols=197 Identities=17% Similarity=0.157 Sum_probs=146.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh----------CCCCCCeeEEEEcceeCCCCh-----------HHhhc
Q psy7367 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM----------GMLPVSSGTAKIYNHDIRTDM-----------TTIRR 74 (251)
Q Consensus 16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~----------Gl~~p~~G~i~~~g~~~~~~~-----------~~~~~ 74 (251)
=|+|++.+|+-|.+++|.|.+|||||||++-.. |... -+--|.++-.++.... +.+|+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~-~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSV-FSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccc-cCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 489999999999999999999999999997544 3321 2334667666653210 11111
Q ss_pred c--------------------------------------eEEEccCC-----------------CCC--------CCCCH
Q psy7367 75 S--------------------------------------LGVCPQYN-----------------ALF--------DKLTV 91 (251)
Q Consensus 75 ~--------------------------------------i~~v~q~~-----------------~l~--------~~ltv 91 (251)
- +.|+++-. .-| -+|||
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 1 11222210 001 23566
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHH
Q psy7367 92 EEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGG---SRTVILDEPTSGVDPYS 167 (251)
Q Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~---p~llllDEPt~gLD~~~ 167 (251)
.|-+.|+... ... .+.-+.|..+||.. .+.++..+|||||.||+-||..|..+ +.+++|||||.||++..
T Consensus 1664 ~ea~~~F~~~-----~~i-~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d 1737 (1809)
T PRK00635 1664 EEVAETFPFL-----KKI-QKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQ 1737 (1809)
T ss_pred HHHHHHhhcc-----HHH-HHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHH
Confidence 6666665321 112 33457889999985 45899999999999999999999875 78999999999999999
Q ss_pred HHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEee------CCEEEeecCHHHHHh
Q psy7367 168 RRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIA------AGKLQCCGSSVFLKN 220 (251)
Q Consensus 168 ~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~------~G~i~~~g~~~~~~~ 220 (251)
.+.+++.|.++. .|.|||++.||++.+.. ||+|+-|- .|+|++.|+|+++..
T Consensus 1738 ~~~Ll~~l~~L~~~g~tvivieH~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1738 KSALLVQLRTLVSLGHSVIYIDHDPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999995 69999999999999986 99999994 478999999998864
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.88 E-value=2.3e-23 Score=175.70 Aligned_cols=152 Identities=15% Similarity=0.151 Sum_probs=104.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-CCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHH
Q psy7367 18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML-PVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMW 96 (251)
Q Consensus 18 ~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~ 96 (251)
-..++++.+|++++|+||||||||||||+|++.. .+..|.... ..+..+++..|.. ..++
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~----------~~~~~i~~~dqi~---~~~~------ 80 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP----------AESASIPLVDRIF---TRIG------ 80 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc----------ccccccCCcCEEE---EEec------
Confidence 3446777799999999999999999999999543 222221100 0012233322211 1111
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HH
Q psy7367 97 FYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LL 175 (251)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~-~l 175 (251)
..+......+.+|.+++| +..+.+++.+|+++|+||||+|+|+..+..+.. ++
T Consensus 81 -------------------------~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll 134 (202)
T cd03243 81 -------------------------AEDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVL 134 (202)
T ss_pred -------------------------CcccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHH
Confidence 111222334566766666 666678889999999999999999999988765 45
Q ss_pred Hhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCH
Q psy7367 176 IKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215 (251)
Q Consensus 176 ~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~ 215 (251)
..+. .+.++|++||+.+.+. .|+++..+.++++...++.
T Consensus 135 ~~l~~~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~~~~~ 174 (202)
T cd03243 135 EHLLEKGCRTLFATHFHELAD-LPEQVPGVKNLHMEELITT 174 (202)
T ss_pred HHHHhcCCeEEEECChHHHHH-HhhcCCCeEEEEEEEEecC
Confidence 6564 4899999999987766 6889999999999877654
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=6.4e-22 Score=197.80 Aligned_cols=129 Identities=24% Similarity=0.405 Sum_probs=107.8
Q ss_pred CCCHHHHHHHHHHhcCCCh---------HHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHccCC--CEEE
Q psy7367 88 KLTVEEHMWFYSQLKQVPK---------DLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGS--RTVI 155 (251)
Q Consensus 88 ~ltv~e~l~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~~~p--~lll 155 (251)
.|||.|.+.|...+.-... .+..+++ +.+..+||... +++++.+|||||+|||.||+||+.+| ++||
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llI 512 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYV 512 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEE
Confidence 5788888887665421110 1122233 34777899766 78999999999999999999999986 8999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHH
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFL 218 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~ 218 (251)
|||||+|||+..+..++++|++++ +|.|||+|+||++++. .||++++| ++|+|++.|+++.+
T Consensus 513 LDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 513 LDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYVIDIGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEEEEecccccCCCCEEeeccCHHHH
Confidence 999999999999999999999996 5999999999999986 89999999 99999999998776
No 413
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.88 E-value=2.7e-21 Score=186.07 Aligned_cols=126 Identities=31% Similarity=0.456 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCC---CEEEEeCCCCCC
Q psy7367 88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGS---RTVILDEPTSGV 163 (251)
Q Consensus 88 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p---~llllDEPt~gL 163 (251)
+|||.|-..|+... +. . .+.-+.|..+||.. .+.++..+|||||.|||-||.-|.... -++||||||.||
T Consensus 783 ~MTveEA~~FF~~~---p~--I-~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGL 856 (935)
T COG0178 783 DMTVEEALEFFEAI---PK--I-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 856 (935)
T ss_pred hccHHHHHHHHhcc---hH--H-HHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCC
Confidence 45666666665432 11 2 23446788889984 568999999999999999999998888 999999999999
Q ss_pred CHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHHh
Q psy7367 164 DPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLKN 220 (251)
Q Consensus 164 D~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~~ 220 (251)
-....+++++.|.++. +|-|||++.|+++.+. .||.|+-| ..|+|++.|+|+++..
T Consensus 857 H~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 857 HFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999995 6999999999999986 59999998 4579999999998865
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2.9e-21 Score=170.00 Aligned_cols=78 Identities=24% Similarity=0.296 Sum_probs=68.6
Q ss_pred CCCcCChhHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhc-
Q psy7367 129 LANTLSGGMQRKLSVAMAFI---------GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLG- 198 (251)
Q Consensus 129 ~~~~LSgG~kqrv~ia~al~---------~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~- 198 (251)
....+|+||||+++||++|+ .+|+++|+||||++||+..+..+++.+.++. .+++++|+...+..+|
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~ 256 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWL 256 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhc
Confidence 34568999999999999985 7999999999999999999999999998764 4778888888888888
Q ss_pred --CEEEEeeCCEE
Q psy7367 199 --DRIAIIAAGKL 209 (251)
Q Consensus 199 --d~i~~l~~G~i 209 (251)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 78999999986
No 415
>KOG0063|consensus
Probab=99.86 E-value=2.6e-21 Score=175.12 Aligned_cols=183 Identities=22% Similarity=0.293 Sum_probs=147.6
Q ss_pred EEeCCCcceeeeeeEEEeCCc-----EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccC
Q psy7367 8 KRFPNGKLAVNGLNVNFYEDQ-----ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQY 82 (251)
Q Consensus 8 ~~y~~~~~il~~isl~i~~Ge-----~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~ 82 (251)
++|++-+.-+.+..|.|+.|+ ++..+|.||.|||||+++++|.++|++|. ++. .-.|+|=||.
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p------~lnVSykpqk 410 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIP------VLNVSYKPQK 410 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccc------ccceeccccc
Confidence 456544556788899998885 78999999999999999999999998762 111 1247888887
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy7367 83 NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162 (251)
Q Consensus 83 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~g 162 (251)
..--..-||++.+.--.+-.-... +-+.++++-+.+++..++.+..|||||+|||++|.+|-..+++++.|||.+-
T Consensus 411 ispK~~~tvR~ll~~kIr~ay~~p----qF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAy 486 (592)
T KOG0063|consen 411 ISPKREGTVRQLLHTKIRDAYMHP----QFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAY 486 (592)
T ss_pred cCccccchHHHHHHHHhHhhhcCH----HHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhh
Confidence 544334588887644222111111 2356778888999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhh--hCCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367 163 VDPYSRRSIWELLIKY--KKGRTVILTTHYMDEADLLGDRIAIIAA 206 (251)
Q Consensus 163 LD~~~~~~l~~~l~~l--~~g~tiii~tHd~~~~~~~~d~i~~l~~ 206 (251)
||.+.+..--..++++ +.++|-.++.||+-.+..++||+++.+.
T Consensus 487 lDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 487 LDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred cChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 9999999988888885 5689999999999999999999999864
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.84 E-value=1.3e-20 Score=165.47 Aligned_cols=139 Identities=18% Similarity=0.179 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC--ChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT--DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 105 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 105 (251)
.-++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++...++++||.. +.+.++|.+|..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k-------- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK-------- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH--------
Confidence 5689999999999999999999999999999999999853 2345666788889865 4566777665311
Q ss_pred hHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEE
Q psy7367 106 KDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVI 185 (251)
Q Consensus 106 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tii 185 (251)
.. |+ .+++++ .+|+++|+|||++ .+.+..++..+..|.++|
T Consensus 183 -------~~---------------------~~---~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G~~vI 223 (270)
T TIGR02858 183 -------AE---------------------GM---MMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAGVSII 223 (270)
T ss_pred -------HH---------------------HH---HHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCCCEEE
Confidence 00 00 333333 6999999999974 344555555566799999
Q ss_pred EEeCCHHH--H-----------HhhcCEEEEeeCCEEEeecCHH
Q psy7367 186 LTTHYMDE--A-----------DLLGDRIAIIAAGKLQCCGSSV 216 (251)
Q Consensus 186 i~tHd~~~--~-----------~~~~d~i~~l~~G~i~~~g~~~ 216 (251)
++||+... + ..++||+++|++|+ ..|+++
T Consensus 224 ~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~ 265 (270)
T TIGR02858 224 ATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVE 265 (270)
T ss_pred EEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCcee
Confidence 99997655 4 36689999999876 555553
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.83 E-value=1e-20 Score=161.38 Aligned_cols=153 Identities=20% Similarity=0.221 Sum_probs=104.7
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE 93 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 93 (251)
+.+.+|++|+..+ ++++|+||||||||||||+++++.-. |+ .|..+ +..+..++++.| +|+.+++.|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v----p~~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV----PASKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee----ccccceecceee---EeccCCchh
Confidence 4688999999988 99999999999999999999875422 11 11111 112345777754 567788888
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHH--HccCCCEEEEeCC---CCCCCHHHH
Q psy7367 94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMA--FIGGSRTVILDEP---TSGVDPYSR 168 (251)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~a--l~~~p~llllDEP---t~gLD~~~~ 168 (251)
++..+. |.=+..++.++++ .+.+|+++||||| |+++|....
T Consensus 85 ~ls~g~----------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~ 130 (216)
T cd03284 85 DLAGGR----------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI 130 (216)
T ss_pred hhccCc----------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Confidence 875531 1112222333333 3679999999999 888887652
Q ss_pred HHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367 169 RSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 216 (251)
Q Consensus 169 ~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 216 (251)
...++..+ +. +.++|++||+. ++..++|++..++++++...++.+
T Consensus 131 --~~~il~~l~~~~~~~vi~~TH~~-~l~~l~~~~~~v~~~~~~~~~~~~ 177 (216)
T cd03284 131 --AWAIVEYLHEKIGAKTLFATHYH-ELTELEGKLPRVKNFHVAVKEKGG 177 (216)
T ss_pred --HHHHHHHHHhccCCcEEEEeCcH-HHHHHhhcCCCeEEEEEEEEeeCC
Confidence 23344444 23 78999999997 455689998888889887765543
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.77 E-value=2.6e-19 Score=149.13 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=65.7
Q ss_pred HcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-HHHHhhh-C-CCeEEEEeCCHHHHH
Q psy7367 119 DLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW-ELLIKYK-K-GRTVILTTHYMDEAD 195 (251)
Q Consensus 119 ~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~-~-g~tiii~tHd~~~~~ 195 (251)
.++..+..++..+++|+|++|...+++. +.+|+++|+|||++|+|+.....+. .+++.+. + +.++|++||+++ +.
T Consensus 48 ~~~~~d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~ 125 (185)
T smart00534 48 RIGASDSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LT 125 (185)
T ss_pred EeCCCCchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HH
Confidence 3444555667788999998875444433 4599999999999999999887765 5556664 3 899999999995 56
Q ss_pred hhcCEEEEeeCCEEE
Q psy7367 196 LLGDRIAIIAAGKLQ 210 (251)
Q Consensus 196 ~~~d~i~~l~~G~i~ 210 (251)
++||+.--++++.+.
T Consensus 126 ~~~~~~~~v~~~~~~ 140 (185)
T smart00534 126 KLADEHPGVRNLHMS 140 (185)
T ss_pred HHhhcCccceEEEEE
Confidence 688864444555443
No 419
>PRK00064 recF recombination protein F; Reviewed
Probab=99.77 E-value=5.4e-17 Score=148.47 Aligned_cols=79 Identities=28% Similarity=0.356 Sum_probs=69.7
Q ss_pred CCCcCChhHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhc-
Q psy7367 129 LANTLSGGMQRKLSVAMAFI---------GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLG- 198 (251)
Q Consensus 129 ~~~~LSgG~kqrv~ia~al~---------~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~- 198 (251)
....+|.||+|++++|++|+ .+|+++|||||+++||+..+..+++.+.++ +..++++||+.+.+...+
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~ 347 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLE 347 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhc
Confidence 34689999999999999986 799999999999999999999999999765 357999999998877764
Q ss_pred -CEEEEeeCCEE
Q psy7367 199 -DRIAIIAAGKL 209 (251)
Q Consensus 199 -d~i~~l~~G~i 209 (251)
++++.|++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57999999987
No 420
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.75 E-value=1.5e-17 Score=141.66 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=91.1
Q ss_pred eEEEeCC--cEEEEEcCCCCcHHHHHHHHhC--CCCCCeeEEEEcceeCCCChHHhhcceEEEccCCC-CCCCCCHHHHH
Q psy7367 21 NVNFYED--QITSFLGHNGAGKTTTISMLMG--MLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNA-LFDKLTVEEHM 95 (251)
Q Consensus 21 sl~i~~G--e~~~liG~NGaGKSTLlk~l~G--l~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~-l~~~ltv~e~l 95 (251)
++.+.++ .+++|+||||+|||||||.++. ++ +..|...... ...++|..|... +-...++.+++
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~----------~~~~~~~d~i~~~l~~~~si~~~~ 89 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD----------SATIGLVDKIFTRMSSRESVSSGQ 89 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC----------CcEEeeeeeeeeeeCCccChhhcc
Confidence 4445554 7999999999999999999984 33 5566544321 134677777542 22222333222
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH-HHHH
Q psy7367 96 WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS-IWEL 174 (251)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~-l~~~ 174 (251)
. .+ .-+-||+++|++++.+|+++|+|||++|+|+..... +..+
T Consensus 90 S---------------------------~f---------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ai 133 (213)
T cd03281 90 S---------------------------AF---------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIAT 133 (213)
T ss_pred c---------------------------hH---------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHH
Confidence 1 00 224588999999999999999999999999976444 4567
Q ss_pred HHhhh-C---CCeEEEEeCCHHHHHhhc
Q psy7367 175 LIKYK-K---GRTVILTTHYMDEADLLG 198 (251)
Q Consensus 175 l~~l~-~---g~tiii~tHd~~~~~~~~ 198 (251)
++++. . +.++|++||+.+.+....
T Consensus 134 l~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 134 IEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 77764 3 358999999999988764
No 421
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.75 E-value=3.5e-18 Score=169.08 Aligned_cols=132 Identities=22% Similarity=0.301 Sum_probs=95.2
Q ss_pred eeEEEeCC-cEEEEEcCCCCcHHHHHHHHhCC-CCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHH
Q psy7367 20 LNVNFYED-QITSFLGHNGAGKTTTISMLMGM-LPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF 97 (251)
Q Consensus 20 isl~i~~G-e~~~liG~NGaGKSTLlk~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~ 97 (251)
+|+++.++ ++++|+||||+|||||||+++|. +.+..| .++|..... .+.+.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G--------------------~~Vpa~~~~--~~~~~d~i~- 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG--------------------IPIPANEHS--EIPYFEEIF- 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC--------------------CCccCCccc--cccchhhee-
Confidence 78899887 99999999999999999999986 333333 144443211 011112210
Q ss_pred HHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH-HHHHH
Q psy7367 98 YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI-WELLI 176 (251)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l-~~~l~ 176 (251)
..... ........+++|+||++++.|++++ .+|+++|+|||++|+||.....+ ..++.
T Consensus 371 ----~~i~~----------------~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe 429 (771)
T TIGR01069 371 ----ADIGD----------------EQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILE 429 (771)
T ss_pred ----eecCh----------------HhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 01111 1122345788999999999998886 89999999999999999999999 46777
Q ss_pred hhh-CCCeEEEEeCCHHHHH
Q psy7367 177 KYK-KGRTVILTTHYMDEAD 195 (251)
Q Consensus 177 ~l~-~g~tiii~tHd~~~~~ 195 (251)
.+. .|.++|++||+.+...
T Consensus 430 ~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 430 YLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHHhcCCEEEEECChHHHHH
Confidence 775 5899999999987654
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.73 E-value=2.9e-18 Score=145.99 Aligned_cols=177 Identities=19% Similarity=0.283 Sum_probs=101.2
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-CCC--CCCeeEEEEcceeCCC---ChHHhhcceEEEccCCCCC----C
Q psy7367 18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLM-GML--PVSSGTAKIYNHDIRT---DMTTIRRSLGVCPQYNALF----D 87 (251)
Q Consensus 18 ~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~-Gl~--~p~~G~i~~~g~~~~~---~~~~~~~~i~~v~q~~~l~----~ 87 (251)
+...+.+.+| +..|+|||||||||++.+|. .+- +..+....-...-+.. ........|...+++..-. .
T Consensus 16 ~~~~~~~~~~-~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSPG-LNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTSS-EEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCCC-CEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 5667777664 99999999999999999993 222 1111110000000000 0011123355554443211 0
Q ss_pred -CCCHHHHHHHH----HHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH----ccCCCEEEEeC
Q psy7367 88 -KLTVEEHMWFY----SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF----IGGSRTVILDE 158 (251)
Q Consensus 88 -~ltv~e~l~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al----~~~p~llllDE 158 (251)
...+...+.-. ..+.+ .....+.+.+.+..+.+... .||||||.+++||.-| ..+++++||||
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~--~~~~~~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDE 166 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKING--KKVRLKDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDE 166 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETT--EEE-HHHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEES
T ss_pred ccccccccccccccccccccc--cccccccccccccccccccc------ccccccccccccccccccccccccccccccc
Confidence 00000000000 00111 11122446666776666543 9999999999999765 46889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367 159 PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAII 204 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l 204 (251)
|.++||...+..+.++|.++.++.=+|++||+...+. .||+.+.+
T Consensus 167 vd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~-~a~~~~~v 211 (220)
T PF02463_consen 167 VDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFE-DADKLIGV 211 (220)
T ss_dssp TTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHT-T-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 9999999999999999999977788999999977765 57887655
No 423
>KOG0063|consensus
Probab=99.68 E-value=7.9e-17 Score=146.27 Aligned_cols=173 Identities=20% Similarity=0.223 Sum_probs=126.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE--------ccCC---CCCCCCCHHH
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC--------PQYN---ALFDKLTVEE 93 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v--------~q~~---~l~~~ltv~e 93 (251)
.+|++.|++|.||-||||-+++++|-++|.-|..- ++-+ |..-++|. |+.+ .+-.... .+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~-------w~~il~~frgselq~yftk~le~~lk~~~k-pQ 168 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPD-------WQEILTYFRGSELQNYFTKILEDNLKAIIK-PQ 168 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcc-------hHHHhhhhhhHHHhhhhhhhccccccCcCC-hH
Confidence 57999999999999999999999999999877531 1111 11111111 1110 0000001 11
Q ss_pred HHH-HHHHhcC-----CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q psy7367 94 HMW-FYSQLKQ-----VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167 (251)
Q Consensus 94 ~l~-~~~~~~~-----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~ 167 (251)
++. ++....+ +.....++...++++.+.|...+++.+.+||||+-||.+||.+.+++++++++|||.+.||...
T Consensus 169 yvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQ 248 (592)
T KOG0063|consen 169 YVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQ 248 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHH
Confidence 221 1111110 1122223356778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367 168 RRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAA 206 (251)
Q Consensus 168 ~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~ 206 (251)
+-.-...++.+- ...-||+|.||+..+..++|-+-.+..
T Consensus 249 RLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 249 RLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred hhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 999999999985 588999999999999999999888863
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.67 E-value=6.3e-17 Score=122.69 Aligned_cols=77 Identities=16% Similarity=0.270 Sum_probs=64.0
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-HHhhcceEEEccCCCCCCCCCHH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-TTIRRSLGVCPQYNALFDKLTVE 92 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i~~v~q~~~l~~~ltv~ 92 (251)
+.+|++++|++++|++++|+||||||||||++++. +|++.++|.++.... ...++.++|+||+ +|+ .|++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhHH
Confidence 57999999999999999999999999999999986 899999999985432 3345567777777 554 4999
Q ss_pred HHHHHHH
Q psy7367 93 EHMWFYS 99 (251)
Q Consensus 93 e~l~~~~ 99 (251)
|||.+..
T Consensus 73 ~Ni~~~~ 79 (107)
T cd00820 73 LNIFLIT 79 (107)
T ss_pred hhceeee
Confidence 9998743
No 425
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.67 E-value=8.6e-17 Score=136.46 Aligned_cols=146 Identities=15% Similarity=0.103 Sum_probs=87.2
Q ss_pred EEEEEcCCCCcHHHHH-HHHhCCCCC-----------------CeeEEEEcceeCCCCh--HHhhcceEEEccCCC--CC
Q psy7367 29 ITSFLGHNGAGKTTTI-SMLMGMLPV-----------------SSGTAKIYNHDIRTDM--TTIRRSLGVCPQYNA--LF 86 (251)
Q Consensus 29 ~~~liG~NGaGKSTLl-k~l~Gl~~p-----------------~~G~i~~~g~~~~~~~--~~~~~~i~~v~q~~~--l~ 86 (251)
.++|+|+||||||||+ +.+.|..++ +.|.+.+...++.... ...+ .+|+.+... +.
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~--~~~~~~~~~~i~v 88 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR--DGYYIKGQCAIIM 88 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHhccCCEEEEE
Confidence 4899999999999999 688988654 4678888888874211 1111 122222211 01
Q ss_pred CCCC---HHHHHHHH----HHh----------cCCC--hHHHHHHHHHHHHHcCCCcccCCCCCcCChh--HHHHHHHHH
Q psy7367 87 DKLT---VEEHMWFY----SQL----------KQVP--KDLAQLEISNMIVDLGIPHKRTSLANTLSGG--MQRKLSVAM 145 (251)
Q Consensus 87 ~~lt---v~e~l~~~----~~~----------~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG--~kqrv~ia~ 145 (251)
.+.| -.+++... ... .+.. ..........+.+..++. .. ..+..||+ +++++.||+
T Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~--e~Sa~~~~~v~~~f~~ia~ 165 (215)
T PTZ00132 89 FDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQ-YY--DISAKSNYNFEKPFLWLAR 165 (215)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCE-EE--EEeCCCCCCHHHHHHHHHH
Confidence 1111 11111110 000 0111 111111122333444432 11 23444444 899999999
Q ss_pred HHccCCCEEEEeCCC-----CCCCHHHHHHHHHHHHhhh
Q psy7367 146 AFIGGSRTVILDEPT-----SGVDPYSRRSIWELLIKYK 179 (251)
Q Consensus 146 al~~~p~llllDEPt-----~gLD~~~~~~l~~~l~~l~ 179 (251)
+++.+|+++++|||| ++|||..++.+.+++++++
T Consensus 166 ~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 166 RLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999999999875
No 426
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.66 E-value=6.4e-16 Score=144.02 Aligned_cols=174 Identities=20% Similarity=0.229 Sum_probs=116.8
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---------ChHHhhcceEEEccCCC
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---------DMTTIRRSLGVCPQYNA 84 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---------~~~~~~~~i~~v~q~~~ 84 (251)
..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|+.-.. ....+++.|+++.+...
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 5689999 9999999999999999999999999999999999999996654321 12235678899975422
Q ss_pred CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCE-EEEeCC--CC
Q psy7367 85 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRT-VILDEP--TS 161 (251)
Q Consensus 85 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~l-lllDEP--t~ 161 (251)
++.+-+.-.. ..-.+.+.+..-|-+-+. -..+++ | .|+|+- ++ +.+.|| |+
T Consensus 225 -----~~~~r~~~~~---------~a~~iAEyfr~~g~~Vll--~~Dslt-----r--~A~A~r---Eisl~~ge~P~~~ 278 (438)
T PRK07721 225 -----PALMRIKGAY---------TATAIAEYFRDQGLNVML--MMDSVT-----R--VAMAQR---EIGLAVGEPPTTK 278 (438)
T ss_pred -----CHHHHHHHHH---------HHHHHHHHHHHCCCcEEE--EEeChH-----H--HHHHHH---HHHHhcCCCCccc
Confidence 1111111000 001122233223322111 011222 1 122210 00 123454 68
Q ss_pred CCCHHHHHHHHHHHHhhh---CCC-----eEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367 162 GVDPYSRRSIWELLIKYK---KGR-----TVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 216 (251)
Q Consensus 162 gLD~~~~~~l~~~l~~l~---~g~-----tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 216 (251)
|+||.....+.+++.++. .|. ||++.+||+++ .+||++..|.+|+++.+++..
T Consensus 279 G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 279 GYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHH
Confidence 999999999999999885 375 99999999995 789999999999999998754
No 427
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.64 E-value=8.3e-16 Score=152.58 Aligned_cols=147 Identities=21% Similarity=0.316 Sum_probs=103.6
Q ss_pred eeEEEe-CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceE-EEccCCCCCCCCCHHHHHHH
Q psy7367 20 LNVNFY-EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLG-VCPQYNALFDKLTVEEHMWF 97 (251)
Q Consensus 20 isl~i~-~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~v~q~~~l~~~ltv~e~l~~ 97 (251)
.++++. .+.++.|+|||++||||+||.++... +-.++| +||-... ..+++.+++.
T Consensus 319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~--------------------~maq~G~~vpa~~~--~~i~~~~~i~- 375 (782)
T PRK00409 319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAA--------------------LMAKSGLPIPANEP--SEIPVFKEIF- 375 (782)
T ss_pred ceeEECCCceEEEEECCCCCCcHHHHHHHHHHH--------------------HHHHhCCCcccCCC--ccccccceEE-
Confidence 355554 35789999999999999999996321 111223 4443311 0122223221
Q ss_pred HHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH-HHH
Q psy7367 98 YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLI 176 (251)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~-~l~ 176 (251)
..+|-.+...+.++++|+||+|++.|++++ .+|+++|+|||++|+||.....+.. ++.
T Consensus 376 --------------------~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile 434 (782)
T PRK00409 376 --------------------ADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILE 434 (782)
T ss_pred --------------------EecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHH
Confidence 012333444567899999999999999998 8999999999999999999988865 566
Q ss_pred hhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEe
Q psy7367 177 KYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQC 211 (251)
Q Consensus 177 ~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~ 211 (251)
.+. .|.++|++||+.+.....+++..++ ++.+.+
T Consensus 435 ~l~~~~~~vIitTH~~el~~~~~~~~~v~-~~~~~~ 469 (782)
T PRK00409 435 YLRKRGAKIIATTHYKELKALMYNREGVE-NASVEF 469 (782)
T ss_pred HHHHCCCEEEEECChHHHHHHHhcCCCeE-EEEEEE
Confidence 664 5899999999999988777766554 455554
No 428
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=1.1e-15 Score=156.52 Aligned_cols=87 Identities=17% Similarity=0.154 Sum_probs=79.6
Q ss_pred CCCcccCCCCCcCChhHHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeC
Q psy7367 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIG----------GSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTH 189 (251)
Q Consensus 121 ~l~~~~~~~~~~LSgG~kqrv~ia~al~~----------~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tH 189 (251)
++....++++..|||||++||+||+||+. +|++||+||||++||+.+...+++.|..+. .|++|+||||
T Consensus 939 ~~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH 1018 (1042)
T TIGR00618 939 DAYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISH 1018 (1042)
T ss_pred eCCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 34456677899999999999999999986 899999999999999999999999999986 5899999999
Q ss_pred CHHHHHhhcCEEEEeeCC
Q psy7367 190 YMDEADLLGDRIAIIAAG 207 (251)
Q Consensus 190 d~~~~~~~~d~i~~l~~G 207 (251)
++++...+||+|.|++.+
T Consensus 1019 ~~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1019 VPEFRERIPHRILVKKTN 1036 (1042)
T ss_pred cHHHHHhhCCEEEEEECC
Confidence 999999999999999754
No 429
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.62 E-value=2e-15 Score=129.21 Aligned_cols=138 Identities=16% Similarity=0.155 Sum_probs=90.2
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC-CCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG-MLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 92 (251)
+.+.+|++|++.+|++++|+||||+||||+++++++ .+.+..|..... +. -.++|..|- |..+...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~---------~~~~~~~~i---~~~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SS---------ATLSIFDSV---LTRMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-Cc---------eEEeccceE---EEEecCc
Confidence 568899999999999999999999999999999999 567788875542 11 123333322 1111112
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH-
Q psy7367 93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI- 171 (251)
Q Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l- 171 (251)
|++.-..+ .++ .|-++++-+..-+.+|.++|+|||.+|.|+.....+
T Consensus 85 d~~~~~~S-------------------------------tF~-~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~ 132 (222)
T cd03287 85 DSIQHGMS-------------------------------TFM-VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIA 132 (222)
T ss_pred cccccccc-------------------------------hHH-HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHH
Confidence 22211000 000 011222222223568999999999999987776664
Q ss_pred HHHHHhhh-C-CCeEEEEeCCHHHHHh
Q psy7367 172 WELLIKYK-K-GRTVILTTHYMDEADL 196 (251)
Q Consensus 172 ~~~l~~l~-~-g~tiii~tHd~~~~~~ 196 (251)
..++..+. . +.++|++||+.+...-
T Consensus 133 ~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 133 YATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 55666664 3 8899999999988653
No 430
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.62 E-value=1.5e-15 Score=146.42 Aligned_cols=77 Identities=22% Similarity=0.254 Sum_probs=71.5
Q ss_pred CcCChhHHHHHHHHHHHccC----CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367 131 NTLSGGMQRKLSVAMAFIGG----SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA 206 (251)
Q Consensus 131 ~~LSgG~kqrv~ia~al~~~----p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~ 206 (251)
..|||||+||++||++++.. |+++||||||+|||+..+..+.+.|+++.++.+||++||++..+. +||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEEEE
Confidence 37899999999999999985 699999999999999999999999999977899999999998885 8999999988
Q ss_pred CE
Q psy7367 207 GK 208 (251)
Q Consensus 207 G~ 208 (251)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 64
No 431
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.60 E-value=2.1e-15 Score=145.09 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=71.4
Q ss_pred CCCCcCChhHHHHHHHHHHHc----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHh
Q psy7367 128 SLANTLSGGMQRKLSVAMAFI----------GGSRTVILDEPT-SGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADL 196 (251)
Q Consensus 128 ~~~~~LSgG~kqrv~ia~al~----------~~p~llllDEPt-~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~ 196 (251)
.++..|||||+||++||+||+ .+|+++|||||| ++||+..+..+.+.|.++ ++.+||++||+.+.. .
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~iiiish~~~~~-~ 541 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KDTNVFVISHKDHDP-Q 541 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CCCeEEEEECchhch-h
Confidence 366899999999999999987 599999999998 789999999999999999 789999999997766 4
Q ss_pred hcCEEEEeeC-CEE
Q psy7367 197 LGDRIAIIAA-GKL 209 (251)
Q Consensus 197 ~~d~i~~l~~-G~i 209 (251)
.||++++|.+ |..
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 6899999986 543
No 432
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.57 E-value=2.9e-15 Score=129.02 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=87.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHH-HHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHh
Q psy7367 23 NFYEDQITSFLGHNGAGKTTT-ISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL 101 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTL-lk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~ 101 (251)
.+++|+++.|+|||||||||| +++++++.++.... .|+.. ..+..+.+.....+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~-------------------~yi~~------e~~~~~~~~~~~~~ 74 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSV-------------------SYVST------QLTTTEFIKQMMSL 74 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcE-------------------EEEeC------CCCHHHHHHHHHHh
Confidence 389999999999999999999 79999887643222 23321 12333433332222
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCC----CHHHHHHHHH
Q psy7367 102 KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI----GGSRTVILDEPTSGV----DPYSRRSIWE 173 (251)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~----~~p~llllDEPt~gL----D~~~~~~l~~ 173 (251)
+...+ ++... +.-...+-. ..+|+++.++..+++.+- .+|+++++||||+++ |+..++.+++
T Consensus 75 -g~~~~-------~~~~~-~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~ 144 (230)
T PRK08533 75 -GYDIN-------KKLIS-GKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMA 144 (230)
T ss_pred -CCchH-------HHhhc-CcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHH
Confidence 11110 11110 100011111 235666655555444433 369999999999999 8888899999
Q ss_pred HHHhhh-CCCeEEEEeCCHHHH--------HhhcCEEEEee
Q psy7367 174 LLIKYK-KGRTVILTTHYMDEA--------DLLGDRIAIIA 205 (251)
Q Consensus 174 ~l~~l~-~g~tiii~tHd~~~~--------~~~~d~i~~l~ 205 (251)
+++.++ .|.|+++ ||+.... +.+||-++.|+
T Consensus 145 ~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 145 FFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 999885 4776655 5554432 33455555554
No 433
>PRK10869 recombination and repair protein; Provisional
Probab=99.57 E-value=1.1e-14 Score=139.79 Aligned_cols=76 Identities=21% Similarity=0.294 Sum_probs=70.3
Q ss_pred cCChhHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367 132 TLSGGMQRKLSVAMAFIG----GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG 207 (251)
Q Consensus 132 ~LSgG~kqrv~ia~al~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G 207 (251)
.|||||+||++||++++. +|+++|||||++|||+.....+.+.|++++++.+||+|||++..+ .+||+.+.+.++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEecc
Confidence 479999999999999997 689999999999999999999999999997789999999999877 689999999874
Q ss_pred E
Q psy7367 208 K 208 (251)
Q Consensus 208 ~ 208 (251)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 3
No 434
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.56 E-value=7.2e-15 Score=127.83 Aligned_cols=177 Identities=18% Similarity=0.205 Sum_probs=108.3
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee--EEEEc--ceeCCCChHHhhcce---EEEccCCCCCCCC---C
Q psy7367 21 NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG--TAKIY--NHDIRTDMTTIRRSL---GVCPQYNALFDKL---T 90 (251)
Q Consensus 21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G--~i~~~--g~~~~~~~~~~~~~i---~~v~q~~~l~~~l---t 90 (251)
=+.+.+|+.++|+||+|+|||||++.|++......+ .+++. +.. .....++.+.+ -++.+-. ..+.. .
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er-~~ev~el~~~I~~~~v~~~~~-~~~~~~~~~ 87 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER-PEEVTDMQRSVKGEVIASTFD-EPPERHVQV 87 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC-CccHHHHHHHhccEEEEecCC-CCHHHHHHH
Confidence 357899999999999999999999999998876533 32322 111 11222333222 2222211 11100 0
Q ss_pred HHHHHHHHHHh--cCCC----hHHHHHHHHHHHHHcCCCcccCCCCCcCChhH--------HHHHHHHHHHccCCCEEEE
Q psy7367 91 VEEHMWFYSQL--KQVP----KDLAQLEISNMIVDLGIPHKRTSLANTLSGGM--------QRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 91 v~e~l~~~~~~--~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~--------kqrv~ia~al~~~p~llll 156 (251)
.+.-+.....+ .+.. -++. .+.....+.+... ....+|||+ +||+++||++..++++.+|
T Consensus 88 ~~~~~~~a~~~~~~G~~vll~iDei-~r~a~a~~ev~~~-----~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l 161 (249)
T cd01128 88 AEMVLEKAKRLVEHGKDVVILLDSI-TRLARAYNTVVPP-----SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII 161 (249)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECH-HHhhhhhhhcccc-----CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe
Confidence 11111111111 1100 0111 1222333333322 233469999 9999999999999999999
Q ss_pred eCCCCCCCHHHHHH-HHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367 157 DEPTSGVDPYSRRS-IWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210 (251)
Q Consensus 157 DEPt~gLD~~~~~~-l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~ 210 (251)
||+.+|+.+... ++ +.+++ .+.|.|+.||++.... ..|.|.+|+.|++.
T Consensus 162 --~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~-~~paI~vl~s~sr~ 212 (249)
T cd01128 162 --ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERR-IFPAIDILKSGTRK 212 (249)
T ss_pred --eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCC-CCCeEEEcCCCCcc
Confidence 999999644443 43 45555 4789999999999986 58999999999984
No 435
>PRK13695 putative NTPase; Provisional
Probab=99.55 E-value=2.3e-15 Score=123.91 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=65.0
Q ss_pred CCCCCcCChhHHHHHHHHHHHccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367 127 TSLANTLSGGMQRKLSVAMAFIGGSRTVILDE--PTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAII 204 (251)
Q Consensus 127 ~~~~~~LSgG~kqrv~ia~al~~~p~llllDE--Pt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l 204 (251)
.+....+|++++-++.+++..+.+|+++++|| |+.++|+..++.+.+++ ..+.++|+++|+ ..+..++|++..+
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~-~~~~~~~~~i~~~ 148 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHR-RSVHPFVQEIKSR 148 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECc-hhhHHHHHHHhcc
Confidence 34566899999999999999999999999999 55566655444433333 358999999999 4556789999999
Q ss_pred eCCEEEee
Q psy7367 205 AAGKLQCC 212 (251)
Q Consensus 205 ~~G~i~~~ 212 (251)
.+|++...
T Consensus 149 ~~~~i~~~ 156 (174)
T PRK13695 149 PGGRVYEL 156 (174)
T ss_pred CCcEEEEE
Confidence 99999765
No 436
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.55 E-value=1.4e-13 Score=117.54 Aligned_cols=140 Identities=18% Similarity=0.205 Sum_probs=91.9
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-SGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 92 (251)
+.+-+|++|+.++|++++|+||||+||||+++++++..-.. .|- .+.. -...++++ ..+|..+...
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vpa----~~~~i~~~---~~i~~~~~~~ 83 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVPA----KSMRLSLV---DRIFTRIGAR 83 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccCc----cccEeccc---cEEEEecCcc
Confidence 57889999999999999999999999999999999863221 111 1100 01112221 1223333333
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH
Q psy7367 93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172 (251)
Q Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~ 172 (251)
|++..... .++ -|-++++-+...+.+|+++|+|||++|.|+.....+.
T Consensus 84 d~~~~~~S-------------------------------tF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la 131 (218)
T cd03286 84 DDIMKGES-------------------------------TFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYAIA 131 (218)
T ss_pred cccccCcc-------------------------------hHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHH
Confidence 43322110 000 1222333333335789999999999999999999888
Q ss_pred HH-HHhhh-C-CCeEEEEeCCHHHHHhhc
Q psy7367 173 EL-LIKYK-K-GRTVILTTHYMDEADLLG 198 (251)
Q Consensus 173 ~~-l~~l~-~-g~tiii~tHd~~~~~~~~ 198 (251)
.. ++.+. . +.++|++||+++.+..++
T Consensus 132 ~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 132 HAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 87 55664 3 899999999999998876
No 437
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.55 E-value=2.9e-14 Score=132.30 Aligned_cols=164 Identities=15% Similarity=0.148 Sum_probs=119.1
Q ss_pred EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccC
Q psy7367 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQY 82 (251)
Q Consensus 3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~ 82 (251)
.+.++..|..+..+++.+ |.+.+|+.++|+|+||+|||||+++|++..+|+.|.|.+.|+..
T Consensus 133 r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg----------------- 194 (432)
T PRK06793 133 REEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG----------------- 194 (432)
T ss_pred eechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc-----------------
Confidence 345666675456788885 99999999999999999999999999999999988776655431
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc-------cCCCEEE
Q psy7367 83 NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI-------GGSRTVI 155 (251)
Q Consensus 83 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~-------~~p~lll 155 (251)
.+|.|++.......+..+ ...=....+.|.|+|+|++.+.+.+ .++-+++
T Consensus 195 ------~ev~e~~~~~l~~~gl~~-----------------tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLli 251 (432)
T PRK06793 195 ------REVKDFIRKELGEEGMRK-----------------SVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLM 251 (432)
T ss_pred ------ccHHHHHHHHhhhcccce-----------------eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 356665543221111110 0011346789999999999999887 8999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
+|+||...|+. +++...+.+.. .|.+..+.||-.. +++|......|.|....
T Consensus 252 lDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~----L~ERag~~~~GSiT~~~ 304 (432)
T PRK06793 252 MDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKK----LLERSGKTQKGSITGIY 304 (432)
T ss_pred ecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchh----HHHHhccCCCcceEEEE
Confidence 99999999996 56666666664 5888888888543 44444446788886544
No 438
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.55 E-value=2.6e-14 Score=120.66 Aligned_cols=66 Identities=30% Similarity=0.398 Sum_probs=54.9
Q ss_pred CCCcCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHH
Q psy7367 129 LANTLSGGMQRKLSVAMAFIGGS---RTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEA 194 (251)
Q Consensus 129 ~~~~LSgG~kqrv~ia~al~~~p---~llllDEPt~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~ 194 (251)
++..+|.|+||.+.++.++...+ .++++|||-++|+|..++.++++|.+..+ +.-||++||++..+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 45677999999999888887766 89999999999999999999999988865 88999999997654
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.54 E-value=4.6e-14 Score=116.62 Aligned_cols=143 Identities=18% Similarity=0.085 Sum_probs=99.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-CCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChH
Q psy7367 29 ITSFLGHNGAGKTTTISMLMG-MLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD 107 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~ 107 (251)
++.|.||.|+|||||.--++- ..+. | ..+.|+.= ..|..+.+.....+ +....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--------g-----------~~v~~~s~------e~~~~~~~~~~~~~-g~~~~ 54 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--------G-----------EPGLYVTL------EESPEELIENAESL-GWDLE 54 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--------C-----------CcEEEEEC------CCCHHHHHHHHHHc-CCChH
Confidence 367899999999998765432 2221 1 12333321 12444444332222 32211
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCcCChhHHH------HHHHHHHHccCCCEEEEeCCCCCCC---HHHHHHHHHHHHhh
Q psy7367 108 LAQLEISNMIVDLGIPHKRTSLANTLSGGMQR------KLSVAMAFIGGSRTVILDEPTSGVD---PYSRRSIWELLIKY 178 (251)
Q Consensus 108 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kq------rv~ia~al~~~p~llllDEPt~gLD---~~~~~~l~~~l~~l 178 (251)
.+...+.....+..+..+|+|++| ....+.+...+|+++++|||++.+| ...+..+.+++..+
T Consensus 55 --------~l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l 126 (187)
T cd01124 55 --------RLEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFAL 126 (187)
T ss_pred --------HHHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHH
Confidence 133445556677888999999998 5555556678999999999999999 88888888888888
Q ss_pred h-CCCeEEEEeCCHHH---------HHhhcCEEEEee
Q psy7367 179 K-KGRTVILTTHYMDE---------ADLLGDRIAIIA 205 (251)
Q Consensus 179 ~-~g~tiii~tHd~~~---------~~~~~d~i~~l~ 205 (251)
+ .|.|+|+++|+... +..+||.++.|+
T Consensus 127 ~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 127 KRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 5 59999999998775 678899999887
No 440
>PRK03918 chromosome segregation protein; Provisional
Probab=99.51 E-value=4.8e-14 Score=142.22 Aligned_cols=79 Identities=27% Similarity=0.393 Sum_probs=69.8
Q ss_pred cCCCCCcCChhHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhc
Q psy7367 126 RTSLANTLSGGMQR------KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLG 198 (251)
Q Consensus 126 ~~~~~~~LSgG~kq------rv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~ 198 (251)
.++++..|||||+| |++||++++.+|+++||||||++||+..+..+.++|..+. .+.+||++||+++. ..+|
T Consensus 782 ~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~-~~~~ 860 (880)
T PRK03918 782 KERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEEL-KDAA 860 (880)
T ss_pred CcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHhC
Confidence 34678999999999 5556668889999999999999999999999999999875 47899999999875 4689
Q ss_pred CEEEEee
Q psy7367 199 DRIAIIA 205 (251)
Q Consensus 199 d~i~~l~ 205 (251)
|++++|.
T Consensus 861 d~~~~l~ 867 (880)
T PRK03918 861 DYVIRVS 867 (880)
T ss_pred CeEEEEE
Confidence 9999998
No 441
>PRK01156 chromosome segregation protein; Provisional
Probab=99.50 E-value=1.3e-13 Score=139.55 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=77.0
Q ss_pred HHHHHHHHcCCCc----------------ccCCCCCcCChhHHHHHHH------HHHHccCCCEEEEeCCCCCCCHHHHH
Q psy7367 112 EISNMIVDLGIPH----------------KRTSLANTLSGGMQRKLSV------AMAFIGGSRTVILDEPTSGVDPYSRR 169 (251)
Q Consensus 112 ~~~~~l~~~~l~~----------------~~~~~~~~LSgG~kqrv~i------a~al~~~p~llllDEPt~gLD~~~~~ 169 (251)
.+.+++..|++.. ....++..|||||++|++| |++++.+|++++|||||++||+..+.
T Consensus 765 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~ 844 (895)
T PRK01156 765 LTRKYLFEFNLDFDDIDVDQDFNITVSRGGMVEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRT 844 (895)
T ss_pred HHHHHHHHhCCCccceeecCCeeEEEEeCCccCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHH
Confidence 4556777777641 1224688999999999975 58999999999999999999999999
Q ss_pred HHHHHHHhh-hC--C-CeEEEEeCCHHHHHhhcCEEEEee
Q psy7367 170 SIWELLIKY-KK--G-RTVILTTHYMDEADLLGDRIAIIA 205 (251)
Q Consensus 170 ~l~~~l~~l-~~--g-~tiii~tHd~~~~~~~~d~i~~l~ 205 (251)
.+.+++... +. + .+||++|||.+.+ .+||+++.+.
T Consensus 845 ~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~d~ii~~~ 883 (895)
T PRK01156 845 NLKDIIEYSLKDSSDIPQVIMISHHRELL-SVADVAYEVK 883 (895)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECchHHH-HhcCeEEEEE
Confidence 999999864 33 3 4899999999987 5899999998
No 442
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=1e-13 Score=144.93 Aligned_cols=72 Identities=26% Similarity=0.381 Sum_probs=65.5
Q ss_pred CCCCcCChhHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh------CCCeEEEEeCCHHHHH
Q psy7367 128 SLANTLSGGMQR------KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK------KGRTVILTTHYMDEAD 195 (251)
Q Consensus 128 ~~~~~LSgG~kq------rv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~------~g~tiii~tHd~~~~~ 195 (251)
..++.||+|||| |++||+|++.+|++|+|||||++||+.+...+.+.|..+. .|.+||+||||++++.
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 355799999999 9999999999999999999999999999999999887761 3789999999999999
Q ss_pred hhcC
Q psy7367 196 LLGD 199 (251)
Q Consensus 196 ~~~d 199 (251)
.+|.
T Consensus 1275 ~~~~ 1278 (1311)
T TIGR00606 1275 LLGR 1278 (1311)
T ss_pred HHhh
Confidence 9874
No 443
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.49 E-value=1.1e-13 Score=141.89 Aligned_cols=81 Identities=21% Similarity=0.218 Sum_probs=75.5
Q ss_pred cCCCCCcCChhHHHHHHHHHHHcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHh
Q psy7367 126 RTSLANTLSGGMQRKLSVAMAFIG--------GSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADL 196 (251)
Q Consensus 126 ~~~~~~~LSgG~kqrv~ia~al~~--------~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~ 196 (251)
..+++.+|||||+++++||+||+. +|++||+||||++||+.+...+++.|..++ .|++|+||||..+...+
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence 357899999999999999999996 899999999999999999999999999996 59999999999999999
Q ss_pred hcCEEEEeeC
Q psy7367 197 LGDRIAIIAA 206 (251)
Q Consensus 197 ~~d~i~~l~~ 206 (251)
+..+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 9999988875
No 444
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.46 E-value=1e-13 Score=142.64 Aligned_cols=79 Identities=23% Similarity=0.291 Sum_probs=70.9
Q ss_pred cCCCCCcCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEE
Q psy7367 126 RTSLANTLSGGMQRKLSVAMAFI----GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRI 201 (251)
Q Consensus 126 ~~~~~~~LSgG~kqrv~ia~al~----~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i 201 (251)
.+.++..|||||+||++||++++ .+|+++||||||++||+.++..+.++|..+.++.+||||||++..+ .+||++
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~-~~~d~~ 1161 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTM-EVADQL 1161 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHH-HHhhhH
Confidence 45688999999999999999984 6789999999999999999999999999987678899999999987 579998
Q ss_pred EEee
Q psy7367 202 AIIA 205 (251)
Q Consensus 202 ~~l~ 205 (251)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 7654
No 445
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.46 E-value=1.8e-12 Score=129.85 Aligned_cols=68 Identities=24% Similarity=0.276 Sum_probs=60.6
Q ss_pred ccCCCEEEEeCCCCCC-CHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHH---------hhcCEEEEeeCCEEEeecCH
Q psy7367 148 IGGSRTVILDEPTSGV-DPYSRRSIWELLIKYK-KGRTVILTTHYMDEAD---------LLGDRIAIIAAGKLQCCGSS 215 (251)
Q Consensus 148 ~~~p~llllDEPt~gL-D~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~---------~~~d~i~~l~~G~i~~~g~~ 215 (251)
..+|+++++|||+.+| |+..++.+.+.++..+ .|.+++++||+++.+. ..|++.++|.+|++...+..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 7999999999999985 5899999999999986 57999999999998665543
No 446
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.46 E-value=1.4e-12 Score=126.50 Aligned_cols=132 Identities=26% Similarity=0.430 Sum_probs=101.3
Q ss_pred CCCCHHHHHHHHHHhcCCChH---HHHHHHHH------HHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHccC--CCEE
Q psy7367 87 DKLTVEEHMWFYSQLKQVPKD---LAQLEISN------MIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGG--SRTV 154 (251)
Q Consensus 87 ~~ltv~e~l~~~~~~~~~~~~---~~~~~~~~------~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~~~--p~ll 154 (251)
..|++.+-+.|+..+. .... -....+.+ .|-.+||..+ ++|...+|||||.||+.||..+-+. -=++
T Consensus 427 ~~msi~~~~~f~~~l~-l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlY 505 (935)
T COG0178 427 SEMSIADALEFFENLK-LSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY 505 (935)
T ss_pred hhccHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEE
Confidence 3456666666665543 1111 11112222 3444578753 5789999999999999999998654 3479
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHHh
Q psy7367 155 ILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLKN 220 (251)
Q Consensus 155 llDEPt~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~~ 220 (251)
+||||+.||-+..-+++++.|+.++. |-|+|+|.||.+.+. .||+|+-| +.|+|++.|+++++..
T Consensus 506 VLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 506 VLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIR-AADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHh-hcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 99999999999999999999999986 999999999988776 69999998 5689999999987754
No 447
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.45 E-value=4.6e-13 Score=107.00 Aligned_cols=130 Identities=21% Similarity=0.191 Sum_probs=81.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHH
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDL 108 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 108 (251)
++.|.||||+||||+++.+++...+..|.+.+...+..... ..++... ..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~---------------------~~~~~~~---~~------ 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE---------------------LTERLIG---ES------ 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH---------------------HHHHHhh---hh------
Confidence 47899999999999999999988776666655443321110 0010000 00
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCC----------CCCHHHHHHHHHHHHhh
Q psy7367 109 AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS----------GVDPYSRRSIWELLIKY 178 (251)
Q Consensus 109 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~----------gLD~~~~~~l~~~l~~l 178 (251)
..... +............+..+.++.+.+++...+|+++++|||++ +.|....+.+.+++...
T Consensus 51 ----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 123 (165)
T cd01120 51 ----LKGAL---DNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA 123 (165)
T ss_pred ----hcccc---ccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 00000 00111122233445556667888999999999999999994 45555567777776666
Q ss_pred hC-CCeEEEEeCCHHHHH
Q psy7367 179 KK-GRTVILTTHYMDEAD 195 (251)
Q Consensus 179 ~~-g~tiii~tHd~~~~~ 195 (251)
++ +.|+|+++|......
T Consensus 124 ~~~~~~vv~~~~~~~~~~ 141 (165)
T cd01120 124 RKGGVTVIFTLQVPSGDK 141 (165)
T ss_pred hcCCceEEEEEecCCccc
Confidence 54 899999999875543
No 448
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.42 E-value=3.3e-13 Score=121.04 Aligned_cols=142 Identities=14% Similarity=0.144 Sum_probs=96.2
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHH
Q psy7367 20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS 99 (251)
Q Consensus 20 isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~ 99 (251)
+++.+..|+.++|+||+|||||||+++|+++++|..|.+.+.... ..... .+..+.++.+... .
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~-El~~~-~~~~~~l~~~~~~--~------------ 200 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTR-EIFLP-HPNYVHLFYSKGG--Q------------ 200 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCcc-ccCCC-CCCEEEEEecCCC--C------------
Confidence 457788999999999999999999999999999988888774211 00000 0112222221100 0
Q ss_pred HhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh
Q psy7367 100 QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179 (251)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~ 179 (251)
+ ....| ..-.++.+|-++|+++++|||.+ .+++++++...
T Consensus 201 ---~--------------------------~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~ 240 (308)
T TIGR02788 201 ---G--------------------------LAKVT----PKDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVN 240 (308)
T ss_pred ---C--------------------------cCccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh
Confidence 0 00000 11245567888999999999996 34567777776
Q ss_pred CCC-eEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 180 KGR-TVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 180 ~g~-tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
.|. +++.++|..+. ....+|+..|..|++...|.+.+.
T Consensus 241 ~g~~~~i~T~Ha~~~-~~~~~Rl~~l~~~~~~~~g~~~~~ 279 (308)
T TIGR02788 241 TGHPGSITTLHAGSP-EEAFEQLALMVKSSQAGLGLDFAY 279 (308)
T ss_pred cCCCeEEEEEeCCCH-HHHHHHHHHHhhccccccCCCHHH
Confidence 654 57999999884 456899999999999887766543
No 449
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.40 E-value=3.2e-12 Score=105.33 Aligned_cols=177 Identities=18% Similarity=0.230 Sum_probs=107.2
Q ss_pred Ccceeeeee--EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CCeeEEEEcce-eCC-CChHHhhcceEEEccCC--C
Q psy7367 13 GKLAVNGLN--VNFYEDQITSFLGHNGAGKTTTISMLMGMLP--VSSGTAKIYNH-DIR-TDMTTIRRSLGVCPQYN--A 84 (251)
Q Consensus 13 ~~~il~~is--l~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~--p~~G~i~~~g~-~~~-~~~~~~~~~i~~v~q~~--~ 84 (251)
+.++++++. |++++ -|+.|+|.||+||||||..|+-... +..|.=.+.+. +.. ....+. -++...+.-+ .
T Consensus 22 slPa~r~l~~~LeF~a-pIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~-~k~~~~~k~~~g~ 99 (233)
T COG3910 22 SLPAFRHLEERLEFRA-PITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDY-AKLHKRKKPPIGF 99 (233)
T ss_pred cchHHHhhhhhccccC-ceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHh-HHHhhcCCCCcce
Confidence 345666654 66666 4999999999999999999875432 22222112111 110 000000 0011111111 1
Q ss_pred CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy7367 85 LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164 (251)
Q Consensus 85 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD 164 (251)
++..-|.+....+ ++++.... ..-.+.....|.||-=.--+.+.+ ...-++|||||-++|.
T Consensus 100 FlRAEs~yn~as~---------------~De~~~e~---~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LS 160 (233)
T COG3910 100 FLRAESFYNVASY---------------LDEADGEA---NYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALS 160 (233)
T ss_pred EEehhHHHHHHHH---------------HHhhhhhc---ccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCC
Confidence 1111122111110 11111111 133455778999998766666664 5668999999999999
Q ss_pred HHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE
Q psy7367 165 PYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210 (251)
Q Consensus 165 ~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~ 210 (251)
|.-+-.++..|+++. .|.-+||+||.+-.+.-=--+|+-++.+.+.
T Consensus 161 p~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~ 207 (233)
T COG3910 161 PSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGIE 207 (233)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCcc
Confidence 999999999999996 4999999999987766545778888877653
No 450
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.38 E-value=1.1e-12 Score=135.34 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=70.7
Q ss_pred CCCCCcCChhHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEE
Q psy7367 127 TSLANTLSGGMQRKLSVAMAFIG----GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIA 202 (251)
Q Consensus 127 ~~~~~~LSgG~kqrv~ia~al~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~ 202 (251)
.+++..||||||++++||++|+. +|+++|||||+++||+.++..+.++|.++..+..+|++||+...+ .+||+++
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~-~~~d~~~ 1147 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI-EYADRAI 1147 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH-HhcceeE
Confidence 45677999999999999999984 789999999999999999999999999987778899999998765 6899998
Q ss_pred EeeC
Q psy7367 203 IIAA 206 (251)
Q Consensus 203 ~l~~ 206 (251)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 7753
No 451
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.38 E-value=1.6e-12 Score=122.31 Aligned_cols=170 Identities=16% Similarity=0.247 Sum_probs=113.0
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHH
Q psy7367 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHM 95 (251)
Q Consensus 16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l 95 (251)
++++.++.+++|.+++++|||||||||++..|++.+.+..|. .+|+++.+++ ...++.|++
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~----------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA----------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC----------------CeEEEEeCCc---cchhHHHHH
Confidence 566777788899999999999999999999999877655543 2578898886 347899999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHH-HHHHHHHHccCC-----CEEEEeCCCCCCCHHHHH
Q psy7367 96 WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQR-KLSVAMAFIGGS-----RTVILDEPTSGVDPYSRR 169 (251)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kq-rv~ia~al~~~p-----~llllDEPt~gLD~~~~~ 169 (251)
.+++...+.+........+......++.+.....+.+.+.+++- .+.-..+++.++ .+|+||.++.+ .
T Consensus 306 r~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~------~ 379 (484)
T PRK06995 306 RIYGKILGVPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG------D 379 (484)
T ss_pred HHHHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH------H
Confidence 99988876654333334445556667766555567775444432 223344444444 68999999887 3
Q ss_pred HHHHHHHhhhC-CCeEEEEeCCH---------HHHHhhcCEEEEeeCCEEE
Q psy7367 170 SIWELLIKYKK-GRTVILTTHYM---------DEADLLGDRIAIIAAGKLQ 210 (251)
Q Consensus 170 ~l~~~l~~l~~-g~tiii~tHd~---------~~~~~~~d~i~~l~~G~i~ 210 (251)
.+.+.++.++. +.+-+|.|+-- +.+.+..=-|.++..|+-+
T Consensus 380 ~l~~i~~~f~~~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 380 TLNEVVQAYRGPGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred HHHHHHHHhccCCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCC
Confidence 35555555543 55555556521 3333333457777777644
No 452
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.37 E-value=2.1e-13 Score=126.91 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=53.8
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEEEcceeCCCChHHhhcceEEEccCC
Q psy7367 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG-TAKIYNHDIRTDMTTIRRSLGVCPQYN 83 (251)
Q Consensus 15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~v~q~~ 83 (251)
++|++||+++++||+++|+|||||||||||+ +|+..|++| +|.++|+++...........-+|||+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLDEIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999999999999999 788888888 799999998642221111111888864
No 453
>PRK02224 chromosome segregation protein; Provisional
Probab=99.29 E-value=7.9e-12 Score=126.33 Aligned_cols=78 Identities=21% Similarity=0.349 Sum_probs=68.1
Q ss_pred CCCcCChhHHH------HHHHHHHHccC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHhhhC-C-CeEEEEeCCHHHH
Q psy7367 129 LANTLSGGMQR------KLSVAMAFIGG-----S-RTVILDEPTSGVDPYSRRSIWELLIKYKK-G-RTVILTTHYMDEA 194 (251)
Q Consensus 129 ~~~~LSgG~kq------rv~ia~al~~~-----p-~llllDEPt~gLD~~~~~~l~~~l~~l~~-g-~tiii~tHd~~~~ 194 (251)
++..||||||+ |+++|++++.. | +++||||||++||+..+..+.++|..+.. | .+||++|||.+.+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 46799999999 89999998863 2 67999999999999999999999999863 5 4899999999998
Q ss_pred HhhcCEEEEeeCC
Q psy7367 195 DLLGDRIAIIAAG 207 (251)
Q Consensus 195 ~~~~d~i~~l~~G 207 (251)
. .||+++.|...
T Consensus 858 ~-~ad~~~~~~~~ 869 (880)
T PRK02224 858 G-AADDLVRVEKD 869 (880)
T ss_pred H-hcCeeEEeecC
Confidence 5 69999999744
No 454
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.27 E-value=7.9e-14 Score=132.21 Aligned_cols=160 Identities=19% Similarity=0.249 Sum_probs=106.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHH--hCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHH
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISML--MGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ 100 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l--~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~ 100 (251)
-+++|.++.|.||+|||||||..-+ .|+.++.+.-+++...+-.....+..+.+||-+++..-- +++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~------g~l~~--- 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDE------GKLFI--- 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc------CceEE---
Confidence 5899999999999999999998866 566655555666655432111222234556555432100 00000
Q ss_pred hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHH--HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367 101 LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVA--MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178 (251)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia--~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l 178 (251)
+ ..... .....+++.+++.+..++.+..+|+|++|||.|+ .+|...|+.. +..++.++++++.+
T Consensus 88 ~-~~~~~---~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L 153 (484)
T TIGR02655 88 L-DASPD---PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARL 153 (484)
T ss_pred E-ecCch---hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHH
Confidence 0 00000 0111245566777777888899999999999999 6666665544 57788899999888
Q ss_pred h-CCCeEEEEeCCHHH---------HHhhcCEEEEee
Q psy7367 179 K-KGRTVILTTHYMDE---------ADLLGDRIAIIA 205 (251)
Q Consensus 179 ~-~g~tiii~tHd~~~---------~~~~~d~i~~l~ 205 (251)
+ .|+|+|++||+.+. .+.+||.|+.|+
T Consensus 154 ~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 154 KQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 6 59999999998764 266899999987
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.27 E-value=5.5e-11 Score=102.32 Aligned_cols=160 Identities=13% Similarity=0.059 Sum_probs=93.0
Q ss_pred ceeeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHh-CCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367 15 LAVNGL-NVNFYEDQITSFLGHNGAGKTTTISMLM-GMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92 (251)
Q Consensus 15 ~il~~i-sl~i~~Ge~~~liG~NGaGKSTLlk~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 92 (251)
.-|+.+ .=-+++|.++.|.|++|||||||...++ +..+ ..+.+. |+..+ -+..
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~------------------y~~~e------~~~~ 66 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVY------------------VITTE------NTSK 66 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEE------------------EEEcC------CCHH
Confidence 344443 3368999999999999999999998875 2222 222333 33221 1222
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc--CCCEEEEeCCCCC---CCHHH
Q psy7367 93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG--GSRTVILDEPTSG---VDPYS 167 (251)
Q Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~--~p~llllDEPt~g---LD~~~ 167 (251)
+.+.-...+ +....+. .....+..+.+ .-......|.++.+.+..+..++. +|+++++||||+. .|...
T Consensus 67 ~~~~~~~~~-g~~~~~~--~~~g~l~i~~~---~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~ 140 (234)
T PRK06067 67 SYLKQMESV-KIDISDF--FLWGYLRIFPL---NTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDD 140 (234)
T ss_pred HHHHHHHHC-CCChhHH--HhCCCceEEec---cccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHH
Confidence 222111111 1111000 00000001111 111234557788999999999987 9999999999964 55555
Q ss_pred HHHHHHHHHhhh-CCCeEEEEeCCHHH-------HHhhcCEEEEee
Q psy7367 168 RRSIWELLIKYK-KGRTVILTTHYMDE-------ADLLGDRIAIIA 205 (251)
Q Consensus 168 ~~~l~~~l~~l~-~g~tiii~tHd~~~-------~~~~~d~i~~l~ 205 (251)
...+++.++.++ +|.|+++++|+... +..++|-++.|+
T Consensus 141 ~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 141 ILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 556666666654 58999999998654 455566666665
No 456
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.24 E-value=2.1e-12 Score=110.66 Aligned_cols=165 Identities=17% Similarity=0.176 Sum_probs=85.9
Q ss_pred eeeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHh--CCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367 16 AVNGL-NVNFYEDQITSFLGHNGAGKTTTISMLM--GMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92 (251)
Q Consensus 16 il~~i-sl~i~~Ge~~~liG~NGaGKSTLlk~l~--Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 92 (251)
-|+.+ .=-+++|+++.|.||+|||||||...++ ++ .+..+-+++.............+.+++.+|+......+.+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~ 86 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVII 86 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEE
Confidence 34443 3468999999999999999999988654 44 44555667765432111112234566666643222222222
Q ss_pred HHHHH----HHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q psy7367 93 EHMWF----YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168 (251)
Q Consensus 93 e~l~~----~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~ 168 (251)
|.+.. .........++...++.++++..+... .++++-.+..+++|||. ..+
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------------~~vvIDsl~~l~~~~~~-----~~r 142 (229)
T TIGR03881 87 DALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGH-------------------ARLVIDSMSAFWLDKPA-----MAR 142 (229)
T ss_pred EccccccccccccccCCHHHHHHHHHHHHHhhccCc-------------------eEEEecCchhhhccChH-----HHH
Confidence 21100 000011223333334444444333211 23344444445555553 223
Q ss_pred HHHHHHHHhhh-CCCeEEEEeCCHH--------HHHhhcCEEEEee
Q psy7367 169 RSIWELLIKYK-KGRTVILTTHYMD--------EADLLGDRIAIIA 205 (251)
Q Consensus 169 ~~l~~~l~~l~-~g~tiii~tHd~~--------~~~~~~d~i~~l~ 205 (251)
+.+..+.+.++ .|+|+|+++|... .++.+||-|+.|+
T Consensus 143 ~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 143 KYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred HHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 33344444455 4999999999643 3556788888887
No 457
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.24 E-value=7.1e-12 Score=105.06 Aligned_cols=114 Identities=18% Similarity=0.120 Sum_probs=71.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHH
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDL 108 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 108 (251)
++||.||||||||||.++|++++ ..|.+.+.+ ++.. +..++..+........+..+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~------------------~D~~-~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIIS------------------QDSY-YKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEE------------------eccc-ccccccccHHHhccCCCCCCCcc
Confidence 58999999999999999999987 233343332 2211 11122222221111111111111
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q psy7367 109 AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166 (251)
Q Consensus 109 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~ 166 (251)
..+.+.+.+..+......+.+..++|.|++++..+ .+.+|+++|+|+|+.+.++.
T Consensus 60 ~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 60 DFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred cHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 12344556666666666777888999999877655 57889999999999999873
No 458
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.20 E-value=7.1e-11 Score=99.41 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=74.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChH
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGMLPV-SSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD 107 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~ 107 (251)
++.|.||+||||||+++.|.+.+.+ ..|.|.....++.... ....+++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~---~~~~~~i~q~~------------------------ 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH---ESKRSLINQRE------------------------ 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc---cCccceeeecc------------------------
Confidence 7899999999999999998887764 3567665444331100 00111111110
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEE
Q psy7367 108 LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILT 187 (251)
Q Consensus 108 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~ 187 (251)
++.. ...++ -+++++|..+|+++++|||. |++.... .++....|..++.+
T Consensus 56 ------------vg~~------~~~~~------~~i~~aLr~~pd~ii~gEir---d~e~~~~---~l~~a~~G~~v~~t 105 (198)
T cd01131 56 ------------VGLD------TLSFE------NALKAALRQDPDVILVGEMR---DLETIRL---ALTAAETGHLVMST 105 (198)
T ss_pred ------------cCCC------ccCHH------HHHHHHhcCCcCEEEEcCCC---CHHHHHH---HHHHHHcCCEEEEE
Confidence 0000 00111 14789999999999999996 6554333 33333458899999
Q ss_pred eCCHHHHHhhcCEEEEee
Q psy7367 188 THYMDEADLLGDRIAIIA 205 (251)
Q Consensus 188 tHd~~~~~~~~d~i~~l~ 205 (251)
+|..+... ..+|++.+.
T Consensus 106 ~Ha~~~~~-~~~Rl~~l~ 122 (198)
T cd01131 106 LHTNSAAK-TIDRIIDVF 122 (198)
T ss_pred ecCCcHHH-HHhHHHhhc
Confidence 99988764 578887664
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.19 E-value=1.7e-09 Score=82.95 Aligned_cols=117 Identities=28% Similarity=0.242 Sum_probs=80.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCe-eEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGMLPVSS-GTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV 104 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~ 104 (251)
++..+.|+||+|+||||+++.++..+.... +-++++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 367899999999999999999999887654 4444444332111000000
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH------HHhh
Q psy7367 105 PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL------LIKY 178 (251)
Q Consensus 105 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~------l~~l 178 (251)
...........++.+..+..+++|--.+|.++++||+..-.+.......... ....
T Consensus 51 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (148)
T smart00382 51 ------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLK 112 (148)
T ss_pred ------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHH
Confidence 1112223456777778888888888888999999999999999988877651 2222
Q ss_pred -hCCCeEEEEeCC
Q psy7367 179 -KKGRTVILTTHY 190 (251)
Q Consensus 179 -~~g~tiii~tHd 190 (251)
..+..+|.++|.
T Consensus 113 ~~~~~~~i~~~~~ 125 (148)
T smart00382 113 SEKNLTVILTTND 125 (148)
T ss_pred hcCCCEEEEEeCC
Confidence 347889999984
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.16 E-value=4.3e-11 Score=99.68 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=63.2
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCC--CCCCCCCHHH
Q psy7367 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYN--ALFDKLTVEE 93 (251)
Q Consensus 16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~--~l~~~ltv~e 93 (251)
...-+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-... ..+..+++++|.. ..++..++.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL--PHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC--CCCCEEEEEEecCCCCCCCccCHHH
Confidence 44556778999999999999999999999999999999999999976432111 1123466666543 4466789999
Q ss_pred HHHHHHHh
Q psy7367 94 HMWFYSQL 101 (251)
Q Consensus 94 ~l~~~~~~ 101 (251)
.+....+.
T Consensus 92 ~l~~~lR~ 99 (186)
T cd01130 92 LLRSALRM 99 (186)
T ss_pred HHHHHhcc
Confidence 88876654
No 461
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=99.14 E-value=5.5e-11 Score=110.58 Aligned_cols=89 Identities=13% Similarity=0.194 Sum_probs=69.9
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee---EEEEcceeCCCCh-H------HhhcceEEEccC
Q psy7367 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG---TAKIYNHDIRTDM-T------TIRRSLGVCPQY 82 (251)
Q Consensus 13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G---~i~~~g~~~~~~~-~------~~~~~i~~v~q~ 82 (251)
+..+++++ |++.+|++++|+|+||||||||+++|+|+.+|+.+ .|-.++.++.... . ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 35799999 99999999999999999999999999999998864 3333443432111 1 124579999999
Q ss_pred CCCCCCCCHHHHHHHHHHhc
Q psy7367 83 NALFDKLTVEEHMWFYSQLK 102 (251)
Q Consensus 83 ~~l~~~ltv~e~l~~~~~~~ 102 (251)
...+..+++.+++.+.+.++
T Consensus 221 ~s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYY 240 (434)
T ss_pred CChhhhHHHHHHHHHHHHHh
Confidence 99999999999998776654
No 462
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=99.13 E-value=1.3e-10 Score=108.24 Aligned_cols=83 Identities=13% Similarity=0.265 Sum_probs=67.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcc---eeCCCC----h-HHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN---HDIRTD----M-TTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g---~~~~~~----~-~~~ 72 (251)
++.+++++.|..+..+++.++ +|.+|++++|+||||||||||+++|+++.+|+.|.|.+.| +++... . ...
T Consensus 140 ~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r 218 (450)
T PRK06002 140 MTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNL 218 (450)
T ss_pred eEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhh
Confidence 356789999966678999986 9999999999999999999999999999999999998864 444311 1 122
Q ss_pred hcceEEEccCCC
Q psy7367 73 RRSLGVCPQYNA 84 (251)
Q Consensus 73 ~~~i~~v~q~~~ 84 (251)
++.|+|++|...
T Consensus 219 ~rtI~vV~qsd~ 230 (450)
T PRK06002 219 KKAVAVVATSDE 230 (450)
T ss_pred CCeEEEEEcCCC
Confidence 468999999653
No 463
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.12 E-value=1.5e-10 Score=106.18 Aligned_cols=63 Identities=29% Similarity=0.371 Sum_probs=58.2
Q ss_pred CcCChhHHHHHHHHHHHcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHH
Q psy7367 131 NTLSGGMQRKLSVAMAFIG---------GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEAD 195 (251)
Q Consensus 131 ~~LSgG~kqrv~ia~al~~---------~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~ 195 (251)
..+|.||+|+++||.+|+. +|+++|||||+++||+..++.+++.|.+. |..|+++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4789999999999999999 99999999999999999999999999765 679999999987765
No 464
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.09 E-value=5.7e-10 Score=96.38 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=38.8
Q ss_pred HHccCCCEEEEeCCCCC------CCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHH
Q psy7367 146 AFIGGSRTVILDEPTSG------VDPYSRRSIWELLIKYK-K-GRTVILTTHYMD 192 (251)
Q Consensus 146 al~~~p~llllDEPt~g------LD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~ 192 (251)
+...+|+++++| |+++ +|+.....+++.|.++. + |++||+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 346899999999 7754 79999999999998874 3 999999999864
No 465
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=99.08 E-value=3.9e-09 Score=106.47 Aligned_cols=54 Identities=26% Similarity=0.310 Sum_probs=49.3
Q ss_pred HHHHHccCCCEEEEeCCCCCC-CHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHh
Q psy7367 143 VAMAFIGGSRTVILDEPTSGV-DPYSRRSIWELLIKYK-KGRTVILTTHYMDEADL 196 (251)
Q Consensus 143 ia~al~~~p~llllDEPt~gL-D~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~ 196 (251)
|++++..+|.++++|||+.+| |+..++.+.+.++.++ .|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 677889999999999999999 7999999999999985 58999999999998875
No 466
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=99.08 E-value=3.2e-09 Score=99.41 Aligned_cols=174 Identities=21% Similarity=0.262 Sum_probs=110.0
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---ChH------HhhcceEEEccCC
Q psy7367 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---DMT------TIRRSLGVCPQYN 83 (251)
Q Consensus 13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~------~~~~~i~~v~q~~ 83 (251)
+..+++++ |.+.+|+.++|+|+||+|||||+++|++..+|+.|.+...|+.-.. ... .+++.+.++.+..
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d 228 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD 228 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence 45789999 9999999999999999999999999999999999988776654321 010 1122333333321
Q ss_pred CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH--ccCCCEEEEeCC--
Q psy7367 84 ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF--IGGSRTVILDEP-- 159 (251)
Q Consensus 84 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al--~~~p~llllDEP-- 159 (251)
. ++.+-..-.. ..-.+.+.+...|-+-+. -..+|+- .|+|+ +. +.+.||
T Consensus 229 ~-----~p~~r~~~~~---------~a~t~AE~frd~G~~Vll--~~DslTr-------~A~A~REis----l~~ge~P~ 281 (440)
T TIGR01026 229 Q-----SPLLRLKGAY---------VATAIAEYFRDQGKDVLL--LMDSVTR-------FAMAQREIG----LAAGEPPA 281 (440)
T ss_pred C-----CHHHHHHHHH---------HHHHHHHHHHHCCCCEEE--EEeChHH-------HHHHHHHHH----HhcCCCCc
Confidence 1 1111111000 001122223233432111 1222321 22221 11 345675
Q ss_pred CCCCCHHHHHHHHHHHHhhh-CCC-------eEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367 160 TSGVDPYSRRSIWELLIKYK-KGR-------TVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 216 (251)
Q Consensus 160 t~gLD~~~~~~l~~~l~~l~-~g~-------tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 216 (251)
+.|+||.....+.+++.+.. .+. ||++.+||+. ..+||++..+.+|+++.+.+..
T Consensus 282 ~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~--dpi~d~~~~i~dG~ivLsr~la 344 (440)
T TIGR01026 282 TKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN--EPIADSVRGILDGHIVLSRALA 344 (440)
T ss_pred ccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC--cchhhhhccccceEEEEecchh
Confidence 45999999999999998874 356 8999999984 5689999999999999887654
No 467
>PRK06315 type III secretion system ATPase; Provisional
Probab=99.02 E-value=5.7e-10 Score=104.10 Aligned_cols=165 Identities=15% Similarity=0.179 Sum_probs=104.3
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEEcc---eeCCC-ChHHh---hcceEEE-----c
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-SSGTAKIYN---HDIRT-DMTTI---RRSLGVC-----P 80 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-~~G~i~~~g---~~~~~-~~~~~---~~~i~~v-----~ 80 (251)
..+++++ |++.+|+.++|+|+||+|||||+++|+|+.++ +.|.|.+.| +++.. ....+ ..+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 4588887 99999999999999999999999999998854 446676644 44421 11111 1234555 8
Q ss_pred cCC--CCCCCCCHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCC-----cccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367 81 QYN--ALFDKLTVEEHMWFYSQLKQVP---KDLAQLEISNMIVDLGIP-----HKRTSLANTLSGGMQRKLSVAMAFIGG 150 (251)
Q Consensus 81 q~~--~l~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~~l~~~~l~-----~~~~~~~~~LSgG~kqrv~ia~al~~~ 150 (251)
|++ .+.+.+ +...++-+.+.++.. ..+...++.++++.+++. .....+|+.||. +++-+
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~-------l~~ll--- 299 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST-------LPKLL--- 299 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH-------hHHHH---
Confidence 876 333333 444444444433322 245567888999999983 455667777663 22211
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCC-----CeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367 151 SRTVILDEPTSGVDPYSRRSIWELLIKYKKG-----RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214 (251)
Q Consensus 151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~g-----~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~ 214 (251)
+-.-....| -||++..+|+++. ++|.+.-+-+|.|+.+-.
T Consensus 300 ----------------------ERag~~~~GSITai~tVl~~gdD~~dp--i~d~~~~i~dg~ivLsr~ 344 (442)
T PRK06315 300 ----------------------ERSGASDKGTITAFYTVLVAGDDMNEP--VADEVKSILDGHIVLSNA 344 (442)
T ss_pred ----------------------HHhcCCCCcceeeeEEEEecCCCCCcc--cHHHhhhhcceEEEEecc
Confidence 000000123 2666777777654 678888888898887644
No 468
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.00 E-value=3.4e-10 Score=93.66 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=50.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHH
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFY 98 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~ 98 (251)
+||+++|+|+||||||||+++|++++.| +.++|.++.......+...++.+|+...++..++..++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999999887 58888887542222222456777765555566677776653
No 469
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.98 E-value=1.9e-09 Score=109.51 Aligned_cols=79 Identities=25% Similarity=0.322 Sum_probs=68.4
Q ss_pred CCCCCcCChhHHHHHHHHHHH------ccC--CCEEEEeCCCCCCCHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHHhh
Q psy7367 127 TSLANTLSGGMQRKLSVAMAF------IGG--SRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLL 197 (251)
Q Consensus 127 ~~~~~~LSgG~kqrv~ia~al------~~~--p~llllDEPt~gLD~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~~~ 197 (251)
-+++..|||||+-.++||.+| ..+ -++++|||||..||+..++.++++|..+.. +.+|+||||+-++.+ .
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e-~ 888 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKE-R 888 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHH-h
Confidence 368899999999988887766 345 699999999999999999999999999864 899999999987775 5
Q ss_pred cCEEEEeeC
Q psy7367 198 GDRIAIIAA 206 (251)
Q Consensus 198 ~d~i~~l~~ 206 (251)
+|+++.++.
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 788887764
No 470
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.96 E-value=5.6e-09 Score=105.19 Aligned_cols=135 Identities=24% Similarity=0.332 Sum_probs=84.0
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-CCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML-PVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE 93 (251)
Q Consensus 15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 93 (251)
.+-+|+++. +.+.++.|.|||.+||||+||.++-.. -..-| .|||-... .+++.+
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G--------------------~~VPa~~a---~i~~~d 651 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG--------------------SFVPAESA---RIGIVD 651 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC--------------------Cceeccce---EecccC
Confidence 455677777 667899999999999999999987431 11111 12222211 011111
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc--CCCEEEEeCC---CCCCCHHHH
Q psy7367 94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG--GSRTVILDEP---TSGVDPYSR 168 (251)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~--~p~llllDEP---t~gLD~~~~ 168 (251)
.+ +.++|-. +.....+|.=+.....++.+|-. ++.++|+||| |+.+|..+
T Consensus 652 ~I---------------------~triga~---d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a- 706 (854)
T PRK05399 652 RI---------------------FTRIGAS---DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS- 706 (854)
T ss_pred ee---------------------eeccCcc---cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH-
Confidence 11 0011211 11234566666677777777654 9999999999 99999443
Q ss_pred HHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCE
Q psy7367 169 RSIWELLIKYK-K-GRTVILTTHYMDEADLLGDR 200 (251)
Q Consensus 169 ~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~ 200 (251)
..+.++..+. . +.++|++||+ .++..++++
T Consensus 707 -ia~aile~l~~~~~~~~l~aTH~-~el~~l~~~ 738 (854)
T PRK05399 707 -IAWAVAEYLHDKIGAKTLFATHY-HELTELEEK 738 (854)
T ss_pred -HHHHHHHHHHhcCCceEEEEech-HHHHHHhhh
Confidence 4566666664 3 5899999999 455567765
No 471
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.96 E-value=3.3e-08 Score=99.31 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=44.8
Q ss_pred HHccCCCEEEEeCCCCCCC-HHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHh
Q psy7367 146 AFIGGSRTVILDEPTSGVD-PYSRRSIWELLIKYK-KGRTVILTTHYMDEADL 196 (251)
Q Consensus 146 al~~~p~llllDEPt~gLD-~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~ 196 (251)
.+..+|.++++|||...|| +..++.+.+.++..+ .|..++++||+++.+..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHh
Confidence 4567999999999999999 899999999999985 58999999999977553
No 472
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.96 E-value=3.9e-09 Score=109.73 Aligned_cols=144 Identities=18% Similarity=0.151 Sum_probs=84.0
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC-CCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHH
Q psy7367 20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGM-LPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFY 98 (251)
Q Consensus 20 isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~ 98 (251)
++++.++++++||+|++|+|||||++.+.+- ....+|.+++++..+..... .+-.+.+.- .+....
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~------~~~~~~~~~-------~~~~~~ 266 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSME------IYSSANPDD-------YNMKLH 266 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchh------hcccccccc-------cchhHH
Confidence 4677889999999999999999999999554 45568999887533211100 000111110 011110
Q ss_pred HHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367 99 SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178 (251)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l 178 (251)
. ..+.+.++++..++. +..+ ++.++| |..++-+++||+- |.. ..++.+...
T Consensus 267 l---------~~~~l~~il~~~~~~------~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L~~~ 317 (1153)
T PLN03210 267 L---------QRAFLSEILDKKDIK------IYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVLDALAGQ 317 (1153)
T ss_pred H---------HHHHHHHHhCCCCcc------cCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHHHHHHhh
Confidence 0 112233444444431 2222 455555 4466778888983 332 334444432
Q ss_pred ----hCCCeEEEEeCCHHHHHhh-cCEEEEee
Q psy7367 179 ----KKGRTVILTTHYMDEADLL-GDRIAIIA 205 (251)
Q Consensus 179 ----~~g~tiii~tHd~~~~~~~-~d~i~~l~ 205 (251)
..|.+||++|||...+... +|+++.+.
T Consensus 318 ~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 318 TQWFGSGSRIIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred CccCCCCcEEEEEeCcHHHHHhcCCCeEEEec
Confidence 2489999999999998765 67776653
No 473
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.95 E-value=1.4e-09 Score=114.07 Aligned_cols=64 Identities=27% Similarity=0.333 Sum_probs=56.4
Q ss_pred cCCCCCcCChhHHHHHH----HHHH--------HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCH
Q psy7367 126 RTSLANTLSGGMQRKLS----VAMA--------FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYM 191 (251)
Q Consensus 126 ~~~~~~~LSgG~kqrv~----ia~a--------l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~ 191 (251)
.++.++.|||||||+++ +|++ +..+|++++|||||+|||+.++..+++++.++ +.++||+||.+
T Consensus 1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence 34567999999999996 5655 55899999999999999999999999999988 68899999975
No 474
>PRK14079 recF recombination protein F; Provisional
Probab=98.92 E-value=2.5e-09 Score=97.58 Aligned_cols=78 Identities=21% Similarity=0.272 Sum_probs=63.8
Q ss_pred CcCChhHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEE
Q psy7367 131 NTLSGGMQRKLSVAMAFI---------GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRI 201 (251)
Q Consensus 131 ~~LSgG~kqrv~ia~al~---------~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i 201 (251)
..+|+||++++++|..|+ .+|+++|||||+++||+..+..+++.|.... .++|-+|+ ....||++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~----~~~~~~~~ 335 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE----APPGAALT 335 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC----CCCCCceE
Confidence 478999999999999999 8999999999999999999999999886543 23333332 34578999
Q ss_pred EEeeCCEEEeecC
Q psy7367 202 AIIAAGKLQCCGS 214 (251)
Q Consensus 202 ~~l~~G~i~~~g~ 214 (251)
+.+.+|++.-+.+
T Consensus 336 ~~~~~~~~~~~~~ 348 (349)
T PRK14079 336 LRIEAGVFTPEAP 348 (349)
T ss_pred EEEeccEecCCCC
Confidence 9999998865443
No 475
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.90 E-value=8.5e-09 Score=100.55 Aligned_cols=110 Identities=20% Similarity=0.286 Sum_probs=76.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeE--------EEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHH
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGT--------AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF 97 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~--------i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~ 97 (251)
..+.+.|+||||+|||||++++.++.++..|+ +.+++..+....... .+-.+
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i--------------------~~~ll 233 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV--------------------TNPLL 233 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH--------------------hHHhc
Confidence 34679999999999999999999988655443 555544331110000 11111
Q ss_pred HHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q psy7367 98 YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177 (251)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 177 (251)
. ...+.....+...++.+|+.......+.++||| +|+||| +..||+..+..+++.+.+
T Consensus 234 g-----~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 234 G-----SVHDPIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred C-----CccHHHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 1 011112233555688889988888899999999 999999 799999999999999975
No 476
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.88 E-value=5.8e-09 Score=83.10 Aligned_cols=140 Identities=18% Similarity=0.113 Sum_probs=76.4
Q ss_pred EEEEcCCCCcHHHHHHHHh--CCCCCCeeEEEEcceeCCCChHHhhcceEEEc-cCCCCCC-----------------CC
Q psy7367 30 TSFLGHNGAGKTTTISMLM--GMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP-QYNALFD-----------------KL 89 (251)
Q Consensus 30 ~~liG~NGaGKSTLlk~l~--Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~-q~~~l~~-----------------~l 89 (251)
++|+|++|||||||++.|+ +..++.+|++... ..... ..... .+.+ +-|.+.. .+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t-~~~~~--~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKT-QLINF--FNVND--KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcc-eeEEE--EEccC--eEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence 6899999999999999999 6766666654221 11000 00000 1111 1121110 00
Q ss_pred CHHHHHHHHHHh--cCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHH-----ccCCCEEEEeCCCC
Q psy7367 90 TVEEHMWFYSQL--KQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAF-----IGGSRTVILDEPTS 161 (251)
Q Consensus 90 tv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al-----~~~p~llllDEPt~ 161 (251)
+..+++.....+ ...........+..++..++.. -....+...+|.+++++....... ...|+++ |+|
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~S 152 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFS 152 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEe
Confidence 111111111011 1111112333455667776644 223345777899988877665542 3456665 999
Q ss_pred CCCHHHHHHHHHHHHhh
Q psy7367 162 GVDPYSRRSIWELLIKY 178 (251)
Q Consensus 162 gLD~~~~~~l~~~l~~l 178 (251)
++|.....++++.|.++
T Consensus 153 a~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 153 SLKGQGIDELRALIEKW 169 (170)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 99999999999988764
No 477
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.83 E-value=4.4e-08 Score=89.23 Aligned_cols=122 Identities=20% Similarity=0.212 Sum_probs=74.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLP-VSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ 103 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~ 103 (251)
.++.++.|.||+||||||+++++.+.+. +..+.|.....++... ......++.|..
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~---~~~~~~~i~q~e-------------------- 176 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV---HRNKRSLINQRE-------------------- 176 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh---ccCccceEEccc--------------------
Confidence 4678999999999999999999998665 4466666544332110 000001111100
Q ss_pred CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCe
Q psy7367 104 VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRT 183 (251)
Q Consensus 104 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~t 183 (251)
.+.. ..+ -.-++++||-++|+++++||+. |+.+....++ ....|.+
T Consensus 177 ----------------vg~~--------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---aa~tGh~ 222 (343)
T TIGR01420 177 ----------------VGLD--------TLS----FANALRAALREDPDVILIGEMR---DLETVELALT---AAETGHL 222 (343)
T ss_pred ----------------cCCC--------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH---HHHcCCc
Confidence 0100 000 1134677889999999999997 8877754443 3345899
Q ss_pred EEEEeCCHHHHHhhcCEEEEe
Q psy7367 184 VILTTHYMDEADLLGDRIAII 204 (251)
Q Consensus 184 iii~tHd~~~~~~~~d~i~~l 204 (251)
|+.+.|..+... ..+|+.-|
T Consensus 223 v~~T~Ha~~~~~-~~~Rl~~~ 242 (343)
T TIGR01420 223 VFGTLHTNSAAQ-TIERIIDV 242 (343)
T ss_pred EEEEEcCCCHHH-HHHHHHHh
Confidence 999999865543 34555433
No 478
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.83 E-value=3.7e-09 Score=93.89 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=55.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC--CCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGMLP--VSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK 102 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~ 102 (251)
-.++||.||||||||||+++|.+++. |++|+|.+-+.|--......++..+++ |...+++.+++.+.+.+...++
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 36999999999999999999999987 788988776655422222233445654 7777777888988888765553
No 479
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.83 E-value=7.2e-09 Score=87.06 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=26.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
++|++++|+||+|||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
No 480
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.82 E-value=1e-08 Score=96.59 Aligned_cols=138 Identities=12% Similarity=0.126 Sum_probs=80.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE-EEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHh
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA-KIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL 101 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~ 101 (251)
-+.+|+++.|.|++|+|||||+..++.......+.+ ++.+++.........+++++.+++..++..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e------------- 156 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSE------------- 156 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCC-------------
Confidence 589999999999999999999999887655444444 555554211111111223322211111100
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCC---------CHHHHHHHH
Q psy7367 102 KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV---------DPYSRRSIW 172 (251)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gL---------D~~~~~~l~ 172 (251)
.+- -+-...+ --.+|+++++|.-++-. +....+.+.
T Consensus 157 -------------------------------~~~--~~I~~~i--~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~ 201 (454)
T TIGR00416 157 -------------------------------TNW--EQICANI--EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECT 201 (454)
T ss_pred -------------------------------CCH--HHHHHHH--HhcCCcEEEEecchhhcccccccCCCCHHHHHHHH
Confidence 000 0001111 12478999999865421 122344455
Q ss_pred HHHHhh-h-CCCeEEEEeCCHHH--------HHhhcCEEEEeeCCE
Q psy7367 173 ELLIKY-K-KGRTVILTTHYMDE--------ADLLGDRIAIIAAGK 208 (251)
Q Consensus 173 ~~l~~l-~-~g~tiii~tHd~~~--------~~~~~d~i~~l~~G~ 208 (251)
..|.++ + .|.|+++++|...+ ++.++|.++.|+.++
T Consensus 202 ~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 202 AELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred HHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 555555 4 49999999997654 677899999998654
No 481
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.78 E-value=2.2e-09 Score=90.78 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=27.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLPV 53 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p 53 (251)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
No 482
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.77 E-value=2.7e-09 Score=88.40 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCC-cccCCCCCcCChhHHHHHH--HHHHHcc-CCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367 112 EISNMIVDLGIP-HKRTSLANTLSGGMQRKLS--VAMAFIG-GSRTVILDEPTSGVDPYSRRSIWELLIKY 178 (251)
Q Consensus 112 ~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~--ia~al~~-~p~llllDEPt~gLD~~~~~~l~~~l~~l 178 (251)
.+.++++..++. -..-.++..+|+|++|++. +++.+-. +++++ |+|++|..+.+.+++.|.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~ 192 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKW 192 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHH
Confidence 455566666765 3344577889999999877 5555543 34443 99999999999999999875
No 483
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.76 E-value=1e-08 Score=88.02 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=52.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeE----EEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHH
Q psy7367 24 FYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT----AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS 99 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~----i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~ 99 (251)
-.+..++||.||||||||||+++|++++++++|. |.+++... . ...+...+++++.. .+..+++.+.+.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~--~-~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~ 105 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL--D-NAVLDAHGLRPRKG-APETFDVAGLAALLR 105 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC--C-HHHHHhcccccccC-CCCCCCHHHHHHHHH
Confidence 3457899999999999999999999999999998 44444322 1 22334567777633 345667877776655
Q ss_pred Hhc
Q psy7367 100 QLK 102 (251)
Q Consensus 100 ~~~ 102 (251)
.++
T Consensus 106 ~l~ 108 (229)
T PRK09270 106 RLR 108 (229)
T ss_pred HHH
Confidence 443
No 484
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.74 E-value=7.3e-08 Score=74.62 Aligned_cols=54 Identities=17% Similarity=0.081 Sum_probs=41.9
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh------CCCeEEEEeCCHH
Q psy7367 138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK------KGRTVILTTHYMD 192 (251)
Q Consensus 138 kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~------~g~tiii~tHd~~ 192 (251)
.+......+...++.++++||.-.. ++.....+.+.+.... .+..+|+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5556667777889999999998665 6667778888887763 4788999998754
No 485
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.73 E-value=1.2e-08 Score=95.09 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=53.2
Q ss_pred EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee
Q psy7367 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64 (251)
Q Consensus 3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~ 64 (251)
.++++..|..+..+++++ |++.+|+.++|+|+||+|||||+++|+++.+|+.|.+.+.|+.
T Consensus 132 r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 132 RQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 345666674457899999 9999999999999999999999999999999999988877764
No 486
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.73 E-value=1.5e-08 Score=84.26 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=42.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hHHhhcceEEEccCC
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTTIRRSLGVCPQYN 83 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~ 83 (251)
|++++|+||||||||||+++|++...| .+.+.+..+... ....+..+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999998876 577777776532 223345677888763
No 487
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.72 E-value=3e-08 Score=92.53 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=62.0
Q ss_pred EEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC---hHHh----hcceEEEc
Q psy7367 8 KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD---MTTI----RRSLGVCP 80 (251)
Q Consensus 8 ~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~---~~~~----~~~i~~v~ 80 (251)
..+..+..+++++ |++.+|+.++|+|+||+|||||+++|+|...|+.|.+...|++-..- .... ....++++
T Consensus 127 ~~l~tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv 205 (422)
T TIGR02546 127 QPLPTGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLV 205 (422)
T ss_pred cccCCCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEE
Confidence 3343446799999 99999999999999999999999999999999999998866543211 1111 13456778
Q ss_pred cCCCCCCCCCH
Q psy7367 81 QYNALFDKLTV 91 (251)
Q Consensus 81 q~~~l~~~ltv 91 (251)
+....++.++.
T Consensus 206 ~~~s~~p~~~r 216 (422)
T TIGR02546 206 VSTSDRPSLER 216 (422)
T ss_pred eccccCCHHHH
Confidence 87776665443
No 488
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.71 E-value=3.1e-08 Score=89.34 Aligned_cols=58 Identities=19% Similarity=0.347 Sum_probs=50.3
Q ss_pred EEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee
Q psy7367 6 LSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64 (251)
Q Consensus 6 l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~ 64 (251)
++..|..+..+++.+ +.+.+|++++|+|+||+|||||+++|+|...|+.|.+..-|++
T Consensus 49 ~~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 49 IDEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred ceeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 344554456799999 9999999999999999999999999999999999988876654
No 489
>PRK08149 ATP synthase SpaL; Validated
Probab=98.71 E-value=2.6e-08 Score=92.67 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=58.4
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCe---eEEEEcceeCCCChHH-----hhcceEEEccCCC
Q psy7367 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSS---GTAKIYNHDIRTDMTT-----IRRSLGVCPQYNA 84 (251)
Q Consensus 13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~---G~i~~~g~~~~~~~~~-----~~~~i~~v~q~~~ 84 (251)
+..+++++ +++.+|++++|+|+||+|||||+++|++...++. |.|..+|+++..-..+ ..+++++|+....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 35799999 9999999999999999999999999999999987 8999999887431111 2357888887553
No 490
>PRK01889 GTPase RsgA; Reviewed
Probab=98.70 E-value=3.1e-08 Score=90.68 Aligned_cols=78 Identities=23% Similarity=0.297 Sum_probs=61.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHH
Q psy7367 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMW 96 (251)
Q Consensus 17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~ 96 (251)
++.+.-.+++|++++|+|+||+|||||+++|+|...|..|+|.+++..-. ....++.+++++|...+++ .++..++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~--~tt~~~~l~~l~~~~~l~D-tpG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGR--HTTTHRELHPLPSGGLLID-TPGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCc--chhhhccEEEecCCCeecC-CCchhhhc
Confidence 55566678899999999999999999999999999999999999875421 1223567999999887775 35666655
Q ss_pred H
Q psy7367 97 F 97 (251)
Q Consensus 97 ~ 97 (251)
+
T Consensus 262 l 262 (356)
T PRK01889 262 L 262 (356)
T ss_pred c
Confidence 4
No 491
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.68 E-value=2e-08 Score=95.39 Aligned_cols=61 Identities=25% Similarity=0.335 Sum_probs=56.0
Q ss_pred EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeC
Q psy7367 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI 65 (251)
Q Consensus 4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 65 (251)
.|+++.|+. ..+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.+....+
T Consensus 188 ~d~~~v~Gq-~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 188 HDLSDVIGQ-EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred cCeEEEECc-HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 578888864 6799999999999999999999999999999999999999999999987665
No 492
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.67 E-value=7.6e-08 Score=88.51 Aligned_cols=137 Identities=14% Similarity=0.201 Sum_probs=78.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-EcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHh
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL 101 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~ 101 (251)
-+.+|+++.|.|++|+|||||+..++.......+.+. +.+++.........+++++..++..++...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~------------ 145 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAET------------ 145 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccC------------
Confidence 4889999999999999999999999887665555654 445432111111112333222211111100
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC----CCCC-----HHHHHHHH
Q psy7367 102 KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT----SGVD-----PYSRRSIW 172 (251)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt----~gLD-----~~~~~~l~ 172 (251)
.++++++ ..--.+|+++++|+-. ..+| ....+.+.
T Consensus 146 ----------~le~I~~--------------------------~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~ 189 (372)
T cd01121 146 ----------NLEDILA--------------------------SIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECT 189 (372)
T ss_pred ----------cHHHHHH--------------------------HHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHH
Confidence 0011111 0112589999999953 2332 22333444
Q ss_pred HHHHhh-h-CCCeEEEEeCCHH--------HHHhhcCEEEEeeCC
Q psy7367 173 ELLIKY-K-KGRTVILTTHYMD--------EADLLGDRIAIIAAG 207 (251)
Q Consensus 173 ~~l~~l-~-~g~tiii~tHd~~--------~~~~~~d~i~~l~~G 207 (251)
..|.++ + .+.|++++.|-.. .++.++|.++.++..
T Consensus 190 ~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 190 AELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred HHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 445554 3 3899999999433 367889999988754
No 493
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.67 E-value=2.3e-08 Score=90.16 Aligned_cols=73 Identities=19% Similarity=0.096 Sum_probs=56.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-----h--HHhhcceEEEccCCCCCCCCCHHHHHHH
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-----M--TTIRRSLGVCPQYNALFDKLTVEEHMWF 97 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-----~--~~~~~~i~~v~q~~~l~~~ltv~e~l~~ 97 (251)
++|++++++|||||||||++..|++.+.+..++|.+-+.|.... . ...+..+.+++|.....+..++++++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999889999988776321 1 1234678999987655555566676654
No 494
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.67 E-value=3.3e-08 Score=82.30 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHH--HHhhcCEEEEeeCCE
Q psy7367 136 GMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDE--ADLLGDRIAIIAAGK 208 (251)
Q Consensus 136 G~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~--~~~~~d~i~~l~~G~ 208 (251)
|+-+|..||.++..+|+.+..+| +.+||..++.+.+.+.+.. +|.+||+.+|.+.+ +..+||++++++.+.
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~ 134 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSP 134 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCH
Confidence 88899999999999999988877 8899999999999998875 46899999999965 778899999988763
No 495
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.65 E-value=5.5e-07 Score=90.69 Aligned_cols=62 Identities=24% Similarity=0.281 Sum_probs=50.2
Q ss_pred HccCCCEEEEeCCCCCCC-HHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHH---------hhcCEEEEeeCCE
Q psy7367 147 FIGGSRTVILDEPTSGVD-PYSRRSIWELLIKYK-KGRTVILTTHYMDEAD---------LLGDRIAIIAAGK 208 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD-~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~---------~~~d~i~~l~~G~ 208 (251)
+-.+|+++++|||+.+|| +..++.+.+.++..+ .|.+++++||+++.+. ..|+..++|.+.+
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~~ 704 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNER 704 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCch
Confidence 456899999999999999 788999999999885 5899999999997554 3456666666543
No 496
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.65 E-value=3e-08 Score=88.21 Aligned_cols=83 Identities=17% Similarity=0.250 Sum_probs=59.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE---cceeCCCChHHhh-cceEEEccCCCC---C-CC
Q psy7367 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI---YNHDIRTDMTTIR-RSLGVCPQYNAL---F-DK 88 (251)
Q Consensus 17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~---~g~~~~~~~~~~~-~~i~~v~q~~~l---~-~~ 88 (251)
++.+...+. +++++++|+||+|||||+|.|.|...++.|+|.. .|+..+.....++ ...+++.+.|.+ . ..
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~ 230 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLH 230 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCcc
Confidence 344444555 5899999999999999999999999999999976 3443332222222 236799999876 3 46
Q ss_pred CCHHHHHHHHHH
Q psy7367 89 LTVEEHMWFYSQ 100 (251)
Q Consensus 89 ltv~e~l~~~~~ 100 (251)
++..|...++..
T Consensus 231 ~~~~~~~~~f~~ 242 (287)
T cd01854 231 IDPEELAHYFPE 242 (287)
T ss_pred CCHHHHHHHhHH
Confidence 788887766543
No 497
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.64 E-value=1.2e-06 Score=75.70 Aligned_cols=47 Identities=28% Similarity=0.427 Sum_probs=35.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHh-h-hC-CCeEEEEeCCHHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIK-Y-KK-GRTVILTTHYMDEAD 195 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~-l-~~-g~tiii~tHd~~~~~ 195 (251)
.+..++|+||+..|=++.....+...+.+ + ++ +..++++||+.+...
T Consensus 121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred ccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 46779999999999999998887765554 4 33 889999999987654
No 498
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.63 E-value=3.5e-08 Score=90.31 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=41.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCC--Ce-eEEEEcceeCCCChHHhhcceEEEccCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLPV--SS-GTAKIYNHDIRTDMTTIRRSLGVCPQYN 83 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p--~~-G~i~~~g~~~~~~~~~~~~~i~~v~q~~ 83 (251)
++|..+.|+||+||||||+|++|++.+.+ .. +.|.....++....+..+...++++|..
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~ 193 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSE 193 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeee
Confidence 48899999999999999999999998743 33 4565544444322223334457788864
No 499
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.59 E-value=2.8e-08 Score=67.89 Aligned_cols=39 Identities=26% Similarity=0.464 Sum_probs=32.3
Q ss_pred eeeeeEEEeC-CcEEEEEcCCCCcHHHHHHHHhCCCCCCe
Q psy7367 17 VNGLNVNFYE-DQITSFLGHNGAGKTTTISMLMGMLPVSS 55 (251)
Q Consensus 17 l~~isl~i~~-Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~ 55 (251)
+++-++++.+ |+++.|.|||||||||+|.+|.=++-|..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4556788875 57999999999999999999987776654
No 500
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.58 E-value=1.1e-07 Score=70.11 Aligned_cols=51 Identities=29% Similarity=0.377 Sum_probs=39.7
Q ss_pred CCCCCcCChhHHH-HHHHHHHH------cc------CCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q psy7367 127 TSLANTLSGGMQR-KLSVAMAF------IG------GSRTVILDEPTSGVDPYSRRSIWELLIK 177 (251)
Q Consensus 127 ~~~~~~LSgG~kq-rv~ia~al------~~------~p~llllDEPt~gLD~~~~~~l~~~l~~ 177 (251)
.+..+.+|||||| .+.+|.++ .. .|++++|||||++||+..++.++++|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4678999999994 44444432 23 3799999999999999999999999874
Done!