Query psy7367
Match_columns 251
No_of_seqs 315 out of 1086
Neff 7.8
Searched_HMMs 29240
Date Sat Aug 17 00:54:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 6E-64 2.1E-68 455.0 30.2 219 1-219 25-252 (366)
2 3gfo_A Cobalt import ATP-bindi 100.0 3.2E-64 1.1E-68 442.6 26.7 219 1-219 8-232 (275)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 3.7E-64 1.3E-68 455.9 26.7 218 1-219 5-227 (359)
4 3rlf_A Maltose/maltodextrin im 100.0 1.1E-63 3.6E-68 455.8 29.1 217 1-219 4-222 (381)
5 2olj_A Amino acid ABC transpor 100.0 3.8E-63 1.3E-67 433.2 31.1 219 1-220 25-248 (263)
6 1vpl_A ABC transporter, ATP-bi 100.0 4.4E-63 1.5E-67 431.3 29.9 220 1-221 16-236 (256)
7 1b0u_A Histidine permease; ABC 100.0 4.2E-63 1.5E-67 432.7 29.4 219 1-220 7-242 (262)
8 2pcj_A ABC transporter, lipopr 100.0 9.6E-63 3.3E-67 421.2 29.3 212 1-214 5-222 (224)
9 3tif_A Uncharacterized ABC tra 100.0 6.8E-63 2.3E-67 425.0 27.4 217 1-218 2-232 (235)
10 1z47_A CYSA, putative ABC-tran 100.0 1.8E-62 6.2E-67 444.6 29.1 217 1-219 15-234 (355)
11 2it1_A 362AA long hypothetical 100.0 3.2E-62 1.1E-66 444.3 29.3 217 1-219 4-222 (362)
12 2yyz_A Sugar ABC transporter, 100.0 1.9E-62 6.4E-67 445.4 27.6 217 1-219 4-222 (359)
13 4g1u_C Hemin import ATP-bindin 100.0 2.5E-62 8.4E-67 428.8 26.5 215 1-218 12-235 (266)
14 1g6h_A High-affinity branched- 100.0 1.7E-62 5.9E-67 427.6 24.8 216 1-217 8-239 (257)
15 1g29_1 MALK, maltose transport 100.0 5.3E-62 1.8E-66 444.6 29.0 218 1-219 4-228 (372)
16 1oxx_K GLCV, glucose, ABC tran 100.0 1.7E-62 5.8E-67 445.2 24.8 218 1-219 4-229 (353)
17 1v43_A Sugar-binding transport 100.0 5.2E-62 1.8E-66 444.3 27.5 217 1-219 12-230 (372)
18 1ji0_A ABC transporter; ATP bi 100.0 9.9E-62 3.4E-66 418.9 27.5 217 1-219 7-227 (240)
19 3d31_A Sulfate/molybdate ABC t 100.0 1.3E-61 4.5E-66 438.3 26.8 213 1-219 2-216 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 2.7E-61 9.4E-66 416.2 23.9 213 1-220 2-216 (240)
21 2yz2_A Putative ABC transporte 100.0 8.4E-61 2.9E-65 419.0 24.8 218 1-221 3-228 (266)
22 2ihy_A ABC transporter, ATP-bi 100.0 2E-60 6.8E-65 419.3 22.7 217 1-218 22-250 (279)
23 2d2e_A SUFC protein; ABC-ATPas 100.0 1.5E-59 5.2E-64 407.5 24.2 216 1-217 4-230 (250)
24 2ff7_A Alpha-hemolysin translo 100.0 3.9E-59 1.3E-63 404.4 25.2 212 1-220 8-232 (247)
25 2ixe_A Antigen peptide transpo 100.0 5E-59 1.7E-63 408.8 24.7 217 1-220 17-245 (271)
26 2zu0_C Probable ATP-dependent 100.0 1.7E-58 5.8E-63 404.6 27.2 218 1-219 21-253 (267)
27 2nq2_C Hypothetical ABC transp 100.0 1.6E-58 5.5E-63 401.8 26.7 205 1-218 5-215 (253)
28 3nh6_A ATP-binding cassette SU 100.0 7.3E-59 2.5E-63 413.8 24.1 213 1-221 54-278 (306)
29 2qi9_C Vitamin B12 import ATP- 100.0 2.5E-58 8.5E-63 399.7 24.3 207 1-218 5-220 (249)
30 1mv5_A LMRA, multidrug resista 100.0 1.5E-58 5E-63 399.7 18.9 213 1-220 2-226 (243)
31 1sgw_A Putative ABC transporte 100.0 8.5E-59 2.9E-63 394.2 16.3 199 1-209 11-210 (214)
32 2pjz_A Hypothetical protein ST 100.0 1.1E-57 3.7E-62 398.7 22.0 208 1-220 2-215 (263)
33 2ghi_A Transport protein; mult 100.0 6.7E-57 2.3E-61 393.1 24.5 211 1-220 18-242 (260)
34 3gd7_A Fusion complex of cysti 100.0 1.1E-56 3.8E-61 411.5 19.5 209 1-219 20-241 (390)
35 2pze_A Cystic fibrosis transme 100.0 1E-55 3.5E-60 378.8 23.7 199 1-220 7-218 (229)
36 2cbz_A Multidrug resistance-as 100.0 1.5E-55 5.3E-60 379.6 20.8 202 1-220 4-217 (237)
37 3b5x_A Lipid A export ATP-bind 100.0 4.8E-54 1.6E-58 412.9 23.4 213 1-220 342-567 (582)
38 3b60_A Lipid A export ATP-bind 100.0 4.8E-54 1.7E-58 412.9 22.5 214 1-221 342-568 (582)
39 2yl4_A ATP-binding cassette SU 100.0 9.8E-54 3.4E-58 411.7 23.0 214 1-220 342-570 (595)
40 4a82_A Cystic fibrosis transme 100.0 9.1E-54 3.1E-58 410.7 21.5 213 1-221 340-565 (578)
41 3qf4_A ABC transporter, ATP-bi 100.0 9.1E-54 3.1E-58 411.4 20.6 216 1-220 342-566 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 5.4E-54 1.8E-58 413.8 18.3 213 1-221 355-579 (598)
43 2bbs_A Cystic fibrosis transme 100.0 3.6E-52 1.2E-56 368.4 20.4 194 1-219 41-246 (290)
44 4f4c_A Multidrug resistance pr 100.0 6.1E-50 2.1E-54 413.7 21.0 223 1-231 1077-1313(1321)
45 3g5u_A MCG1178, multidrug resi 100.0 1.5E-48 5.1E-53 402.5 24.7 216 1-220 388-613 (1284)
46 3g5u_A MCG1178, multidrug resi 100.0 5.7E-49 1.9E-53 405.6 20.3 215 1-221 1031-1259(1284)
47 4f4c_A Multidrug resistance pr 100.0 5.7E-48 2E-52 399.0 24.9 212 1-220 416-641 (1321)
48 3bk7_A ABC transporter ATP-bin 100.0 3.8E-48 1.3E-52 372.9 21.7 201 1-219 358-562 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 3.5E-48 1.2E-52 369.0 19.9 201 1-219 288-492 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 9.9E-48 3.4E-52 365.6 19.2 199 1-215 270-472 (538)
51 1yqt_A RNAse L inhibitor; ATP- 100.0 7.1E-47 2.4E-51 359.9 12.7 194 4-207 25-234 (538)
52 3bk7_A ABC transporter ATP-bin 100.0 9E-47 3.1E-51 363.4 13.4 194 4-207 95-304 (607)
53 3j16_B RLI1P; ribosome recycli 100.0 4.7E-46 1.6E-50 358.1 17.6 199 4-218 350-557 (608)
54 2iw3_A Elongation factor 3A; a 100.0 4E-45 1.4E-49 364.6 16.8 202 1-214 672-981 (986)
55 2iw3_A Elongation factor 3A; a 100.0 4E-44 1.4E-48 357.4 22.5 195 2-219 437-634 (986)
56 3ux8_A Excinuclease ABC, A sub 100.0 6E-45 2E-49 354.8 14.7 203 13-219 30-297 (670)
57 3j16_B RLI1P; ribosome recycli 100.0 5.8E-43 2E-47 336.6 14.8 196 5-208 82-298 (608)
58 3ozx_A RNAse L inhibitor; ATP 100.0 1.4E-42 4.8E-47 330.2 13.3 192 4-207 3-213 (538)
59 3ux8_A Excinuclease ABC, A sub 100.0 2E-41 6.7E-46 330.1 18.4 199 14-220 335-640 (670)
60 2vf7_A UVRA2, excinuclease ABC 100.0 4.5E-39 1.5E-43 318.1 16.8 207 1-220 503-827 (842)
61 2r6f_A Excinuclease ABC subuni 100.0 1.1E-38 3.8E-43 316.5 17.6 199 15-220 638-942 (972)
62 2ygr_A Uvrabc system protein A 100.0 6.5E-38 2.2E-42 312.0 17.7 198 16-220 657-960 (993)
63 3pih_A Uvrabc system protein A 100.0 3.2E-37 1.1E-41 307.1 22.5 200 14-220 597-902 (916)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.8E-42 6E-47 323.8 -15.7 182 19-218 130-336 (460)
65 4aby_A DNA repair protein RECN 100.0 1.5E-36 5.1E-41 279.1 21.0 196 14-212 48-380 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 3E-33 1E-37 254.6 18.5 84 127-211 274-364 (365)
67 3b85_A Phosphate starvation-in 100.0 1.7E-37 5.9E-42 262.1 -9.5 159 8-208 8-171 (208)
68 1e69_A Chromosome segregation 100.0 1.8E-32 6E-37 245.2 16.4 190 18-209 16-301 (322)
69 4gp7_A Metallophosphoesterase; 100.0 7.5E-33 2.6E-37 226.1 4.2 146 19-196 1-164 (171)
70 1tq4_A IIGP1, interferon-induc 100.0 5.3E-35 1.8E-39 269.5 -12.2 175 14-208 36-255 (413)
71 1znw_A Guanylate kinase, GMP k 100.0 1.3E-35 4.5E-40 249.2 -15.1 175 14-205 9-202 (207)
72 1ye8_A Protein THEP1, hypothet 100.0 2.7E-32 9.3E-37 224.8 2.0 147 29-211 2-159 (178)
73 3b9q_A Chloroplast SRP recepto 100.0 1.6E-32 5.4E-37 243.9 -1.4 175 17-210 90-285 (302)
74 2dpy_A FLII, flagellum-specifi 100.0 1.4E-32 4.8E-37 255.5 -7.8 191 1-218 132-342 (438)
75 2v9p_A Replication protein E1; 100.0 1.3E-34 4.4E-39 257.2 -20.8 163 2-220 103-266 (305)
76 2og2_A Putative signal recogni 100.0 5.8E-31 2E-35 238.6 -0.3 174 18-210 148-342 (359)
77 1z6g_A Guanylate kinase; struc 99.9 6E-33 2.1E-37 235.3 -20.7 177 14-202 10-205 (218)
78 3sop_A Neuronal-specific septi 99.9 1.1E-30 3.9E-35 228.5 -7.4 148 29-192 4-151 (270)
79 3aez_A Pantothenate kinase; tr 99.9 3.8E-32 1.3E-36 242.4 -17.9 157 24-208 87-246 (312)
80 1tf7_A KAIC; homohexamer, hexa 99.9 5.7E-31 2E-35 249.8 -12.1 176 5-207 17-210 (525)
81 2obl_A ESCN; ATPase, hydrolase 99.9 1.7E-29 5.8E-34 228.3 -2.6 191 1-218 46-253 (347)
82 2pt7_A CAG-ALFA; ATPase, prote 99.9 6E-29 2.1E-33 223.4 -0.1 132 16-209 160-292 (330)
83 2o5v_A DNA replication and rep 99.9 1.4E-26 4.9E-31 210.0 14.9 86 127-218 259-354 (359)
84 1cr0_A DNA primase/helicase; R 99.9 5.8E-28 2E-32 212.7 5.5 183 14-209 22-237 (296)
85 3qkt_A DNA double-strand break 99.9 3.9E-26 1.3E-30 205.4 17.3 79 126-205 242-327 (339)
86 2o8b_B DNA mismatch repair pro 99.9 2.7E-28 9.4E-33 246.1 3.3 169 1-215 751-937 (1022)
87 2jeo_A Uridine-cytidine kinase 99.9 4.6E-28 1.6E-32 208.2 0.7 167 13-208 11-180 (245)
88 1tf7_A KAIC; homohexamer, hexa 99.9 2.6E-27 8.8E-32 224.7 5.1 154 21-208 275-444 (525)
89 4ad8_A DNA repair protein RECN 99.9 3.2E-26 1.1E-30 216.8 12.2 79 128-207 392-473 (517)
90 2ehv_A Hypothetical protein PH 99.9 2.9E-28 1E-32 207.8 -1.8 171 16-206 18-207 (251)
91 3pih_A Uvrabc system protein A 99.9 2.9E-26 9.8E-31 228.5 10.7 157 42-219 383-559 (916)
92 2r6f_A Excinuclease ABC subuni 99.9 5.2E-24 1.8E-28 211.8 14.8 129 87-218 450-598 (972)
93 2qnr_A Septin-2, protein NEDD5 99.9 4E-27 1.4E-31 208.9 -7.7 163 4-192 2-168 (301)
94 2eyu_A Twitching motility prot 99.9 1.3E-25 4.6E-30 195.4 1.9 132 15-206 15-147 (261)
95 2vf7_A UVRA2, excinuclease ABC 99.9 1.4E-24 4.9E-29 214.7 8.8 178 35-219 270-474 (842)
96 3thx_A DNA mismatch repair pro 99.9 2.3E-24 8E-29 215.4 10.2 148 14-216 649-809 (934)
97 2ygr_A Uvrabc system protein A 99.9 5.2E-24 1.8E-28 212.4 12.5 132 86-220 466-617 (993)
98 1w1w_A Structural maintenance 99.9 2.3E-23 8E-28 192.8 13.8 77 128-205 329-410 (430)
99 4a74_A DNA repair and recombin 99.9 1.6E-25 5.5E-30 188.5 -0.7 147 23-207 21-200 (231)
100 1ewq_A DNA mismatch repair pro 99.9 7.1E-25 2.4E-29 215.5 2.3 144 14-212 566-716 (765)
101 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 4.7E-23 1.6E-27 164.8 11.2 83 126-209 51-142 (148)
102 3szr_A Interferon-induced GTP- 99.9 3.8E-26 1.3E-30 220.1 -8.2 185 2-216 12-233 (608)
103 3asz_A Uridine kinase; cytidin 99.9 9.6E-27 3.3E-31 194.7 -10.8 144 24-191 3-161 (211)
104 3thx_B DNA mismatch repair pro 99.9 6.4E-24 2.2E-28 211.8 6.5 153 14-211 660-816 (918)
105 1rj9_A FTSY, signal recognitio 99.9 8.8E-25 3E-29 194.2 -0.9 150 26-192 101-259 (304)
106 2w0m_A SSO2452; RECA, SSPF, un 99.9 3.2E-24 1.1E-28 180.3 0.8 170 13-208 8-193 (235)
107 2i3b_A HCR-ntpase, human cance 99.9 5.5E-25 1.9E-29 182.8 -8.1 158 27-212 1-168 (189)
108 1wb9_A DNA mismatch repair pro 99.9 2.3E-23 7.8E-28 205.8 1.3 153 14-213 595-751 (800)
109 1pzn_A RAD51, DNA repair and r 99.9 6.9E-24 2.3E-28 191.7 -2.6 164 14-214 117-309 (349)
110 2qag_C Septin-7; cell cycle, c 99.9 8.4E-24 2.9E-28 195.2 -2.7 163 1-192 12-178 (418)
111 1pui_A ENGB, probable GTP-bind 99.9 5.2E-24 1.8E-28 177.0 -4.4 168 1-179 4-197 (210)
112 1s96_A Guanylate kinase, GMP k 99.9 1.2E-23 4.2E-28 178.5 -3.4 144 21-219 10-159 (219)
113 3jvv_A Twitching mobility prot 99.8 1.9E-22 6.6E-27 182.7 3.9 145 5-207 93-246 (356)
114 1nlf_A Regulatory protein REPA 99.8 1E-20 3.4E-25 165.2 10.6 153 23-195 26-185 (279)
115 2qag_B Septin-6, protein NEDD5 99.8 4.5E-22 1.5E-26 183.6 -3.1 176 2-191 18-219 (427)
116 2bdt_A BH3686; alpha-beta prot 99.8 1.9E-23 6.6E-28 171.8 -11.0 171 27-218 2-182 (189)
117 1lw7_A Transcriptional regulat 99.8 1.2E-24 4.2E-29 197.4 -20.3 173 16-216 157-351 (365)
118 1zp6_A Hypothetical protein AT 99.8 2.5E-23 8.7E-28 170.9 -12.4 149 23-188 5-158 (191)
119 1nij_A Hypothetical protein YJ 99.8 9.4E-24 3.2E-28 188.4 -16.4 159 28-198 5-196 (318)
120 3kta_B Chromosome segregation 99.8 3.2E-19 1.1E-23 146.0 11.6 84 125-209 57-146 (173)
121 2bbw_A Adenylate kinase 4, AK4 99.8 1.9E-22 6.3E-27 173.1 -8.4 142 26-179 26-197 (246)
122 2cvh_A DNA repair and recombin 99.8 4.8E-20 1.6E-24 154.0 5.3 153 14-207 6-185 (220)
123 2ewv_A Twitching motility prot 99.8 1.4E-20 4.8E-25 171.4 1.6 129 16-204 127-256 (372)
124 1n0w_A DNA repair protein RAD5 99.8 6.2E-20 2.1E-24 155.5 3.8 145 23-207 20-209 (243)
125 2qm8_A GTPase/ATPase; G protei 99.8 2.7E-23 9.3E-28 187.0 -17.9 171 2-178 31-258 (337)
126 2gza_A Type IV secretion syste 99.8 7.2E-21 2.5E-25 172.6 -2.7 138 17-209 165-304 (361)
127 2rcn_A Probable GTPase ENGC; Y 99.8 2.4E-19 8.2E-24 162.2 5.8 122 16-147 205-328 (358)
128 3e70_C DPA, signal recognition 99.8 1E-19 3.6E-24 163.0 3.1 165 23-210 125-307 (328)
129 1htw_A HI0065; nucleotide-bind 99.8 9.4E-22 3.2E-26 158.8 -9.7 86 5-97 12-97 (158)
130 2yhs_A FTSY, cell division pro 99.8 4.4E-20 1.5E-24 172.7 -1.2 154 17-189 283-447 (503)
131 2yv5_A YJEQ protein; hydrolase 99.7 4.6E-20 1.6E-24 163.5 -4.1 121 23-145 161-300 (302)
132 1p9r_A General secretion pathw 99.7 4E-21 1.4E-25 177.4 -14.4 146 3-156 146-315 (418)
133 3auy_A DNA double-strand break 99.7 4.6E-17 1.6E-21 147.9 12.3 77 128-205 276-359 (371)
134 1sxj_E Activator 1 40 kDa subu 99.7 3E-17 1E-21 146.8 7.8 138 29-193 38-176 (354)
135 3ec2_A DNA replication protein 99.7 5.4E-18 1.8E-22 138.2 2.2 112 21-193 32-145 (180)
136 2oap_1 GSPE-2, type II secreti 99.7 7.2E-20 2.5E-24 173.0 -10.6 170 15-199 248-458 (511)
137 1in4_A RUVB, holliday junction 99.7 1E-20 3.4E-25 169.6 -16.7 173 3-200 21-211 (334)
138 3lda_A DNA repair protein RAD5 99.7 2.6E-17 9E-22 151.1 4.3 145 23-208 174-364 (400)
139 2f1r_A Molybdopterin-guanine d 99.7 3.7E-19 1.3E-23 145.4 -7.8 136 28-181 3-163 (171)
140 1udx_A The GTP-binding protein 99.7 2.1E-17 7.1E-22 152.4 2.5 152 17-195 147-313 (416)
141 1sq5_A Pantothenate kinase; P- 99.6 6.2E-19 2.1E-23 156.4 -8.4 138 1-165 38-199 (308)
142 1u0l_A Probable GTPase ENGC; p 99.6 2.5E-18 8.6E-23 152.1 -5.1 110 22-135 164-294 (301)
143 2kjq_A DNAA-related protein; s 99.6 1.7E-16 5.9E-21 126.5 5.7 91 16-190 30-124 (149)
144 1ni3_A YCHF GTPase, YCHF GTP-b 99.6 3.6E-19 1.2E-23 162.9 -11.7 168 23-215 16-208 (392)
145 1odf_A YGR205W, hypothetical 3 99.6 8.5E-18 2.9E-22 148.2 -3.3 126 25-166 29-168 (290)
146 2x8a_A Nuclear valosin-contain 99.6 1.1E-19 3.7E-24 159.0 -17.2 145 14-176 33-191 (274)
147 1t9h_A YLOQ, probable GTPase E 99.6 1.3E-17 4.5E-22 148.0 -4.8 118 22-140 168-303 (307)
148 1lvg_A Guanylate kinase, GMP k 99.6 5.7E-20 1.9E-24 153.1 -21.6 153 25-206 2-173 (198)
149 1ls1_A Signal recognition part 99.5 1.2E-14 4.2E-19 128.2 8.0 139 4-188 80-219 (295)
150 3tr0_A Guanylate kinase, GMP k 99.5 6.4E-16 2.2E-20 127.7 -1.3 126 21-159 1-127 (205)
151 2dr3_A UPF0273 protein PH0284; 99.5 1.6E-15 5.4E-20 128.4 0.8 172 14-206 9-196 (247)
152 3c8u_A Fructokinase; YP_612366 99.5 5.4E-17 1.9E-21 135.6 -8.8 140 24-200 19-168 (208)
153 3lnc_A Guanylate kinase, GMP k 99.5 4.8E-19 1.6E-23 150.2 -22.4 184 14-208 14-212 (231)
154 1vma_A Cell division protein F 99.5 2.2E-14 7.4E-19 127.3 5.7 99 19-161 96-197 (306)
155 2px0_A Flagellar biosynthesis 99.5 1E-13 3.5E-18 122.3 9.0 139 25-211 103-246 (296)
156 2ius_A DNA translocase FTSK; n 99.4 4.6E-15 1.6E-19 139.7 -3.4 174 19-203 159-361 (512)
157 1iy2_A ATP-dependent metallopr 99.4 3.7E-18 1.3E-22 148.7 -23.0 135 5-159 54-194 (278)
158 3euj_A Chromosome partition pr 99.4 4.1E-14 1.4E-18 132.4 2.7 60 3-66 9-68 (483)
159 2zr9_A Protein RECA, recombina 99.4 4.4E-13 1.5E-17 120.9 8.5 145 23-214 57-237 (349)
160 2r6a_A DNAB helicase, replicat 99.4 1.6E-13 5.6E-18 127.6 5.4 180 14-210 190-402 (454)
161 1ixz_A ATP-dependent metallopr 99.4 1.2E-17 4.1E-22 143.3 -21.1 151 5-175 30-198 (254)
162 1qhl_A Protein (cell division 99.3 1.9E-14 6.6E-19 122.4 -5.8 61 21-82 22-91 (227)
163 3k1j_A LON protease, ATP-depen 99.3 2E-14 7E-19 138.2 -7.6 157 14-177 47-227 (604)
164 1oix_A RAS-related protein RAB 99.3 3.2E-13 1.1E-17 110.7 -0.9 134 29-177 31-188 (191)
165 2f9l_A RAB11B, member RAS onco 99.2 3.8E-13 1.3E-17 110.7 -4.9 36 141-178 130-165 (199)
166 2qtf_A Protein HFLX, GTP-bindi 99.1 3.5E-12 1.2E-16 115.6 -0.3 137 29-178 181-351 (364)
167 4eun_A Thermoresistant glucoki 99.1 2.8E-12 9.6E-17 106.1 -1.6 78 16-97 18-95 (200)
168 3hr8_A Protein RECA; alpha and 99.1 7.5E-11 2.6E-15 106.5 7.0 147 23-207 57-230 (356)
169 1svm_A Large T antigen; AAA+ f 99.1 1.2E-13 4.1E-18 125.7 -12.0 138 15-161 157-312 (377)
170 4e22_A Cytidylate kinase; P-lo 99.0 3.5E-11 1.2E-15 103.3 -0.1 66 15-83 18-96 (252)
171 3cr8_A Sulfate adenylyltranfer 99.0 9.5E-12 3.3E-16 118.4 -4.6 43 23-65 365-409 (552)
172 3kta_A Chromosome segregation 99.0 2.2E-10 7.6E-15 92.7 3.7 148 2-177 3-168 (182)
173 1zu4_A FTSY; GTPase, signal re 99.0 1.1E-10 3.6E-15 104.1 1.6 80 17-96 95-185 (320)
174 3nwj_A ATSK2; P loop, shikimat 99.0 3.7E-11 1.3E-15 103.5 -1.3 51 1-51 18-72 (250)
175 1jjv_A Dephospho-COA kinase; P 99.0 5.2E-11 1.8E-15 98.4 -0.5 127 29-206 4-132 (206)
176 2e87_A Hypothetical protein PH 99.0 6.5E-10 2.2E-14 100.1 6.2 126 26-193 166-294 (357)
177 2xau_A PRE-mRNA-splicing facto 98.9 7.3E-10 2.5E-14 109.4 6.8 74 127-200 185-261 (773)
178 2dhr_A FTSH; AAA+ protein, hex 98.9 7.2E-12 2.4E-16 117.9 -7.4 129 14-161 53-187 (499)
179 2j41_A Guanylate kinase; GMP, 98.9 2.8E-10 9.5E-15 93.6 2.9 60 22-84 1-61 (207)
180 2ce7_A Cell division protein F 98.9 2.9E-09 9.8E-14 99.6 8.6 114 15-194 39-167 (476)
181 3uie_A Adenylyl-sulfate kinase 98.9 5.5E-11 1.9E-15 98.2 -3.6 61 4-66 3-65 (200)
182 3a00_A Guanylate kinase, GMP k 98.8 4.4E-10 1.5E-14 91.7 1.0 33 27-59 1-33 (186)
183 1fnn_A CDC6P, cell division co 98.8 9.5E-09 3.2E-13 92.0 6.7 49 149-198 124-176 (389)
184 3t34_A Dynamin-related protein 98.7 5.6E-11 1.9E-15 107.1 -8.2 172 14-189 24-212 (360)
185 2dy1_A Elongation factor G; tr 98.7 2.9E-09 1E-13 103.4 3.3 132 21-193 3-138 (665)
186 1knq_A Gluconate kinase; ALFA/ 98.7 4.7E-10 1.6E-14 90.2 -2.6 38 25-66 6-43 (175)
187 4a1f_A DNAB helicase, replicat 98.7 2.2E-08 7.5E-13 89.7 6.6 107 14-162 33-139 (338)
188 3kl4_A SRP54, signal recogniti 98.6 1E-07 3.5E-12 88.0 9.9 124 26-190 96-223 (433)
189 1kgd_A CASK, peripheral plasma 98.6 9.1E-09 3.1E-13 83.5 2.3 37 25-61 3-40 (180)
190 2www_A Methylmalonic aciduria 98.6 7.8E-09 2.7E-13 92.9 0.8 42 25-66 72-113 (349)
191 2vp4_A Deoxynucleoside kinase; 98.6 1.3E-08 4.4E-13 85.9 2.0 42 20-65 13-54 (230)
192 3vaa_A Shikimate kinase, SK; s 98.6 2.8E-08 9.5E-13 81.7 3.7 38 14-51 12-49 (199)
193 1rz3_A Hypothetical protein rb 98.5 1.1E-08 3.8E-13 84.5 0.6 43 23-65 18-60 (201)
194 1sxj_C Activator 1 40 kDa subu 98.5 5.7E-11 1.9E-15 105.9 -14.4 48 14-61 31-80 (340)
195 1cke_A CK, MSSA, protein (cyti 98.5 6.4E-09 2.2E-13 86.7 -2.4 57 27-83 5-74 (227)
196 3tqc_A Pantothenate kinase; bi 98.5 1E-08 3.4E-13 91.3 -1.3 53 7-60 67-127 (321)
197 3tau_A Guanylate kinase, GMP k 98.5 7.3E-08 2.5E-12 79.9 3.7 36 25-60 6-42 (208)
198 1ega_A Protein (GTP-binding pr 98.5 8.3E-09 2.8E-13 90.8 -2.4 150 26-201 7-169 (301)
199 3ney_A 55 kDa erythrocyte memb 98.4 5.2E-08 1.8E-12 80.9 2.2 32 21-52 13-44 (197)
200 2z43_A DNA repair and recombin 98.4 2E-07 6.8E-12 82.7 5.8 28 23-50 103-130 (324)
201 1v5w_A DMC1, meiotic recombina 98.4 8.3E-08 2.8E-12 85.9 3.1 28 23-50 118-145 (343)
202 2qby_A CDC6 homolog 1, cell di 98.4 6.2E-08 2.1E-12 86.2 1.8 29 25-53 43-71 (386)
203 2p67_A LAO/AO transport system 98.4 2.5E-09 8.5E-14 95.8 -7.4 60 6-66 36-95 (341)
204 2qt1_A Nicotinamide riboside k 98.4 2E-07 6.9E-12 76.8 4.5 33 20-52 14-46 (207)
205 2z4s_A Chromosomal replication 98.3 5.3E-07 1.8E-11 83.3 6.5 67 149-215 193-263 (440)
206 3bh0_A DNAB-like replicative h 98.3 8.5E-07 2.9E-11 78.4 7.2 131 14-189 55-189 (315)
207 3b9p_A CG5977-PA, isoform A; A 98.3 1.3E-06 4.4E-11 75.7 8.2 71 135-205 98-187 (297)
208 3lxx_A GTPase IMAP family memb 98.3 4.9E-06 1.7E-10 69.9 11.1 41 149-189 111-154 (239)
209 1f2t_A RAD50 ABC-ATPase; DNA d 98.3 9.3E-07 3.2E-11 69.8 5.7 44 2-49 2-45 (149)
210 2ffh_A Protein (FFH); SRP54, s 98.3 7.8E-06 2.7E-10 75.3 12.4 57 6-67 82-138 (425)
211 3m6a_A ATP-dependent protease 98.3 1.2E-07 4.2E-12 90.0 0.2 50 14-64 96-145 (543)
212 1ypw_A Transitional endoplasmi 98.2 8.4E-07 2.9E-11 87.9 5.9 33 21-53 232-264 (806)
213 1kag_A SKI, shikimate kinase I 98.2 3.3E-07 1.1E-11 72.9 2.5 33 26-62 3-35 (173)
214 1u94_A RECA protein, recombina 98.2 5.4E-06 1.8E-10 74.6 9.6 28 23-50 59-86 (356)
215 1mky_A Probable GTP-binding pr 98.2 1E-06 3.5E-11 81.2 4.1 159 29-194 182-368 (439)
216 4fcw_A Chaperone protein CLPB; 98.1 1E-06 3.5E-11 76.6 3.6 44 15-58 24-78 (311)
217 3ice_A Transcription terminati 98.1 3.5E-07 1.2E-11 83.2 0.6 50 2-51 135-198 (422)
218 2pez_A Bifunctional 3'-phospho 98.1 4.7E-07 1.6E-11 72.8 1.1 40 25-65 3-44 (179)
219 1j8m_F SRP54, signal recogniti 98.1 1.1E-05 3.8E-10 70.8 9.8 49 18-67 89-138 (297)
220 3cf0_A Transitional endoplasmi 98.1 9.8E-06 3.3E-10 70.8 8.8 30 22-51 44-73 (301)
221 1f6b_A SAR1; gtpases, N-termin 98.1 7.8E-07 2.7E-11 72.7 1.6 42 7-49 6-47 (198)
222 4eaq_A DTMP kinase, thymidylat 98.1 9.3E-07 3.2E-11 74.6 2.0 45 16-61 12-59 (229)
223 3qks_A DNA double-strand break 98.1 4.5E-06 1.5E-10 69.1 5.7 43 1-48 1-44 (203)
224 2q6t_A DNAB replication FORK h 98.1 2.1E-05 7.3E-10 72.5 10.7 176 14-206 187-397 (444)
225 1sxj_D Activator 1 41 kDa subu 98.0 5.4E-08 1.8E-12 86.1 -7.9 42 150-192 133-174 (353)
226 1m7g_A Adenylylsulfate kinase; 98.0 9.9E-07 3.4E-11 73.0 0.2 43 22-64 20-64 (211)
227 3llm_A ATP-dependent RNA helic 98.0 3.4E-07 1.2E-11 77.2 -2.9 145 24-198 73-227 (235)
228 2qag_A Septin-2, protein NEDD5 98.0 6.4E-07 2.2E-11 80.7 -1.4 54 2-62 19-72 (361)
229 2gj8_A MNME, tRNA modification 97.9 9.3E-06 3.2E-10 64.6 5.2 27 25-51 2-28 (172)
230 1m2o_B GTP-binding protein SAR 97.9 8.6E-06 2.9E-10 65.9 4.7 34 15-49 12-45 (190)
231 3k53_A Ferrous iron transport 97.9 9.8E-07 3.4E-11 76.0 -1.4 47 159-205 144-192 (271)
232 1l8q_A Chromosomal replication 97.9 2.7E-05 9.3E-10 68.3 7.5 41 149-189 97-139 (324)
233 2w58_A DNAI, primosome compone 97.9 1.5E-05 5.3E-10 64.9 5.5 25 28-52 55-79 (202)
234 3bos_A Putative DNA replicatio 97.8 6.7E-06 2.3E-10 68.1 2.9 26 26-51 51-76 (242)
235 1y63_A LMAJ004144AAA protein; 97.8 9.7E-06 3.3E-10 65.5 3.2 32 19-50 2-33 (184)
236 1njg_A DNA polymerase III subu 97.8 3.9E-05 1.3E-09 62.8 7.0 44 149-193 125-168 (250)
237 2yvu_A Probable adenylyl-sulfa 97.8 4.7E-06 1.6E-10 67.3 1.2 38 22-59 8-45 (186)
238 2wji_A Ferrous iron transport 97.8 3.2E-05 1.1E-09 60.9 5.7 24 29-52 5-28 (165)
239 3auy_A DNA double-strand break 97.8 2.3E-05 7.9E-10 70.6 5.4 42 2-48 4-46 (371)
240 2if2_A Dephospho-COA kinase; a 97.8 1E-05 3.5E-10 66.1 2.8 22 29-50 3-24 (204)
241 2ohf_A Protein OLA1, GTP-bindi 97.8 1.5E-05 5.2E-10 72.6 4.1 41 23-63 18-69 (396)
242 2wjg_A FEOB, ferrous iron tran 97.7 2E-05 6.8E-10 62.9 4.3 22 29-50 9-30 (188)
243 3t61_A Gluconokinase; PSI-biol 97.7 3.4E-06 1.2E-10 69.0 -0.9 35 27-65 18-52 (202)
244 2qor_A Guanylate kinase; phosp 97.7 1.7E-05 5.9E-10 65.1 3.1 29 24-52 9-37 (204)
245 2v1u_A Cell division control p 97.7 5.3E-05 1.8E-09 67.1 6.3 27 25-51 42-68 (387)
246 2i1q_A DNA repair and recombin 97.7 3.2E-05 1.1E-09 68.1 4.5 27 23-49 94-120 (322)
247 3h4m_A Proteasome-activating n 97.7 0.00016 5.5E-09 61.9 8.8 28 24-51 48-75 (285)
248 1xp8_A RECA protein, recombina 97.6 0.00026 8.8E-09 63.9 10.4 27 23-49 70-96 (366)
249 2zej_A Dardarin, leucine-rich 97.6 3.5E-05 1.2E-09 61.7 3.3 26 29-54 4-29 (184)
250 2ga8_A Hypothetical 39.9 kDa p 97.6 8.6E-06 2.9E-10 73.2 -0.7 37 15-51 10-48 (359)
251 3n70_A Transport activator; si 97.5 0.00033 1.1E-08 54.2 8.2 43 150-193 76-119 (145)
252 3cm0_A Adenylate kinase; ATP-b 97.5 4.1E-05 1.4E-09 61.3 3.1 25 25-49 2-26 (186)
253 1np6_A Molybdopterin-guanine d 97.5 3E-05 1E-09 62.8 2.1 37 28-64 7-46 (174)
254 1q3t_A Cytidylate kinase; nucl 97.5 5.3E-05 1.8E-09 63.6 3.2 26 24-49 13-38 (236)
255 2p5t_B PEZT; postsegregational 97.4 2.8E-05 9.5E-10 66.2 1.0 46 17-65 23-68 (253)
256 3cmw_A Protein RECA, recombina 97.4 0.00029 9.8E-09 74.5 8.8 30 23-52 728-757 (1706)
257 3r20_A Cytidylate kinase; stru 97.4 2.8E-05 9.7E-10 65.9 0.5 23 27-49 9-31 (233)
258 1lv7_A FTSH; alpha/beta domain 97.4 5.4E-05 1.9E-09 64.1 2.0 35 16-52 36-70 (257)
259 3kb2_A SPBC2 prophage-derived 97.4 9.5E-05 3.3E-09 58.1 3.3 23 29-51 3-25 (173)
260 2b8t_A Thymidine kinase; deoxy 97.3 0.00029 1E-08 59.2 6.1 52 149-205 88-150 (223)
261 3dm5_A SRP54, signal recogniti 97.3 0.0023 7.8E-08 59.1 12.4 28 26-53 99-126 (443)
262 1qhx_A CPT, protein (chloramph 97.3 0.00013 4.6E-09 57.8 3.7 26 27-52 3-28 (178)
263 4ag6_A VIRB4 ATPase, type IV s 97.3 5.7E-05 2E-09 68.2 1.1 59 149-207 261-335 (392)
264 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.001 3.5E-08 55.8 8.8 26 25-50 37-62 (262)
265 1kht_A Adenylate kinase; phosp 97.3 0.00017 5.7E-09 57.7 3.6 24 27-50 3-26 (192)
266 1q57_A DNA primase/helicase; d 97.3 0.0036 1.2E-07 58.3 13.2 34 16-49 231-264 (503)
267 2chg_A Replication factor C sm 97.2 0.00053 1.8E-08 55.3 6.6 43 149-192 101-143 (226)
268 3zvl_A Bifunctional polynucleo 97.2 0.0018 6.3E-08 59.1 10.7 26 24-49 255-280 (416)
269 3lw7_A Adenylate kinase relate 97.2 0.00018 6.1E-09 56.3 3.3 19 29-47 3-21 (179)
270 1vht_A Dephospho-COA kinase; s 97.2 0.0002 6.8E-09 59.0 3.6 24 26-49 3-26 (218)
271 2rhm_A Putative kinase; P-loop 97.2 0.00017 5.9E-09 57.8 3.1 26 25-50 3-28 (193)
272 3d8b_A Fidgetin-like protein 1 97.2 0.0013 4.4E-08 58.7 9.0 27 25-51 115-141 (357)
273 1gtv_A TMK, thymidylate kinase 97.2 4.8E-05 1.6E-09 62.2 -0.3 30 29-58 2-31 (214)
274 1jal_A YCHF protein; nucleotid 97.2 0.00024 8.4E-09 63.9 4.3 36 27-62 2-48 (363)
275 3syl_A Protein CBBX; photosynt 97.2 0.0029 1E-07 54.4 10.9 41 150-190 130-178 (309)
276 3ihw_A Centg3; RAS, centaurin, 97.2 0.00046 1.6E-08 55.2 5.3 35 29-63 22-65 (184)
277 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00061 2.1E-08 60.4 6.4 28 22-49 118-145 (331)
278 2ze6_A Isopentenyl transferase 97.2 0.00021 7.3E-09 60.8 3.3 24 28-51 2-25 (253)
279 2jaq_A Deoxyguanosine kinase; 97.1 0.00023 7.9E-09 57.4 3.4 23 29-51 2-24 (205)
280 1via_A Shikimate kinase; struc 97.1 0.0002 7E-09 56.9 2.8 23 29-51 6-28 (175)
281 3cmu_A Protein RECA, recombina 97.1 0.0011 3.9E-08 70.9 9.0 27 24-50 380-406 (2050)
282 3iij_A Coilin-interacting nucl 97.1 0.00015 5.1E-09 57.9 1.9 25 25-49 9-33 (180)
283 1ex7_A Guanylate kinase; subst 97.1 0.00025 8.4E-09 58.0 3.1 21 30-50 4-24 (186)
284 3trf_A Shikimate kinase, SK; a 97.1 0.00032 1.1E-08 56.0 3.5 25 26-50 4-28 (185)
285 2v54_A DTMP kinase, thymidylat 97.1 0.00033 1.1E-08 56.7 3.7 26 26-51 3-28 (204)
286 1ly1_A Polynucleotide kinase; 97.1 0.00031 1E-08 55.5 3.4 22 28-49 3-24 (181)
287 1uf9_A TT1252 protein; P-loop, 97.1 0.00031 1.1E-08 56.7 3.4 32 27-63 8-39 (203)
288 3bgw_A DNAB-like replicative h 97.1 0.0024 8.4E-08 58.8 9.7 35 15-49 185-219 (444)
289 3io5_A Recombination and repai 97.0 0.00059 2E-08 60.4 5.2 26 24-50 26-52 (333)
290 1fzq_A ADP-ribosylation factor 97.0 0.0003 1E-08 56.1 2.9 24 28-51 17-40 (181)
291 2plr_A DTMP kinase, probable t 97.0 0.00039 1.3E-08 56.4 3.6 27 26-52 3-29 (213)
292 2wwf_A Thymidilate kinase, put 97.0 0.00039 1.3E-08 56.6 3.6 25 25-49 8-32 (212)
293 1gvn_B Zeta; postsegregational 97.0 0.00032 1.1E-08 60.9 3.2 37 24-62 30-66 (287)
294 2c95_A Adenylate kinase 1; tra 97.0 0.00036 1.2E-08 56.0 3.3 26 25-50 7-32 (196)
295 1tev_A UMP-CMP kinase; ploop, 97.0 0.00042 1.4E-08 55.4 3.5 23 27-49 3-25 (196)
296 4dcu_A GTP-binding protein ENG 97.0 0.00095 3.3E-08 61.6 6.3 56 136-194 88-144 (456)
297 1nn5_A Similar to deoxythymidy 97.0 0.00045 1.5E-08 56.3 3.5 27 24-50 6-32 (215)
298 1nks_A Adenylate kinase; therm 96.9 0.00047 1.6E-08 55.0 3.2 23 29-51 3-25 (194)
299 3ake_A Cytidylate kinase; CMP 96.9 0.00049 1.7E-08 55.8 3.3 23 29-51 4-26 (208)
300 2vli_A Antibiotic resistance p 96.9 0.00035 1.2E-08 55.5 2.3 25 26-50 4-28 (183)
301 2z0h_A DTMP kinase, thymidylat 96.9 0.00051 1.8E-08 55.1 3.3 23 29-51 2-24 (197)
302 3co5_A Putative two-component 96.9 0.0014 4.8E-08 50.5 5.5 39 150-189 75-114 (143)
303 1xjc_A MOBB protein homolog; s 96.9 0.0006 2E-08 54.9 3.4 25 28-52 5-29 (169)
304 2r8r_A Sensor protein; KDPD, P 96.8 6.6E-05 2.3E-09 63.3 -2.7 45 145-189 79-125 (228)
305 3cmw_A Protein RECA, recombina 96.8 0.0028 9.4E-08 67.1 8.8 26 24-49 380-405 (1706)
306 1jr3_A DNA polymerase III subu 96.8 0.0016 5.4E-08 57.5 6.2 42 150-192 119-160 (373)
307 1ko7_A HPR kinase/phosphatase; 96.8 0.0011 3.7E-08 58.5 4.9 48 14-62 132-183 (314)
308 3u61_B DNA polymerase accessor 96.8 0.0071 2.4E-07 52.5 10.1 42 150-192 105-147 (324)
309 2bwj_A Adenylate kinase 5; pho 96.8 0.00074 2.5E-08 54.3 3.4 28 24-51 9-36 (199)
310 2ged_A SR-beta, signal recogni 96.8 0.00057 2E-08 54.5 2.7 25 28-52 49-73 (193)
311 3b1v_A Ferrous iron uptake tra 96.8 0.00073 2.5E-08 58.3 3.5 23 29-51 5-27 (272)
312 1aky_A Adenylate kinase; ATP:A 96.8 0.00084 2.9E-08 55.3 3.7 26 26-51 3-28 (220)
313 3q72_A GTP-binding protein RAD 96.8 0.00066 2.2E-08 52.5 2.8 23 29-51 4-26 (166)
314 1qvr_A CLPB protein; coiled co 96.8 0.0013 4.3E-08 65.5 5.4 26 28-53 589-614 (854)
315 3cbq_A GTP-binding protein REM 96.7 0.00078 2.7E-08 54.5 3.2 22 29-50 25-46 (195)
316 1zd8_A GTP:AMP phosphotransfer 96.7 0.00083 2.8E-08 55.7 3.5 26 25-50 5-30 (227)
317 2nzj_A GTP-binding protein REM 96.7 0.00083 2.8E-08 52.3 3.3 23 29-51 6-28 (175)
318 2pbr_A DTMP kinase, thymidylat 96.7 0.00084 2.9E-08 53.6 3.3 22 29-50 2-23 (195)
319 2erx_A GTP-binding protein DI- 96.7 0.00086 3E-08 51.9 3.3 22 29-50 5-26 (172)
320 3fb4_A Adenylate kinase; psych 96.7 0.00085 2.9E-08 54.9 3.3 21 29-49 2-22 (216)
321 1e6c_A Shikimate kinase; phosp 96.7 0.00075 2.6E-08 53.0 2.8 23 28-50 3-25 (173)
322 1zuh_A Shikimate kinase; alpha 96.7 0.00099 3.4E-08 52.4 3.4 22 28-49 8-29 (168)
323 3q85_A GTP-binding protein REM 96.7 0.00092 3.1E-08 51.8 3.2 22 30-51 5-26 (169)
324 1z2a_A RAS-related protein RAB 96.7 0.00074 2.5E-08 52.1 2.6 22 29-50 7-28 (168)
325 2cdn_A Adenylate kinase; phosp 96.7 0.0011 3.7E-08 53.8 3.7 25 26-50 19-43 (201)
326 2pt5_A Shikimate kinase, SK; a 96.7 0.00099 3.4E-08 52.1 3.4 22 29-50 2-23 (168)
327 3tw8_B RAS-related protein RAB 96.7 0.00087 3E-08 52.4 3.0 23 29-51 11-33 (181)
328 1qf9_A UMP/CMP kinase, protein 96.7 0.00092 3.1E-08 53.2 3.2 24 27-50 6-29 (194)
329 3iby_A Ferrous iron transport 96.7 0.0011 3.8E-08 56.5 3.8 23 29-51 3-25 (256)
330 2ce2_X GTPase HRAS; signaling 96.7 0.00077 2.6E-08 51.6 2.5 22 29-50 5-26 (166)
331 1zak_A Adenylate kinase; ATP:A 96.7 0.00085 2.9E-08 55.4 2.9 25 26-50 4-28 (222)
332 1ukz_A Uridylate kinase; trans 96.7 0.001 3.5E-08 53.9 3.3 25 26-50 14-38 (203)
333 2dby_A GTP-binding protein; GD 96.7 0.00085 2.9E-08 60.5 3.1 21 30-50 4-24 (368)
334 3euj_A Chromosome partition pr 96.6 0.003 1E-07 58.9 6.8 75 126-205 373-464 (483)
335 2dyk_A GTP-binding protein; GT 96.6 0.00085 2.9E-08 51.5 2.7 23 29-51 3-25 (161)
336 3dl0_A Adenylate kinase; phosp 96.6 0.001 3.5E-08 54.5 3.3 21 29-49 2-22 (216)
337 1kao_A RAP2A; GTP-binding prot 96.6 0.00086 3E-08 51.5 2.7 22 29-50 5-26 (167)
338 1svi_A GTP-binding protein YSX 96.6 0.0009 3.1E-08 53.3 2.9 24 28-51 24-47 (195)
339 1u8z_A RAS-related protein RAL 96.6 0.00089 3E-08 51.5 2.6 22 29-50 6-27 (168)
340 1z0j_A RAB-22, RAS-related pro 96.6 0.0009 3.1E-08 51.7 2.7 23 29-51 8-30 (170)
341 1moz_A ARL1, ADP-ribosylation 96.6 0.00064 2.2E-08 53.6 1.8 24 26-49 17-40 (183)
342 2grj_A Dephospho-COA kinase; T 96.6 0.0011 3.8E-08 54.2 3.3 24 27-50 12-35 (192)
343 3pqc_A Probable GTP-binding pr 96.6 0.00097 3.3E-08 52.9 2.9 23 29-51 25-47 (195)
344 3lxw_A GTPase IMAP family memb 96.6 0.001 3.6E-08 56.2 3.2 24 29-52 23-46 (247)
345 1z08_A RAS-related protein RAB 96.6 0.00095 3.2E-08 51.7 2.7 22 29-50 8-29 (170)
346 2lkc_A Translation initiation 96.6 0.0014 4.9E-08 51.1 3.8 25 26-50 7-31 (178)
347 2cxx_A Probable GTP-binding pr 96.6 0.001 3.5E-08 52.6 2.9 22 30-51 4-25 (190)
348 1uj2_A Uridine-cytidine kinase 96.6 0.0011 3.9E-08 55.9 3.3 23 28-50 23-45 (252)
349 2iyv_A Shikimate kinase, SK; t 96.6 0.00096 3.3E-08 53.2 2.7 23 28-50 3-25 (184)
350 1ek0_A Protein (GTP-binding pr 96.6 0.00095 3.3E-08 51.5 2.6 23 29-51 5-27 (170)
351 1g16_A RAS-related protein SEC 96.6 0.00091 3.1E-08 51.7 2.5 23 29-51 5-27 (170)
352 1ky3_A GTP-binding protein YPT 96.6 0.00099 3.4E-08 52.1 2.7 23 29-51 10-32 (182)
353 1c1y_A RAS-related protein RAP 96.6 0.00099 3.4E-08 51.4 2.6 22 29-50 5-26 (167)
354 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0013 4.5E-08 55.9 3.6 25 26-50 3-27 (260)
355 1wms_A RAB-9, RAB9, RAS-relate 96.6 0.001 3.5E-08 51.9 2.7 22 29-50 9-30 (177)
356 2fn4_A P23, RAS-related protei 96.5 0.001 3.5E-08 52.0 2.5 22 29-50 11-32 (181)
357 1wf3_A GTP-binding protein; GT 96.5 0.0013 4.6E-08 57.4 3.4 22 29-50 9-30 (301)
358 1sxj_B Activator 1 37 kDa subu 96.5 0.0031 1E-07 54.3 5.6 42 150-192 107-148 (323)
359 4dsu_A GTPase KRAS, isoform 2B 96.5 0.0012 4.1E-08 52.1 2.7 23 29-51 6-28 (189)
360 2xb4_A Adenylate kinase; ATP-b 96.5 0.0015 5.1E-08 54.2 3.4 22 29-50 2-23 (223)
361 2hxs_A RAB-26, RAS-related pro 96.5 0.0014 4.9E-08 51.2 3.1 23 29-51 8-30 (178)
362 1r2q_A RAS-related protein RAB 96.5 0.0012 4.2E-08 50.9 2.6 22 29-50 8-29 (170)
363 3clv_A RAB5 protein, putative; 96.5 0.0012 4.2E-08 52.3 2.7 23 29-51 9-31 (208)
364 2f6r_A COA synthase, bifunctio 96.5 0.0014 4.9E-08 56.5 3.2 23 27-49 75-97 (281)
365 1a7j_A Phosphoribulokinase; tr 96.5 0.0007 2.4E-08 58.9 1.3 26 26-51 4-29 (290)
366 2oil_A CATX-8, RAS-related pro 96.5 0.0012 4.2E-08 52.6 2.6 23 29-51 27-49 (193)
367 1upt_A ARL1, ADP-ribosylation 96.5 0.0013 4.4E-08 51.0 2.6 21 29-49 9-29 (171)
368 3bc1_A RAS-related protein RAB 96.5 0.0013 4.4E-08 52.0 2.6 22 29-50 13-34 (195)
369 3tlx_A Adenylate kinase 2; str 96.5 0.0017 5.8E-08 54.7 3.5 25 25-49 27-51 (243)
370 3t1o_A Gliding protein MGLA; G 96.4 0.0014 4.7E-08 52.0 2.7 24 29-52 16-39 (198)
371 3iev_A GTP-binding protein ERA 96.4 0.0016 5.6E-08 56.9 3.4 23 29-51 12-34 (308)
372 3t5d_A Septin-7; GTP-binding p 96.4 0.0014 4.7E-08 56.1 2.9 23 29-51 10-32 (274)
373 1r8s_A ADP-ribosylation factor 96.4 0.0014 4.8E-08 50.5 2.6 20 30-49 3-22 (164)
374 2y8e_A RAB-protein 6, GH09086P 96.4 0.0014 4.6E-08 51.2 2.5 22 29-50 16-37 (179)
375 2a9k_A RAS-related protein RAL 96.4 0.0015 5E-08 51.4 2.6 22 29-50 20-41 (187)
376 3hu3_A Transitional endoplasmi 96.4 0.0052 1.8E-07 57.3 6.8 28 24-51 235-262 (489)
377 1z0f_A RAB14, member RAS oncog 96.4 0.0015 5.1E-08 50.9 2.6 23 29-51 17-39 (179)
378 2g6b_A RAS-related protein RAB 96.4 0.0015 5.1E-08 51.1 2.6 23 29-51 12-34 (180)
379 3con_A GTPase NRAS; structural 96.4 0.0015 5.2E-08 51.8 2.6 22 29-50 23-44 (190)
380 2xtp_A GTPase IMAP family memb 96.4 0.0017 6E-08 54.7 3.1 23 29-51 24-46 (260)
381 1ksh_A ARF-like protein 2; sma 96.4 0.0019 6.3E-08 51.1 3.1 26 26-51 17-42 (186)
382 2qmh_A HPR kinase/phosphorylas 96.3 0.0038 1.3E-07 51.6 4.8 36 14-50 22-57 (205)
383 2bme_A RAB4A, RAS-related prot 96.3 0.0016 5.4E-08 51.4 2.5 22 29-50 12-33 (186)
384 2efe_B Small GTP-binding prote 96.3 0.0017 5.8E-08 50.9 2.7 23 29-51 14-36 (181)
385 3cnl_A YLQF, putative uncharac 96.3 0.0024 8.3E-08 54.7 3.7 30 28-57 100-129 (262)
386 1nrj_B SR-beta, signal recogni 96.3 0.0017 5.7E-08 52.9 2.6 23 29-51 14-36 (218)
387 2bov_A RAla, RAS-related prote 96.3 0.0017 5.9E-08 52.0 2.6 22 29-50 16-37 (206)
388 1vg8_A RAS-related protein RAB 96.3 0.0018 6.1E-08 52.1 2.7 23 29-51 10-32 (207)
389 1e4v_A Adenylate kinase; trans 96.3 0.0021 7.3E-08 52.7 3.2 21 29-49 2-22 (214)
390 3a1s_A Iron(II) transport prot 96.3 0.0021 7.2E-08 54.7 3.3 23 29-51 7-29 (258)
391 1m7b_A RND3/RHOE small GTP-bin 96.3 0.0017 5.8E-08 51.5 2.5 22 29-50 9-30 (184)
392 2gf0_A GTP-binding protein DI- 96.3 0.0017 5.9E-08 51.7 2.5 22 29-50 10-31 (199)
393 4dhe_A Probable GTP-binding pr 96.3 0.0012 3.9E-08 54.0 1.5 24 28-51 30-53 (223)
394 3be4_A Adenylate kinase; malar 96.3 0.0024 8.1E-08 52.6 3.4 26 26-51 4-29 (217)
395 4edh_A DTMP kinase, thymidylat 96.3 0.0025 8.7E-08 52.9 3.6 28 25-52 4-31 (213)
396 3i8s_A Ferrous iron transport 96.3 0.0021 7.1E-08 55.2 3.1 23 29-51 5-27 (274)
397 2il1_A RAB12; G-protein, GDP, 96.3 0.0021 7E-08 51.5 2.9 23 29-51 28-50 (192)
398 1ltq_A Polynucleotide kinase; 96.3 0.0023 7.8E-08 55.1 3.4 22 28-49 3-24 (301)
399 2gf9_A RAS-related protein RAB 96.3 0.0019 6.4E-08 51.4 2.6 23 29-51 24-46 (189)
400 1zbd_A Rabphilin-3A; G protein 96.3 0.0023 7.9E-08 51.4 3.2 23 29-51 10-32 (203)
401 2h57_A ADP-ribosylation factor 96.3 0.0017 5.9E-08 51.7 2.4 24 28-51 22-45 (190)
402 2fg5_A RAB-22B, RAS-related pr 96.3 0.0018 6.3E-08 51.7 2.5 23 29-51 25-47 (192)
403 1jbk_A CLPB protein; beta barr 96.3 0.0028 9.6E-08 49.7 3.6 27 25-51 41-67 (195)
404 2orv_A Thymidine kinase; TP4A 96.3 0.0098 3.3E-07 50.2 7.0 52 149-205 89-150 (234)
405 2o52_A RAS-related protein RAB 96.2 0.0023 7.8E-08 51.6 3.1 22 29-50 27-48 (200)
406 2wsm_A Hydrogenase expression/ 96.2 0.002 7E-08 52.6 2.8 24 28-51 31-54 (221)
407 3v9p_A DTMP kinase, thymidylat 96.2 0.0021 7.1E-08 54.1 2.8 29 24-52 22-50 (227)
408 1jwy_B Dynamin A GTPase domain 96.2 0.0024 8.1E-08 55.3 3.3 23 29-51 26-48 (315)
409 1zj6_A ADP-ribosylation factor 96.2 0.0024 8.1E-08 50.7 3.1 23 28-50 17-39 (187)
410 1mh1_A RAC1; GTP-binding, GTPa 96.2 0.002 6.9E-08 50.6 2.6 22 29-50 7-28 (186)
411 3kkq_A RAS-related protein M-R 96.2 0.0027 9.2E-08 49.9 3.3 22 29-50 20-41 (183)
412 3tkl_A RAS-related protein RAB 96.2 0.0027 9.2E-08 50.5 3.3 23 29-51 18-40 (196)
413 4bas_A ADP-ribosylation factor 96.2 0.0024 8.2E-08 50.9 3.0 23 28-50 18-40 (199)
414 3lv8_A DTMP kinase, thymidylat 96.2 0.0028 9.7E-08 53.5 3.5 27 26-52 26-52 (236)
415 2cjw_A GTP-binding protein GEM 96.2 0.0021 7.2E-08 51.7 2.6 21 29-49 8-28 (192)
416 3oes_A GTPase rhebl1; small GT 96.2 0.002 6.9E-08 51.9 2.5 24 28-51 25-48 (201)
417 2qu8_A Putative nucleolar GTP- 96.2 0.0025 8.6E-08 52.6 3.1 23 28-50 30-52 (228)
418 3t5g_A GTP-binding protein RHE 96.2 0.0021 7.1E-08 50.5 2.5 21 29-49 8-28 (181)
419 2h17_A ADP-ribosylation factor 96.2 0.0022 7.5E-08 50.7 2.6 23 29-51 23-45 (181)
420 1z06_A RAS-related protein RAB 96.2 0.0023 7.8E-08 50.9 2.7 22 29-50 22-43 (189)
421 3dz8_A RAS-related protein RAB 96.2 0.0021 7.3E-08 51.2 2.5 23 29-51 25-47 (191)
422 3d3q_A TRNA delta(2)-isopenten 96.2 0.0027 9.2E-08 56.6 3.3 25 28-52 8-32 (340)
423 2a5j_A RAS-related protein RAB 96.2 0.0023 7.8E-08 51.1 2.6 23 29-51 23-45 (191)
424 3cmu_A Protein RECA, recombina 96.2 0.0065 2.2E-07 65.2 6.7 35 14-48 1066-1102(2050)
425 2ew1_A RAS-related protein RAB 96.2 0.0022 7.5E-08 52.2 2.5 22 29-50 28-49 (201)
426 2f7s_A C25KG, RAS-related prot 96.2 0.0029 1E-07 51.4 3.2 24 29-52 27-50 (217)
427 3llu_A RAS-related GTP-binding 96.2 0.003 1E-07 50.7 3.3 24 29-52 22-45 (196)
428 2h92_A Cytidylate kinase; ross 96.2 0.0027 9.1E-08 52.0 3.0 25 27-51 3-27 (219)
429 3bwd_D RAC-like GTP-binding pr 96.1 0.0024 8.3E-08 50.0 2.6 22 29-50 10-31 (182)
430 1ak2_A Adenylate kinase isoenz 96.1 0.0034 1.2E-07 52.2 3.7 25 26-50 15-39 (233)
431 4tmk_A Protein (thymidylate ki 96.1 0.0033 1.1E-07 52.2 3.6 27 26-52 2-28 (213)
432 3reg_A RHO-like small GTPase; 96.1 0.0024 8.3E-08 50.9 2.6 23 29-51 25-47 (194)
433 2q3h_A RAS homolog gene family 96.1 0.0031 1.1E-07 50.5 3.2 24 27-50 20-43 (201)
434 2bcg_Y Protein YP2, GTP-bindin 96.1 0.0023 8E-08 51.5 2.5 23 29-51 10-32 (206)
435 1zd9_A ADP-ribosylation factor 96.1 0.0025 8.5E-08 50.8 2.6 22 29-50 24-45 (188)
436 2atv_A RERG, RAS-like estrogen 96.1 0.0025 8.7E-08 51.0 2.7 23 28-50 29-51 (196)
437 1x3s_A RAS-related protein RAB 96.1 0.0025 8.7E-08 50.5 2.6 23 29-51 17-39 (195)
438 2j1l_A RHO-related GTP-binding 96.1 0.003 1E-07 51.5 3.1 22 29-50 36-57 (214)
439 2p5s_A RAS and EF-hand domain 96.1 0.0026 8.9E-08 51.1 2.6 26 26-51 27-52 (199)
440 3cph_A RAS-related protein SEC 96.1 0.0026 9E-08 51.3 2.6 23 28-50 21-43 (213)
441 1sky_E F1-ATPase, F1-ATP synth 96.1 0.0032 1.1E-07 58.4 3.5 44 16-60 141-184 (473)
442 2iwr_A Centaurin gamma 1; ANK 96.1 0.0021 7.2E-08 50.3 1.9 22 29-50 9-30 (178)
443 2aka_B Dynamin-1; fusion prote 96.0 0.0029 1E-07 54.2 2.9 24 29-52 28-51 (299)
444 2fv8_A H6, RHO-related GTP-bin 96.0 0.0027 9.4E-08 51.4 2.5 24 28-51 26-49 (207)
445 2b6h_A ADP-ribosylation factor 96.0 0.0031 1.1E-07 50.6 2.8 24 27-50 29-52 (192)
446 2ocp_A DGK, deoxyguanosine kin 96.0 0.0039 1.3E-07 52.1 3.5 27 26-52 1-27 (241)
447 3def_A T7I23.11 protein; chlor 96.0 0.0034 1.2E-07 53.3 3.1 23 29-51 38-60 (262)
448 1gwn_A RHO-related GTP-binding 96.0 0.0028 9.4E-08 51.7 2.5 23 29-51 30-52 (205)
449 3tmk_A Thymidylate kinase; pho 96.0 0.0041 1.4E-07 51.8 3.5 33 25-58 3-35 (216)
450 2fu5_C RAS-related protein RAB 96.0 0.0021 7.3E-08 50.5 1.6 22 29-50 10-31 (183)
451 3c5c_A RAS-like protein 12; GD 96.0 0.0032 1.1E-07 50.2 2.7 22 29-50 23-44 (187)
452 3exa_A TRNA delta(2)-isopenten 96.0 0.0042 1.4E-07 54.8 3.6 68 27-97 3-80 (322)
453 1ypw_A Transitional endoplasmi 96.0 0.0011 3.8E-08 65.6 -0.2 44 20-65 504-547 (806)
454 3ld9_A DTMP kinase, thymidylat 96.0 0.0043 1.5E-07 52.0 3.5 28 25-52 19-46 (223)
455 3crm_A TRNA delta(2)-isopenten 96.0 0.0039 1.3E-07 55.2 3.4 24 28-51 6-29 (323)
456 2p65_A Hypothetical protein PF 96.0 0.0036 1.2E-07 49.0 2.8 27 25-51 41-67 (187)
457 1h65_A Chloroplast outer envel 95.9 0.0037 1.3E-07 53.3 3.1 23 29-51 41-63 (270)
458 3a8t_A Adenylate isopentenyltr 95.9 0.0043 1.5E-07 55.2 3.5 26 26-51 39-64 (339)
459 2fh5_B SR-beta, signal recogni 95.9 0.0045 1.5E-07 50.2 3.4 23 29-51 9-31 (214)
460 2gco_A H9, RHO-related GTP-bin 95.9 0.0032 1.1E-07 50.7 2.5 22 29-50 27-48 (201)
461 2atx_A Small GTP binding prote 95.9 0.0036 1.2E-07 49.9 2.5 22 29-50 20-41 (194)
462 2g3y_A GTP-binding protein GEM 95.9 0.0046 1.6E-07 51.0 3.3 22 29-50 39-60 (211)
463 3pxi_A Negative regulator of g 95.9 0.018 6.2E-07 56.2 8.1 39 150-189 579-628 (758)
464 3umf_A Adenylate kinase; rossm 95.9 0.0037 1.3E-07 52.1 2.7 29 21-49 23-51 (217)
465 2zts_A Putative uncharacterize 95.8 0.0065 2.2E-07 50.2 4.1 58 148-205 133-206 (251)
466 4djt_A GTP-binding nuclear pro 95.8 0.002 6.7E-08 52.5 0.8 23 29-51 13-35 (218)
467 2hf9_A Probable hydrogenase ni 95.8 0.005 1.7E-07 50.4 3.2 24 28-51 39-62 (226)
468 2v3c_C SRP54, signal recogniti 95.8 0.00096 3.3E-08 61.4 -1.4 43 22-64 92-136 (432)
469 2x77_A ADP-ribosylation factor 95.8 0.0031 1.1E-07 50.0 1.8 22 28-49 23-44 (189)
470 2orw_A Thymidine kinase; TMTK, 95.8 0.006 2E-07 49.3 3.5 52 149-205 75-137 (184)
471 1p5z_B DCK, deoxycytidine kina 95.8 0.0033 1.1E-07 53.3 2.0 29 24-52 21-49 (263)
472 2r62_A Cell division protease 95.8 0.0014 4.9E-08 55.4 -0.3 28 21-50 40-67 (268)
473 2yc2_C IFT27, small RAB-relate 95.7 0.0021 7E-08 51.6 0.5 22 29-50 22-43 (208)
474 2hup_A RAS-related protein RAB 95.7 0.0046 1.6E-07 49.9 2.5 23 29-51 31-53 (201)
475 3cpj_B GTP-binding protein YPT 95.7 0.0049 1.7E-07 50.5 2.7 23 29-51 15-37 (223)
476 4gzl_A RAS-related C3 botulinu 95.6 0.0049 1.7E-07 49.9 2.5 22 28-49 31-52 (204)
477 3foz_A TRNA delta(2)-isopenten 95.6 0.007 2.4E-07 53.3 3.6 25 27-51 10-34 (316)
478 3q3j_B RHO-related GTP-binding 95.6 0.0055 1.9E-07 50.1 2.6 22 29-50 29-50 (214)
479 2j0v_A RAC-like GTP-binding pr 95.5 0.0057 2E-07 49.4 2.5 22 29-50 11-32 (212)
480 3sr0_A Adenylate kinase; phosp 95.5 0.0081 2.8E-07 49.5 3.3 22 29-50 2-23 (206)
481 3tqf_A HPR(Ser) kinase; transf 95.5 0.014 4.7E-07 47.2 4.4 35 14-49 4-38 (181)
482 4hlc_A DTMP kinase, thymidylat 95.4 0.0093 3.2E-07 49.1 3.5 26 27-52 2-27 (205)
483 1puj_A YLQF, conserved hypothe 95.4 0.012 4E-07 50.9 4.1 29 28-56 121-149 (282)
484 1wxq_A GTP-binding protein; st 95.4 0.0079 2.7E-07 54.6 3.1 41 112-156 181-221 (397)
485 1a5t_A Delta prime, HOLB; zinc 95.4 0.036 1.2E-06 48.7 7.2 43 149-192 107-149 (334)
486 1lnz_A SPO0B-associated GTP-bi 95.3 0.014 4.8E-07 51.9 4.3 33 18-50 149-181 (342)
487 3eph_A TRNA isopentenyltransfe 95.2 0.011 3.6E-07 54.0 3.4 68 28-98 3-80 (409)
488 4a9a_A Ribosome-interacting GT 95.2 0.012 4E-07 53.2 3.6 44 21-64 64-120 (376)
489 3p32_A Probable GTPase RV1496/ 95.2 0.011 3.9E-07 52.5 3.4 26 26-51 78-103 (355)
490 2hjg_A GTP-binding protein ENG 95.1 0.0092 3.1E-07 54.6 2.7 22 29-50 5-26 (436)
491 3th5_A RAS-related C3 botulinu 94.1 0.0037 1.3E-07 50.3 0.0 22 28-49 31-52 (204)
492 3gj0_A GTP-binding nuclear pro 95.0 0.0069 2.4E-07 49.4 1.5 38 141-178 167-209 (221)
493 3pvs_A Replication-associated 95.0 0.0073 2.5E-07 55.7 1.7 41 18-58 39-81 (447)
494 2x2e_A Dynamin-1; nitration, h 95.0 0.0079 2.7E-07 53.4 1.8 23 29-51 33-55 (353)
495 3l0i_B RAS-related protein RAB 95.0 0.0023 8E-08 51.4 -1.5 23 29-51 35-57 (199)
496 3uk6_A RUVB-like 2; hexameric 95.0 0.013 4.5E-07 51.6 3.2 37 25-61 68-104 (368)
497 3gmt_A Adenylate kinase; ssgci 95.0 0.014 4.7E-07 49.2 3.1 22 28-49 9-30 (230)
498 2qgz_A Helicase loader, putati 94.9 0.016 5.6E-07 50.5 3.7 25 27-51 152-176 (308)
499 1d2n_A N-ethylmaleimide-sensit 94.9 0.014 4.9E-07 49.4 3.1 26 25-50 62-87 (272)
500 2qpt_A EH domain-containing pr 94.8 0.014 4.7E-07 55.3 3.1 24 28-51 66-89 (550)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6e-64 Score=455.02 Aligned_cols=219 Identities=28% Similarity=0.419 Sum_probs=202.9
Q ss_pred CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-Ch---HHhh
Q psy7367 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM---TTIR 73 (251)
Q Consensus 1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~---~~~~ 73 (251)
|+++||+|+|+++ ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. .. ...|
T Consensus 25 i~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r 104 (366)
T 3tui_C 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 104 (366)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 5789999999532 469999999999999999999999999999999999999999999999999864 22 2346
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCE
Q psy7367 74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRT 153 (251)
Q Consensus 74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~l 153 (251)
++|||+||++.+++.+||+||+.++....+.+..+.++++.++|+.+||.+..+++|.+|||||||||+|||||+.+|++
T Consensus 105 ~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~l 184 (366)
T 3tui_C 105 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV 184 (366)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSE
T ss_pred CcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 88999999999999999999999998887777777788999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 154 VILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 154 lllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||||||++||+.++..++++|++++ + |.|||+||||++++.++|||+++|++|++++.|+++++.
T Consensus 185 LLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 185 LLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999984 3 999999999999999999999999999999999987653
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.2e-64 Score=442.55 Aligned_cols=219 Identities=27% Similarity=0.451 Sum_probs=200.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC---hHHhhcceE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD---MTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~~~i~ 77 (251)
|+++||+++|+++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++... ...++++||
T Consensus 8 l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig 87 (275)
T 3gfo_A 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIG 87 (275)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEE
T ss_pred EEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEE
Confidence 47899999996545699999999999999999999999999999999999999999999999998422 234678899
Q ss_pred EEccCCC-CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 78 VCPQYNA-LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 78 ~v~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
|+||++. .++.+||+||+.|+....+.+..+..++++++++.++|.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 88 ~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlL 167 (275)
T 3gfo_A 88 IVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLIL 167 (275)
T ss_dssp EECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999973 344789999999988777777777778899999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
||||+|||+.++..++++|++++ + |+|||++|||++++..+|||+++|++|++++.|+++++.
T Consensus 168 DEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 168 DEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred ECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999985 4 999999999999999999999999999999999987653
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.7e-64 Score=455.88 Aligned_cols=218 Identities=28% Similarity=0.380 Sum_probs=200.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC---ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~~~i~ 77 (251)
|+++||+|+|+ ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.. .....++.||
T Consensus 5 l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 5 LHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 57999999996 4789999999999999999999999999999999999999999999999999821 1223467899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
||||++.+|+++||+||+.|+...++.+..+.+++++++++.++|.++.+++|.+|||||||||+|||||+.+|++||||
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD 163 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD 163 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999999999999999877666666777788999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhh-h-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKY-K-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l-~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||++||+..+..+++.+.++ + .|.|||+||||++++..+||||++|++|+++..|+++++.
T Consensus 164 EPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 164 EPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 999999999999999988776 4 4999999999999999999999999999999999998764
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.1e-63 Score=455.82 Aligned_cols=217 Identities=26% Similarity=0.428 Sum_probs=203.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++||+|+|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .++.|||||
T Consensus 4 l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~-~~r~ig~Vf 81 (381)
T 3rlf_A 4 VQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP-AERGVGMVF 81 (381)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG-GGSCEEEEC
T ss_pred EEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH-HHCCEEEEe
Confidence 57999999996 4789999999999999999999999999999999999999999999999999864322 347899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+|+++||+||+.|+.+.++.++++.+++++++++.++|.+..+++|.+|||||||||+|||||+.+|++|||||||
T Consensus 82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt 161 (381)
T 3rlf_A 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (381)
T ss_dssp TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 99999999999999999988888888888889999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
++||+..+..+++.|++++ + |.|+|+||||++++..+||||++|++|+++..|+++++.
T Consensus 162 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 9999999999999999984 4 999999999999999999999999999999999998763
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.8e-63 Score=433.18 Aligned_cols=219 Identities=24% Similarity=0.425 Sum_probs=199.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC---CChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR---TDMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~---~~~~~~~~~i~ 77 (251)
|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++. .....+++.|+
T Consensus 25 l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 25 IDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred EEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence 47999999996 478999999999999999999999999999999999999999999999999984 22334567899
Q ss_pred EEccCCCCCCCCCHHHHHHHHH-HhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
|+||++.+++.+||+||+.++. ...+.+..+..++++++++.++|.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 104 ~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllL 183 (263)
T 2olj_A 104 MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLF 183 (263)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 9999999999999999999864 444555555567789999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
||||+|||+.+++.++++|++++ +|+|||++|||++++.++||++++|++|++++.|+++++..
T Consensus 184 DEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 184 DEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999985 59999999999999999999999999999999999877643
No 6
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.4e-63 Score=431.25 Aligned_cols=220 Identities=28% Similarity=0.437 Sum_probs=201.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++......+++.|||+|
T Consensus 16 l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~ 94 (256)
T 1vpl_A 16 VVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 94 (256)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred EEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEc
Confidence 57999999996 47899999999999999999999999999999999999999999999999998654455678899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+||+||+.++...++....+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 95 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 174 (256)
T 1vpl_A 95 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT 174 (256)
T ss_dssp TTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 99999999999999999766555555555567899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+|||+.++..++++|++++ +|+|||++|||++++..+||++++|++|++++.|+++++...
T Consensus 175 s~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 175 SGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 9999999999999999985 599999999999999999999999999999999998877543
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.2e-63 Score=432.69 Aligned_cols=219 Identities=23% Similarity=0.367 Sum_probs=198.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-----------Ch
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----------DM 69 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-----------~~ 69 (251)
|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ..
T Consensus 7 l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 7 LHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred EEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence 57899999996 4789999999999999999999999999999999999999999999999998851 11
Q ss_pred ---HHhhcceEEEccCCCCCCCCCHHHHHHHHH-HhcCCChHHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHH
Q psy7367 70 ---TTIRRSLGVCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVA 144 (251)
Q Consensus 70 ---~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia 144 (251)
..+++.|||+||++.+++.+||+||+.++. ...+.+..+..+++.++++.++|.+. .++++.+|||||||||+||
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lA 165 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 165 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHH
Confidence 235678999999999999999999999864 44455555556778999999999998 9999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 145 MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 145 ~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
|||+.+|++|||||||+|||+.+++.++++|++++ +|.|||++|||++++..+|||+++|++|++++.|+++++..
T Consensus 166 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 166 RALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999985 59999999999999999999999999999999999877643
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=9.6e-63 Score=421.16 Aligned_cols=212 Identities=22% Similarity=0.339 Sum_probs=193.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChH---Hhh-cc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMT---TIR-RS 75 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~---~~~-~~ 75 (251)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ... .++ ++
T Consensus 5 l~~~~l~~~y~~-~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 83 (224)
T 2pcj_A 5 LRAENIKKVIRG-YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRK 83 (224)
T ss_dssp EEEEEEEEEETT-EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHH
T ss_pred EEEEeEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCc
Confidence 478999999964 789999999999999999999999999999999999999999999999999854 221 233 67
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
|+|+||++.+++.+||+||+.++...++.+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus 84 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 163 (224)
T 2pcj_A 84 LGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLF 163 (224)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEE
T ss_pred EEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999997766555555556778999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~ 214 (251)
|||||+|||+.++..++++|++++ +|.|||++|||++++ .+||++++|++|++++.|+
T Consensus 164 LDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 164 ADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 999999999999999999999985 599999999999998 7999999999999998875
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=6.8e-63 Score=424.97 Aligned_cols=217 Identities=24% Similarity=0.356 Sum_probs=191.8
Q ss_pred CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHH---h-
Q psy7367 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTT---I- 72 (251)
Q Consensus 1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~---~- 72 (251)
|+++||+++|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. .... .
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 5799999999632 359999999999999999999999999999999999999999999999999864 2222 2
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHc
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLK---QVPKDLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
++.|||+||++.+++.+||+||+.++.... .....+..+++.++++.+++.+. .++++.+|||||||||+|||||+
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~ 161 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALA 161 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHH
Confidence 356999999999999999999999976543 34555666788999999999875 49999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
.+|++|||||||+|||+.++..++++|++++ + |+|||+||||++.+ .+|||+++|++|+++..++++++
T Consensus 162 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 162 NNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC--
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhh
Confidence 9999999999999999999999999999984 4 99999999999965 79999999999999998876543
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.8e-62 Score=444.65 Aligned_cols=217 Identities=24% Similarity=0.402 Sum_probs=201.2
Q ss_pred CEEEeEEEEe-CCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367 1 MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y-~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 79 (251)
|+++||+|+| ++ +++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.... ..++.||||
T Consensus 15 l~~~~l~~~y~g~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~v 92 (355)
T 1z47_A 15 IEFVGVEKIYPGG-ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-PQKRNVGLV 92 (355)
T ss_dssp EEEEEEEECCTTS-TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-GGGSSEEEE
T ss_pred EEEEEEEEEEcCC-CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC-hhhCcEEEE
Confidence 5789999999 64 67999999999999999999999999999999999999999999999999985422 346789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP 159 (251)
||++.+|+++||+||+.|+...++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++||||||
T Consensus 93 ~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 93 FQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEP 172 (355)
T ss_dssp CGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 99999999999999999988776666666677899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 160 TSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 160 t~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|++||+..++.+++.|+++. + |.|||++|||++++..+|||+++|++|+++..|+++++.
T Consensus 173 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 173 FAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp TCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999984 4 999999999999999999999999999999999987663
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.2e-62 Score=444.26 Aligned_cols=217 Identities=26% Similarity=0.407 Sum_probs=200.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++|+|+ ++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... .++.|||||
T Consensus 4 l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~-~~r~ig~v~ 81 (362)
T 2it1_A 4 IKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP-KDRNVGLVF 81 (362)
T ss_dssp EEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-GGTTEEEEC
T ss_pred EEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH-hHCcEEEEe
Confidence 47899999996 4789999999999999999999999999999999999999999999999999854222 357899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+|+++||+||+.|+.+.++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 161 (362)
T 2it1_A 82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPL 161 (362)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 99999999999999999887766666666778999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
++||+..+..+++.|+++. + |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 162 SNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999984 4 999999999999999999999999999999999987663
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-62 Score=445.38 Aligned_cols=217 Identities=27% Similarity=0.377 Sum_probs=199.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++|+|+ ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... ..++.|||||
T Consensus 4 l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~v~ 81 (359)
T 2yyz_A 4 IRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP-PKYREVGMVF 81 (359)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGTTEEEEC
T ss_pred EEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC-hhhCcEEEEe
Confidence 47899999996 478999999999999999999999999999999999999999999999999985422 2357899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+|+++||+||+.|+.+.++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~ 161 (359)
T 2yyz_A 82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPL 161 (359)
T ss_dssp SSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 99999999999999999876555544555567999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
++||+..++.+++.|+++. + |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 162 SNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999984 4 999999999999999999999999999999999987663
No 13
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.5e-62 Score=428.75 Aligned_cols=215 Identities=24% Similarity=0.372 Sum_probs=196.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....+++.++|+
T Consensus 12 l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v 90 (266)
T 4g1u_C 12 LEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVM 90 (266)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEE
Confidence 47899999996 4789999999999999999999999999999999999999999999999999864 344566789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc------CCCE
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG------GSRT 153 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~------~p~l 153 (251)
||++.+++.+||+||+.++...+. ..+.+++++++++.+++.+..++++.+|||||||||+|||||+. +|++
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l 168 (266)
T 4g1u_C 91 RQYSELAFPFSVSEVIQMGRAPYG--GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW 168 (266)
T ss_dssp CSCCCCCSCCBHHHHHHGGGTTSC--STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred ecCCccCCCCCHHHHHHhhhhhcC--cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 999998888999999998765432 23345678999999999999999999999999999999999999 9999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 154 VILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 154 lllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|||||||+|||+.++..++++|++++ + ++|||++|||++++..+|||+++|++|++++.|+++++
T Consensus 169 LllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 169 LFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999985 4 67999999999999999999999999999999998765
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.7e-62 Score=427.64 Aligned_cols=216 Identities=22% Similarity=0.331 Sum_probs=195.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-h-HHhhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-M-TTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~-~~~~~~i~~ 78 (251)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... . ...++.|+|
T Consensus 8 l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 86 (257)
T 1g6h_A 8 LRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 86 (257)
T ss_dssp EEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred EEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 57899999996 47899999999999999999999999999999999999999999999999998542 2 234678999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHh--cC-----------CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQL--KQ-----------VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM 145 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~--~~-----------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~ 145 (251)
+||++.+++.+||+||+.++... .+ ....+..++++++++.+++.+..++++.+|||||||||+|||
T Consensus 87 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAr 166 (257)
T 1g6h_A 87 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGR 166 (257)
T ss_dssp CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred EccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHH
Confidence 99999999999999999986543 12 233445567899999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHH
Q psy7367 146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVF 217 (251)
Q Consensus 146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 217 (251)
||+.+|++|||||||+|||+.+++.++++|++++ +|+|||++|||++++..+|||+++|++|++++.|++++
T Consensus 167 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 167 ALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999985 59999999999999999999999999999999998776
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=5.3e-62 Score=444.63 Aligned_cols=218 Identities=27% Similarity=0.389 Sum_probs=200.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-----hHHhhcc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-----MTTIRRS 75 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~~ 75 (251)
|+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++... ....+++
T Consensus 4 l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 4 VRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 57899999996 47899999999999999999999999999999999999999999999999987430 1123578
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
||||||++.+|+++||+||+.|+.+.++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++||
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 162 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL 162 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999998877666666667789999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||||++||+..+..+++.|+++. + |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus 163 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 163 MDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999984 4 999999999999999999999999999999999987663
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.7e-62 Score=445.23 Aligned_cols=218 Identities=26% Similarity=0.375 Sum_probs=200.4
Q ss_pred CEEEeEEEEeCCCcc--eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC----hHHhhc
Q psy7367 1 MAIQNLSKRFPNGKL--AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD----MTTIRR 74 (251)
Q Consensus 1 l~i~~l~~~y~~~~~--il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~----~~~~~~ 74 (251)
|+++||+|+|++ ++ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++... ....++
T Consensus 4 l~i~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 4 IIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp EEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEeEEEEECC-EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 478999999964 67 99999999999999999999999999999999999999999999999987431 223467
Q ss_pred ceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367 75 SLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV 154 (251)
Q Consensus 75 ~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll 154 (251)
+||||||++.+|+++||+||+.|+...++.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++|
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lL 162 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLL 162 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 89999999999999999999999877666666666778999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 155 ILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 155 llDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
||||||++||+..+..+++.|+++. + |.|||++|||++++..+|||+++|++|+++..|+++++.
T Consensus 163 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999984 4 999999999999999999999999999999999987663
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=5.2e-62 Score=444.32 Aligned_cols=217 Identities=30% Similarity=0.396 Sum_probs=193.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++||+|+|+ ++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... ..+++|||||
T Consensus 12 l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~v~ 89 (372)
T 1v43_A 12 VKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PKDRNISMVF 89 (372)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGGTEEEEE
T ss_pred EEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC-hhhCcEEEEe
Confidence 47899999996 478999999999999999999999999999999999999999999999999985422 2357899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+|+++||+||+.|+.+.++.+..+.+++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 169 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 169 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999999999999999876666666666778999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
++||+..+..+++.|+++. + |.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus 170 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 170 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999984 4 999999999999999999999999999999999987663
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.9e-62 Score=418.89 Aligned_cols=217 Identities=24% Similarity=0.386 Sum_probs=194.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHH-hhcceEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTT-IRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~-~~~~i~~ 78 (251)
++++||+++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .... .+++|+|
T Consensus 7 l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 85 (240)
T 1ji0_A 7 LEVQSLHVYYGA-IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIAL 85 (240)
T ss_dssp EEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEE
T ss_pred EEEEeEEEEECC-eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEE
Confidence 478999999964 789999999999999999999999999999999999999999999999999854 2222 3456999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC-CCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG-IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD 157 (251)
+||++.+++.+||+||+.++... .....+..++++++++.++ +.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 86 v~q~~~l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD 164 (240)
T 1ji0_A 86 VPEGRRIFPELTVYENLMMGAYN-RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD 164 (240)
T ss_dssp ECSSCCCCTTSBHHHHHHGGGTT-CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EecCCccCCCCcHHHHHHHhhhc-CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 99999999999999999886422 2223344567889999995 988899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 158 EPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 158 EPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
|||+|||+.+++.++++|++++ +|+|||++|||++++..+|||+++|++|++++.|+++++.
T Consensus 165 EPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 165 EPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999985 6999999999999999999999999999999999887653
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.3e-61 Score=438.30 Aligned_cols=213 Identities=27% Similarity=0.411 Sum_probs=195.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++|+|++ + +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.... ..+++|||||
T Consensus 2 l~~~~l~~~y~~-~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~~r~ig~v~ 78 (348)
T 3d31_A 2 IEIESLSRKWKN-F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PEKHDIAFVY 78 (348)
T ss_dssp EEEEEEEEECSS-C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC-HHHHTCEEEC
T ss_pred EEEEEEEEEECC-E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCc-hhhCcEEEEe
Confidence 578999999964 6 999999999999999999999999999999999999999999999999985422 3467899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+|+++||+||+.|+...++.+.. ++++++++.++|.++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus 79 Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 79 QNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred cCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 999999999999999998766554433 67889999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
++||+..++.+++.|++++ .|.|+|++|||++++..+|||+++|++|+++..|+++++.
T Consensus 156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999984 3999999999999999999999999999999999987663
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-61 Score=416.24 Aligned_cols=213 Identities=25% Similarity=0.360 Sum_probs=192.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++ +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++... ...+++|||+|
T Consensus 2 l~~~~l~~~y~~---~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~i~~v~ 76 (240)
T 2onk_A 2 FLKVRAEKRLGN---FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL-PPERRGIGFVP 76 (240)
T ss_dssp CEEEEEEEEETT---EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-CTTTSCCBCCC
T ss_pred EEEEEEEEEeCC---EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-chhhCcEEEEc
Confidence 689999999953 59999999999 99999999999999999999999999999999999998532 23467899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+||+||+.++...++ ....+++++++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 77 q~~~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 77 QDYALFPHLSVYRNIAYGLRNVE--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp SSCCCCTTSCHHHHHHTTCTTSC--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred CCCccCCCCcHHHHHHHHHHHcC--CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 99999999999999998654332 1222567889999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 161 SGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+|||+.+++.++++|++++ + |+|||++|||++++..+||++++|++|++++.|+++++..
T Consensus 155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999984 4 9999999999999999999999999999999999887643
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=8.4e-61 Score=418.98 Aligned_cols=218 Identities=23% Similarity=0.359 Sum_probs=194.0
Q ss_pred CEEEeEEEEeC-CC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcce
Q psy7367 1 MAIQNLSKRFP-NG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~-~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 76 (251)
|+++|++++|+ ++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .+++.|
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~--~~~~~i 80 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY--EIRRNI 80 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH--HHGGGE
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH--HhhhhE
Confidence 57899999996 23 5799999999999999999999999999999999999999999999999988532 567789
Q ss_pred EEEccCC-CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC--cccCCCCCcCChhHHHHHHHHHHHccCCCE
Q psy7367 77 GVCPQYN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP--HKRTSLANTLSGGMQRKLSVAMAFIGGSRT 153 (251)
Q Consensus 77 ~~v~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~kqrv~ia~al~~~p~l 153 (251)
||+||++ .+++.+||+||+.++.... .+..+..++++++++.++|. +..++++.+|||||||||+|||||+.+|++
T Consensus 81 ~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l 159 (266)
T 2yz2_A 81 GIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDI 159 (266)
T ss_dssp EEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999996 4566789999999865432 22223345688999999999 899999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 154 VILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 154 lllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
|||||||+|||+.+++.++++|++++ +|.|||++|||++++..+||++++|++|+++..|+++++...
T Consensus 160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999985 599999999999999999999999999999999998776543
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2e-60 Score=419.27 Aligned_cols=217 Identities=22% Similarity=0.307 Sum_probs=190.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC--C-ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR--T-DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~--~-~~~~~~~~i~ 77 (251)
|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. . ....++++|+
T Consensus 22 l~~~~l~~~y~-~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~ 100 (279)
T 2ihy_A 22 IQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIG 100 (279)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEE
T ss_pred EEEEeEEEEEC-CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEE
Confidence 47899999996 478999999999999999999999999999999999999999999999999885 3 3345678899
Q ss_pred EEccCCCCC--CCCCHHHHHHHHHH----hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367 78 VCPQYNALF--DKLTVEEHMWFYSQ----LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 78 ~v~q~~~l~--~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p 151 (251)
|+||++.++ +.+||+||+.++.. +.+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|
T Consensus 101 ~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p 180 (279)
T 2ihy_A 101 FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQP 180 (279)
T ss_dssp EECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCC
Confidence 999997643 35699999987532 112223344567889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeE--EEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTV--ILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~ti--ii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
++|||||||+|||+.+++.++++|++++ +|+|| |++|||++++..+||++++|++|++++.|+++++
T Consensus 181 ~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 181 QVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999985 48999 9999999999999999999999999999988655
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.5e-59 Score=407.54 Aligned_cols=216 Identities=19% Similarity=0.276 Sum_probs=186.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCeeEEEEcceeCCC-ChHH-hhcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM--LPVSSGTAKIYNHDIRT-DMTT-IRRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~-~~~~-~~~~i 76 (251)
++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|+++|+++.. .... .+..+
T Consensus 4 l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 4 LEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred EEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 47899999996 47899999999999999999999999999999999999 78999999999999854 2222 24569
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHH-hcC--CChHHHHHHHHHHHHHcCCC-cccCCCCCc-CChhHHHHHHHHHHHccCC
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQ-LKQ--VPKDLAQLEISNMIVDLGIP-HKRTSLANT-LSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~-LSgG~kqrv~ia~al~~~p 151 (251)
+|+||++.+|+.+||+||+.++.. ..+ ....+..+++.++++.+++. +..++++.+ |||||||||+|||||+.+|
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p 162 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP 162 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC
T ss_pred EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999988653 222 23334456788999999994 788999999 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhh-cCEEEEeeCCEEEeecCHHH
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSSVF 217 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 217 (251)
++|||||||+|||+.+++.++++|++++ +|+|||++|||++++..+ ||++++|++|++++.|+++.
T Consensus 163 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 163 TYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp SEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999985 589999999999999988 59999999999999999873
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=3.9e-59 Score=404.37 Aligned_cols=212 Identities=24% Similarity=0.391 Sum_probs=184.0
Q ss_pred CEEEeEEEEe-CCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y-~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++||+++| ++++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....+++.|+|
T Consensus 8 ~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~ 87 (247)
T 2ff7_A 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 87 (247)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEE
Confidence 4789999999 324679999999999999999999999999999999999999999999999999864 34456778999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCccc-----------CCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR-----------TSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~kqrv~ia~al 147 (251)
+||++.+|+ .||+||+.++.. ... .+++.++++.+++.+.. ++++.+|||||||||+|||||
T Consensus 88 v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL 160 (247)
T 2ff7_A 88 VLQDNVLLN-RSIIDNISLANP--GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL 160 (247)
T ss_dssp ECSSCCCTT-SBHHHHHTTTCT--TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred EeCCCcccc-ccHHHHHhccCC--CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHH
Confidence 999999886 599999987531 112 23455667777665443 455689999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+.+|++|||||||++||+.++..++++|+++++|+|||++|||++.+.. ||++++|++|++++.|+++++..
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 232 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLS 232 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEETTEEEEEECHHHHHT
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999998779999999999999864 99999999999999999887643
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5e-59 Score=408.78 Aligned_cols=217 Identities=23% Similarity=0.358 Sum_probs=188.5
Q ss_pred CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~ 77 (251)
|+++||+++|++ .+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ....+++.|+
T Consensus 17 l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 96 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVA 96 (271)
T ss_dssp EEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEE
T ss_pred EEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEE
Confidence 478999999963 2679999999999999999999999999999999999999999999999999853 3345667899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHH-----HHHHHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLA-----QLEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGG 150 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~ 150 (251)
|+||++.+|+ .||+||+.++..... ..... ...+.++++.+ ++....++++.+|||||||||+|||||+.+
T Consensus 97 ~v~Q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 97 AVGQEPLLFG-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EECSSCCCCS-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEecCCcccc-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 9999999887 599999988643211 10111 12356778888 788888999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 151 SRTVILDEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 151 p~llllDEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
|++|||||||+|||+.++..++++|+++. + |+|||++|||++++.. ||++++|++|++++.|+++++..
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999985 3 8999999999999875 99999999999999999877643
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.7e-58 Score=404.63 Aligned_cols=218 Identities=21% Similarity=0.294 Sum_probs=190.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCeeEEEEcceeCCC-ChHHh-hcce
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM--LPVSSGTAKIYNHDIRT-DMTTI-RRSL 76 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl--~~p~~G~i~~~g~~~~~-~~~~~-~~~i 76 (251)
|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|+++|+++.. ..... ++.|
T Consensus 21 l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 99 (267)
T 2zu0_C 21 LSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGI 99 (267)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTE
T ss_pred EEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCE
Confidence 47899999996 47899999999999999999999999999999999999 46899999999999853 22222 4569
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHH-h---cC---CChHHHHHHHHHHHHHcCCC-cccCCCCC-cCChhHHHHHHHHHHH
Q psy7367 77 GVCPQYNALFDKLTVEEHMWFYSQ-L---KQ---VPKDLAQLEISNMIVDLGIP-HKRTSLAN-TLSGGMQRKLSVAMAF 147 (251)
Q Consensus 77 ~~v~q~~~l~~~ltv~e~l~~~~~-~---~~---~~~~~~~~~~~~~l~~~~l~-~~~~~~~~-~LSgG~kqrv~ia~al 147 (251)
+|+||++.+++.+||.||+.+... . .+ ....+..++++++++.+++. ...++++. +|||||||||+|||||
T Consensus 100 ~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL 179 (267)
T 2zu0_C 100 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 179 (267)
T ss_dssp EEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHH
T ss_pred EEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH
Confidence 999999999999999999987542 1 11 23344456789999999996 57788887 5999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhh-cCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|++|||||||+|||+.+++.++++|++++ +|+|||++|||++++..+ |||+++|++|++++.|+++++.
T Consensus 180 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 180 VLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999999985 489999999999999886 9999999999999999887653
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.6e-58 Score=401.84 Aligned_cols=205 Identities=22% Similarity=0.355 Sum_probs=185.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|++++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|. +++.|+|+|
T Consensus 5 l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~------------~~~~i~~v~ 72 (253)
T 2nq2_C 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE------------VYQSIGFVP 72 (253)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE------------ECSCEEEEC
T ss_pred EEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE------------EeccEEEEc
Confidence 47899999996247899999999999999999999999999999999999999999998 245799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhc-C---CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLK-Q---VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
|++.+++.+||+||+.++.... + .......++++++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 73 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL 152 (253)
T 2nq2_C 73 QFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILL 152 (253)
T ss_dssp SCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999998999999999865322 1 12334456789999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
||||+|||+.+++.++++|++++ + |+|||++|||++++..+||++++|++|+ ++.|+++++
T Consensus 153 DEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 153 DEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp SSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 99999999999999999999984 5 8999999999999999999999999999 888887654
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=7.3e-59 Score=413.82 Aligned_cols=213 Identities=24% Similarity=0.401 Sum_probs=186.1
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
|+++||+++|++++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....+|+.||||
T Consensus 54 i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v 133 (306)
T 3nh6_A 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVV 133 (306)
T ss_dssp EEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEE
T ss_pred EEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEE
Confidence 5789999999655789999999999999999999999999999999999999999999999999965 455678899999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-----------CCCcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-----------GIPHKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
||++.+|+ .||+||+.++.... ... ++.++++.+ |+....++++.+|||||||||+|||||+
T Consensus 134 ~Q~~~lf~-~Tv~eNi~~~~~~~--~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~ 206 (306)
T 3nh6_A 134 PQDTVLFN-DTIADNIRYGRVTA--GND----EVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL 206 (306)
T ss_dssp CSSCCCCS-EEHHHHHHTTSTTC--CHH----HHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred ecCCccCc-ccHHHHHHhhcccC--CHH----HHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 99999986 59999998864322 122 233344443 4445556777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
.+|++|||||||++||+.+...+++.|.++.+++|||+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999999878999999999999987 999999999999999999877543
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.5e-58 Score=399.75 Aligned_cols=207 Identities=18% Similarity=0.269 Sum_probs=187.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|++++ ++|+++||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++.. ....++++++|+
T Consensus 5 l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 5 MQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp EEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence 468899875 5899999999999999999999999999999999999999 999999998853 334567789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC-------
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR------- 152 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~------- 152 (251)
||++.+++.+||+||+.++.. .... .+++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ 153 (249)
T 2qi9_C 79 SQQQTPPFATPVWHYLTLHQH-DKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ 153 (249)
T ss_dssp CSCCCCCTTCBHHHHHHTTCS-STTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred CCCCccCCCCcHHHHHHHhhc-cCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCe
Confidence 999999999999999987531 1111 4568899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
+|||||||+|||+.+++.++++|++++ +|+|||++|||++++..+||++++|++|++++.|+++++
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999984 699999999999999999999999999999999988765
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-58 Score=399.72 Aligned_cols=213 Identities=20% Similarity=0.318 Sum_probs=185.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
|+++|++++|++++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....++++|+|+
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 5789999999434679999999999999999999999999999999999999999999999999853 223456789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCC-----------CCCcCChhHHHHHHHHHHHc
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTS-----------LANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~kqrv~ia~al~ 148 (251)
||++.+|+ .||+||+.++.. .... .+++.++++.+++.+..++ ++.+|||||||||+|||||+
T Consensus 82 ~q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~ 155 (243)
T 1mv5_A 82 SQDSAIMA-GTIRENLTYGLE-GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFL 155 (243)
T ss_dssp CCSSCCCC-EEHHHHTTSCTT-SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred cCCCcccc-ccHHHHHhhhcc-CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHh
Confidence 99999887 599999987522 1112 2356788888888766544 46799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
.+|++|||||||+|||+.+++.+++.|+++++|+|||++|||++.+. .||++++|++|++++.|+++++..
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 156 RNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999877999999999999886 599999999999999999876643
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=8.5e-59 Score=394.25 Aligned_cols=199 Identities=18% Similarity=0.256 Sum_probs=178.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|+++|++++|+ + ++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++. ..++.|+|+|
T Consensus 11 l~~~~ls~~y~-~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~----~~~~~i~~v~ 84 (214)
T 1sgw_A 11 LEIRDLSVGYD-K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KVKGKIFFLP 84 (214)
T ss_dssp EEEEEEEEESS-S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----GGGGGEEEEC
T ss_pred EEEEEEEEEeC-C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh----hhcCcEEEEe
Confidence 57999999996 4 8999999999999999999999999999999999999999999999999874 2567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+||+||+.++...++. ..+ .+++.++++.+++.+. ++++.+|||||||||+|||||+.+|++|||||||
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 999999999999999987655432 112 4568899999999988 9999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~i 209 (251)
++||+.++..++++|++++ +|+|||++|||++++..+||+++.+ .|+|
T Consensus 162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 9999999999999999985 4899999999999999999998755 4554
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.1e-57 Score=398.67 Aligned_cols=208 Identities=24% Similarity=0.324 Sum_probs=187.8
Q ss_pred CEEEeEEEEeCCC---cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~---~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~ 77 (251)
++++|++++|+++ +++|+++||+|+ ||+++|+||||||||||||+|+|++ |++|+|.++|+++... .. +++++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~-~~-~~~i~ 77 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-RN-YIRYS 77 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC-SC-CTTEE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch-HH-hhheE
Confidence 5799999999531 679999999999 9999999999999999999999999 9999999999987533 23 67899
Q ss_pred -EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 78 -VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 78 -~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
|+||++.+ .+||+||+.++...+... .+++.++++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus 78 ~~v~Q~~~l--~~tv~enl~~~~~~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll 151 (263)
T 2pjz_A 78 TNLPEAYEI--GVTVNDIVYLYEELKGLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVG 151 (263)
T ss_dssp ECCGGGSCT--TSBHHHHHHHHHHHTCCC----HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEeCCCCcc--CCcHHHHHHHhhhhcchH----HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99999987 789999999876543221 34688999999999 99999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcC-EEEEeeCCEEEeecCHHHHHh
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGD-RIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d-~i~~l~~G~i~~~g~~~~~~~ 220 (251)
|||||++||+.+++.++++|+++++ |||++|||++++..+|| ++++|++|++++.|+++++..
T Consensus 152 LDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 152 LDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred EECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999865 99999999999999999 999999999999999887753
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=6.7e-57 Score=393.06 Aligned_cols=211 Identities=20% Similarity=0.361 Sum_probs=182.5
Q ss_pred CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~ 77 (251)
|+++||+++|++. +++|+++||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|+++.. ....+++.|+
T Consensus 18 l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~ 96 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIG 96 (260)
T ss_dssp EEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEE
T ss_pred EEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEE
Confidence 5789999999642 4699999999999999999999999999999999999987 8999999999853 3445678899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCcCChhHHHHHHHHHH
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK-----------RTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~kqrv~ia~a 146 (251)
|+||++.+|+ .||+||+.++.. ... .+++.++++.+++.+. .++++.+|||||||||+||||
T Consensus 97 ~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAra 169 (260)
T 2ghi_A 97 IVPQDTILFN-ETIKYNILYGKL--DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARC 169 (260)
T ss_dssp EECSSCCCCS-EEHHHHHHTTCT--TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHH
T ss_pred EEcCCCcccc-cCHHHHHhccCC--CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHH
Confidence 9999999886 599999987531 111 2345567777776432 346788999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
|+.+|++|||||||++||+.++..++++|+++++++|||++|||++.+. .||++++|++|++++.|+++++..
T Consensus 170 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 170 LLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp HHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999877899999999999986 599999999999999999877643
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-56 Score=411.52 Aligned_cols=209 Identities=22% Similarity=0.360 Sum_probs=187.5
Q ss_pred CEEEeEEEEeC-CCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFP-NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~-~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
|+++||+|+|+ +++.+|+++||+|++||+++|+||||||||||||+|+|+++ ++|+|+++|+++.. ....+++.|+|
T Consensus 20 i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~ 98 (390)
T 3gd7_A 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGV 98 (390)
T ss_dssp EEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEE
T ss_pred EEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEE
Confidence 57999999994 24679999999999999999999999999999999999998 99999999999865 44556789999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCc-----------CChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANT-----------LSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgG~kqrv~ia~al 147 (251)
|||++.+|+ +||+||+.++. ... .+++.++++.++|.++.+++|.+ |||||||||+|||||
T Consensus 99 v~Q~~~lf~-~tv~enl~~~~---~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL 170 (390)
T 3gd7_A 99 IPQKVFIFS-GTFRKNLDPNA---AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170 (390)
T ss_dssp ESCCCCCCS-EEHHHHHCTTC---CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred EcCCcccCc-cCHHHHhhhcc---ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence 999999997 69999996432 111 34678899999999999999998 999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+.+|++||||||||+||+..+..+++.|+++..++|+|++|||++.+ ..||||++|++|+++..|+++++.
T Consensus 171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELY 241 (390)
T ss_dssp HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHH
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999887789999999998765 569999999999999999998764
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1e-55 Score=378.78 Aligned_cols=199 Identities=25% Similarity=0.374 Sum_probs=169.5
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 79 (251)
|+++|++++|++ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +|+|+
T Consensus 7 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------------~i~~v 74 (229)
T 2pze_A 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------RISFC 74 (229)
T ss_dssp EEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS------------CEEEE
T ss_pred EEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC------------EEEEE
Confidence 478999999952 46799999999999999999999999999999999999999999999987 39999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCcCChhHHHHHHHHHHHc
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK-----------RTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
||++.+++. ||+||+.++... ... +..++++.+++.+. .++++.+|||||||||+|||||+
T Consensus 75 ~q~~~~~~~-tv~enl~~~~~~---~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~ 146 (229)
T 2pze_A 75 SQFSWIMPG-TIKENIIFGVSY---DEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY 146 (229)
T ss_dssp CSSCCCCSB-CHHHHHHTTSCC---CHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHH
T ss_pred ecCCcccCC-CHHHHhhccCCc---ChH----HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHh
Confidence 999998885 999999875321 111 22334444444322 23456899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHH-HhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELL-IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l-~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
.+|++|||||||+|||+.+++.+++.+ .++.+++|||++|||++++. .||++++|++|++++.|+++++..
T Consensus 147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHHT
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999974 56656899999999999986 599999999999999999877643
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.5e-55 Score=379.58 Aligned_cols=202 Identities=25% Similarity=0.371 Sum_probs=170.1
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 79 (251)
++++|++++|++ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| .|+|+
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------------~i~~v 71 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------------SVAYV 71 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------------CEEEE
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------------EEEEE
Confidence 479999999963 36799999999999999999999999999999999999999999999988 39999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHH---HHHHcCCC-----cccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN---MIVDLGIP-----HKRTSLANTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~---~l~~~~l~-----~~~~~~~~~LSgG~kqrv~ia~al~~~p 151 (251)
||++.+ +.+||+||+.++.... .... +++.+ +++.+++. ...++++.+|||||||||+|||||+.+|
T Consensus 72 ~Q~~~~-~~~tv~enl~~~~~~~---~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 72 PQQAWI-QNDSLRENILFGCQLE---EPYY-RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp CSSCCC-CSEEHHHHHHTTSCCC---TTHH-HHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred cCCCcC-CCcCHHHHhhCccccC---HHHH-HHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999875 4789999998854321 1111 11211 22333332 2357889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHH---hhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLI---KYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~---~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
++|||||||+|||+.++..+++.|. ++++|+|||++|||++.+. .||++++|++|++++.|+++++..
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHHhh
Confidence 9999999999999999999999995 4445899999999999985 699999999999999999877643
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=4.8e-54 Score=412.93 Aligned_cols=213 Identities=22% Similarity=0.390 Sum_probs=186.6
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. +...+|++|+|
T Consensus 342 i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 421 (582)
T 3b5x_A 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFAL 421 (582)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEE
Confidence 5789999999642 679999999999999999999999999999999999999999999999999854 44567889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccC-----------CCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRT-----------SLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~kqrv~ia~al 147 (251)
+||++.+|+. ||+||+.++.. .... .+++.++++.+++.+..+ ++..+||||||||++|||||
T Consensus 422 v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral 495 (582)
T 3b5x_A 422 VSQNVHLFND-TIANNIAYAAE-GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL 495 (582)
T ss_pred EcCCCccccc-cHHHHHhccCC-CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH
Confidence 9999999875 99999988531 1112 235667777777655443 45589999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+.+|+++||||||++||+.+++.+.+.|+++.+|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999877999999999999987 699999999999999999987754
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.8e-54 Score=412.89 Aligned_cols=214 Identities=22% Similarity=0.369 Sum_probs=187.0
Q ss_pred CEEEeEEEEeCCC-cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~~-~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. +...+|++|+|
T Consensus 342 i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 421 (582)
T 3b60_A 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 421 (582)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEE
T ss_pred EEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeE
Confidence 4789999999633 679999999999999999999999999999999999999999999999999865 44567889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK-----------RTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~kqrv~ia~al 147 (251)
+||++.+|+. ||+||+.++.. .... .+++.++++.+++.+. .++++.+||||||||++|||||
T Consensus 422 v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral 495 (582)
T 3b60_A 422 VSQNVHLFND-TVANNIAYART-EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_dssp ECSSCCCCSS-BHHHHHHTTTT-SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred EccCCcCCCC-CHHHHHhccCC-CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 9999999875 99999988531 1222 2346667777766443 4456689999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+.+|+++|||||||+||+.+++.+.+.++++.+|+|+|++||+++.+. .|||+++|++|++++.|+++++.+.
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 496 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence 999999999999999999999999999999877999999999999986 6999999999999999999877543
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=9.8e-54 Score=411.71 Aligned_cols=214 Identities=23% Similarity=0.375 Sum_probs=184.7
Q ss_pred CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~ 77 (251)
++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. +...+|++|+
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 4789999999642 469999999999999999999999999999999999999999999999999865 4456778999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCcCChhHHHHHHHHH
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIPHK-----------RTSLANTLSGGMQRKLSVAM 145 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~kqrv~ia~ 145 (251)
|+||++.+|+ .||+||+.++.... +.. +++++++++.+++.+. .++++.+||||||||++|||
T Consensus 422 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAr 496 (595)
T 2yl4_A 422 TVSQEPILFS-CSIAENIAYGADDPSSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIAR 496 (595)
T ss_dssp EECSSCCCCS-SBHHHHHHTTSSSTTTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHH
T ss_pred EEccCCcccC-CCHHHHHhhcCCCccccC----HHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 9999999987 49999999864321 112 2457778888876543 23345899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 146 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
||+++|+++||||||++||+.+++.+.+.++++.+++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 497 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 497 ALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp HHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECSCC---
T ss_pred HHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999877999999999999986 599999999999999999877643
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=9.1e-54 Score=410.71 Aligned_cols=213 Identities=26% Similarity=0.389 Sum_probs=184.7
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. +...+|++|+|
T Consensus 340 i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~ 419 (578)
T 4a82_A 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419 (578)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEE
T ss_pred EEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence 478999999964 3579999999999999999999999999999999999999999999999999864 45567889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHHH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~al 147 (251)
+||++.+|+. ||+||+.++.. .... +++.++++..++.+ ..+++..+||||||||++|||||
T Consensus 420 v~Q~~~l~~~-tv~eni~~~~~--~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral 492 (578)
T 4a82_A 420 VQQDNILFSD-TVKENILLGRP--TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 492 (578)
T ss_dssp ECSSCCCCSS-BHHHHHGGGCS--SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred EeCCCccCcc-cHHHHHhcCCC--CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHH
Confidence 9999999976 99999987532 1122 23455555555433 34455679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
+.+|+++|||||||+||+.+++.+.+.++++.+++|+|++||+++.+.. |||+++|++|++++.|+++++...
T Consensus 493 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 493 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRELIAK 565 (578)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHHHT
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999998878999999999999865 999999999999999999877543
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.1e-54 Score=411.36 Aligned_cols=216 Identities=26% Similarity=0.452 Sum_probs=185.4
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. +...+|++|+|
T Consensus 342 i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 421 (587)
T 3qf4_A 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISA 421 (587)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEE
T ss_pred EEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEE
Confidence 478999999953 3679999999999999999999999999999999999999999999999999864 45567889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p 151 (251)
+||++.+|+. ||+||+.++... ...++..+. +.+.++.+ |++...++++.+||||||||++|||||+.+|
T Consensus 422 v~Q~~~lf~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p 498 (587)
T 3qf4_A 422 VPQETVLFSG-TIKENLKWGRED--ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP 498 (587)
T ss_dssp ECSSCCCCSE-EHHHHHTTTCSS--CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCC
T ss_pred ECCCCcCcCc-cHHHHHhccCCC--CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCC
Confidence 9999999975 999999875321 122221111 12223333 5556667889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
++||||||||+||+.+.+.+.+.++++.+|+|+|++||+++.+. .||||++|++|++++.|+++++.+
T Consensus 499 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 499 KVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999877999999999999986 799999999999999999987754
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.4e-54 Score=413.78 Aligned_cols=213 Identities=26% Similarity=0.381 Sum_probs=186.0
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v 79 (251)
++++|++++|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. +...+|++|+|+
T Consensus 355 i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v 434 (598)
T 3qf4_B 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIV 434 (598)
T ss_dssp EEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEE
Confidence 4789999999655679999999999999999999999999999999999999999999999999864 455678899999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCC-----------CcCChhHHHHHHHHHHHc
Q psy7367 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA-----------NTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 80 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~kqrv~ia~al~ 148 (251)
||++.+|+ .||+||+.++.. .... +++.++++.+++.+..++.| .+||||||||++|||||+
T Consensus 435 ~Q~~~lf~-~tv~eni~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 435 LQDTILFS-TTVKENLKYGNP--GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp CTTCCCCS-SBHHHHHHSSST--TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred eCCCcccc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 99999987 499999987532 1122 23455666666655444443 799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
.+|++||||||||+||+.+.+.+.+.++++.+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHT
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999998889999999999999875 999999999999999999887543
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.6e-52 Score=368.40 Aligned_cols=194 Identities=25% Similarity=0.329 Sum_probs=155.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|+++.+ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +|+|+|
T Consensus 41 l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------~i~~v~ 105 (290)
T 2bbs_A 41 LSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------RISFCS 105 (290)
T ss_dssp ---------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS------------CEEEEC
T ss_pred EEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC------------EEEEEe
Confidence 4678999864 4699999999999999999999999999999999999999999999987 389999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCcCChhHHHHHHHHHHHcc
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK-----------RTSLANTLSGGMQRKLSVAMAFIG 149 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~kqrv~ia~al~~ 149 (251)
|++.+|+. ||+||+. +.. ... ..+.++++.+++.+. .++++.+|||||||||+|||||+.
T Consensus 106 Q~~~l~~~-tv~enl~-~~~---~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~ 176 (290)
T 2bbs_A 106 QNSWIMPG-TIKENII-GVS---YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 176 (290)
T ss_dssp SSCCCCSS-BHHHHHH-TTC---CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHS
T ss_pred CCCccCcc-cHHHHhh-Ccc---cch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHC
Confidence 99998885 9999997 321 111 123344455555332 234568999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH-HhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 150 GSRTVILDEPTSGVDPYSRRSIWELL-IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 150 ~p~llllDEPt~gLD~~~~~~l~~~l-~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+|++|||||||+|||+.++..+++.+ .++.+|+|||++|||++.+. .||++++|++|+++..|+++++.
T Consensus 177 ~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 177 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999999999999974 55656899999999999986 59999999999999999987763
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.1e-50 Score=413.67 Aligned_cols=223 Identities=23% Similarity=0.391 Sum_probs=188.6
Q ss_pred CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~ 77 (251)
|+++||+++|++ +.++|+|+||+|++||.+||+||||||||||+++|.|++.|++|+|.+||.|+.. +...+|++|+
T Consensus 1077 I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~ 1156 (1321)
T 4f4c_A 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIA 1156 (1321)
T ss_dssp EEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEE
T ss_pred EEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 578999999964 2469999999999999999999999999999999999999999999999999976 6678999999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-----------ccCCCCCcCChhHHHHHHHHHH
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-----------KRTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~kqrv~ia~a 146 (251)
||||+|.+|+. |++|||.|+..-...+ .+++.++++..++.+ ........||||||||++||||
T Consensus 1157 ~V~Qdp~LF~g-TIreNI~~gld~~~~s----d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A 1157 IVSQEPTLFDC-SIAENIIYGLDPSSVT----MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp EECSSCCCCSE-EHHHHHSSSSCTTTSC----HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred EECCCCEeeCc-cHHHHHhccCCCCCCC----HHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence 99999999986 9999998753222222 234666677666533 2333446799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhhhcCcc
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGY 226 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 226 (251)
|+++|++||||||||+||+++.+.+.+.|++..+++|+|+|+|.++.+.. ||||+||++|+|++.|+++++-+. .+.
T Consensus 1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~eLl~~--~g~ 1308 (1321)
T 4f4c_A 1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQLMSE--KGA 1308 (1321)
T ss_dssp HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHHHHHHC--C--
T ss_pred HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC--CcH
Confidence 99999999999999999999999999999998889999999999999875 999999999999999999988764 345
Q ss_pred eEEEe
Q psy7367 227 YLSLD 231 (251)
Q Consensus 227 ~~~~~ 231 (251)
|..+.
T Consensus 1309 y~~L~ 1313 (1321)
T 4f4c_A 1309 YYKLT 1313 (1321)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55544
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.5e-48 Score=402.47 Aligned_cols=216 Identities=26% Similarity=0.407 Sum_probs=184.3
Q ss_pred CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~ 77 (251)
++++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|++||
T Consensus 388 i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 467 (1284)
T 3g5u_A 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIG 467 (1284)
T ss_dssp EEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheE
Confidence 4789999999642 469999999999999999999999999999999999999999999999999864 4567788999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHH-----HHHHHHHc--CCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-----ISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGG 150 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~kqrv~ia~al~~~ 150 (251)
||||++.+|+. ||+||+.++.. ....++..+. +.+.++.+ |++.....+..+||||||||++|||||+.+
T Consensus 468 ~v~Q~~~l~~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~ 544 (1284)
T 3g5u_A 468 VVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRN 544 (1284)
T ss_dssp EECSSCCCCSS-CHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHC
T ss_pred EEcCCCccCCc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcC
Confidence 99999999976 99999998642 1222222221 12233333 334445667789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 151 SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
|++||||||||+||+.+.+.+.+.++++.+|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 545 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 545 PKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp CSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999888889999999999999976 99999999999999999887643
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=5.7e-49 Score=405.56 Aligned_cols=215 Identities=24% Similarity=0.403 Sum_probs=183.8
Q ss_pred CEEEeEEEEeCCC--cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPNG--KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~~--~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~ 77 (251)
++++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. +...+|++|+
T Consensus 1031 i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 1110 (1284)
T 3g5u_A 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLG 1110 (1284)
T ss_dssp EEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCE
T ss_pred EEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceE
Confidence 4789999999642 369999999999999999999999999999999999999999999999999965 4567788999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcc-----------cCCCCCcCChhHHHHHHHHHH
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK-----------RTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~kqrv~ia~a 146 (251)
||||++.+|+ .||+||+.++........+ ++.++++..++.+. ......+||||||||++||||
T Consensus 1111 ~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1111 IVSQEPILFD-CSIAENIAYGDNSRVVSYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp EEESSCCCCS-SBHHHHHTCCCSSCCCCHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred EECCCCcccc-ccHHHHHhccCCCCCCCHH----HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 9999998886 5999999875432222332 23444454444332 333456899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHhh
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 221 (251)
|+.+|++|||||||++||+.+.+.+.+.|++..+|+|||++|||++.+.. ||||++|++|++++.|+++++.+.
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEEEEECHHHHHHS
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999988779999999999999865 999999999999999999887554
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.7e-48 Score=398.98 Aligned_cols=212 Identities=25% Similarity=0.392 Sum_probs=185.4
Q ss_pred CEEEeEEEEeCC--CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceE
Q psy7367 1 MAIQNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77 (251)
Q Consensus 1 l~i~~l~~~y~~--~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~ 77 (251)
|+++|++++|++ ++++|+|+||+|++|+.++|+||||||||||+++|.|+++|++|+|.++|.++.. +...+|++|+
T Consensus 416 I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~ 495 (1321)
T 4f4c_A 416 ITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVA 495 (1321)
T ss_dssp EEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred EEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhccc
Confidence 478999999963 3579999999999999999999999999999999999999999999999999975 5677899999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC-----------CCcccCCCCCcCChhHHHHHHHHHH
Q psy7367 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG-----------IPHKRTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 78 ~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~kqrv~ia~a 146 (251)
||+|+|.+|+. |++|||.|+.. .... +++.++++..+ ++.........||||||||++||||
T Consensus 496 ~v~Q~~~Lf~~-TI~eNI~~g~~--~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARA 568 (1321)
T 4f4c_A 496 VVSQEPALFNC-TIEENISLGKE--GITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARA 568 (1321)
T ss_dssp EECSSCCCCSE-EHHHHHHTTCT--TCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHH
T ss_pred ccCCcceeeCC-chhHHHhhhcc--cchH----HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHH
Confidence 99999999976 99999998642 1222 23445555544 3344455667999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
+.++|++||||||||+||+.+...+.+.|.++.+|+|+|++||++..+. .||+|++|++|+|++.|+.+++..
T Consensus 569 l~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 569 LVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHHHHHT
T ss_pred HccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeeeccCCHHHHHH
Confidence 9999999999999999999999999999999988999999999999886 599999999999999999887643
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.8e-48 Score=372.93 Aligned_cols=201 Identities=20% Similarity=0.270 Sum_probs=177.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|++++|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+ ..+|+|+|
T Consensus 358 l~~~~l~~~~~~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~------------~~~i~~v~ 423 (607)
T 3bk7_A 358 VEYPRLVKDYGS--FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------------DLTVAYKP 423 (607)
T ss_dssp EEECCEEEECSS--CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC------------CCCEEEEC
T ss_pred EEEeceEEEecc--eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE------------eeEEEEEe
Confidence 468899999953 4799999999999999999999999999999999999999999976 24699999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++.+++.+||.|++....... ....+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 424 Q~~~~~~~~tv~e~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt 499 (607)
T 3bk7_A 424 QYIKAEYEGTVYELLSKIDSSK----LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 499 (607)
T ss_dssp SSCCCCCSSBHHHHHHHHHHHH----HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred cCccCCCCCcHHHHHHhhhccC----CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 9998878899999887641110 011345788999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeC--CEEEeecCHHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAA--GKLQCCGSSVFLK 219 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~--G~i~~~g~~~~~~ 219 (251)
+|||+.++..++++|+++. .|.|||++|||++++..+|||+++|++ |++...|+++.+.
T Consensus 500 ~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~ 562 (607)
T 3bk7_A 500 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMR 562 (607)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence 9999999999999999984 599999999999999999999999986 7788889886543
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.5e-48 Score=369.00 Aligned_cols=201 Identities=21% Similarity=0.289 Sum_probs=176.7
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ ...|+|+|
T Consensus 288 l~~~~l~~~~~~--~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~------------~~~i~~v~ 353 (538)
T 1yqt_A 288 VTYPRLVKDYGS--FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW------------DLTVAYKP 353 (538)
T ss_dssp EEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC------------CCCEEEEC
T ss_pred EEEeeEEEEECC--EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE------------CceEEEEe
Confidence 468899999953 4799999999999999999999999999999999999999999975 23699999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|++..++.+||.|++....... .. ..+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 354 Q~~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt 429 (538)
T 1yqt_A 354 QYIKADYEGTVYELLSKIDASK-LN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS 429 (538)
T ss_dssp SSCCCCCSSBHHHHHHHHHHHH-HT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred cCCcCCCCCcHHHHHHhhhccC-CC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 9998778899999886541110 01 1245788999999998899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeC--CEEEeecCHHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAA--GKLQCCGSSVFLK 219 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~--G~i~~~g~~~~~~ 219 (251)
+|||+.++..++++|+++. .|.|||++|||++++..+|||+++|++ |++...|+++++.
T Consensus 430 ~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~ 492 (538)
T 1yqt_A 430 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMR 492 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence 9999999999999999984 399999999999999999999999986 7888889886543
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=9.9e-48 Score=365.57 Aligned_cols=199 Identities=23% Similarity=0.246 Sum_probs=172.9
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
++++|+++.|++ ..|+.+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ ..++|+|
T Consensus 270 l~~~~l~~~~~~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-----------~~i~~~~ 336 (538)
T 3ozx_A 270 MKWTKIIKKLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK-----------QILSYKP 336 (538)
T ss_dssp EEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-----------CCEEEEC
T ss_pred EEEcceEEEECC--EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------eeeEeec
Confidence 367899999953 568889999999999999999999999999999999999999998754 3589999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
|+....+.+||.||+.+..... ... ....++++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 337 q~~~~~~~~tv~~~l~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT 413 (538)
T 3ozx_A 337 QRIFPNYDGTVQQYLENASKDA-LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS 413 (538)
T ss_dssp SSCCCCCSSBHHHHHHHHCSST-TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred hhcccccCCCHHHHHHHhhhhc-cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 9987666789999998742211 111 1235678899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeC--CEEEeecCH
Q psy7367 161 SGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAA--GKLQCCGSS 215 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~--G~i~~~g~~ 215 (251)
+|||+.++..++++|+++. .|.|||+||||++++..+||||++|++ |.....+++
T Consensus 414 ~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~ 472 (538)
T 3ozx_A 414 SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSP 472 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCC
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCCh
Confidence 9999999999999999984 489999999999999999999999986 455555554
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7.1e-47 Score=359.95 Aligned_cols=194 Identities=21% Similarity=0.285 Sum_probs=162.9
Q ss_pred EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE---------EEcceeCCCCh-H--H
Q psy7367 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA---------KIYNHDIRTDM-T--T 71 (251)
Q Consensus 4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i---------~~~g~~~~~~~-~--~ 71 (251)
+||+|+|++...+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++ .++|.++.... . .
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~ 103 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHT
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHH
Confidence 589999964225899999 999999999999999999999999999999999995 34555432111 1 1
Q ss_pred hhcceEEEccCCCCCCC---CCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 72 IRRSLGVCPQYNALFDK---LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 72 ~~~~i~~v~q~~~l~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
.+..+++++|...+++. .|+.|++... .. .++++++++.+|+.+..++++.+|||||||||+||+||+
T Consensus 104 ~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----~~-----~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~ 174 (538)
T 1yqt_A 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKA----DE-----TGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALL 174 (538)
T ss_dssp TSCCCEEECSCGGGSGGGCCSBHHHHHHHH----CS-----SSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhcchhhhccHHHHHhhh----hH-----HHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHh
Confidence 12468899997644332 3898887531 11 134778999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAG 207 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G 207 (251)
.+|++|||||||++||+.+++.++++|++++ +|.|||+||||++++..+|||+++|++|
T Consensus 175 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 175 RNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999985 5999999999999999999999999864
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=9e-47 Score=363.36 Aligned_cols=194 Identities=21% Similarity=0.303 Sum_probs=163.5
Q ss_pred EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE---------EEcceeCCCCh-H--H
Q psy7367 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA---------KIYNHDIRTDM-T--T 71 (251)
Q Consensus 4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i---------~~~g~~~~~~~-~--~ 71 (251)
+|++++|++...+|+++| +|++||+++|+||||||||||||+|+|+++|++|++ .++|.++.... . .
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~ 173 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhh
Confidence 799999964225899999 999999999999999999999999999999999996 34565442111 1 1
Q ss_pred hhcceEEEccCCCCCC---CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc
Q psy7367 72 IRRSLGVCPQYNALFD---KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI 148 (251)
Q Consensus 72 ~~~~i~~v~q~~~l~~---~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~ 148 (251)
.+..+++++|...+++ ..||.||+... .. .++++++++.+||.+..++++.+|||||||||+|||||+
T Consensus 174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~~-----~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~ 244 (607)
T 3bk7_A 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKKV----DE-----VGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALL 244 (607)
T ss_dssp TSCCCEEECSCGGGGGGTCCSBHHHHHHHT----CC-----SSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHH
T ss_pred hhcceEEeechhhhchhhccccHHHHhhhh----HH-----HHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHh
Confidence 2346889998753322 23899998641 11 134778999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAG 207 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G 207 (251)
.+|++|||||||++||+.++..++++|+++. +|.|||+||||++++..+|||+++|+++
T Consensus 245 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 245 RKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 9999999999999999999999999999985 5999999999999999999999999864
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-46 Score=358.13 Aligned_cols=199 Identities=21% Similarity=0.255 Sum_probs=171.1
Q ss_pred EeEEEEeCCCcceeeeeeEEEeCC-----cEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEE
Q psy7367 4 QNLSKRFPNGKLAVNGLNVNFYED-----QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGV 78 (251)
Q Consensus 4 ~~l~~~y~~~~~il~~isl~i~~G-----e~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 78 (251)
++++++|++...+++++||++.+| |+++|+||||||||||+|+|+|+++|++|+. +. +..++|
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~------~~~i~~ 417 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP------KLNVSM 417 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC------SCCEEE
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc------CCcEEE
Confidence 456778864356899999999999 7899999999999999999999999999962 21 246999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
+||+.......||.|++.... ..... ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 418 ~~q~~~~~~~~tv~e~~~~~~--~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDE 493 (608)
T 3j16_B 418 KPQKIAPKFPGTVRQLFFKKI--RGQFL--NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDE 493 (608)
T ss_dssp ECSSCCCCCCSBHHHHHHHHC--SSTTT--SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred ecccccccCCccHHHHHHHHh--hcccc--cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 999987666679999875422 22111 12356788999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeC--CEEEeecCHHHH
Q psy7367 159 PTSGVDPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAA--GKLQCCGSSVFL 218 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~--G~i~~~g~~~~~ 218 (251)
||+|||+.++..++++|+++. .|.|||+||||++++..+|||+++|++ |+++..|+|+++
T Consensus 494 PT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 494 PSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence 999999999999999999984 499999999999999999999999996 899999998654
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4e-45 Score=364.61 Aligned_cols=202 Identities=24% Similarity=0.290 Sum_probs=162.6
Q ss_pred CEEEeEEEEeCC-CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEE
Q psy7367 1 MAIQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79 (251)
Q Consensus 1 l~i~~l~~~y~~-~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 79 (251)
|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|. .+|+|+
T Consensus 672 L~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~----------~~I~yv 741 (986)
T 2iw3_A 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN----------CRIAYI 741 (986)
T ss_dssp EEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT----------CCEEEE
T ss_pred EEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc----------cceEee
Confidence 478999999964 257999999999999999999999999999999999999999999999752 136666
Q ss_pred ccCCCC----CCCCCHHHHHHHHHHh------------------------------------------------------
Q psy7367 80 PQYNAL----FDKLTVEEHMWFYSQL------------------------------------------------------ 101 (251)
Q Consensus 80 ~q~~~l----~~~ltv~e~l~~~~~~------------------------------------------------------ 101 (251)
+|++.. ....|+.+++.+....
T Consensus 742 ~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~ 821 (986)
T 2iw3_A 742 KQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSF 821 (986)
T ss_dssp CHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhh
Confidence 665421 1223555554331100
Q ss_pred -----------------------------------------------cCCChHHHHHHHHHHHHHcCCCc-c-cCCCCCc
Q psy7367 102 -----------------------------------------------KQVPKDLAQLEISNMIVDLGIPH-K-RTSLANT 132 (251)
Q Consensus 102 -----------------------------------------------~~~~~~~~~~~~~~~l~~~~l~~-~-~~~~~~~ 132 (251)
.+.......++++++++.+||.. . .++++.+
T Consensus 822 sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~ 901 (986)
T 2iw3_A 822 LLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRG 901 (986)
T ss_dssp EEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGG
T ss_pred hhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccc
Confidence 00000011346788999999985 3 5889999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC 212 (251)
Q Consensus 133 LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~ 212 (251)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||++++..+||++++|++|+++..
T Consensus 902 LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~ 979 (986)
T 2iw3_A 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPS 979 (986)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTTBCCC-
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999876 57999999999999999999999999999877
Q ss_pred cC
Q psy7367 213 GS 214 (251)
Q Consensus 213 g~ 214 (251)
|+
T Consensus 980 G~ 981 (986)
T 2iw3_A 980 GH 981 (986)
T ss_dssp --
T ss_pred CC
Confidence 64
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4e-44 Score=357.44 Aligned_cols=195 Identities=19% Similarity=0.201 Sum_probs=168.6
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEcc
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQ 81 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q 81 (251)
...|++++|+ ++.+|+++||+|++|++++|+||||||||||||+|+| |+| +|.+... ..+++|++|
T Consensus 437 ~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~-----~~~~~~v~q 502 (986)
T 2iw3_A 437 CNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE-----ECRTVYVEH 502 (986)
T ss_dssp EEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT-----TSCEEETTC
T ss_pred EEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc-----ceeEEEEcc
Confidence 4568999996 4789999999999999999999999999999999995 443 4443311 124789999
Q ss_pred CC-CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367 82 YN-ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159 (251)
Q Consensus 82 ~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP 159 (251)
++ .+++.+||.||+.+ ...+. .+++.++++.+|+. +..++++.+||||||||++|||||+.+|++||||||
T Consensus 503 ~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEP 575 (986)
T 2iw3_A 503 DIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP 575 (986)
T ss_dssp CCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred cccccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 85 67888999999976 22221 45688999999995 678999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEE-eecCHHHHH
Q psy7367 160 TSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ-CCGSSVFLK 219 (251)
Q Consensus 160 t~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 219 (251)
|++||+.+++.++++|++ .|.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus 576 Ts~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 576 TNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp TTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred ccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 999999999999999998 6899999999999999999999999999997 689887653
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=6e-45 Score=354.83 Aligned_cols=203 Identities=19% Similarity=0.283 Sum_probs=141.8
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHH---------------------HHHhCCCCCC-------eeEEEEccee
Q psy7367 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTI---------------------SMLMGMLPVS-------SGTAKIYNHD 64 (251)
Q Consensus 13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLl---------------------k~l~Gl~~p~-------~G~i~~~g~~ 64 (251)
.+.+|+||||+|++||++||+||||||||||+ ++++|+.+|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35799999999999999999999999999998 9999999998 4556666654
Q ss_pred CCCChHHhhcceEEEccCCC-------------------CCCCCCHHHHHHHHHHhcC--CChHHHH------HHHHHHH
Q psy7367 65 IRTDMTTIRRSLGVCPQYNA-------------------LFDKLTVEEHMWFYSQLKQ--VPKDLAQ------LEISNMI 117 (251)
Q Consensus 65 ~~~~~~~~~~~i~~v~q~~~-------------------l~~~ltv~e~l~~~~~~~~--~~~~~~~------~~~~~~l 117 (251)
... ..++.+++++|.+. .++.+||+||+.++..... ....... ....+++
T Consensus 110 ~~~---~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 110 TSR---NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred hhc---cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 422 11334555555332 3467899999987533211 0000000 1122458
Q ss_pred HHcCCCcc-cCCCCCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHH
Q psy7367 118 VDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGSR--TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDE 193 (251)
Q Consensus 118 ~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~~~p~--llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~ 193 (251)
+.+||.+. .++++.+|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|++++ +|.|||+||||++.
T Consensus 187 ~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 187 QNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 266 (670)
T ss_dssp HHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 89999865 689999999999999999999999998 999999999999999999999999985 59999999999998
Q ss_pred HHhhcCEEEEe------eCCEEEeecCHHHHH
Q psy7367 194 ADLLGDRIAII------AAGKLQCCGSSVFLK 219 (251)
Q Consensus 194 ~~~~~d~i~~l------~~G~i~~~g~~~~~~ 219 (251)
+. .|||+++| ++|++++.|+++++.
T Consensus 267 ~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 267 ML-AADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HH-HCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred Hh-hCCEEEEecccccccCCEEEEecCHHHHh
Confidence 76 59999999 899999999987664
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-43 Score=336.64 Aligned_cols=196 Identities=19% Similarity=0.278 Sum_probs=154.3
Q ss_pred eEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-----------EcceeCCCC-hHHh
Q psy7367 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-----------IYNHDIRTD-MTTI 72 (251)
Q Consensus 5 ~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~-----------~~g~~~~~~-~~~~ 72 (251)
|++++|+.+...|++++ ++++||++||+||||||||||||+|+|+++|++|+|. +.|.++... ....
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 68999975556788877 6999999999999999999999999999999999982 333322110 0111
Q ss_pred hcce--EEEccCCCC------CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHH
Q psy7367 73 RRSL--GVCPQYNAL------FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVA 144 (251)
Q Consensus 73 ~~~i--~~v~q~~~l------~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia 144 (251)
...+ .+.+|.... .+..++.+++... .. ...++++++++.+++.+..++++.+|||||||||+||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~---~~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iA 233 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR---ME----KSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIG 233 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH---CC----SCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHH
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh---hh----hHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHH
Confidence 2222 233443211 1123555555431 11 1124688999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367 145 MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGK 208 (251)
Q Consensus 145 ~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l~~G~ 208 (251)
+||+.+|++|||||||++||+.++..++++|++++ +|.|||+||||++++..+|||+++|++|.
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999999999999999996 49999999999999999999999998764
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.4e-42 Score=330.16 Aligned_cols=192 Identities=23% Similarity=0.277 Sum_probs=155.2
Q ss_pred EeEEEEeCCCcceeeeeeEEEe-CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE-----------EEcceeCCCChHH
Q psy7367 4 QNLSKRFPNGKLAVNGLNVNFY-EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA-----------KIYNHDIRTDMTT 71 (251)
Q Consensus 4 ~~l~~~y~~~~~il~~isl~i~-~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i-----------~~~g~~~~~~~~~ 71 (251)
++.+.+|+.+ -++-..|.+. +||++||+||||||||||+|+|+|+++|++|+| .++|+++......
T Consensus 3 ~~~~~~~~~~--~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 3 GEVIHRYKVN--GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp CCEEEESSTT--SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CCCceecCCC--ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 4678999643 4566666554 899999999999999999999999999999998 5677665321111
Q ss_pred -h--hcceEEEccC----CCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHH
Q psy7367 72 -I--RRSLGVCPQY----NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVA 144 (251)
Q Consensus 72 -~--~~~i~~v~q~----~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia 144 (251)
. ...+...+|. +.++. .++.+++... . ..++++++++.+++....++++.+|||||||||+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~l~~~----~-----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA 150 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLK-GTVNEILTKI----D-----ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVA 150 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCC-SBHHHHHHHH----C-----CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHH
T ss_pred Hhhcccchhhccchhhhhhhhcc-CcHHHHhhcc----h-----hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 1 1234444444 33333 4788765421 1 112467889999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367 145 MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG 207 (251)
Q Consensus 145 ~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G 207 (251)
|||+.+|++|||||||++||+.++..++++|+++++|.|||+||||++++..+||+|++|++|
T Consensus 151 ~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 151 ASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCC
Confidence 999999999999999999999999999999999976999999999999999999999999865
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2e-41 Score=330.07 Aligned_cols=199 Identities=22% Similarity=0.322 Sum_probs=155.1
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh----------------------CCCCCCeeEEEEcceeCCCChH-
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM----------------------GMLPVSSGTAKIYNHDIRTDMT- 70 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~----------------------Gl~~p~~G~i~~~g~~~~~~~~- 70 (251)
..+|+||||+|++||+++|+||||||||||+++|+ |+..+ +|.|.+++.++.....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 46899999999999999999999999999998754 44444 4688888887642110
Q ss_pred ---Hh--------------------------------------hcceEEEccCCCCCC----------------------
Q psy7367 71 ---TI--------------------------------------RRSLGVCPQYNALFD---------------------- 87 (251)
Q Consensus 71 ---~~--------------------------------------~~~i~~v~q~~~l~~---------------------- 87 (251)
.. ....|+++|+..+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 00 011234444333222
Q ss_pred ----------CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCC---CE
Q psy7367 88 ----------KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGS---RT 153 (251)
Q Consensus 88 ----------~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p---~l 153 (251)
.+||.||+.++... . ..++..++++.+++.. ..++++.+|||||||||+|||||+.+| ++
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~----~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~l 567 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI----P--KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTL 567 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC----H--HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEE
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh----h--hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcE
Confidence 47999999875421 1 1235667888999974 568899999999999999999999887 59
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHHh
Q psy7367 154 VILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLKN 220 (251)
Q Consensus 154 lllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~~ 220 (251)
|||||||+|||+.++..++++|++++ +|.|||+||||++.+. .||||++| ++|++++.|+++++.+
T Consensus 568 lllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 568 YILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 99999999999999999999999985 5999999999999885 69999999 8999999999988754
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=4.5e-39 Score=318.05 Aligned_cols=207 Identities=23% Similarity=0.361 Sum_probs=158.6
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHH-HhCCC-------CC------------------C
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISM-LMGML-------PV------------------S 54 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~-l~Gl~-------~p------------------~ 54 (251)
|+++|+++ .+|+||||+|++||+++|+|+||||||||+++ |+|++ +| .
T Consensus 503 L~v~~l~~------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 576 (842)
T 2vf7_A 503 LELNGVTR------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARL 576 (842)
T ss_dssp EEEEEEEE------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEE
T ss_pred EEEEeeee------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccc
Confidence 45677764 25999999999999999999999999999996 76543 23 4
Q ss_pred ee-------EEEEcceeCCCCh-----------HHhh---------cceEEEccC----------------------CCC
Q psy7367 55 SG-------TAKIYNHDIRTDM-----------TTIR---------RSLGVCPQY----------------------NAL 85 (251)
Q Consensus 55 ~G-------~i~~~g~~~~~~~-----------~~~~---------~~i~~v~q~----------------------~~l 85 (251)
+| .|.+++.++.... ..+| +.+||.++. ..+
T Consensus 577 ~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f 656 (842)
T 2vf7_A 577 GGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLF 656 (842)
T ss_dssp EESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCS
T ss_pred cCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhc
Confidence 67 6888988774211 1111 112332221 111
Q ss_pred C------------------------CCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCc
Q psy7367 86 F------------------------DKLT--------VEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANT 132 (251)
Q Consensus 86 ~------------------------~~lt--------v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~ 132 (251)
+ ...+ +.|++.|+. . .. ..+++.++++.++|.. ..++++.+
T Consensus 657 ~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~---~-~~--~~~~~~~~L~~~gL~~~~l~~~~~~ 730 (842)
T 2vf7_A 657 LPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFA---D-ES--AIFRALDTLREVGLGYLRLGQPATE 730 (842)
T ss_dssp SSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT---T-SH--HHHHHHHHHHHTTCTTSBTTCCGGG
T ss_pred CCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhh---c-ch--HHHHHHHHHHHcCCCcccccCCccc
Confidence 1 1234 444444321 1 11 2246789999999987 46899999
Q ss_pred CChhHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe----
Q psy7367 133 LSGGMQRKLSVAMAFIGG---SRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII---- 204 (251)
Q Consensus 133 LSgG~kqrv~ia~al~~~---p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l---- 204 (251)
|||||||||+||++|+.+ |++|||||||+|||+..++.++++|+++. +|.|||++|||++++ ..||||++|
T Consensus 731 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~p~~ 809 (842)
T 2vf7_A 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIGPGA 809 (842)
T ss_dssp CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSS
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCC
Confidence 999999999999999996 79999999999999999999999999985 699999999999999 689999999
Q ss_pred --eCCEEEeecCHHHHHh
Q psy7367 205 --AAGKLQCCGSSVFLKN 220 (251)
Q Consensus 205 --~~G~i~~~g~~~~~~~ 220 (251)
++|++++.|+++++..
T Consensus 810 g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 810 GEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp GGGCCSEEEEECHHHHTT
T ss_pred CCCCCEEEEEcCHHHHHh
Confidence 7999999999987643
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1.1e-38 Score=316.55 Aligned_cols=199 Identities=22% Similarity=0.319 Sum_probs=157.8
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-CCC-------CCCee-------------EEEEcceeCCCC----h
Q psy7367 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM-GML-------PVSSG-------------TAKIYNHDIRTD----M 69 (251)
Q Consensus 15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~-Gl~-------~p~~G-------------~i~~~g~~~~~~----~ 69 (251)
.+|+||||+|++||++||+|+||||||||+++|+ |.+ .+..| .|.+++.++... .
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence 3699999999999999999999999999999853 221 12233 478888776421 1
Q ss_pred H-------Hh---------hcceEEEccCCCCCC----------------------------------------------
Q psy7367 70 T-------TI---------RRSLGVCPQYNALFD---------------------------------------------- 87 (251)
Q Consensus 70 ~-------~~---------~~~i~~v~q~~~l~~---------------------------------------------- 87 (251)
. .+ .+.+||++|.+.+.+
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence 0 01 134688887543310
Q ss_pred --------CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCC---CEEE
Q psy7367 88 --------KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGS---RTVI 155 (251)
Q Consensus 88 --------~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p---~lll 155 (251)
.+|+.|++.|+... .. ..++.++++.++|.. ..++++.+|||||||||+||++|+.+| ++||
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~~----~~--~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLI 871 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFASI----PK--IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYI 871 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCSC----HH--HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEE
T ss_pred CCCHHHhhhcCHHHHHHHHhcc----hh--HHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 35777887764321 11 234568999999987 789999999999999999999999875 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHHh
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLKN 220 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~~ 220 (251)
|||||+|||+.++..++++|+++. +|.|||++|||++++. .|||+++| ++|++++.|+++++..
T Consensus 872 LDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 872 LDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 999999999999999999999985 6999999999999984 79999999 7899999999987754
No 62
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=6.5e-38 Score=311.99 Aligned_cols=198 Identities=25% Similarity=0.364 Sum_probs=154.4
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-C----CCC---CCeeE-------------EEEcceeCCC----ChH
Q psy7367 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM-G----MLP---VSSGT-------------AKIYNHDIRT----DMT 70 (251)
Q Consensus 16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~-G----l~~---p~~G~-------------i~~~g~~~~~----~~~ 70 (251)
+|+||||+|++|++++|+|+||||||||+++|+ | .+. +..|. |.+++.++.. +..
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 699999999999999999999999999999853 2 121 23443 4555555521 110
Q ss_pred -------Hh---------hcceEEEccCCCCC----------------------C-------------------------
Q psy7367 71 -------TI---------RRSLGVCPQYNALF----------------------D------------------------- 87 (251)
Q Consensus 71 -------~~---------~~~i~~v~q~~~l~----------------------~------------------------- 87 (251)
.+ .+.+||++|.+.+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 01 13457777754321 1
Q ss_pred -------CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCC---CEEEE
Q psy7367 88 -------KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGS---RTVIL 156 (251)
Q Consensus 88 -------~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p---~llll 156 (251)
.+|+.|++.|+... .. ..+..++++.++|.. ..++++.+|||||||||+||++|+.+| ++|||
T Consensus 817 ~si~dvl~ltv~e~l~~~~~~----~~--~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLIL 890 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEPI----AG--VHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYIL 890 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTTC----HH--HHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEE
T ss_pred CCHHHHhhccHHHHHHHhhcc----hH--HHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 25677777664321 11 234568999999987 678999999999999999999999875 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHHh
Q psy7367 157 DEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLKN 220 (251)
Q Consensus 157 DEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~~ 220 (251)
||||+|||+..+..++++|+++. +|.|||++|||++++ ..|||+++| ++|++++.|+++++..
T Consensus 891 DEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 891 DEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 99999999999999999999985 699999999999998 579999999 7899999999987643
No 63
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-37 Score=307.06 Aligned_cols=200 Identities=22% Similarity=0.309 Sum_probs=157.6
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHH---------HHHhCCCCCC------ee------EEEEcceeCCCC----
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTI---------SMLMGMLPVS------SG------TAKIYNHDIRTD---- 68 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLl---------k~l~Gl~~p~------~G------~i~~~g~~~~~~---- 68 (251)
...|+||||+|++|++++|+||||||||||+ +++.+...+. +| .+.++..++...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 4555544333 23 244444443210
Q ss_pred hH-------H-------------------------------hhcceEEEccCCCCCC-----------------------
Q psy7367 69 MT-------T-------------------------------IRRSLGVCPQYNALFD----------------------- 87 (251)
Q Consensus 69 ~~-------~-------------------------------~~~~i~~v~q~~~l~~----------------------- 87 (251)
.. . ..+..|+++++..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 00 0 0124577777766554
Q ss_pred ---------CCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCC---CEE
Q psy7367 88 ---------KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGS---RTV 154 (251)
Q Consensus 88 ---------~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p---~ll 154 (251)
.+||.|++.|+... ....++.++|+.+||.. ..++++.+|||||||||+|||||+.+| ++|
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~------~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LL 830 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI------PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLY 830 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC------HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEE
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc------hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEE
Confidence 36788888775321 12345778999999975 458899999999999999999999875 799
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHHh
Q psy7367 155 ILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLKN 220 (251)
Q Consensus 155 llDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~~ 220 (251)
||||||+|||+.+++.++++|.++. +|.|||+||||++++.. ||+|++| ++|+|++.|+++++..
T Consensus 831 ILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 831 ILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 9999999999999999999999985 69999999999999865 9999999 8999999999988754
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-42 Score=323.80 Aligned_cols=182 Identities=14% Similarity=0.144 Sum_probs=153.9
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee-E-EEEcceeCCCChHHhhcceEEEccCCC---CCCCCCHHH
Q psy7367 19 GLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG-T-AKIYNHDIRTDMTTIRRSLGVCPQYNA---LFDKLTVEE 93 (251)
Q Consensus 19 ~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G-~-i~~~g~~~~~~~~~~~~~i~~v~q~~~---l~~~ltv~e 93 (251)
++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|. .++.++|+||+.. +++.+|++|
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~--------~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD--------PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC--------TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC--------ccCCeeeeccchhhcccccccchhh
Confidence 79999999999999999999999999999999999999 9 999982 2567999999984 345679999
Q ss_pred HHHHHHHh-cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHH--HccCCCE----EEEeC-CCCCCCH
Q psy7367 94 HMWFYSQL-KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMA--FIGGSRT----VILDE-PTSGVDP 165 (251)
Q Consensus 94 ~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~a--l~~~p~l----lllDE-Pt~gLD~ 165 (251)
|+ |+... .+... .+++.++++.+|+.+..+ +.+|||||||||+|||| |+.+|++ ||||| ||++||+
T Consensus 202 ni-~~~~~~~~~~~---~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~ 275 (460)
T 2npi_A 202 PT-WGQSLTSGATL---LHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDE 275 (460)
T ss_dssp TT-CSCBCBSSCCS---SCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCS
T ss_pred hh-cccccccCcch---HHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccCh
Confidence 98 64432 12111 124566788899987765 88999999999999999 9999999 99999 9999999
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEeCCHH------HHHhhcCE-----EEEee-CCEEEeecCHHHH
Q psy7367 166 YSRRSIWELLIKYKKGRTVILTTHYMD------EADLLGDR-----IAIIA-AGKLQCCGSSVFL 218 (251)
Q Consensus 166 ~~~~~l~~~l~~l~~g~tiii~tHd~~------~~~~~~d~-----i~~l~-~G~i~~~g~~~~~ 218 (251)
. ++.+.++++++ +.|+|++|||.+ ++..+||| +++|+ +|+++ .|+++.+
T Consensus 276 ~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 276 N-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp S-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred h-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 9 66666666654 688999999987 88899999 99999 99999 8988655
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=1.5e-36 Score=279.05 Aligned_cols=196 Identities=18% Similarity=0.254 Sum_probs=149.1
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--------------------------------------CCe
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP--------------------------------------VSS 55 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~--------------------------------------p~~ 55 (251)
..++++++|+|++| +++|+|||||||||||++|+++.. +.+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45799999999999 999999999999999999977764 457
Q ss_pred eEEEEcceeCCC-ChHHhh-cceEEEccCCCCCCCCCHHHHHHHHHHhcC----------------------CC------
Q psy7367 56 GTAKIYNHDIRT-DMTTIR-RSLGVCPQYNALFDKLTVEEHMWFYSQLKQ----------------------VP------ 105 (251)
Q Consensus 56 G~i~~~g~~~~~-~~~~~~-~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~----------------------~~------ 105 (251)
|+++++|+++.. ....+. ..+++++|+..++.. +..+...|.-.... ..
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 899999999863 223333 348999999876543 55544433211100 00
Q ss_pred --------------------------------hHHHHHHHHHHHHHcCCCcc-----------------------cC---
Q psy7367 106 --------------------------------KDLAQLEISNMIVDLGIPHK-----------------------RT--- 127 (251)
Q Consensus 106 --------------------------------~~~~~~~~~~~l~~~~l~~~-----------------------~~--- 127 (251)
.......+.+.++.+++... ..
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 00112334555666665430 11
Q ss_pred ----CCCCc-CChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCE
Q psy7367 128 ----SLANT-LSGGMQRKLSVAMAFIGGS--RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDR 200 (251)
Q Consensus 128 ----~~~~~-LSgG~kqrv~ia~al~~~p--~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~ 200 (251)
+++.. ||||||||++||++|+.+| ++|||||||+|||+..+..+.++|+++.+|.|||+|||+++.+ .+||+
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~ 364 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHH 364 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSE
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCe
Confidence 22333 6999999999999999999 9999999999999999999999999998899999999999776 57999
Q ss_pred EEEe----eCCEEEee
Q psy7367 201 IAII----AAGKLQCC 212 (251)
Q Consensus 201 i~~l----~~G~i~~~ 212 (251)
+++| ++|+++..
T Consensus 365 i~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 365 HYKVEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEEEEETTEEEEE
T ss_pred EEEEEEeccCCceEEE
Confidence 9999 99998754
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=100.00 E-value=3e-33 Score=254.58 Aligned_cols=84 Identities=24% Similarity=0.294 Sum_probs=78.3
Q ss_pred CCCCCcCChhHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcC
Q psy7367 127 TSLANTLSGGMQRKLSVAMAFI------GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGD 199 (251)
Q Consensus 127 ~~~~~~LSgG~kqrv~ia~al~------~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d 199 (251)
++++.+|||||||||+||+||+ .+|++|||||||++||+..+..++++|++++ .|.|||+||||++. ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5688999999999999999999 7999999999999999999999999999985 59999999999998 56799
Q ss_pred EEEEeeCCEEEe
Q psy7367 200 RIAIIAAGKLQC 211 (251)
Q Consensus 200 ~i~~l~~G~i~~ 211 (251)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=100.00 E-value=1.7e-37 Score=262.07 Aligned_cols=159 Identities=19% Similarity=0.174 Sum_probs=108.3
Q ss_pred EEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCC
Q psy7367 8 KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87 (251)
Q Consensus 8 ~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~ 87 (251)
|+|+ ++.+|+++ ++||+++|+||||||||||+|+|+|+ +|++|+|.. .++.......++.+||+||++
T Consensus 8 k~~g-~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~---- 75 (208)
T 3b85_A 8 KTLG-QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTRPAVEAGEKLGFLPGTL---- 75 (208)
T ss_dssp CSHH-HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEECSCCTTCCCCSSCC------
T ss_pred CCHh-HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecCCchhhhcceEEecCCH----
Confidence 3453 36789996 89999999999999999999999999 999999953 222211123467899999986
Q ss_pred CCCHHHHH-HHH----HHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy7367 88 KLTVEEHM-WFY----SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162 (251)
Q Consensus 88 ~ltv~e~l-~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~g 162 (251)
+||+ .+. ..+..... .++++++++. ++ ||||||+|||||+.+|++|||||||++
T Consensus 76 ----~enl~~~~~~~~~~~~~~~~---~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 76 ----NEKIDPYLRPLHDALRDMVE---PEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp --------CTTTHHHHHHHTTTSC---TTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred ----HHHHHHHHHHHHHHHHHhcc---HHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 3444 221 11111111 1345666665 44 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367 163 VDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208 (251)
Q Consensus 163 LD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~ 208 (251)
++..++++|+++.+|+||| +|||++++.. ...+++|.
T Consensus 135 ----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~----~~~~~~G~ 171 (208)
T 3b85_A 135 ----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL----PGGQKSGL 171 (208)
T ss_dssp ----CHHHHHHHHTTBCTTCEEE-EEEC----------------CC
T ss_pred ----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence 8999999999884589999 9999987653 33345664
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-32 Score=245.20 Aligned_cols=190 Identities=20% Similarity=0.257 Sum_probs=128.1
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC----------------------------------------------
Q psy7367 18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML---------------------------------------------- 51 (251)
Q Consensus 18 ~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~---------------------------------------------- 51 (251)
+++++++.+| +++|+||||||||||+++|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 5678999999 99999999999999999999543
Q ss_pred ----CCCeeEEEEcceeCCC-ChHHhhcceEEEccCCCCCCCCCHHHHHHHHHH------------hcC-CChHH-----
Q psy7367 52 ----PVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ------------LKQ-VPKDL----- 108 (251)
Q Consensus 52 ----~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~------------~~~-~~~~~----- 108 (251)
++.+|.++++|+++.. ........+++.||+..+++.-++.+++..... ... ...+.
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2345788899987642 122334456665555443322222222211000 000 00000
Q ss_pred ----------------HHHHHHHHHHH-cCC----CcccCCCCCcCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCC
Q psy7367 109 ----------------AQLEISNMIVD-LGI----PHKRTSLANTLSGGMQRKLSVAMAFI----GGSRTVILDEPTSGV 163 (251)
Q Consensus 109 ----------------~~~~~~~~l~~-~~l----~~~~~~~~~~LSgG~kqrv~ia~al~----~~p~llllDEPt~gL 163 (251)
...++.++++. +++ .+..++++.+||+|||||++||+||+ .+|+++||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 01111223332 111 23356788999999999999999997 689999999999999
Q ss_pred CHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEE--EEeeCCEE
Q psy7367 164 DPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRI--AIIAAGKL 209 (251)
Q Consensus 164 D~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i--~~l~~G~i 209 (251)
|+..++.++++++++.++.+||++||+++ +..+||++ ++|.+|..
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEEEEEESSSCE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEEEEEEeCCEE
Confidence 99999999999999876899999999965 56789987 88888854
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.97 E-value=7.5e-33 Score=226.12 Aligned_cols=146 Identities=12% Similarity=0.124 Sum_probs=105.9
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCC-CCCCHHHHHHH
Q psy7367 19 GLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALF-DKLTVEEHMWF 97 (251)
Q Consensus 19 ~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~-~~ltv~e~l~~ 97 (251)
|+||++++||+++|+||||||||||+|++.+ |...+. ...++ ++++|++.-. ..-++++++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~-------~d~~~---g~~~~~~~~~~~~~~~~~~~~~ 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS-------SDFCR---GLMSDDENDQTVTGAAFDVLHY 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE-------HHHHH---HHHCSSTTCGGGHHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc-------cHHHH---HHhcCcccchhhHHHHHHHHHH
Confidence 6899999999999999999999999999653 111111 12222 6777765311 10112222211
Q ss_pred HHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----------
Q psy7367 98 YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY----------- 166 (251)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~----------- 166 (251)
.. ......+.....+ .....|+|||||++||+|++.+|++|+|||||++||+.
T Consensus 65 --------------~~-~~~~~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~ 128 (171)
T 4gp7_A 65 --------------IV-SKRLQLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEE 128 (171)
T ss_dssp --------------HH-HHHHHTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCH
T ss_pred --------------HH-HHHHhCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCH
Confidence 11 1222345554444 34566999999999999999999999999999999999
Q ss_pred -----HHHHHHHHHHhhh-CCCeEEEEeCCHHHHHh
Q psy7367 167 -----SRRSIWELLIKYK-KGRTVILTTHYMDEADL 196 (251)
Q Consensus 167 -----~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~ 196 (251)
.+..+++.+++++ +|.|+|++|||++++..
T Consensus 129 ~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 129 YVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 5688899988875 59999999999999976
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.97 E-value=5.3e-35 Score=269.49 Aligned_cols=175 Identities=12% Similarity=0.087 Sum_probs=144.6
Q ss_pred cceeeeeeEEEeCCc--------------------EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhh
Q psy7367 14 KLAVNGLNVNFYEDQ--------------------ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIR 73 (251)
Q Consensus 14 ~~il~~isl~i~~Ge--------------------~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 73 (251)
+.+|++|||+|++|+ +++|+||||||||||+|+|+|+.+|++|+|.++|.++. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc------e
Confidence 468999999999999 99999999999999999999999999999999887652 1
Q ss_pred cceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChh--HHHHHHHHHHHcc--
Q psy7367 74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGG--MQRKLSVAMAFIG-- 149 (251)
Q Consensus 74 ~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG--~kqrv~ia~al~~-- 149 (251)
.++++|++ .++.+|+.|++.++.. +.+++++++.+++.+.. ..+. ||+| |+||++||+||+.
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~~---------~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~~~ 175 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGST---------NFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISMMK 175 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGGS---------SCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHHTT
T ss_pred --eEEecccc-ccCCeeehHhhcccch---------HHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHhcC
Confidence 27899985 5678899998755421 12467889999987653 3343 9999 9999999999999
Q ss_pred --------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhh------C----CCeEEEEeCCHHH--HHhhcCEEE-EeeCCE
Q psy7367 150 --------GSRTVILDEPTSGVDPYSRRSIWELLIKYK------K----GRTVILTTHYMDE--ADLLGDRIA-IIAAGK 208 (251)
Q Consensus 150 --------~p~llllDEPt~gLD~~~~~~l~~~l~~l~------~----g~tiii~tHd~~~--~~~~~d~i~-~l~~G~ 208 (251)
+|++++|||||+|||+..++.+++.++++. . ..+|+++||+++. ++++||++. .|..|+
T Consensus 176 ~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 176 KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 999999999999999999999999998862 2 2678999999988 999999884 455554
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.97 E-value=1.3e-35 Score=249.16 Aligned_cols=175 Identities=10% Similarity=0.048 Sum_probs=128.7
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEccCCCCCCCCCHH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVE 92 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~ 92 (251)
..+++| .+|++||+++|+||||||||||+|+|+|+++. +.+++..... .....++.++|+||++.+|+.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 467888 79999999999999999999999999999863 3443321111 1112356799999999888888888
Q ss_pred HHHHHHH------HhcCCChHHHHHHHHHH------HHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 93 EHMWFYS------QLKQVPKDLAQLEISNM------IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 93 e~l~~~~------~~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
+++..+. ..++.+..+.++++.+. ++.+++....++++.+|| ||+.+|++++|||||
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~ 151 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARL 151 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHH
Confidence 8764321 22344444555566665 666777777778888898 999999999999999
Q ss_pred CCC----CHHHHHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEee
Q psy7367 161 SGV----DPYSRRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIA 205 (251)
Q Consensus 161 ~gL----D~~~~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~ 205 (251)
+++ |+..++.+++++++++ .|.|+|++|||++++..+|||+++|.
T Consensus 152 ~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 152 IGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 998 7889999999999985 38999999999999999999999884
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.97 E-value=2.7e-32 Score=224.85 Aligned_cols=147 Identities=12% Similarity=0.048 Sum_probs=109.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChH
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD 107 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~ 107 (251)
.++|+||||||||||+|+|+|++. |.++|.+.... ....++.+||++|++ ++.+++ + ..+. .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~-~--- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF-F--- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT-C---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc-C---
Confidence 689999999999999999999985 45566543211 113457899999986 222222 1 1110 0
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhhhC
Q psy7367 108 LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMA-----FIGGSRTVILDE--PTSGVDPYSRRSIWELLIKYKK 180 (251)
Q Consensus 108 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~a-----l~~~p~llllDE--Pt~gLD~~~~~~l~~~l~~l~~ 180 (251)
.-.+..++++.+||||||||++||+| ++.+|+++|||| ||++||+..++.+.+++.+ .
T Consensus 65 -------------~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~ 129 (178)
T 1ye8_A 65 -------------TSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--P 129 (178)
T ss_dssp -------------CCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--T
T ss_pred -------------CccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--C
Confidence 00145678899999999999999996 999999999999 9999999999999998876 4
Q ss_pred CCeEEEEe---CCHHHHHhhcCEEEEeeCCEEEe
Q psy7367 181 GRTVILTT---HYMDEADLLGDRIAIIAAGKLQC 211 (251)
Q Consensus 181 g~tiii~t---Hd~~~~~~~~d~i~~l~~G~i~~ 211 (251)
+.|+|++| ||.+++..+|+| .+|+++.
T Consensus 130 ~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 130 NVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred CCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 67788888 599999999997 4566654
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.97 E-value=1.6e-32 Score=243.90 Aligned_cols=175 Identities=18% Similarity=0.195 Sum_probs=144.2
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----HHh--hcceEEEccCCC-CCCC
Q psy7367 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----TTI--RRSLGVCPQYNA-LFDK 88 (251)
Q Consensus 17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~--~~~i~~v~q~~~-l~~~ 88 (251)
+.++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... ..+ +..|+|++|++. +++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 46789999999999999999999999999999999999999999999875421 122 357999999998 8888
Q ss_pred CCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHH
Q psy7367 89 LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR--TVILDEPTSGVDPY 166 (251)
Q Consensus 89 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~--llllDEPt~gLD~~ 166 (251)
+|++||+.++.. .+.. ..+++.+|+.+..++++.+|| |||++||||++.+|+ +|+|| ||+|||+.
T Consensus 170 ~~v~e~l~~~~~-~~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~ 236 (302)
T 3b9q_A 170 TVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML 236 (302)
T ss_dssp HHHHHHHHHHHH-TTCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGH
T ss_pred HHHHHHHHHHHH-cCCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHH
Confidence 999999987542 1111 134677888877778899999 999999999999999 99999 99999998
Q ss_pred HHHHHHHHHHhhh--CCCeEEEEeC---------CHHHHHhhcCEEEEeeCCEEE
Q psy7367 167 SRRSIWELLIKYK--KGRTVILTTH---------YMDEADLLGDRIAIIAAGKLQ 210 (251)
Q Consensus 167 ~~~~l~~~l~~l~--~g~tiii~tH---------d~~~~~~~~d~i~~l~~G~i~ 210 (251)
.+. +++. .|.|+|++|| .++.+...++.|.++..|+.+
T Consensus 237 ~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 237 PQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp HHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred HHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 652 3443 3899999999 667787888999999999753
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.96 E-value=1.4e-32 Score=255.46 Aligned_cols=191 Identities=14% Similarity=0.122 Sum_probs=155.2
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcce---eCCC------ChHH
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH---DIRT------DMTT 71 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~---~~~~------~~~~ 71 (251)
++++++++.|+.+..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|++|.|.++|+ ++.. ....
T Consensus 132 l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~ 210 (438)
T 2dpy_A 132 LQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDG 210 (438)
T ss_dssp TTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHH
T ss_pred eEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccc
Confidence 35678999996347799999 999999999999999999999999999999999999999998 4421 0234
Q ss_pred hhcceEEEccC-CCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccC
Q psy7367 72 IRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGG 150 (251)
Q Consensus 72 ~~~~i~~v~q~-~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~ 150 (251)
+++.++|++|. ..+++.+|+.+|+.+..++..... + ......+ .+..||+|| ||++|| +.+
T Consensus 211 l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~----~---------~v~~~ld-~l~~lS~g~-qrvslA---l~~ 272 (438)
T 2dpy_A 211 RARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG----Q---------HVLLIMD-SLTRYAMAQ-REIALA---IGE 272 (438)
T ss_dssp HHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT----C---------EEEEEEE-CHHHHHHHH-HHHHHH---TTC
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC----C---------CHHHHHH-hHHHHHHHH-HHHHHH---hCC
Confidence 56789999995 556778899999988655321100 0 1111222 367899999 999999 889
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhhhC-----CC-----eEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 151 SRTVILDEPTSGVDPYSRRSIWELLIKYKK-----GR-----TVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 151 p~llllDEPt~gLD~~~~~~l~~~l~~l~~-----g~-----tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
|++ |+|||+..+..+.+++.++.+ |. ||+++|||++ ..+||++++|.+|+++.++++.++
T Consensus 273 p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 273 PPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp CCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred Ccc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHc
Confidence 988 999999999999999998743 64 9999999999 678999999999999999887654
No 75
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.96 E-value=1.3e-34 Score=257.21 Aligned_cols=163 Identities=12% Similarity=0.066 Sum_probs=129.4
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEcc
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQ 81 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q 81 (251)
+++||+++|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|. +|++|
T Consensus 103 ~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~-----------------~~v~q 160 (305)
T 2v9p_A 103 NYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL-----------------SFANH 160 (305)
T ss_dssp HHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE-----------------CGGGT
T ss_pred EEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE-----------------EEecC
Confidence 4578889995 67999999999999999999999999999999999998 79883 46678
Q ss_pred CCCCCCCCCHHH-HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC
Q psy7367 82 YNALFDKLTVEE-HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160 (251)
Q Consensus 82 ~~~l~~~ltv~e-~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt 160 (251)
++.+|.. |+++ |+.+... .. ..+.+.++.+ +....+ +..|||||||| ||||+.+|++|| |
T Consensus 161 ~~~lf~~-ti~~~ni~~~~~---~~-----~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----T 221 (305)
T 2v9p_A 161 KSHFWLA-SLADTRAALVDD---AT-----HACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----T 221 (305)
T ss_dssp TSGGGGG-GGTTCSCEEEEE---EC-----HHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----E
T ss_pred ccccccc-cHHHHhhccCcc---cc-----HHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----E
Confidence 8777764 7776 7765311 11 1344556664 444444 78999999999 999999999999 9
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHHh
Q psy7367 161 SGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 220 (251)
|+||+.+...+.. .||++..+ ..||+| +|++|++++.|+++++..
T Consensus 222 s~LD~~~~~~i~~-------------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el~~ 266 (305)
T 2v9p_A 222 SNIDVQAEDRYLY-------------LHSRVQTF-RFEQPC-TDESGEQPFNITDADWKS 266 (305)
T ss_dssp ESSCSTTCGGGGG-------------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHHHH
T ss_pred CCCCHHHHHHHHH-------------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHHHH
Confidence 9999999888862 18998875 579999 999999999999988743
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.96 E-value=5.8e-31 Score=238.62 Aligned_cols=174 Identities=18% Similarity=0.199 Sum_probs=144.7
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----HHh--hcceEEEccCCC-CCCCC
Q psy7367 18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----TTI--RRSLGVCPQYNA-LFDKL 89 (251)
Q Consensus 18 ~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~--~~~i~~v~q~~~-l~~~l 89 (251)
..+||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... ..+ +..|+|++|++. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 5789999999999999999999999999999999999999999999875421 122 457999999988 88889
Q ss_pred CHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHH
Q psy7367 90 TVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR--TVILDEPTSGVDPYS 167 (251)
Q Consensus 90 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~--llllDEPt~gLD~~~ 167 (251)
|++||+.++.. .+.. ..+++.+|+.+..++++.+|| |||++||||++.+|+ +|+|| ||+|||+..
T Consensus 228 tv~e~l~~~~~-~~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~ 294 (359)
T 2og2_A 228 VLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 294 (359)
T ss_dssp HHHHHHHHHHH-TTCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred hHHHHHHHHHh-CCCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH
Confidence 99999987643 1111 134667788877778899999 999999999999999 99999 999999986
Q ss_pred HHHHHHHHHhhh--CCCeEEEEeC---------CHHHHHhhcCEEEEeeCCEEE
Q psy7367 168 RRSIWELLIKYK--KGRTVILTTH---------YMDEADLLGDRIAIIAAGKLQ 210 (251)
Q Consensus 168 ~~~l~~~l~~l~--~g~tiii~tH---------d~~~~~~~~d~i~~l~~G~i~ 210 (251)
+. +++. .|.|+|++|| .++.+...+..|.++..|+.+
T Consensus 295 ~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 295 QA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp HH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred HH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 53 3342 3899999999 567777888999999999753
No 77
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.95 E-value=6e-33 Score=235.33 Aligned_cols=177 Identities=12% Similarity=0.004 Sum_probs=119.9
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC--hHHhhcceEEEccCCCCCCCCCH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD--MTTIRRSLGVCPQYNALFDKLTV 91 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~i~~v~q~~~l~~~ltv 91 (251)
..-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++... ....++.++|+||++.+|+.++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 45799999999999999999999999999999999998 6 99999 8766321 11235689999999877665431
Q ss_pred -HHHHH---HHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHH-----HHHHccCCCEEEEeCCCCC
Q psy7367 92 -EEHMW---FYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSV-----AMAFIGGSRTVILDEPTSG 162 (251)
Q Consensus 92 -~e~l~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~i-----a~al~~~p~llllDEPt~g 162 (251)
.+++. +....++.+. ..++++++...+. ..+ .+|||||+||++| |++|+.+|++++|||||++
T Consensus 86 ~~~~l~~~~~~~~~~g~~~----~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~ 157 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLK----SEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLT 157 (218)
T ss_dssp TTCEEEEEEETTEEEEEEH----HHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHH
T ss_pred ccchhhhhhcccccCCCcH----HHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHh
Confidence 12221 1111222222 2355666654432 222 5799999999999 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhh--------CCCeEEEEeCCHHHHHhhcCEEE
Q psy7367 163 VDPYSRRSIWELLIKYK--------KGRTVILTTHYMDEADLLGDRIA 202 (251)
Q Consensus 163 LD~~~~~~l~~~l~~l~--------~g~tiii~tHd~~~~~~~~d~i~ 202 (251)
+|..+...+.+.+.+.. .....|+++||++++...+++++
T Consensus 158 ~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 158 RNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 99988888888776552 34667778888877777666554
No 78
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.95 E-value=1.1e-30 Score=228.51 Aligned_cols=148 Identities=15% Similarity=0.131 Sum_probs=100.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHH
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDL 108 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 108 (251)
.++|+||||||||||+|+|+|+.+|++|+|.++|+++... ..++.++|++|++.+++.+||.||+.|+....+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~--~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~-- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT--VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC-- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC--CSCCEEEESCC----CCEEEEECCCC--CCSBCTTC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc--eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH--
Confidence 4899999999999999999999999999999999887432 235789999999999999999999988754432111
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEe
Q psy7367 109 AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTT 188 (251)
Q Consensus 109 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~t 188 (251)
.+.+.+++. ....+..+.+||||||||+++|||++. ++++|||+++||+.. .++++.+++..+||++.
T Consensus 80 -~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~~~vI~Vi 147 (270)
T 3sop_A 80 -WEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKVVNIIPVI 147 (270)
T ss_dssp -SHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTTSEEEEEE
T ss_pred -HHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhcCcEEEEE
Confidence 122333333 345566788999999999999999886 999999999999987 44555554338888888
Q ss_pred CCHH
Q psy7367 189 HYMD 192 (251)
Q Consensus 189 Hd~~ 192 (251)
|..+
T Consensus 148 ~K~D 151 (270)
T 3sop_A 148 AKAD 151 (270)
T ss_dssp TTGG
T ss_pred eccc
Confidence 8764
No 79
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.95 E-value=3.8e-32 Score=242.41 Aligned_cols=157 Identities=11% Similarity=0.066 Sum_probs=121.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcC
Q psy7367 24 FYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ 103 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~ 103 (251)
+++|+++||+||||||||||+++|+|+++|+.|. +++++++|++.+++. |+.||+.+.. .++
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~----------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g 148 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH----------------PRVDLVTTDGFLYPN-AELQRRNLMH-RKG 148 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC----------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC----------------CeEEEEecCccCCcc-cHHHHHHHHH-hcC
Confidence 8999999999999999999999999999997553 458999999998887 9999986532 123
Q ss_pred CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhC--C
Q psy7367 104 VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--G 181 (251)
Q Consensus 104 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--g 181 (251)
.+.....+.+.++++.++ ....+.++.+||+||+||+++|+|++.+|++||||||++.+|+.. ..+.+ +
T Consensus 149 ~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D 219 (312)
T 3aez_A 149 FPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFD 219 (312)
T ss_dssp SGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCS
T ss_pred CChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcC
Confidence 333333456778888888 555567788999999999999999999999999999999998621 12221 3
Q ss_pred CeEEEEeCCHHHH-HhhcCEEEEeeCCE
Q psy7367 182 RTVILTTHYMDEA-DLLGDRIAIIAAGK 208 (251)
Q Consensus 182 ~tiii~tHd~~~~-~~~~d~i~~l~~G~ 208 (251)
. +|+++|+.+.. .++++|.+.+.++.
T Consensus 220 ~-~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 220 F-SLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp E-EEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred c-EEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 4 46667777553 44566666565543
No 80
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.94 E-value=5.7e-31 Score=249.77 Aligned_cols=176 Identities=17% Similarity=0.211 Sum_probs=130.6
Q ss_pred eEEEEeCCCcceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHH--HhCCCCCCeeEEEEcceeCCCChHHhhcceEEEcc
Q psy7367 5 NLSKRFPNGKLAVNGLNV-NFYEDQITSFLGHNGAGKTTTISM--LMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQ 81 (251)
Q Consensus 5 ~l~~~y~~~~~il~~isl-~i~~Ge~~~liG~NGaGKSTLlk~--l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q 81 (251)
++.+ |..+.++|+++|| +|++|++++|+||||||||||+++ ++|+.+|++|.|+++|++........++.+||+||
T Consensus 17 ~~~~-~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q 95 (525)
T 1tf7_A 17 AIAK-MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLA 95 (525)
T ss_dssp SCCE-ECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHH
T ss_pred cccc-ccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChH
Confidence 4443 4345789999999 999999999999999999999999 78999999999999998743222344578999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy7367 82 YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS 161 (251)
Q Consensus 82 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~ 161 (251)
++....+ +.+ ..... .. ...++++.+++.+..++.+.+||+| +|+++++||||+
T Consensus 96 ~~~~~~~------l~~-~~~~~-~~-----~~~~~l~~~~l~~~~~~~~~~LS~g-------------~~~~lilDe~t~ 149 (525)
T 1tf7_A 96 KLVDEGK------LFI-LDASP-DP-----EGQEVVGGFDLSALIERINYAIQKY-------------RARRVSIDSVTS 149 (525)
T ss_dssp HHHHTTS------EEE-EECCC-CS-----SCCSCCSSHHHHHHHHHHHHHHHHH-------------TCSEEEEECSTT
T ss_pred HhhccCc------EEE-EecCc-cc-----chhhhhcccCHHHHHHHHHHHHHHc-------------CCCEEEECCHHH
Confidence 8653211 100 00000 00 0112333444444555556666665 588999999998
Q ss_pred -----CCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHH---------HhhcCEEEEeeCC
Q psy7367 162 -----GVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEA---------DLLGDRIAIIAAG 207 (251)
Q Consensus 162 -----gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~---------~~~~d~i~~l~~G 207 (251)
+||+..++.+++++++++ .|+|||++||+++++ ..+||++++|++|
T Consensus 150 ~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 150 VFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 469999999999999986 499999999999984 5669999999983
No 81
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.94 E-value=1.7e-29 Score=228.31 Aligned_cols=191 Identities=19% Similarity=0.207 Sum_probs=142.5
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC--------ChHHh
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT--------DMTTI 72 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--------~~~~~ 72 (251)
++++++++.|+.+..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|++... .....
T Consensus 46 i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~ 124 (347)
T 2obl_A 46 LLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTL 124 (347)
T ss_dssp TTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHH
T ss_pred eeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhh
Confidence 35678999996457899999 9999999999999999999999999999999999999999875211 11123
Q ss_pred hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHHHHccCC
Q psy7367 73 RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMAFIGGS 151 (251)
Q Consensus 73 ~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~al~~~p 151 (251)
++.+.+++|... +..+.+...... ..+.+.+...+-.- ..-..+..||+|| ||+++| +.+|
T Consensus 125 ~~~v~~~~~~~~-----~~~~r~~~~~~~---------~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p 186 (347)
T 2obl_A 125 SKCVLVVTTSDR-----PALERMKAAFTA---------TTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEP 186 (347)
T ss_dssp TTEEEEEECTTS-----CHHHHHHHHHHH---------HHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCC
T ss_pred hceEEEEECCCC-----CHHHHHHHHHHH---------HHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCC
Confidence 456788887532 233333211100 00111111111100 0114688999999 899999 6888
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhhh--C-CC-----eEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 152 RTVILDEPTSGVDPYSRRSIWELLIKYK--K-GR-----TVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 152 ~llllDEPt~gLD~~~~~~l~~~l~~l~--~-g~-----tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
++ |+||||..+..+.+++.++. + |. ||+++|||++ +.+||++++|.+|+++.++++.++
T Consensus 187 ~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 187 DV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred Cc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHHc
Confidence 87 99999999999999999984 4 77 9999999999 678999999999999999877644
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.94 E-value=6e-29 Score=223.35 Aligned_cols=132 Identities=16% Similarity=0.173 Sum_probs=111.6
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHH
Q psy7367 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHM 95 (251)
Q Consensus 16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l 95 (251)
+++++||++++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ....++.++++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~-~~~~~~~i~~~~g-------------- 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-FKHHKNYTQLFFG-------------- 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC-CSSCSSEEEEECB--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc-cccchhEEEEEeC--------------
Confidence 7899999999999999999999999999999999999999999999865211 1113445666541
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy7367 96 WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175 (251)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l 175 (251)
|||+||++||+||..+|+++|+||||+ ..+++.|
T Consensus 225 ---------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l 258 (330)
T 2pt7_A 225 ---------------------------------------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFY 258 (330)
T ss_dssp ---------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHH
T ss_pred ---------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHH
Confidence 899999999999999999999999998 2356777
Q ss_pred HhhhCC-CeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367 176 IKYKKG-RTVILTTHYMDEADLLGDRIAIIAAGKL 209 (251)
Q Consensus 176 ~~l~~g-~tiii~tHd~~~~~~~~d~i~~l~~G~i 209 (251)
+.+..| .|+|++||+++ +...|||+++|.+|..
T Consensus 259 ~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 259 NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 777665 58999999998 6778999999998864
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.94 E-value=1.4e-26 Score=209.95 Aligned_cols=86 Identities=19% Similarity=0.226 Sum_probs=77.8
Q ss_pred CCCCC-cCChhHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHh
Q psy7367 127 TSLAN-TLSGGMQRKLSVAMAFI---------GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADL 196 (251)
Q Consensus 127 ~~~~~-~LSgG~kqrv~ia~al~---------~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~ 196 (251)
++++. .||+|||||++||++|+ .+|++|||||||++||+..+..+++.+.++. .|+|++||. +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th~-~~--- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTEL-AP--- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESSC-CT---
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEec-cc---
Confidence 45677 89999999999999999 8999999999999999999999999998875 799999994 44
Q ss_pred hcCEEEEeeCCEEEeecCHHHH
Q psy7367 197 LGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 197 ~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
.||++++|++|+++..|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999987643
No 84
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.94 E-value=5.8e-28 Score=212.68 Aligned_cols=183 Identities=13% Similarity=0.061 Sum_probs=128.1
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG-TAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 92 (251)
..+|+++++.+++|++++|+||||||||||+++|+|...|++| .|.+.+.+.. ...+++++.++++...+ ++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~--~~~~~~r~~~~~~~~~~----~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES--VEETAEDLIGLHNRVRL----RQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC--HHHHHHHHHHHHTTCCG----GGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC--HHHHHHHHHHHHcCCCh----hhc
Confidence 4689999999999999999999999999999999999999888 7866554432 23344445455544322 233
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhH-HHHHHHHHHHccCCCEEEEeCCCC---C---CCH
Q psy7367 93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGM-QRKLSVAMAFIGGSRTVILDEPTS---G---VDP 165 (251)
Q Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~-kqrv~ia~al~~~p~llllDEPt~---g---LD~ 165 (251)
+++.... + ...+..+.+.++++..++ .....+..+|.++ +||+. |+++..+|+++|+||||+ + +|.
T Consensus 96 ~~l~~~~-~---~~~~~~~~~~~~l~~~~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~ 168 (296)
T 1cr0_A 96 DSLKREI-I---ENGKFDQWFDELFGNDTF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDE 168 (296)
T ss_dssp HHHHHHH-H---HHTHHHHHHHHHHSSSCE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------
T ss_pred cccccCC-C---CHHHHHHHHHHHhccCCE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCH
Confidence 4443321 1 122223344445443333 1233456789998 67776 999999999999999999 5 555
Q ss_pred -HHHHHHHHHHHhhh-C-CCeEEEEeCCH--H--------------------HHHhhcCEEEEeeCCEE
Q psy7367 166 -YSRRSIWELLIKYK-K-GRTVILTTHYM--D--------------------EADLLGDRIAIIAAGKL 209 (251)
Q Consensus 166 -~~~~~l~~~l~~l~-~-g~tiii~tHd~--~--------------------~~~~~~d~i~~l~~G~i 209 (251)
.....+++.|+++. + |+|||++||+. + .++.+||+|++|++|+.
T Consensus 169 ~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 169 RKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67788999998884 4 99999999995 5 78889999999999875
No 85
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.94 E-value=3.9e-26 Score=205.43 Aligned_cols=79 Identities=29% Similarity=0.412 Sum_probs=71.3
Q ss_pred cCCCCCcCChhHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhc
Q psy7367 126 RTSLANTLSGGMQR------KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLG 198 (251)
Q Consensus 126 ~~~~~~~LSgG~kq------rv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~ 198 (251)
.++++.+||||||| |+++|+||+.+|++|||||||++||+..+..++++|.++. +|.|||++|||.+ +..+|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~ 320 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 320 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhC
Confidence 46788999999999 6788888899999999999999999999999999999975 5889999999965 57789
Q ss_pred CEEEEee
Q psy7367 199 DRIAIIA 205 (251)
Q Consensus 199 d~i~~l~ 205 (251)
|++++|+
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999986
No 86
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.94 E-value=2.7e-28 Score=246.07 Aligned_cols=169 Identities=17% Similarity=0.262 Sum_probs=123.9
Q ss_pred CEEEe-----EEEEeCCCcceeeeeeEEEeC-------CcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC
Q psy7367 1 MAIQN-----LSKRFPNGKLAVNGLNVNFYE-------DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD 68 (251)
Q Consensus 1 l~i~~-----l~~~y~~~~~il~~isl~i~~-------Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~ 68 (251)
|+++| |++.|.++..+++|++|++++ |++++|+||||||||||||++ |++.+
T Consensus 751 l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------- 814 (1022)
T 2o8b_B 751 LELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------- 814 (1022)
T ss_dssp EEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH---------------
T ss_pred EEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH---------------
Confidence 46788 999994346899999999987 999999999999999999999 98763
Q ss_pred hHHhhcceE-EEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH
Q psy7367 69 MTTIRRSLG-VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 69 ~~~~~~~i~-~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
..++| ||||++. .+|+.|++. .++|+.+...+..+.+|+++++ +++|+++
T Consensus 815 ----~aqiG~~Vpq~~~---~l~v~d~I~---------------------~rig~~d~~~~~~stf~~em~~-~a~al~l 865 (1022)
T 2o8b_B 815 ----MAQMGCYVPAEVC---RLTPIDRVF---------------------TRLGASDRIMSGESTFFVELSE-TASILMH 865 (1022)
T ss_dssp ----HHTTTCCEESSEE---EECCCSBEE---------------------EECC---------CHHHHHHHH-HHHHHHH
T ss_pred ----HhheeEEeccCcC---CCCHHHHHH---------------------HHcCCHHHHhhchhhhHHHHHH-HHHHHHh
Confidence 13456 9999863 456655541 1223333344456788888876 9999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHH-HHHHHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEE--eecCH
Q psy7367 148 IGGSRTVILDEPTSGVDPYSR-RSIWELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQ--CCGSS 215 (251)
Q Consensus 148 ~~~p~llllDEPt~gLD~~~~-~~l~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~--~~g~~ 215 (251)
+.+|+++|||||++|+|+... ..+++++..+. + |+++|++||+++++..+||++.++ +|++. ..|++
T Consensus 866 a~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 866 ATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp CCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred CCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 999999999999999999985 55788888884 5 899999999999999999999887 58887 44544
No 87
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.93 E-value=4.6e-28 Score=208.22 Aligned_cols=167 Identities=12% Similarity=0.098 Sum_probs=111.9
Q ss_pred CcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92 (251)
Q Consensus 13 ~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 92 (251)
++++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|+. +++.+|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~---------~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE---------QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC---------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc---------ccCCceEEEeCCc-CccccCHh
Confidence 467999999999999999999999999999999999976 444433 2467899999995 77789999
Q ss_pred HHHHHHHHhcCCC--hHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q psy7367 93 EHMWFYSQLKQVP--KDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170 (251)
Q Consensus 93 e~l~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~ 170 (251)
+++.+........ .....+.+.+.++.+ .+..+.++..||+||+||+++ ++++.+|+++|+|||....|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~---- 149 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE---- 149 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH----
Confidence 9997755433221 111123344555543 344567889999999999988 6889999999999999888864
Q ss_pred HHHHHHhhhCCCeEEEEeCCHHHH-HhhcCEEEEeeCCE
Q psy7367 171 IWELLIKYKKGRTVILTTHYMDEA-DLLGDRIAIIAAGK 208 (251)
Q Consensus 171 l~~~l~~l~~g~tiii~tHd~~~~-~~~~d~i~~l~~G~ 208 (251)
+.++ .+.+|+++||+...+ ..+++++ ++|+
T Consensus 150 ----l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 150 ----IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp ----HHTT-CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred ----HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 2222 378999999974444 4555544 6664
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.93 E-value=2.6e-27 Score=224.66 Aligned_cols=154 Identities=12% Similarity=0.035 Sum_probs=123.3
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHH
Q psy7367 21 NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ 100 (251)
Q Consensus 21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~ 100 (251)
+..|++|++++|+||||||||||+++++|+.+|+ |+ +.+.|.+|++. .++.++. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~----------------~vi~~~~ee~~----~~l~~~~----~ 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE----------------RAILFAYEESR----AQLLRNA----Y 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC----------------CEEEEESSSCH----HHHHHHH----H
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC----------------CEEEEEEeCCH----HHHHHHH----H
Confidence 4589999999999999999999999999998874 43 11345555531 0222222 1
Q ss_pred hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----HHHHHHHHH
Q psy7367 101 LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY-----SRRSIWELL 175 (251)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~-----~~~~l~~~l 175 (251)
..+... ++ +..+|+....+.++.+||+||+||+++|+++..+|+++|+| ||++||+. .++.+.+++
T Consensus 330 ~~g~~~-------~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll 400 (525)
T 1tf7_A 330 SWGMDF-------EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVT 400 (525)
T ss_dssp TTSCCH-------HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHH
T ss_pred HcCCCH-------HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHH
Confidence 112221 11 23467777778889999999999999999999999999999 99999999 999999999
Q ss_pred Hhhh-CCCeEEEEeCCH----------HHHHhhcCEEEEeeCCE
Q psy7367 176 IKYK-KGRTVILTTHYM----------DEADLLGDRIAIIAAGK 208 (251)
Q Consensus 176 ~~l~-~g~tiii~tHd~----------~~~~~~~d~i~~l~~G~ 208 (251)
+.++ .|.|||++||+. ..+..+||++++|++|+
T Consensus 401 ~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 401 GYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9985 599999999999 78888999999999887
No 89
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.93 E-value=3.2e-26 Score=216.77 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=73.3
Q ss_pred CCCCcC-ChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367 128 SLANTL-SGGMQRKLSVAMAFIGGS--RTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAII 204 (251)
Q Consensus 128 ~~~~~L-SgG~kqrv~ia~al~~~p--~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l 204 (251)
+++.+| ||||||||+||+||+.+| ++|||||||+|||+.++..+.++|+++++|.|||+|||+++.+. +||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 457788 999999999999999999 99999999999999999999999999866899999999999876 69999999
Q ss_pred eCC
Q psy7367 205 AAG 207 (251)
Q Consensus 205 ~~G 207 (251)
+++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
No 90
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.93 E-value=2.9e-28 Score=207.80 Aligned_cols=171 Identities=16% Similarity=0.092 Sum_probs=113.0
Q ss_pred eeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHh--CCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367 16 AVNGLNV-NFYEDQITSFLGHNGAGKTTTISMLM--GMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92 (251)
Q Consensus 16 il~~isl-~i~~Ge~~~liG~NGaGKSTLlk~l~--Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 92 (251)
.|+.+-- .|++|++++|+||||||||||+++|+ |+.++.+|.+++.+...........+.++|.+|+...++.+++.
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 97 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIV 97 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEE
Confidence 4555411 79999999999999999999999999 77567778888877654322223345688888876555555555
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC-----HHH
Q psy7367 93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD-----PYS 167 (251)
Q Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD-----~~~ 167 (251)
++........ . ... .......+..+......+..-..+|+++++||||++|| +..
T Consensus 98 ~~~~~~~~~~---~----~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~ 157 (251)
T 2ehv_A 98 DGVSSVVGLP---S----EEK-------------FVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKI 157 (251)
T ss_dssp C---------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGH
T ss_pred Eccccccccc---c----ccc-------------eeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHH
Confidence 4433211100 0 000 00111233444444444444568999999999999998 777
Q ss_pred HHHHHHHHHhhh-CCCeEEEEeCCHHHH---------Hhhc-CEEEEeeC
Q psy7367 168 RRSIWELLIKYK-KGRTVILTTHYMDEA---------DLLG-DRIAIIAA 206 (251)
Q Consensus 168 ~~~l~~~l~~l~-~g~tiii~tHd~~~~---------~~~~-d~i~~l~~ 206 (251)
++.+.++++.++ .|+|||++||+++++ +.+| |++++|++
T Consensus 158 ~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 158 REVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 777999999886 499999999999998 6888 99999963
No 91
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.93 E-value=2.9e-26 Score=228.46 Aligned_cols=157 Identities=26% Similarity=0.321 Sum_probs=125.7
Q ss_pred HHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC----------hHHHHH
Q psy7367 42 TTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP----------KDLAQL 111 (251)
Q Consensus 42 TLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~----------~~~~~~ 111 (251)
|...|..+.++|.+++|+++|+++.. +..+++.+++.|...+. .. ..+. .
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~------------------~~~~~v~~~l~~~~~~~-l~~~~~~~~~~~~~~~-~ 442 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHE------------------FTELSISEELEFLKNLN-LTEREREIVGELLKEI-E 442 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHH------------------HHHSBHHHHHHHHHSCC-CCTTTTTTHHHHHHHH-H
T ss_pred cchhcccccCChHhcCcEECCccHHH------------------hhhCCHHHHHHHHHhcc-CcHHHHHHHHhhHHHH-H
Confidence 45567777889999999999988631 22345555555432211 00 0111 2
Q ss_pred HHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEE
Q psy7367 112 EISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGSR--TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILT 187 (251)
Q Consensus 112 ~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~~~p~--llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~ 187 (251)
+..++|..+||... .++++.+|||||||||+|||||+++|+ +|||||||+|||+..++.++++|++++ +|.|||+|
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 34567888999865 689999999999999999999999887 999999999999999999999999996 49999999
Q ss_pred eCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHH
Q psy7367 188 THYMDEADLLGDRIAII------AAGKLQCCGSSVFLK 219 (251)
Q Consensus 188 tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~ 219 (251)
|||++.+.. ||+|++| ++|++++.|+++++.
T Consensus 523 tHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 523 EHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp CCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred eCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 999999875 9999999 999999999998764
No 92
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.91 E-value=5.2e-24 Score=211.75 Aligned_cols=129 Identities=21% Similarity=0.324 Sum_probs=111.6
Q ss_pred CCCCHHHHHHHHHHhcCCCh----------HHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHccCC--CE
Q psy7367 87 DKLTVEEHMWFYSQLKQVPK----------DLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGS--RT 153 (251)
Q Consensus 87 ~~ltv~e~l~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~~~p--~l 153 (251)
..+||.|++.|+..+ .++. ++..+++ ++|..+||... +++++.+|||||||||+||++|+.+| ++
T Consensus 450 ~~ltV~e~~~f~e~l-~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~l 527 (972)
T 2r6f_A 450 TAMSVTEALAFFDGL-ELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL 527 (972)
T ss_dssp HTSBHHHHHHHHHHC-CCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred hhCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCE
Confidence 357999999996544 3444 2344555 46899999865 79999999999999999999999985 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHH
Q psy7367 154 VILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFL 218 (251)
Q Consensus 154 lllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~ 218 (251)
|||||||++|||...+.++++|++++ .|.|||+|+||++++. .||||++| ++|++++.|+++++
T Consensus 528 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 528 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEV 598 (972)
T ss_dssp EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence 99999999999999999999999997 4999999999999886 69999999 79999999998755
No 93
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.91 E-value=4e-27 Score=208.91 Aligned_cols=163 Identities=16% Similarity=0.136 Sum_probs=89.2
Q ss_pred EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC-CCCCeeEEEEcceeCCCChHHhhcceEEEccC
Q psy7367 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM-LPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQY 82 (251)
Q Consensus 4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~ 82 (251)
.||+++|+ ++.++++++|+| +|+||||||||||+++|+|. ..|++| +.++|.++.... . .+.+++++|.
T Consensus 2 ~~l~~~~~-~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~-~-~~~~~~~~q~ 71 (301)
T 2qnr_A 2 SNLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTV-Q-IEASTVEIEE 71 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC-
T ss_pred CCCcceEC-CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcc-e-EeeEEEEecC
Confidence 58999996 478999999998 99999999999999999998 889999 888887764321 1 3568999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy7367 83 NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162 (251)
Q Consensus 83 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~g 162 (251)
..++..+|++|+..++..... .+ +...+.+. +.+..++++.++|||||||+.+|||++ ++++||||++
T Consensus 72 ~~~~~~ltv~Dt~g~~~~~~~--~e----~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 72 RGVKLRLTVVDTPGYGDAINC--RD----CFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp --CCEEEEEEEEC-----------------CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred CCcccCcchhhhhhhhhhcCc--HH----HHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 888888899998877543211 00 11111111 123345678899999999999999986 9999999984
Q ss_pred -CCHHHHHHHHHHHHhhh-C-CCeEEEEeCCHH
Q psy7367 163 -VDPYSRRSIWELLIKYK-K-GRTVILTTHYMD 192 (251)
Q Consensus 163 -LD~~~~~~l~~~l~~l~-~-g~tiii~tHd~~ 192 (251)
||+... ++++++. + +.++|+++||+.
T Consensus 140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 5555654 3 789999999974
No 94
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.90 E-value=1.3e-25 Score=195.38 Aligned_cols=132 Identities=18% Similarity=0.138 Sum_probs=101.4
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-SGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE 93 (251)
Q Consensus 15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 93 (251)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~---~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF---KHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC---CCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec---CCcceeeeHH-----------
Confidence 4899999 9999999999999999999999999999998 999999987753210 1112233221
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7367 94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173 (251)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~ 173 (251)
.+++.. ..| |++||+||..+|+++++|||| |+.+...+++
T Consensus 79 -------------------------~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~ 118 (261)
T 2eyu_A 79 -------------------------EVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETVETALR 118 (261)
T ss_dssp -------------------------EBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH
T ss_pred -------------------------HhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH
Confidence 233321 122 899999999999999999999 9988665443
Q ss_pred HHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA 206 (251)
Q Consensus 174 ~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~ 206 (251)
....|.+|+++||+.+ +...|||+++|..
T Consensus 119 ---~~~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 119 ---AAETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp ---HHHTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred ---HHccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 3446999999999987 5678898877653
No 95
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.90 E-value=1.4e-24 Score=214.69 Aligned_cols=178 Identities=17% Similarity=0.230 Sum_probs=130.7
Q ss_pred CCCCcHHHHHHHHhCC---------CCCCeeEEEEcceeCCC----ChHHhhcceEEEccCCCCCC----CCCHHHHHHH
Q psy7367 35 HNGAGKTTTISMLMGM---------LPVSSGTAKIYNHDIRT----DMTTIRRSLGVCPQYNALFD----KLTVEEHMWF 97 (251)
Q Consensus 35 ~NGaGKSTLlk~l~Gl---------~~p~~G~i~~~g~~~~~----~~~~~~~~i~~v~q~~~l~~----~ltv~e~l~~ 97 (251)
.+..||+|+.+.+... +.|.+|+|.++|+++.. ...+...-+.-+||++.... .++. ++...
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 348 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRP-EQAIA 348 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcch-hhHHH
Confidence 3556899999988874 34567899999988742 11122211222233221100 1111 11111
Q ss_pred HHHhcCCChHHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHH
Q psy7367 98 YSQLKQVPKDLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGS--RTVILDEPTSGVDPYSRRSIWEL 174 (251)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~~~p--~llllDEPt~gLD~~~~~~l~~~ 174 (251)
...+ ..+..++++ .+..+||... +++++.+|||||||||+||++|+.+| .+|||||||++||+..++.++++
T Consensus 349 ~~~i----~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~ 423 (842)
T 2vf7_A 349 LQRM----AADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSA 423 (842)
T ss_dssp HHHH----HHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHH
T ss_pred HHHH----HHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHH
Confidence 1111 234556665 6889999865 79999999999999999999999999 59999999999999999999999
Q ss_pred HHhhhC-CCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHH
Q psy7367 175 LIKYKK-GRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLK 219 (251)
Q Consensus 175 l~~l~~-g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~ 219 (251)
|+++++ |.|||+||||++.+. .||+|++| ++|++++.|+++++.
T Consensus 424 l~~L~~~G~TVIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 424 LENLKRGGNSLFVVEHDLDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp HHHHHTTTCEEEEECCCHHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HHHHHHcCCEEEEEcCCHHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 999964 999999999999765 79999999 799999999987653
No 96
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.90 E-value=2.3e-24 Score=215.40 Aligned_cols=148 Identities=17% Similarity=0.254 Sum_probs=108.6
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHH--------hCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCC
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISML--------MGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNAL 85 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l--------~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l 85 (251)
+.+++|++|++++|++++|+||||||||||||++ +|...|.++.. ++++.
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-----------------~~~~d----- 706 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-----------------VSIVD----- 706 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-----------------EECCS-----
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-----------------chHHH-----
Confidence 4688899999999999999999999999999999 66555543321 11000
Q ss_pred CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH--ccCCCEEEEeCCCCCC
Q psy7367 86 FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF--IGGSRTVILDEPTSGV 163 (251)
Q Consensus 86 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al--~~~p~llllDEPt~gL 163 (251)
.++.++|+.+. ....+|++++++..+|+++ +.+|+++||||||+|+
T Consensus 707 -----------------------------~i~~~ig~~d~---l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~Gl 754 (934)
T 3thx_A 707 -----------------------------CILARVGAGDS---QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGT 754 (934)
T ss_dssp -----------------------------EEEEECC------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSS
T ss_pred -----------------------------HHHHhcCchhh---HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCC
Confidence 01112222221 2345778888777888877 9999999999999999
Q ss_pred CHHHHHHH-HHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367 164 DPYSRRSI-WELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 216 (251)
Q Consensus 164 D~~~~~~l-~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 216 (251)
|+.....+ +.++..+. + |+++|++||+.+.+ .+||++..+.+|++...++++
T Consensus 755 D~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~~~~~~ 809 (934)
T 3thx_A 755 STYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTALTTEE 809 (934)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEEEEETT
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEEEecCC
Confidence 99999888 66777774 3 89999999997655 689999999999998766543
No 97
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.90 E-value=5.2e-24 Score=212.36 Aligned_cols=132 Identities=24% Similarity=0.368 Sum_probs=112.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCh----------HHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHccC--CC
Q psy7367 86 FDKLTVEEHMWFYSQLKQVPK----------DLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGG--SR 152 (251)
Q Consensus 86 ~~~ltv~e~l~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~~~--p~ 152 (251)
+..+||.|++.|+..+ +++. ++..+++ +.|..+||... +++++.+|||||||||+||++|+.+ |+
T Consensus 466 ~~~ltV~e~l~f~enl-~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~ 543 (993)
T 2ygr_A 466 VCELSIADCADFLNAL-TLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGV 543 (993)
T ss_dssp SSHHHHHHHHHTTTTT-TSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSC
T ss_pred HhhCCHHHHHHHHHhc-CCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCc
Confidence 3457899999984333 3443 2344555 45889999865 7999999999999999999999998 59
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEEEe------eCCEEEeecCHHHHHh
Q psy7367 153 TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAII------AAGKLQCCGSSVFLKN 220 (251)
Q Consensus 153 llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~~l------~~G~i~~~g~~~~~~~ 220 (251)
+|||||||++||+...+.++++|++++ .|.|||+|+||++++. .||+|++| ++|++++.|+++++..
T Consensus 544 llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 544 LYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred EEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 999999999999999999999999996 5999999999999876 69999999 7999999999876643
No 98
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.90 E-value=2.3e-23 Score=192.75 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=69.2
Q ss_pred CCCCcCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhcCEEE
Q psy7367 128 SLANTLSGGMQRKLSVAMAFI----GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIA 202 (251)
Q Consensus 128 ~~~~~LSgG~kqrv~ia~al~----~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~d~i~ 202 (251)
+++..||||||||++||++|+ .+|+++||||||++||+..+..+.++|+++. ++.++|++||+...+ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 345679999999999999999 5899999999999999999999999999985 489999999997654 5799999
Q ss_pred Eee
Q psy7367 203 IIA 205 (251)
Q Consensus 203 ~l~ 205 (251)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 99
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.90 E-value=1.6e-25 Score=188.53 Aligned_cols=147 Identities=16% Similarity=0.099 Sum_probs=99.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-------CeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHH
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPV-------SSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHM 95 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-------~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l 95 (251)
.|++|++++|+||||||||||+++|+|+..| ..|.+++++++... .+++++++|...+++. |+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-----~~~i~~~~~~~~~~~~-~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----PERIREIAQNRGLDPD-EVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-----HHHHHHHHHHTTSCHH-HHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-----HHHHHHHHHHcCCCHH-HHhhcE
Confidence 7999999999999999999999999996554 44577887765311 1245666777666554 666665
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhH-HHHHHHHHHH-------ccCCCEEEEeCCCCCCCHH-
Q psy7367 96 WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGM-QRKLSVAMAF-------IGGSRTVILDEPTSGVDPY- 166 (251)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~-kqrv~ia~al-------~~~p~llllDEPt~gLD~~- 166 (251)
.+... ++.++ ++.+..++++ ..+|+++++||||+++|+.
T Consensus 95 ~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~ 142 (231)
T 4a74_A 95 YVARA--------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEY 142 (231)
T ss_dssp EEEEC--------------------------------CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHS
T ss_pred EEEec--------------------------------CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcccc
Confidence 43211 11111 1222333333 3599999999999999984
Q ss_pred ------H-----HHHHHHHHHhh-hC-CCeEEEEeCCH----HHHHhhcCEEEEeeCC
Q psy7367 167 ------S-----RRSIWELLIKY-KK-GRTVILTTHYM----DEADLLGDRIAIIAAG 207 (251)
Q Consensus 167 ------~-----~~~l~~~l~~l-~~-g~tiii~tHd~----~~~~~~~d~i~~l~~G 207 (251)
. ...+++.|.++ ++ |+|||++||++ ..+..+||++++|++|
T Consensus 143 ~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 143 IGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 2 23677777776 33 99999999954 4499999999999875
No 100
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.89 E-value=7.1e-25 Score=215.49 Aligned_cols=144 Identities=19% Similarity=0.234 Sum_probs=110.3
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-VSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 92 (251)
+.+++|+||+ |++++|+||||||||||||+|+|+.. |+.|.+. . ..+..+++++| +|+.+++.
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p----a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P----AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S----SSEEEECCCSE---EEEECCC-
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e----hhccceeeHHH---hhccCCHH
Confidence 5688999999 99999999999999999999999874 6777642 1 12346888876 56667887
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHHH
Q psy7367 93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF--IGGSRTVILDEP---TSGVDPYS 167 (251)
Q Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al--~~~p~llllDEP---t~gLD~~~ 167 (251)
||+.. .+|+||+|++.+|+++ +.+|+++||||| |++||+.+
T Consensus 630 d~l~~----------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~ 675 (765)
T 1ewq_A 630 DDLAG----------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVA 675 (765)
T ss_dssp ---------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHH
T ss_pred HHHHh----------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHH
Confidence 77643 2588999999999999 999999999999 99999988
Q ss_pred H-HHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367 168 R-RSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCC 212 (251)
Q Consensus 168 ~-~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~ 212 (251)
. ..+++.|.+ .|.++|++||+.+.+. +| .-.+.++.+...
T Consensus 676 ~~~~i~~~L~~--~g~~vl~~TH~~~l~~-~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 676 IATAVAEALHE--RRAYTLFATHYFELTA-LG--LPRLKNLHVAAR 716 (765)
T ss_dssp HHHHHHHHHHH--HTCEEEEECCCHHHHT-CC--CTTEEEEEEEEE
T ss_pred HHHHHHHHHHh--CCCEEEEEeCCHHHHH-hh--hhcceEEEEEEE
Confidence 6 468888776 5899999999988764 55 223445555444
No 101
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.89 E-value=4.7e-23 Score=164.81 Aligned_cols=83 Identities=31% Similarity=0.400 Sum_probs=75.0
Q ss_pred cCCCCCcCChhHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHHHHHhhc
Q psy7367 126 RTSLANTLSGGMQRKLSVA------MAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLG 198 (251)
Q Consensus 126 ~~~~~~~LSgG~kqrv~ia------~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~~~~~~~ 198 (251)
.++++.+||||||||++|| |||+.+|+++||||||+|||+.++..+.+.+.++. +|.|||++|||+ ++..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence 4678999999999999876 89999999999999999999999999999999985 589999999999 567899
Q ss_pred CEEEEe--eCCEE
Q psy7367 199 DRIAII--AAGKL 209 (251)
Q Consensus 199 d~i~~l--~~G~i 209 (251)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
No 102
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.89 E-value=3.8e-26 Score=220.14 Aligned_cols=185 Identities=15% Similarity=0.200 Sum_probs=121.4
Q ss_pred EEEeEEEEeCCC-cceeeee----------eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEEcceeCCC--
Q psy7367 2 AIQNLSKRFPNG-KLAVNGL----------NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-SSGTAKIYNHDIRT-- 67 (251)
Q Consensus 2 ~i~~l~~~y~~~-~~il~~i----------sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~-- 67 (251)
+++|+++.|+.. +++|+.+ +++++. ++|+|||||||||||++|+|+..| ++|.|+++|.++..
T Consensus 12 ~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~ 88 (608)
T 3szr_A 12 AENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKK 88 (608)
T ss_dssp --------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEE
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEec
Confidence 578899999531 2345444 366665 999999999999999999999988 79999999998621
Q ss_pred --ChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHH
Q psy7367 68 --DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM 145 (251)
Q Consensus 68 --~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~ 145 (251)
....+++.++|+||++.+++.+||.+|+.+.....+... -++. ++++.++.
T Consensus 89 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~-------------~~~s--------------~~~i~l~i 141 (608)
T 3szr_A 89 LVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG-------------MGIS--------------HELITLEI 141 (608)
T ss_dssp CSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS-------------SCCC--------------SCCEEEEE
T ss_pred CCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc-------------cccc--------------hHHHHHHh
Confidence 123567889999999999999999999987543211000 0111 12233334
Q ss_pred HHccCCCEEEEeCC------CCCCCHHHHHHHHHHHHhh-hC--CCeEEEEeCCHHH--------HHhh----cCEEEEe
Q psy7367 146 AFIGGSRTVILDEP------TSGVDPYSRRSIWELLIKY-KK--GRTVILTTHYMDE--------ADLL----GDRIAII 204 (251)
Q Consensus 146 al~~~p~llllDEP------t~gLD~~~~~~l~~~l~~l-~~--g~tiii~tHd~~~--------~~~~----~d~i~~l 204 (251)
+....|+++|+||| |+|||+..+..+.++++++ ++ +.+++++||+++. +..+ +..|+++
T Consensus 142 ~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~Vl 221 (608)
T 3szr_A 142 SSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGIL 221 (608)
T ss_dssp EESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEE
T ss_pred cCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEe
Confidence 44568999999999 9999999999999999996 43 7899999999763 2222 3568899
Q ss_pred eCCEEEeecCHH
Q psy7367 205 AAGKLQCCGSSV 216 (251)
Q Consensus 205 ~~G~i~~~g~~~ 216 (251)
.++.++..|+..
T Consensus 222 TK~Dlv~~g~~~ 233 (608)
T 3szr_A 222 TKPDLVDKGTED 233 (608)
T ss_dssp ECGGGSSSSSTT
T ss_pred cchhhcCcccHH
Confidence 888887777653
No 103
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.89 E-value=9.6e-27 Score=194.66 Aligned_cols=144 Identities=15% Similarity=0.058 Sum_probs=118.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCC--CCCCHHHHHHHHHHh
Q psy7367 24 FYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALF--DKLTVEEHMWFYSQL 101 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~--~~ltv~e~l~~~~~~ 101 (251)
.++|+++||+||||||||||+++|+|++.| .++|++|++.++ ..+|+.++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 578999999999999999999999998765 489999998776 5679988876532
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHH----HHHHHHHHHccCCCEEEEeCCCCC-------CCHHHHHH
Q psy7367 102 KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQ----RKLSVAMAFIGGSRTVILDEPTSG-------VDPYSRRS 170 (251)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~k----qrv~ia~al~~~p~llllDEPt~g-------LD~~~~~~ 170 (251)
+.+.....+++.++++.+++.+..++++.++|+||+ ||+++|++++.+|+++++||||++ ||+.....
T Consensus 60 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~ 138 (211)
T 3asz_A 60 -DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADER 138 (211)
T ss_dssp -TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHH
T ss_pred -CChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHH
Confidence 111222234577788888888777778999999974 788999999999999999999999 99999999
Q ss_pred HHHHHHhh-h-CCCeEEEEeCCH
Q psy7367 171 IWELLIKY-K-KGRTVILTTHYM 191 (251)
Q Consensus 171 l~~~l~~l-~-~g~tiii~tHd~ 191 (251)
+.+.+.+. + +|.|+++++|+.
T Consensus 139 ~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 139 FIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Confidence 99998875 3 589999999985
No 104
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.89 E-value=6.4e-24 Score=211.80 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=103.5
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE 93 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 93 (251)
+.+++|+||++++|++++|+||||||||||||+++++.... +.-.++|.....++.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-------------------q~g~~vpa~~~~i~~----- 715 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-------------------QIGSYVPAEEATIGI----- 715 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-------------------HHTCCBSSSEEEEEC-----
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-------------------hcCccccchhhhhhH-----
Confidence 56899999999999999999999999999999998642110 000122221100000
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-
Q psy7367 94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW- 172 (251)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~- 172 (251)
++.++..+++.+...+..+.+|+||+|++.|+++ +.+|+++||||||+|||+.....+.
T Consensus 716 -------------------~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~ 775 (918)
T 3thx_B 716 -------------------VDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAY 775 (918)
T ss_dssp -------------------CSEEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHH
T ss_pred -------------------HHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 0011223344444455678899999999999999 8999999999999999999999987
Q ss_pred HHHHhh-h-CCCeEEEEeCCHHHHHhhcCEEEE-eeCCEEEe
Q psy7367 173 ELLIKY-K-KGRTVILTTHYMDEADLLGDRIAI-IAAGKLQC 211 (251)
Q Consensus 173 ~~l~~l-~-~g~tiii~tHd~~~~~~~~d~i~~-l~~G~i~~ 211 (251)
.++..+ + .|+|||++||+++.+ .+||+.-- +.++.+.+
T Consensus 776 ~il~~L~~~~g~tvl~vTH~~el~-~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 776 ATLEYFIRDVKSLTLFVTHYPPVC-ELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHTTCCEEEEECSCGGGG-GHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHhcCCeEEEEeCcHHHH-HHHhhcccceEEEEEEE
Confidence 677776 4 499999999998776 46765421 34444433
No 105
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.88 E-value=8.8e-25 Score=194.16 Aligned_cols=150 Identities=19% Similarity=0.133 Sum_probs=109.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----HHh--hcceEEEccCCCCCCCCCHHHHHHHH
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----TTI--RRSLGVCPQYNALFDKLTVEEHMWFY 98 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~--~~~i~~v~q~~~l~~~ltv~e~l~~~ 98 (251)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... ..+ +..++|++|++.++|.+++++|+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999974311 122 35799999999988889999999865
Q ss_pred HHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367 99 SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178 (251)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l 178 (251)
... +.. ..+++..|+.+...+.+.+| ++||++||||++.+|+.++| .||+.+...+++.++++
T Consensus 181 ~~~-~~d--------~~llDt~G~~~~~~~~~~eL---s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~ 243 (304)
T 1rj9_A 181 KAR-GYD--------LLFVDTAGRLHTKHNLMEEL---KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKF 243 (304)
T ss_dssp HHH-TCS--------EEEECCCCCCTTCHHHHHHH---HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHH
T ss_pred HhC-CCC--------EEEecCCCCCCchHHHHHHH---HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHH
Confidence 321 110 01233344433333334444 48999999999999994444 44555455566777776
Q ss_pred h-C-CCeEEEEeCCHH
Q psy7367 179 K-K-GRTVILTTHYMD 192 (251)
Q Consensus 179 ~-~-g~tiii~tHd~~ 192 (251)
. . +.|+|++||+.+
T Consensus 244 ~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 244 HEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHCCSEEEEECTTS
T ss_pred HHHcCCcEEEEECCcc
Confidence 4 3 899999999853
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.88 E-value=3.2e-24 Score=180.31 Aligned_cols=170 Identities=14% Similarity=0.068 Sum_probs=119.4
Q ss_pred CcceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hHHhhcceEEEccCCCCCCCCC
Q psy7367 13 GKLAVNGLNV-NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTTIRRSLGVCPQYNALFDKLT 90 (251)
Q Consensus 13 ~~~il~~isl-~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~l~~~lt 90 (251)
+.+.|+++.. .+++|++++|+||||||||||++.|++...+++|.|.+.+.+.... .......+++.+|..... .+.
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 3568999998 8999999999999999999999999998888888888876554211 111112344444332110 110
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC--EEEEeCCCCCC--CHH
Q psy7367 91 VEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR--TVILDEPTSGV--DPY 166 (251)
Q Consensus 91 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~--llllDEPt~gL--D~~ 166 (251)
+ ...... .++ .... ....|.++.++...+.+...+|+ ++++||||+++ |+.
T Consensus 87 ~---------~~~~~~------------~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~ 141 (235)
T 2w0m_A 87 I---------IDALMK------------EKE-DQWS---LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPA 141 (235)
T ss_dssp E---------EECCC-----------------CTTB---CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGG
T ss_pred E---------Eecccc------------ccC-ceee---ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHH
Confidence 0 000000 001 1111 22349999998888888888999 99999999887 999
Q ss_pred HHHHHHHHHHhhh--CCCeEEEEeCCH--------HHHHhhcCEEEEeeCCE
Q psy7367 167 SRRSIWELLIKYK--KGRTVILTTHYM--------DEADLLGDRIAIIAAGK 208 (251)
Q Consensus 167 ~~~~l~~~l~~l~--~g~tiii~tHd~--------~~~~~~~d~i~~l~~G~ 208 (251)
.+..+++.|+++. .|.|||++||+. ..++.+||++++|+...
T Consensus 142 ~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 142 MARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9999999999873 499999999999 55899999999998653
No 107
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.86 E-value=5.5e-25 Score=182.81 Aligned_cols=158 Identities=17% Similarity=0.061 Sum_probs=108.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCh
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK 106 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 106 (251)
|++++|+||||||||||+++|+|+++ ++| |.++|.+... ...+++.+||++|+. .... +++ .++. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~-~~~~~~~ig~~~~~~--~g~~---~~l---~~~~-~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEE-VRQGGRRIGFDVVTL--SGTR---GPL---SRVG-LEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCE-EETTSSEEEEEEEET--TSCE---EEE---EECC-CCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecch-hHhhhceEEEEEEec--ccce---ehh---hccc-ccC
Confidence 78999999999999999999999999 999 9999988742 234578899999985 1111 111 1110 000
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhhhC
Q psy7367 107 DLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKL-SVAM---AFIGGSRTVILDE--PTSGVDPYSRRSIWELLIKYKK 180 (251)
Q Consensus 107 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv-~ia~---al~~~p~llllDE--Pt~gLD~~~~~~l~~~l~~l~~ 180 (251)
. .....+...++...+|+|||+++ ++++ |++.+|+++|+|| |+..+|+...+.+.+++..
T Consensus 69 ~-----------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~--- 134 (189)
T 2i3b_A 69 P-----------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST--- 134 (189)
T ss_dssp C-----------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---
T ss_pred C-----------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC---
Confidence 0 00011234556668999999988 4454 6899999999999 8999999876666666653
Q ss_pred CCeEE----EEeCCHHHHHhhcCEEEEeeCCEEEee
Q psy7367 181 GRTVI----LTTHYMDEADLLGDRIAIIAAGKLQCC 212 (251)
Q Consensus 181 g~tii----i~tHd~~~~~~~~d~i~~l~~G~i~~~ 212 (251)
..++| .+||+.+ ..++|+|..+.+|+++..
T Consensus 135 ~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 135 PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 33444 3449863 234455555678888754
No 108
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.86 E-value=2.3e-23 Score=205.78 Aligned_cols=153 Identities=18% Similarity=0.244 Sum_probs=108.4
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-SSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 92 (251)
+.+++|+||+ ++|++++|+||||||||||||+|+|+..+ ..| ..+.. .+..+++++| +|..+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa----~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA----QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----hcccceeHHH---HHhhCCHH
Confidence 5689999999 99999999999999999999999997432 122 11111 1234666655 45566666
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH-
Q psy7367 93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI- 171 (251)
Q Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l- 171 (251)
|++... .+.+|++|++ ++.+...+.+|+++|||||++|+|+.....+
T Consensus 661 d~l~~~-------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~ 708 (800)
T 1wb9_A 661 DDLASG-------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLA 708 (800)
T ss_dssp ----------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHH
T ss_pred HHHHhh-------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHH
Confidence 665321 1245666664 4445556999999999999999999887775
Q ss_pred HHHHHhhh-C-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeec
Q psy7367 172 WELLIKYK-K-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213 (251)
Q Consensus 172 ~~~l~~l~-~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g 213 (251)
+.++..+. + |.++|++||+.+.+ .+||++..+.+|++....
T Consensus 709 ~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 709 WACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEEEEE
T ss_pred HHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEEEEEE
Confidence 67888774 3 89999999999776 589998888888876553
No 109
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.86 E-value=6.9e-24 Score=191.75 Aligned_cols=164 Identities=18% Similarity=0.127 Sum_probs=109.5
Q ss_pred cceeeee-eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCe----eE-EEEcceeCCCChHHhhcceEEEccCCCC
Q psy7367 14 KLAVNGL-NVNFYEDQITSFLGHNGAGKTTTISMLMGML--PVSS----GT-AKIYNHDIRTDMTTIRRSLGVCPQYNAL 85 (251)
Q Consensus 14 ~~il~~i-sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~--~p~~----G~-i~~~g~~~~~~~~~~~~~i~~v~q~~~l 85 (251)
...|+.+ ++.|++|++++|+||||||||||++.+++.. +|++ |+ |++++++.. .++++++++|.+.+
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-----~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-----RPERIREIAQNRGL 191 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-----CHHHHHHHHHTTTC
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-----CHHHHHHHHHHcCC
Confidence 3456666 6899999999999999999999999999988 6776 68 889887642 13457788888776
Q ss_pred CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc-------cCCCEEEEeC
Q psy7367 86 FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI-------GGSRTVILDE 158 (251)
Q Consensus 86 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~-------~~p~llllDE 158 (251)
++. ++.+|+.+... .. |.+++|++.++++++ .+|+++|+||
T Consensus 192 ~~~-~v~~ni~~~~~---~~----------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs 239 (349)
T 1pzn_A 192 DPD-EVLKHIYVARA---FN----------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS 239 (349)
T ss_dssp CHH-HHGGGEEEEEC---CS----------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEET
T ss_pred CHH-HHhhCEEEEec---CC----------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEeC
Confidence 654 66666543211 00 344555666666655 7899999999
Q ss_pred CCCCCCHHH------------HHHHHHHHHhhh--CCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecC
Q psy7367 159 PTSGVDPYS------------RRSIWELLIKYK--KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214 (251)
Q Consensus 159 Pt~gLD~~~------------~~~l~~~l~~l~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~ 214 (251)
||+++|+.. ...++..|.++. .++|||+++|........++.......|+++..+.
T Consensus 240 ~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 240 LTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp SSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred chHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 999999862 355666666653 48999999999876654444455566676655443
No 110
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.86 E-value=8.4e-24 Score=195.21 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=101.4
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP 80 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 80 (251)
|.++||+++|+ ++.+++++||+| +|+||||||||||+++|+|+..|+.| .+|..+..........+++++
T Consensus 12 l~~~~l~~~y~-~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 12 VGFANLPNQVY-RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp ---CCCCCCTT-TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC-----CCEEEEEECC-
T ss_pred EEEEecceeEC-CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCccceeeeeEEEEE
Confidence 46789999996 478999999998 99999999999999999999886655 123222111111235689999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCC---EEEEe
Q psy7367 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSR---TVILD 157 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~---llllD 157 (251)
|.+.+++.+|++|++.++..... ......+.+.++ ..++.+++||++||||++.+|+ ++++|
T Consensus 82 q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ld 146 (418)
T 2qag_C 82 KEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFI 146 (418)
T ss_dssp -----CEEEEEEECC--------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEEC
T ss_pred ecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEe
Confidence 99888888999999987543221 111112222222 1455677889999999999999 99999
Q ss_pred CCC-CCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHH
Q psy7367 158 EPT-SGVDPYSRRSIWELLIKYKKGRTVILTTHYMD 192 (251)
Q Consensus 158 EPt-~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~ 192 (251)
||| ++||+... ++++.+..+.+||+|.|..+
T Consensus 147 ePt~~~L~~~d~----~~lk~L~~~v~iIlVinK~D 178 (418)
T 2qag_C 147 APSGHGLKPLDI----EFMKRLHEKVNIIPLIAKAD 178 (418)
T ss_dssp CC-CCSCCHHHH----HHHHHHTTTSEEEEEEESTT
T ss_pred cCcccCCCHHHH----HHHHHHhccCcEEEEEEccc
Confidence 999 69999874 44455555777777777544
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.86 E-value=5.2e-24 Score=176.96 Aligned_cols=168 Identities=13% Similarity=0.067 Sum_probs=102.8
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-----CCCeeEEEEcceeCCCChHHhhcc
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML-----PVSSGTAKIYNHDIRTDMTTIRRS 75 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~-----~p~~G~i~~~g~~~~~~~~~~~~~ 75 (251)
|+++|+++.|+ ..++++ |++++|..++|+|+||||||||++.|+|.. .|+.|.+.+.+.-... ..
T Consensus 4 l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~------~~ 73 (210)
T 1pui_A 4 LNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA------DG 73 (210)
T ss_dssp -------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE------TT
T ss_pred hhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec------CC
Confidence 57899999995 467888 999999999999999999999999999998 7888877653311000 00
Q ss_pred eEEEccCCCCCC----CCC---HHHHHHHHHHh----------c--CCChHHHHHHHHHHHHHcCCCcc-cCCCCCcCCh
Q psy7367 76 LGVCPQYNALFD----KLT---VEEHMWFYSQL----------K--QVPKDLAQLEISNMIVDLGIPHK-RTSLANTLSG 135 (251)
Q Consensus 76 i~~v~q~~~l~~----~lt---v~e~l~~~~~~----------~--~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSg 135 (251)
+- +.+.+.+.. ... ....+..+... . ..........+.+++...++... ...++..+|+
T Consensus 74 ~~-l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 74 KR-LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS 152 (210)
T ss_dssp EE-EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH
T ss_pred EE-EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc
Confidence 11 111111110 000 11112111110 0 00111222345566777888754 3567889999
Q ss_pred hHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh
Q psy7367 136 GMQRK-LSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179 (251)
Q Consensus 136 G~kqr-v~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~ 179 (251)
||+|| +..+++++.+|+++++|||||++|+.+...+++.|.++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 153 GARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp HHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 99999 899999999999999999999999999999999998864
No 112
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.85 E-value=1.2e-23 Score=178.49 Aligned_cols=144 Identities=16% Similarity=0.184 Sum_probs=104.4
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCH----HHH
Q psy7367 21 NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV--SSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTV----EEH 94 (251)
Q Consensus 21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv----~e~ 94 (251)
.-..++|++++|+||||||||||+++|+|+.+| .+|.|.+.+++... ..+..++|+||++.+|+.+++ .||
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~---~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP---GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT---TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc---ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 446789999999999999999999999999986 78999998876532 234679999999877776666 455
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy7367 95 MWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174 (251)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~ 174 (251)
+.++..+++.+. +.++++ +..++++||| ||+.++..+++.
T Consensus 87 ~~~~~~~yg~~~----~~v~~~-------------------------------l~~G~illLD-----LD~~~~~~i~~~ 126 (219)
T 1s96_A 87 AEVFGNYYGTSR----EAIEQV-------------------------------LATGVDVFLD-----IDWQGAQQIRQK 126 (219)
T ss_dssp EEETTEEEEEEH----HHHHHH-------------------------------HTTTCEEEEE-----CCHHHHHHHHHH
T ss_pred HHHHhccCCCCH----HHHHHH-------------------------------HhcCCeEEEE-----ECHHHHHHHHHH
Confidence 444332232221 112222 2347999999 999999999998
Q ss_pred HHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHHHHH
Q psy7367 175 LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219 (251)
Q Consensus 175 l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 219 (251)
+. ++.||+++||+++++.+ |+ +.+| .++++.+.
T Consensus 127 l~---~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 127 MP---HARSIFILPPSKIELDR---RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp CT---TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHHH
T ss_pred cc---CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHHH
Confidence 76 58999999999999876 33 6777 56766554
No 113
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.85 E-value=1.9e-22 Score=182.65 Aligned_cols=145 Identities=18% Similarity=0.137 Sum_probs=104.2
Q ss_pred eEEEEeC-CCcceeeeeeE-------EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEcceeCCCChHHhhcc
Q psy7367 5 NLSKRFP-NGKLAVNGLNV-------NFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-SGTAKIYNHDIRTDMTTIRRS 75 (251)
Q Consensus 5 ~l~~~y~-~~~~il~~isl-------~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~ 75 (251)
.++++|- ...+.|+++.+ ...+|++++|+|||||||||||++|+|+++|+ +|.|...+.++... .+..
T Consensus 93 ~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~---~~~~ 169 (356)
T 3jvv_A 93 GAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV---HESK 169 (356)
T ss_dssp EEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC---CCCS
T ss_pred EEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh---hhcc
Confidence 4555652 22456677766 77889999999999999999999999999987 56665544444321 1234
Q ss_pred eEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEE
Q psy7367 76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI 155 (251)
Q Consensus 76 i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll 155 (251)
.++++|.......++..+ +||+||.++|++|+
T Consensus 170 ~~~v~q~~~~~~~~~~~~------------------------------------------------~La~aL~~~Pdvil 201 (356)
T 3jvv_A 170 KCLVNQREVHRDTLGFSE------------------------------------------------ALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEEBTTTBSCHHH------------------------------------------------HHHHHTTSCCSEEE
T ss_pred ccceeeeeeccccCCHHH------------------------------------------------HHHHHhhhCcCEEe
Confidence 456666543333333322 99999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeCC
Q psy7367 156 LDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG 207 (251)
Q Consensus 156 lDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~G 207 (251)
+|||| |+...+.+.+. ...|.+|++++|+.+.+ ..|||++.|..|
T Consensus 202 lDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 202 VGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp ESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred cCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 99999 66554433332 24599999999999988 679999988554
No 114
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.83 E-value=1e-20 Score=165.24 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=106.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK 102 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~ 102 (251)
.+++|++++|+||||||||||++.+++... .|.++ .|.+... ...+.|+..+... ..+.+.+.-. -.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~-----~~~v~~~~~e~~~---~~~~~r~~~~--g~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP-----TGPVIYLPAEDPP---TAIHHRLHAL--GA 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC-----CCCEEEEESSSCH---HHHHHHHHHH--HT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC-----CccEEEEECCCCH---HHHHHHHHHH--Hh
Confidence 589999999999999999999999998654 46653 3544321 2357777654321 0111122110 11
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHHH---HHHHHHHHh
Q psy7367 103 QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS--GVDPYSR---RSIWELLIK 177 (251)
Q Consensus 103 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~--gLD~~~~---~~l~~~l~~ 177 (251)
.... ....++++.+.+.+..++++..||+||+|++ ++++.+|+++++||||+ ++|+... ..+++.|.+
T Consensus 93 ~~~~----~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~ 165 (279)
T 1nlf_A 93 HLSA----EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEA 165 (279)
T ss_dssp TSCH----HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHH
T ss_pred hcCh----hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHH
Confidence 1221 2355678888988888889999999998765 68888999999999999 9998544 788888888
Q ss_pred hh-C-CCeEEEEeCCHHHHH
Q psy7367 178 YK-K-GRTVILTTHYMDEAD 195 (251)
Q Consensus 178 l~-~-g~tiii~tHd~~~~~ 195 (251)
+. + |+|||+++|+.....
T Consensus 166 l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 166 IAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHCCEEEEEEEC-----
T ss_pred HHHHcCCEEEEEecCCCccc
Confidence 73 3 999999999987764
No 115
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.81 E-value=4.5e-22 Score=183.57 Aligned_cols=176 Identities=11% Similarity=0.032 Sum_probs=116.8
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEE
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQI--TSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGV 78 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~--~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~ 78 (251)
++++ ++.|++ .+ |+++||++++|++ ++|+||||||||||+|+|+|+. ++|.++.. .....++.++|
T Consensus 18 ~~~~-~~~y~~-~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~~ 86 (427)
T 2qag_B 18 PLAG-HVGFDS-LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNTY 86 (427)
T ss_dssp CCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEEE
T ss_pred EEee-EEEECC-ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEEE
Confidence 3455 788964 56 9999999999999 9999999999999999999984 23333321 11123457999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcC-CCh----HHHHHHHHHHHHHc-CCCc----ccCCCC-----------CcCChhH
Q psy7367 79 CPQYNALFDKLTVEEHMWFYSQLKQ-VPK----DLAQLEISNMIVDL-GIPH----KRTSLA-----------NTLSGGM 137 (251)
Q Consensus 79 v~q~~~l~~~ltv~e~l~~~~~~~~-~~~----~~~~~~~~~~l~~~-~l~~----~~~~~~-----------~~LSgG~ 137 (251)
++|++.+++.+||.||+.|+..... ..+ ......+.+++... ++.. ..+.++ ..|+-..
T Consensus 87 v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D 166 (427)
T 2qag_B 87 DLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD 166 (427)
T ss_dssp EEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH
T ss_pred EeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH
Confidence 9999998888999999876532110 000 11234555666665 4431 112221 2455554
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh-hh-CCCeEEEEeCCH
Q psy7367 138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-YK-KGRTVILTTHYM 191 (251)
Q Consensus 138 kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~-l~-~g~tiii~tHd~ 191 (251)
+.++++|..+++++++|||+..|.+.....+.+.+++ +. .|.+|+.+|.|-
T Consensus 167 ---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 167 ---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp ---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred ---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 7999999999999999999999999999999999986 75 599999998763
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.81 E-value=1.9e-23 Score=171.82 Aligned_cols=171 Identities=12% Similarity=0.015 Sum_probs=116.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCCh
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK 106 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~ 106 (251)
|++++|+||||||||||+++|++ |.+|.++++|.++.. ...+++++|....++.+++++++.+.........
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH-----MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT-----TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh-----hhccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999997 678999998865421 1245677776654555688888876543210000
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCCCcC--ChhHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367 107 DLAQLEISNMIVDLGIPHKRTSLANTL--SGGMQRKLSVAM------AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178 (251)
Q Consensus 107 ~~~~~~~~~~l~~~~l~~~~~~~~~~L--SgG~kqrv~ia~------al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l 178 (251)
...+++.+. .....+...++ |+||+|++.++. +++.+|+...+|+ ++|+..+.. ++.+..+
T Consensus 74 ------~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~ 142 (189)
T 2bdt_A 74 ------NDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESK 142 (189)
T ss_dssp ------CEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHT
T ss_pred ------CcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhc
Confidence 000011110 11111112334 889988888888 8899998888884 899998888 8888887
Q ss_pred h-CCCeEEEEeCC-HHHHHhhcCEEEEeeCCEEEeecCHHHH
Q psy7367 179 K-KGRTVILTTHY-MDEADLLGDRIAIIAAGKLQCCGSSVFL 218 (251)
Q Consensus 179 ~-~g~tiii~tHd-~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 218 (251)
. .+.+||.+||. +++++++||+|+ ++|+++..|+++-+
T Consensus 143 ~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 143 GIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp TCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred CCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 5 47899999999 999999999998 99999999987654
No 117
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.81 E-value=1.2e-24 Score=197.36 Aligned_cols=173 Identities=13% Similarity=0.051 Sum_probs=114.3
Q ss_pred eeeeeeEEEeC--CcEEEEEcCCCCcHHHHHHHHhCCCCCCe----eEEEEc----ceeCCCChHHhhcceEEEccCCCC
Q psy7367 16 AVNGLNVNFYE--DQITSFLGHNGAGKTTTISMLMGMLPVSS----GTAKIY----NHDIRTDMTTIRRSLGVCPQYNAL 85 (251)
Q Consensus 16 il~~isl~i~~--Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~----G~i~~~----g~~~~~~~~~~~~~i~~v~q~~~l 85 (251)
+.+.|+++|.+ |+.++|+||||||||||+|+|+|+++|++ |+++++ |.++.....++ +.|++++|++.+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 887764 22221111112 235555554322
Q ss_pred CCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc-cCCCEEEEeC---CC-
Q psy7367 86 FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI-GGSRTVILDE---PT- 160 (251)
Q Consensus 86 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~-~~p~llllDE---Pt- 160 (251)
+. .|+.+|+.+.. .+..+..+..+|+|++|+..+++++. .+|++++||| |+
T Consensus 236 ~~-~t~~~nl~~~~-----------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~ 291 (365)
T 1lw7_A 236 YA-VRHSHKIAFID-----------------------TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWV 291 (365)
T ss_dssp HH-HHHCSSEEEES-----------------------SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC--
T ss_pred HH-HhccCCEEEEe-----------------------CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcc
Confidence 21 23333332210 01111123356677788888888774 6999999999 65
Q ss_pred -----CCCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEEEEeeCCEEEeecCHH
Q psy7367 161 -----SGVDPYSRRSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 216 (251)
Q Consensus 161 -----~gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i~~l~~G~i~~~g~~~ 216 (251)
+++|+..+..+.+.|.++ ++ +.+|++++|. .+.+++|+++.++++ ++..+++.
T Consensus 292 ~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~ 351 (365)
T 1lw7_A 292 DDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEIS 351 (365)
T ss_dssp ---------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCS
T ss_pred cCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--Hhcccchh
Confidence 589999999999999886 33 8999999976 566778887777754 33444433
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.80 E-value=2.5e-23 Score=170.87 Aligned_cols=149 Identities=11% Similarity=0.068 Sum_probs=100.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK 102 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~ 102 (251)
.+++|++++|+||||||||||+++|+|. |+.|.|.++|.++.... ..++.++|++|... +.+++.+|+.+.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI-KHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC-CSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh-hcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 5789999999999999999999999997 78999999987652110 11234677777654 3568899987654321
Q ss_pred --CCChHHHHHHHHHHHHHcCCCccc--CCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367 103 --QVPKDLAQLEISNMIVDLGIPHKR--TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178 (251)
Q Consensus 103 --~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l 178 (251)
+-.. ..++.++..+++.... +.++..+|+|++|+++++|++..+|+++ +|+...+.+++.+..+
T Consensus 80 ~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 80 AKEGYF----VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHTSCE----EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred hccCCe----EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 0000 0011111112222222 4456789999999999999999999876 6898888888887766
Q ss_pred hC-CCeEEEEe
Q psy7367 179 KK-GRTVILTT 188 (251)
Q Consensus 179 ~~-g~tiii~t 188 (251)
.. +..+|.++
T Consensus 148 ~~~~~~~i~t~ 158 (191)
T 1zp6_A 148 GAFEHHVLPVS 158 (191)
T ss_dssp GGGGGGEEECT
T ss_pred CcccccEEECC
Confidence 43 33344443
No 119
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.80 E-value=9.4e-24 Score=188.45 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=112.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC--------CCCeeEEEEcceeCCCC----------------hHHhhcceEEE---c
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGML--------PVSSGTAKIYNHDIRTD----------------MTTIRRSLGVC---P 80 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~--------~p~~G~i~~~g~~~~~~----------------~~~~~~~i~~v---~ 80 (251)
++++|+|+||||||||+|.|.|+. .|+.|+|.++|.++... ...+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999997 78999999999987532 12345567877 6
Q ss_pred cCCCCCCCCCHHHHHHHHH--H----hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE
Q psy7367 81 QYNALFDKLTVEEHMWFYS--Q----LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV 154 (251)
Q Consensus 81 q~~~l~~~ltv~e~l~~~~--~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll 154 (251)
|++.++++.++.||..++. . +...+......++..++..+++.+..++.. +||+||+||+..+++++.+|+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl~ 163 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDVA 163 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTTC
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcccC
Confidence 8777666778887765421 0 100000000111222344455555444433 89999999999999999999988
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhc
Q psy7367 155 ILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLG 198 (251)
Q Consensus 155 llDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~ 198 (251)
||| +.+.+.++++..+.+|+++||+...+..+.
T Consensus 164 --de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~ 196 (318)
T 1nij_A 164 --GEA---------EKLHERLARINARAPVYTVTHGDIDLGLLF 196 (318)
T ss_dssp --SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGGS
T ss_pred --CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHHh
Confidence 999 778888888877899999999755554443
No 120
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.80 E-value=3.2e-19 Score=146.03 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=72.7
Q ss_pred ccCCCCCcCChhHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCE
Q psy7367 125 KRTSLANTLSGGMQRKLSVAMAFIG----GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDR 200 (251)
Q Consensus 125 ~~~~~~~~LSgG~kqrv~ia~al~~----~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~ 200 (251)
...+++..||||||||++||++|+. +|+++||||||++||+.++..+.++|+++.++.++|++||+.... .+||+
T Consensus 57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~ 135 (173)
T 3kta_B 57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADK 135 (173)
T ss_dssp SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSE
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCE
Confidence 3456788999999999999999974 469999999999999999999999999987778899999997665 68999
Q ss_pred EEEe--eCCEE
Q psy7367 201 IAII--AAGKL 209 (251)
Q Consensus 201 i~~l--~~G~i 209 (251)
++.+ .+|..
T Consensus 136 i~~v~~~~g~s 146 (173)
T 3kta_B 136 IIGVSMRDGVS 146 (173)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEecCCEE
Confidence 9855 46653
No 121
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.79 E-value=1.9e-22 Score=173.05 Aligned_cols=142 Identities=18% Similarity=0.170 Sum_probs=106.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh---CCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHH--
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLM---GMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ-- 100 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~-- 100 (251)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+... .....+.+++|+..+++..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST---EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTC---HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCC---hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999 9999999999888765321 223445667888888888899999976432
Q ss_pred ------hcCCChHHHHHHHHHHHH--HcC------------CCcccCCCCCcCChhHHHHHHHHHHH-ccCCCEEEEe--
Q psy7367 101 ------LKQVPKDLAQLEISNMIV--DLG------------IPHKRTSLANTLSGGMQRKLSVAMAF-IGGSRTVILD-- 157 (251)
Q Consensus 101 ------~~~~~~~~~~~~~~~~l~--~~~------------l~~~~~~~~~~LSgG~kqrv~ia~al-~~~p~llllD-- 157 (251)
+.+.+... .+++.+.. .++ +....++++.+||| |+ +|+ +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 22322221 12222221 222 23345678899999 66 778 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHhhh
Q psy7367 158 --EPTSGVDPYSRRSIWELLIKYK 179 (251)
Q Consensus 158 --EPt~gLD~~~~~~l~~~l~~l~ 179 (251)
|||++||+.+++.+.+.+.++.
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999998874
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.79 E-value=4.8e-20 Score=153.98 Aligned_cols=153 Identities=14% Similarity=0.056 Sum_probs=100.9
Q ss_pred cceeeeeeE-EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHH
Q psy7367 14 KLAVNGLNV-NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92 (251)
Q Consensus 14 ~~il~~isl-~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 92 (251)
.+.|+.+.. .+++|++++|+||||||||||++.+++ .+..+.++++. +..+ +..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~-------------------~~~~----~~~ 60 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDT-------------------EGGF----SPE 60 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEES-------------------SCCC----CHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEEC-------------------CCCC----CHH
Confidence 456777765 799999999999999999999999999 33223333322 2111 111
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhH--HHHHHHHHHHccC-CCEEEEeCCCCCCCHHH--
Q psy7367 93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGM--QRKLSVAMAFIGG-SRTVILDEPTSGVDPYS-- 167 (251)
Q Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~--kqrv~ia~al~~~-p~llllDEPt~gLD~~~-- 167 (251)
.+.-.....+... +++++.+ .+..+|+++ +|+++.+++++.+ |+++++||||+.+|+..
T Consensus 61 -~~~~~~~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~ 124 (220)
T 2cvh_A 61 -RLVQMAETRGLNP-------EEALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENR 124 (220)
T ss_dssp -HHHHHHHTTTCCH-------HHHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGS
T ss_pred -HHHHHHHhcCCCh-------HHHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCch
Confidence 1111011111111 1122222 233455664 5688888899986 99999999999999743
Q ss_pred ------HHHHHHHHHhhh-C-CCeEEEEeCCHH-------------HHHhhcCEEEEeeCC
Q psy7367 168 ------RRSIWELLIKYK-K-GRTVILTTHYMD-------------EADLLGDRIAIIAAG 207 (251)
Q Consensus 168 ------~~~l~~~l~~l~-~-g~tiii~tHd~~-------------~~~~~~d~i~~l~~G 207 (251)
...+++.|+++. + +.|||+++|... .++.+||++++|+..
T Consensus 125 ~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 125 SGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 244555577763 3 899999999875 577899999999865
No 123
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.79 E-value=1.4e-20 Score=171.41 Aligned_cols=129 Identities=19% Similarity=0.160 Sum_probs=98.0
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHH
Q psy7367 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-SGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEH 94 (251)
Q Consensus 16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~ 94 (251)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++.. ..+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~---~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY---VFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS---CCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh---hhccCceEEEeee-----------
Confidence 455554 7899999999999999999999999999998 8999887766532 2356788898851
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy7367 95 MWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174 (251)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~ 174 (251)
++++ +..| +.+|+++|..+|+++++|||+ |+.... ..
T Consensus 191 -------------------------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~ 227 (372)
T 2ewv_A 191 -------------------------VGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TA 227 (372)
T ss_dssp -------------------------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HH
T ss_pred -------------------------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HH
Confidence 2222 2333 469999999999999999999 776543 33
Q ss_pred HHhhhCCCeEEEEeCCHHHHHhhcCEEEEe
Q psy7367 175 LIKYKKGRTVILTTHYMDEADLLGDRIAII 204 (251)
Q Consensus 175 l~~l~~g~tiii~tHd~~~~~~~~d~i~~l 204 (251)
++....|.+|+.++|+.+ +...|||++.|
T Consensus 228 l~~~~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 228 LRAAETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp HHHHTTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred HHHHhcCCEEEEEECcch-HHHHHHHHHHh
Confidence 444445899999999965 66677776544
No 124
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.78 E-value=6.2e-20 Score=155.52 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=86.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCC-----CeeEEEEcceeCCC--ChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMG--MLPV-----SSGTAKIYNHDIRT--DMTTIRRSLGVCPQYNALFDKLTVEE 93 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~G--l~~p-----~~G~i~~~g~~~~~--~~~~~~~~i~~v~q~~~l~~~ltv~e 93 (251)
.|++|++++|+||||||||||++.|++ +.+| ..|.+++++++... ....+.+.+++.+|+ +.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--------~~~ 91 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--------VLD 91 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH--------HHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH--------Hhh
Confidence 589999999999999999999999999 5665 57888888765311 111222344443331 112
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHH-HHHHHHHc--cCCCEEEEeCCCCCCCHH----
Q psy7367 94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRK-LSVAMAFI--GGSRTVILDEPTSGVDPY---- 166 (251)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqr-v~ia~al~--~~p~llllDEPt~gLD~~---- 166 (251)
|+.+ ...++..+... +.-+..++ .+|+++++|||++.+|+.
T Consensus 92 ~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~ 139 (243)
T 1n0w_A 92 NVAY--------------------------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR 139 (243)
T ss_dssp TEEE--------------------------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC------
T ss_pred CeEE--------------------------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC
Confidence 1110 01122222111 11122222 689999999999999985
Q ss_pred ---H-----HHHHHHHHHhh-hC-CCeEEEEeCCHHHHHh-------------------hcCEEEEeeCC
Q psy7367 167 ---S-----RRSIWELLIKY-KK-GRTVILTTHYMDEADL-------------------LGDRIAIIAAG 207 (251)
Q Consensus 167 ---~-----~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~-------------------~~d~i~~l~~G 207 (251)
. ...++..|.++ ++ |+|||+++|....... +||++++|+.+
T Consensus 140 ~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 140 GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 34455555555 33 9999999997765543 79999999865
No 125
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.78 E-value=2.7e-23 Score=186.98 Aligned_cols=171 Identities=15% Similarity=0.125 Sum_probs=120.1
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----HHhhcce
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----TTIRRSL 76 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~~i 76 (251)
++++++++|+ .+.+|+++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... ...+.++
T Consensus 31 e~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i 109 (337)
T 2qm8_A 31 ESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRM 109 (337)
T ss_dssp TCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGS
T ss_pred eeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhh
Confidence 4567777884 367999999999999999999999999999999999999999999999998874211 1245679
Q ss_pred EEEccCCCCCCCCC------------HHHHHHHH-----------------------------HHhcCCC-hHHHH---H
Q psy7367 77 GVCPQYNALFDKLT------------VEEHMWFY-----------------------------SQLKQVP-KDLAQ---L 111 (251)
Q Consensus 77 ~~v~q~~~l~~~lt------------v~e~l~~~-----------------------------~~~~~~~-~~~~~---~ 111 (251)
++++|++.+|...+ +.|.+... ..+.... ..+.+ .
T Consensus 110 ~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~ 189 (337)
T 2qm8_A 110 ARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKK 189 (337)
T ss_dssp TTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCT
T ss_pred eeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHH
Confidence 99999988775321 23332110 0000000 01100 0
Q ss_pred HHHHHHHHcCCCcccCC-CCCcCChhHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367 112 EISNMIVDLGIPHKRTS-LANTLSGGMQRKLSVAMAFIG------GSRTVILDEPTSGVDPYSRRSIWELLIKY 178 (251)
Q Consensus 112 ~~~~~l~~~~l~~~~~~-~~~~LSgG~kqrv~ia~al~~------~p~llllDEPt~gLD~~~~~~l~~~l~~l 178 (251)
.+.+....+.+ ...|. ....+|+|++|++..|++++. .|++++ +|++|......+++.|.++
T Consensus 190 ~i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 190 GIFELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp THHHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHhccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 11122222223 33442 335789999999999999987 688876 9999999999999999875
No 126
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.77 E-value=7.2e-21 Score=172.63 Aligned_cols=138 Identities=14% Similarity=0.134 Sum_probs=106.0
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc-cCCCCCCCCCHHHHH
Q psy7367 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP-QYNALFDKLTVEEHM 95 (251)
Q Consensus 17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~-q~~~l~~~ltv~e~l 95 (251)
++++||++++|++++|+||||||||||+++|+|+++|++|.|+++|..- ......++.++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e-~~~~~~~~~v~~v~~q~~~~---------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE-LFLPDHPNHVHLFYPSEAKE---------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC-CCCTTCSSEEEEECC---------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc-cCccccCCEEEEeecCcccc----------
Confidence 3999999999999999999999999999999999999999999998531 11222456789998 65431
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy7367 96 WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175 (251)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l 175 (251)
.++++..++..|+.++..+|+.+++|||.. ..+.+.+
T Consensus 234 ------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l 270 (361)
T 2gza_A 234 ------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFI 270 (361)
T ss_dssp -----------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHH
T ss_pred ------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHH
Confidence 012333477888999999999999999986 3466677
Q ss_pred HhhhCC-CeEEEEeCCHHHHHhhcCEEEEeeCCEE
Q psy7367 176 IKYKKG-RTVILTTHYMDEADLLGDRIAIIAAGKL 209 (251)
Q Consensus 176 ~~l~~g-~tiii~tHd~~~~~~~~d~i~~l~~G~i 209 (251)
..+..| .|++.++|..+ +...++|+..+..+..
T Consensus 271 ~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~~ 304 (361)
T 2gza_A 271 NVAASGHGGSITSCHAGS-CELTFERLALMVLQNR 304 (361)
T ss_dssp HHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTST
T ss_pred HHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhccc
Confidence 777664 57899999965 7778999999988753
No 127
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.76 E-value=2.4e-19 Score=162.16 Aligned_cols=122 Identities=18% Similarity=0.198 Sum_probs=93.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCeeEEEEc-ceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-VSSGTAKIY-NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE 93 (251)
Q Consensus 16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-p~~G~i~~~-g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 93 (251)
-++++++. .+|++++|+||||||||||+|+|+|+.+ |++|+|.++ |+... ...++.+++++|+..+++..++++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~---tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH---TTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc---ceEEEEEEEECCCCEecCcccHHH
Confidence 45677764 4899999999999999999999999999 999999987 76542 123567999999998888888888
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHH
Q psy7367 94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147 (251)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al 147 (251)
+. +.+.+.++....+.++++.+++..+.+.++.+|| ||+||++||+++
T Consensus 281 ~~-----l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 FG-----LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CC-----CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred hh-----hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 41 2345555666778889999999999999999999 999999999875
No 128
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.76 E-value=1e-19 Score=163.03 Aligned_cols=165 Identities=16% Similarity=0.099 Sum_probs=116.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----HHhh--cceEEEccCCCCCCCCCHHHHH
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----TTIR--RSLGVCPQYNALFDKLTVEEHM 95 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~~--~~i~~v~q~~~l~~~ltv~e~l 95 (251)
..++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... ..++ ..+.+++|...++|.+++++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 34789999999999999999999999999999999999999985321 1222 3566999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy7367 96 WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175 (251)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l 175 (251)
.++.... ... -+++..|+.+.....+.+|| .+++++..++++++||.++. ..+++.+
T Consensus 205 ~~~~~~~-~d~--------vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-------~~~~~~~ 261 (328)
T 3e70_C 205 QHAKARG-IDV--------VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-------NAIVEQA 261 (328)
T ss_dssp HHHHHHT-CSE--------EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-------THHHHHH
T ss_pred HHHHhcc-chh--------hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-------HHHHHHH
Confidence 8754311 000 01233344333333344444 48999999999999996654 3455566
Q ss_pred Hhhh--CCCeEEEEeCCH---------HHHHhhcCEEEEeeCCEEE
Q psy7367 176 IKYK--KGRTVILTTHYM---------DEADLLGDRIAIIAAGKLQ 210 (251)
Q Consensus 176 ~~l~--~g~tiii~tHd~---------~~~~~~~d~i~~l~~G~i~ 210 (251)
+.+. .+.|+|++||.- +.+....-.|.++..|+-+
T Consensus 262 ~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 262 RQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 6664 389999999954 2334445667777777653
No 129
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.76 E-value=9.4e-22 Score=158.83 Aligned_cols=86 Identities=23% Similarity=0.198 Sum_probs=72.5
Q ss_pred eEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCC
Q psy7367 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNA 84 (251)
Q Consensus 5 ~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~ 84 (251)
+++++|+ ++.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.... ..+ .++||++.
T Consensus 12 ~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~-~~~---~~~~q~~~ 85 (158)
T 1htw_A 12 FSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY-NIA---GKMIYHFD 85 (158)
T ss_dssp HHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE-EET---TEEEEEEE
T ss_pred HHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec-cCC---Ccceeccc
Confidence 4566775 367999999999999999999999999999999999999 99999999998874211 111 27999998
Q ss_pred CCCCCCHHHHHHH
Q psy7367 85 LFDKLTVEEHMWF 97 (251)
Q Consensus 85 l~~~ltv~e~l~~ 97 (251)
+| .+|+.||+.+
T Consensus 86 l~-~ltv~e~l~~ 97 (158)
T 1htw_A 86 LY-RLADPEELEF 97 (158)
T ss_dssp CT-TCSCTTHHHH
T ss_pred cc-cCCcHHHHHH
Confidence 88 8999999965
No 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.75 E-value=4.4e-20 Score=172.68 Aligned_cols=154 Identities=17% Similarity=0.155 Sum_probs=108.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----HH--hhcceEEEccCCCCCCCC
Q psy7367 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----TT--IRRSLGVCPQYNALFDKL 89 (251)
Q Consensus 17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----~~--~~~~i~~v~q~~~l~~~l 89 (251)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.|.++.... .. .+++|+|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46899999999999999999999999999999999999999999988764321 12 356899999998888888
Q ss_pred CHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc-cCC-CEEEEeCCCCCCCHHH
Q psy7367 90 TVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI-GGS-RTVILDEPTSGVDPYS 167 (251)
Q Consensus 90 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~-~~p-~llllDEPt~gLD~~~ 167 (251)
++++|+.++... +... + +++..|..+.....+.+| +|++.+++++. ..| +++|...|++|.|..
T Consensus 363 tV~e~l~~a~~~-~~Dv------V--LIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al- 428 (503)
T 2yhs_A 363 VIFDAIQAAKAR-NIDV------L--IADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV- 428 (503)
T ss_dssp HHHHHHHHHHHT-TCSE------E--EECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH-
T ss_pred HHHHHHHHHHhc-CCCE------E--EEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH-
Confidence 999999886431 1110 0 122222221111112223 47888888764 456 456666688886654
Q ss_pred HHHHHHHHHhhh--CCCeEEEEeC
Q psy7367 168 RRSIWELLIKYK--KGRTVILTTH 189 (251)
Q Consensus 168 ~~~l~~~l~~l~--~g~tiii~tH 189 (251)
+.++.++ -+.|.+++||
T Consensus 429 -----~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 429 -----SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp -----HHHHHHHHHTCCSEEEEEC
T ss_pred -----HHHHHHHhhcCCCEEEEEc
Confidence 3344443 3789999999
No 131
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.73 E-value=4.6e-20 Score=163.50 Aligned_cols=121 Identities=11% Similarity=0.111 Sum_probs=89.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE---cceeCCCChHHhh-cceEEEccCCCCC-----CCCCHHH
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI---YNHDIRTDMTTIR-RSLGVCPQYNALF-----DKLTVEE 93 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~---~g~~~~~~~~~~~-~~i~~v~q~~~l~-----~~ltv~e 93 (251)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|+++.......+ +.+||++|.|.+. +++|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 99999999999 9988754332222 3689999998653 67899 8
Q ss_pred HH--HHH------HHhcC-CChHHHHHHHHHHHHHcCCCc-ccCCCCCcCChhHHHHHHHHH
Q psy7367 94 HM--WFY------SQLKQ-VPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAM 145 (251)
Q Consensus 94 ~l--~~~------~~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~kqrv~ia~ 145 (251)
|+ .|. +++++ ....+...++.++++.++|.+ ..++++..|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88 443 12332 122233456889999999986 788899999998899999986
No 132
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.71 E-value=4e-21 Score=177.37 Aligned_cols=146 Identities=15% Similarity=0.130 Sum_probs=103.3
Q ss_pred EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----HHhhcceE
Q psy7367 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----TTIRRSLG 77 (251)
Q Consensus 3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~~i~ 77 (251)
++++++.|+ ...+|+++ +. .+|++++|+|||||||||||++|+|+++|++|+|.+.+.++.... ..++++++
T Consensus 146 l~~Lg~~~~-~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g 222 (418)
T 1p9r_A 146 LHSLGMTAH-NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVD 222 (418)
T ss_dssp GGGSCCCHH-HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGT
T ss_pred HHHcCCCHH-HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccC
Confidence 344555553 24467777 43 799999999999999999999999999999999999998774311 12334566
Q ss_pred EEc---------cCCCC--CCC----CCHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHH
Q psy7367 78 VCP---------QYNAL--FDK----LTVEEHMWFYSQLK----QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQ 138 (251)
Q Consensus 78 ~v~---------q~~~l--~~~----ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~k 138 (251)
+.| |+|.+ +.. .|+.+++.+...-+ ......... +.+.|..+++.... .+.+|||||+
T Consensus 223 ~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~~~LSgg~~ 299 (418)
T 1p9r_A 223 MTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--ISSSLLGVLA 299 (418)
T ss_dssp BCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HHHHEEEEEE
T ss_pred cCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HHHHHHHHHH
Confidence 655 88865 333 58899987754211 001111112 33357778988764 6889999999
Q ss_pred HHHHHHHHHccCCCEEEE
Q psy7367 139 RKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 139 qrv~ia~al~~~p~llll 156 (251)
|| ||++|+.+|++..-
T Consensus 300 QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 300 QR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EE--EEEEECTTTCEEEE
T ss_pred HH--hhhhhcCCCCccCC
Confidence 99 99999999998763
No 133
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.71 E-value=4.6e-17 Score=147.85 Aligned_cols=77 Identities=32% Similarity=0.414 Sum_probs=69.8
Q ss_pred CCCCcCChhHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCE
Q psy7367 128 SLANTLSGGMQRKL------SVAMAFIGG-SRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDR 200 (251)
Q Consensus 128 ~~~~~LSgG~kqrv------~ia~al~~~-p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~ 200 (251)
+++..|||||+||+ ++|++++.+ |+++||||||++||+..+..+.+.|.++.++.+||++||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 46789999999988 567889999 999999999999999999999999999865678999999986 5789999
Q ss_pred EEEee
Q psy7367 201 IAIIA 205 (251)
Q Consensus 201 i~~l~ 205 (251)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 134
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=3e-17 Score=146.77 Aligned_cols=138 Identities=17% Similarity=0.154 Sum_probs=79.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC-CCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChH
Q psy7367 29 ITSFLGHNGAGKTTTISMLMG-MLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD 107 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~ 107 (251)
.+.|.||||+|||||++++++ +..|+.|.+.++|.+...... .+..+++++|.+.+....+- . ......
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~ 107 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN-RKLELNVVSSPYHLEITPSD--M-------GNNDRI 107 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------------CCEECSSEEEECCC-------------CCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc-ccceeeeecccceEEecHhh--c-------CCcchH
Confidence 389999999999999999999 889999999999987643222 25678899887654221110 0 000111
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEE
Q psy7367 108 LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILT 187 (251)
Q Consensus 108 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~ 187 (251)
..++.++++.+..++.... .||| +..+|+++|+|||++ ||+.++..+++.+.+...+.++|++
T Consensus 108 ~~~~~i~~~~~~~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~ 170 (354)
T 1sxj_E 108 VIQELLKEVAQMEQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMV 170 (354)
T ss_dssp HHHHHHHHHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred HHHHHHHHHHHhccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEE
Confidence 1222233332222332221 5666 788999999999999 9999999999999988778999999
Q ss_pred eCCHHH
Q psy7367 188 THYMDE 193 (251)
Q Consensus 188 tHd~~~ 193 (251)
||+++.
T Consensus 171 t~~~~~ 176 (354)
T 1sxj_E 171 CDSMSP 176 (354)
T ss_dssp ESCSCS
T ss_pred eCCHHH
Confidence 999753
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.68 E-value=5.4e-18 Score=138.19 Aligned_cols=112 Identities=18% Similarity=0.194 Sum_probs=77.8
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHH
Q psy7367 21 NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ 100 (251)
Q Consensus 21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~ 100 (251)
+|++++|+.++|+||||||||||+++|++.+.|.+|.. +.| +++.+.+.....
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-----------------~~~----------~~~~~~~~~~~~ 84 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-----------------GYF----------FDTKDLIFRLKH 84 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-----------------CCE----------EEHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-----------------EEE----------EEHHHHHHHHHH
Confidence 57788999999999999999999999999887665521 111 233333322110
Q ss_pred hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHhhh
Q psy7367 101 LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS-GVDPYSRRSIWELLIKYK 179 (251)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~-gLD~~~~~~l~~~l~~l~ 179 (251)
....-... -+...+.+|++|+||||++ ++|+..+..+.+++.+..
T Consensus 85 ---------------~~~~~~~~-------------------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~ 130 (180)
T 3ec2_A 85 ---------------LMDEGKDT-------------------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRY 130 (180)
T ss_dssp ---------------HHHHTCCS-------------------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH
T ss_pred ---------------HhcCchHH-------------------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH
Confidence 01100000 0112234999999999985 999999999999998874
Q ss_pred -CCCeEEEEeCCHHH
Q psy7367 180 -KGRTVILTTHYMDE 193 (251)
Q Consensus 180 -~g~tiii~tHd~~~ 193 (251)
+|+++|++||....
T Consensus 131 ~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 131 NNLKSTIITTNYSLQ 145 (180)
T ss_dssp HTTCEEEEECCCCSC
T ss_pred HcCCCEEEEcCCChh
Confidence 78999999997643
No 136
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.68 E-value=7.2e-20 Score=172.96 Aligned_cols=170 Identities=15% Similarity=0.189 Sum_probs=113.7
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee-CCCChHHhhcceEEEccCCC---------
Q psy7367 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD-IRTDMTTIRRSLGVCPQYNA--------- 84 (251)
Q Consensus 15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~-~~~~~~~~~~~i~~v~q~~~--------- 84 (251)
.+++++++.+++|++++|+|||||||||||++|+|+++|++|.|++.|.+ +.... ...+++..|...
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 46789999999999999999999999999999999999999999998865 22110 123444443221
Q ss_pred -------------CCCCCCHHHHHHHHHHhc-CCCh--HHHHHHHHHHHHHcCC-----Cc----ccC---CCCCcCChh
Q psy7367 85 -------------LFDKLTVEEHMWFYSQLK-QVPK--DLAQLEISNMIVDLGI-----PH----KRT---SLANTLSGG 136 (251)
Q Consensus 85 -------------l~~~ltv~e~l~~~~~~~-~~~~--~~~~~~~~~~l~~~~l-----~~----~~~---~~~~~LSgG 136 (251)
++..++..|++.+..... +... ......+.++++++.. .. ..+ .....+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 234566666555433322 2100 0000112333444332 21 112 234568999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEE--EeCCHHHHHhhcC
Q psy7367 137 MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVIL--TTHYMDEADLLGD 199 (251)
Q Consensus 137 ~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii--~tHd~~~~~~~~d 199 (251)
|+||+++|. + | |+||||.....+++.+.++. .+.|+++ +||++++++..|+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999987651 1 7 99999998888888887775 4889885 9999999998885
No 137
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.67 E-value=1e-20 Score=169.63 Aligned_cols=173 Identities=18% Similarity=0.210 Sum_probs=120.2
Q ss_pred EEeEEEEeCCCcceeeeeeEEEeCC-------cEEEEEcCCCCcHHHHHHHHhCCC----CCCeeEEEEcceeCCCChHH
Q psy7367 3 IQNLSKRFPNGKLAVNGLNVNFYED-------QITSFLGHNGAGKTTTISMLMGML----PVSSGTAKIYNHDIRTDMTT 71 (251)
Q Consensus 3 i~~l~~~y~~~~~il~~isl~i~~G-------e~~~liG~NGaGKSTLlk~l~Gl~----~p~~G~i~~~g~~~~~~~~~ 71 (251)
.++++..|+ ...+++++++.+++| +.++|+||||+|||||+++|+|.+ .|++|.+..++.++......
T Consensus 21 ~~~l~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~ 99 (334)
T 1in4_A 21 PKSLDEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTS 99 (334)
T ss_dssp CSSGGGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHH
T ss_pred CccHHHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHH
Confidence 455666675 367899999999887 899999999999999999999988 67788777666554211111
Q ss_pred h-hcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC----hHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHH
Q psy7367 72 I-RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP----KDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMA 146 (251)
Q Consensus 72 ~-~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~a 146 (251)
. +..|.|++|...+.+ ++.|++.......... .....+.+...+..+++.. ..+++..||+|++||+.++
T Consensus 100 ~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~-- 174 (334)
T 1in4_A 100 LERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII-- 174 (334)
T ss_dssp CCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE--
T ss_pred ccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce--
Confidence 2 457999999887765 7888885444332211 1122234555666677655 6678899999999998654
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhC--CCeEEEEeCCHHHHHhhcCE
Q psy7367 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDR 200 (251)
Q Consensus 147 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--g~tiii~tHd~~~~~~~~d~ 200 (251)
.+||+.+.+.+.++|++..+ + ++|+.+.+..+|++
T Consensus 175 --------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 175 --------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp --------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred --------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 78888889999999987642 4 36888888887764
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.66 E-value=2.6e-17 Score=151.06 Aligned_cols=145 Identities=14% Similarity=0.173 Sum_probs=91.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHH--HHhCCCCCCee-----EEEEcceeCCCC--hHHhhcceEEEccCCCCCCCCCHHH
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTIS--MLMGMLPVSSG-----TAKIYNHDIRTD--MTTIRRSLGVCPQYNALFDKLTVEE 93 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk--~l~Gl~~p~~G-----~i~~~g~~~~~~--~~~~~~~i~~v~q~~~l~~~ltv~e 93 (251)
-|++|+++.|+||||||||||++ +++++.+|+.| .+++++++.... ...+.+++++.+| ++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~vle 245 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DALN 245 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hHhh
Confidence 68999999999999999999999 45677776544 788887653221 1122334444333 2333
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHH--HHHHHHHHH--ccCCCEEEEeCCCCCCCHHHH-
Q psy7367 94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQ--RKLSVAMAF--IGGSRTVILDEPTSGVDPYSR- 168 (251)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~k--qrv~ia~al--~~~p~llllDEPt~gLD~~~~- 168 (251)
|+.+.. ...++. +.+.-+..+ ..+|+++++|||++.+|+...
T Consensus 246 ni~~~~---------------------------------~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg 292 (400)
T 3lda_A 246 NVAYAR---------------------------------AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG 292 (400)
T ss_dssp TEEEEE---------------------------------CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-----
T ss_pred cEEEec---------------------------------cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC
Confidence 332210 011111 111111222 257999999999999997543
Q ss_pred -----------HHHHHHHHhhh-C-CCeEEEEeCCH-------------------HHHHhhcCEEEEeeCCE
Q psy7367 169 -----------RSIWELLIKYK-K-GRTVILTTHYM-------------------DEADLLGDRIAIIAAGK 208 (251)
Q Consensus 169 -----------~~l~~~l~~l~-~-g~tiii~tHd~-------------------~~~~~~~d~i~~l~~G~ 208 (251)
..+++.|+++. + |.|||+++|.. ..+..+||.+++|+.++
T Consensus 293 ~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 293 RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 56777777774 3 99999999982 23577799999998763
No 139
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.66 E-value=3.7e-19 Score=145.41 Aligned_cols=136 Identities=18% Similarity=0.157 Sum_probs=85.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEcceeCCC-C---hHHhh-cceE----EEccCCCCCCCCCHHHHH
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGMLPVS---SGTAKIYNHDIRT-D---MTTIR-RSLG----VCPQYNALFDKLTVEEHM 95 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~-~---~~~~~-~~i~----~v~q~~~l~~~ltv~e~l 95 (251)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++.. . ...+| +.++ +++|++.+|- .+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec--
Confidence 589999999999999999999999998 9999999988532 1 23455 3577 8888876551 00
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHH-c-CCCcccCCCCCcCChhHHHHHHHHHHHccCCCEE-------EEeCCCC---CC
Q psy7367 96 WFYSQLKQVPKDLAQLEISNMIVD-L-GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV-------ILDEPTS---GV 163 (251)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~ll-------llDEPt~---gL 163 (251)
. ..+....+.++++. + +++...- ..|||||+||++||||++.+|++. .=|.|.. -+
T Consensus 77 -------~--~~~~~a~l~~~i~~~l~g~dt~i~---EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f 144 (171)
T 2f1r_A 77 -------V--SEEEGNDLDWIYERYLSDYDLVIT---EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWF 144 (171)
T ss_dssp -------C--CHHHHTCHHHHHHHHTTTCSEEEE---ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEE
T ss_pred -------C--ChhhhhCHHHHHHhhCCCCCEEEE---CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCccc
Confidence 0 01111134455555 4 4443332 249999999999999999999873 2244431 23
Q ss_pred CHHHHHHHHHHHHhh-hCC
Q psy7367 164 DPYSRRSIWELLIKY-KKG 181 (251)
Q Consensus 164 D~~~~~~l~~~l~~l-~~g 181 (251)
|....+.+.+++.+. .+|
T Consensus 145 ~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 145 RRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CTTCHHHHHHHHHHHHTC-
T ss_pred CcccHHHHHHHHHHHHhcc
Confidence 444556677776554 443
No 140
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.65 E-value=2.1e-17 Score=152.40 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=96.4
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEc----------cCCCCC
Q psy7367 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCP----------QYNALF 86 (251)
Q Consensus 17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~----------q~~~l~ 86 (251)
-++++|+++.|+.++|+|+|||||||||++|+|..+ .+.+.+... +...+++++ +.+.+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT----l~p~~G~V~~~~~~~~~l~DtpGli 216 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT----LSPNLGVVEVSEEERFTLADIPGII 216 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS----SCCEEEEEECSSSCEEEEEECCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce----ecceeeEEEecCcceEEEEeccccc
Confidence 479999999999999999999999999999999842 222322211 112234443 333332
Q ss_pred CCCCHHHHHHHHHHhcCCChHHH--HHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy7367 87 DKLTVEEHMWFYSQLKQVPKDLA--QLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164 (251)
Q Consensus 87 ~~ltv~e~l~~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD 164 (251)
.. ..++ .++..... .++++.++..+++. +.++.+||+|++|++++|++|+..|.++++ +.+|
T Consensus 217 ~~--a~~~-------~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlD 280 (416)
T 1udx_A 217 EG--ASEG-------KGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVD 280 (416)
T ss_dssp CC--GGGS-------CCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCT
T ss_pred cc--hhhh-------hhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCC
Confidence 21 1111 11111110 11233344445554 567889999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHH-hhh-CCCeEEEEe-CCHHHHH
Q psy7367 165 PYSRRSIWELLI-KYK-KGRTVILTT-HYMDEAD 195 (251)
Q Consensus 165 ~~~~~~l~~~l~-~l~-~g~tiii~t-Hd~~~~~ 195 (251)
+... ..++.+. .++ .+.+++++| |.-+-+.
T Consensus 281 l~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 281 LLEE-EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp TSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred hhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 9877 4444444 444 376766655 4443333
No 141
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.64 E-value=6.2e-19 Score=156.45 Aligned_cols=138 Identities=14% Similarity=0.092 Sum_probs=100.3
Q ss_pred CEEEeEEEEeCCCcceeeeeeEEE-------------------eCCcEEEEEcCCCCcHHHHHHHHhCCCC--CCeeEEE
Q psy7367 1 MAIQNLSKRFPNGKLAVNGLNVNF-------------------YEDQITSFLGHNGAGKTTTISMLMGMLP--VSSGTAK 59 (251)
Q Consensus 1 l~i~~l~~~y~~~~~il~~isl~i-------------------~~Ge~~~liG~NGaGKSTLlk~l~Gl~~--p~~G~i~ 59 (251)
|+++||++.| .++++++++.+ .+|+++||+||||||||||+++|+|++. |++|+|.
T Consensus 38 i~~~~v~~~y---~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 38 LSLEEVAEIY---LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp CCHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred cchHhHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 3567788888 26899999988 8999999999999999999999999988 9999999
Q ss_pred E---cceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChh
Q psy7367 60 I---YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGG 136 (251)
Q Consensus 60 ~---~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 136 (251)
+ +|.... ...++.++++ |...+++.+++.+++.+...+..... ....+....+.+
T Consensus 115 vi~~d~~~~~---~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~------------------~i~~P~~~~~~~ 172 (308)
T 1sq5_A 115 LITTDGFLHP---NQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP------------------NVTAPVYSHLIY 172 (308)
T ss_dssp EEEGGGGBCC---HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS------------------CEEECCEETTTT
T ss_pred EEecCCccCc---HHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC------------------ceeccccccccc
Confidence 9 887642 1234568888 88888888999999988765542110 011122222222
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q psy7367 137 MQRKLSVAMAFIGGSRTVILDEPTSGVDP 165 (251)
Q Consensus 137 ~kqrv~ia~al~~~p~llllDEPt~gLD~ 165 (251)
+|+..+.+.+.+|+++|+|.|....++
T Consensus 173 --~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 173 --DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp --EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred --CcccccceecCCCCEEEECchhhCCCc
Confidence 333333345678999999999998873
No 142
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.64 E-value=2.5e-18 Score=152.13 Aligned_cols=110 Identities=11% Similarity=0.177 Sum_probs=77.2
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE---cceeCCCChHHhh-cceEEEccCCC-------------
Q psy7367 22 VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI---YNHDIRTDMTTIR-RSLGVCPQYNA------------- 84 (251)
Q Consensus 22 l~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~---~g~~~~~~~~~~~-~~i~~v~q~~~------------- 84 (251)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++.......+ +.+||++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456689999999999999999999999999999999999 8988754322222 36899999975
Q ss_pred ---CCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCC-cccCCCCCcCCh
Q psy7367 85 ---LFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSG 135 (251)
Q Consensus 85 ---l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSg 135 (251)
+|+++|+ ||+.|....+ ..+...++.++++.++|. +..++++.+||.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~---~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNH---VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCS---SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcC---CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5888899 9988753211 122235688999999996 777888888885
No 143
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.63 E-value=1.7e-16 Score=126.48 Aligned_cols=91 Identities=14% Similarity=0.268 Sum_probs=70.8
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee--EEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG--TAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE 93 (251)
Q Consensus 16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G--~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 93 (251)
+|+++ +|+.++|+||||||||||++++++...+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 55565 8999999999999999999999998876 46 455544332110
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7367 94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173 (251)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~ 173 (251)
+++.+|++|++|||++ +++..++.+++
T Consensus 79 ----------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~ 105 (149)
T 2kjq_A 79 ----------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFS 105 (149)
T ss_dssp ----------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHH
T ss_pred ----------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHH
Confidence 2356899999999998 66666899999
Q ss_pred HHHhhh-CCCe-EEEEeCC
Q psy7367 174 LLIKYK-KGRT-VILTTHY 190 (251)
Q Consensus 174 ~l~~l~-~g~t-iii~tHd 190 (251)
++..+. +|++ +|++||.
T Consensus 106 li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 106 IFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHcCCcEEEEECCC
Confidence 998875 4787 8889884
No 144
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.63 E-value=3.6e-19 Score=162.94 Aligned_cols=168 Identities=11% Similarity=0.041 Sum_probs=124.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhC------------CCCCCeeEEEEcceeCCCChHHh--hcce---EEEccCCCC
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMG------------MLPVSSGTAKIYNHDIRTDMTTI--RRSL---GVCPQYNAL 85 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~G------------l~~p~~G~i~~~g~~~~~~~~~~--~~~i---~~v~q~~~l 85 (251)
.+++|..++|+|+||||||||+|+|+| ...|+.|.|.+.|..+....... ++.+ .++++.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999 66799999999875432100111 2223 477888998
Q ss_pred CCCCCHHHHH--HHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCC--CEEEEeCCCC
Q psy7367 86 FDKLTVEEHM--WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGS--RTVILDEPTS 161 (251)
Q Consensus 86 ~~~ltv~e~l--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p--~llllDEPt~ 161 (251)
+...+..|++ .|...++... .++..++..+ +..+..+|++. +| ++.++|||+.
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d---------~il~Vvd~~~--d~~i~~v~~~~------------dP~~di~ildeel~ 152 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVD---------AIYQVVRAFD--DAEIIHVEGDV------------DPIRDLSIIVDELL 152 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCS---------EEEEEEECCC--TTCSSCCSSSS------------CHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHH---------HHHHHHhccc--cceeeeecccc------------CcchhhhhchhhhH
Confidence 8888876665 4443333211 1222222222 34555577764 89 9999999999
Q ss_pred CCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEEE-EeeCC-EEEeecCH
Q psy7367 162 GVDPYSRRSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRIA-IIAAG-KLQCCGSS 215 (251)
Q Consensus 162 gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i~-~l~~G-~i~~~g~~ 215 (251)
++|+...+..++.+... .. |.||+ +|++..+..+|+++. +|++| +++..++.
T Consensus 153 ~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 153 IKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 99999999999999987 54 77764 999999999999999 99999 88876653
No 145
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.62 E-value=8.5e-18 Score=148.17 Aligned_cols=126 Identities=13% Similarity=0.037 Sum_probs=90.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHH-----
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYS----- 99 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~----- 99 (251)
.++.+++|.||+|||||||.+.|.+++.+. | . . ++.+.+|+|+..+++. +.++|+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~-------~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G-------G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G-------G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C-------C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 578999999999999999999999998763 2 0 0 3345666999988764 8889987752
Q ss_pred -HhcCCChHHHHHHHHHHHHHcCCC--------cccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q psy7367 100 -QLKQVPKDLAQLEISNMIVDLGIP--------HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166 (251)
Q Consensus 100 -~~~~~~~~~~~~~~~~~l~~~~l~--------~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~ 166 (251)
..++.+.......+.+.++.+.-. .....+...+||||+||+++|++...+|+|+|+|||++++|+.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 112223222234566667776432 1234556799999999999984333399999999999999985
No 146
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.60 E-value=1.1e-19 Score=158.96 Aligned_cols=145 Identities=12% Similarity=0.040 Sum_probs=107.0
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEccCC-CCCCCCCH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYN-ALFDKLTV 91 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~-~l~~~ltv 91 (251)
..+++++++++++| ++|+||||||||||+|+|+|...+ |.|.++|.++.. ......+.++++||.. ..++.+++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 45889999999999 999999999999999999999877 799999988743 2233456688889875 55666677
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCC----------
Q psy7367 92 EEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS---------- 161 (251)
Q Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~---------- 161 (251)
.|++......+.. .... .+....++.+.+|||||+||+.+++|+.++|++| |||+.
T Consensus 109 ~Deid~~~~~r~~------~~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~ 174 (274)
T 2x8a_A 109 FDEVDALCPRRSD------RETG------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLF 174 (274)
T ss_dssp EETCTTTCC---------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEE
T ss_pred eehhhhhhcccCC------Ccch------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEE
Confidence 7777553221110 0000 1234456678899999999999999999999985 99864
Q ss_pred --CCCHHHHHHHHHHHH
Q psy7367 162 --GVDPYSRRSIWELLI 176 (251)
Q Consensus 162 --gLD~~~~~~l~~~l~ 176 (251)
--|...+..+++.+.
T Consensus 175 ~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 175 VGLPPPADRLAILKTIT 191 (274)
T ss_dssp CCSCCHHHHHHHHHHHT
T ss_pred eCCcCHHHHHHHHHHHH
Confidence 347777777777654
No 147
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.60 E-value=1.3e-17 Score=148.00 Aligned_cols=118 Identities=13% Similarity=0.210 Sum_probs=72.5
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE---cceeCCCChHHhhcceEEEccCCCCCC----CCCHHHH
Q psy7367 22 VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI---YNHDIRTDMTTIRRSLGVCPQYNALFD----KLTVEEH 94 (251)
Q Consensus 22 l~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~---~g~~~~~~~~~~~~~i~~v~q~~~l~~----~ltv~e~ 94 (251)
+++.+|++++|+||||||||||+|+|+|+.+|+.|+|.+ +|+.+.......+..++|++|.|.+.. .+|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 677899999999999999999999999999999999999 887765432222223799999997755 6899 88
Q ss_pred HH--HHH-H-h------cC-CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHH
Q psy7367 95 MW--FYS-Q-L------KQ-VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRK 140 (251)
Q Consensus 95 l~--~~~-~-~------~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqr 140 (251)
+. |.. . + ++ ....+...++.++++.++|.+...+....|+.|++||
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 83 321 1 1 11 1111223468899999999876656667777888773
No 148
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.57 E-value=5.7e-20 Score=153.06 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=87.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC-------------CCeeEEEEcceeCCC-ChHHhhcceEEEccCCCCCCCCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLP-------------VSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLT 90 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~-------------p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~lt 90 (251)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++.. ....+++.+ +|+..++. .+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~-~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEH-AE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEE-EE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEee-ee
Confidence 5799999999999999999999999875 56665 35554422 223333332 34443322 23
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHH----HHHHHH-HHccCCCEEEEeCCCCCCCH
Q psy7367 91 VEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQR----KLSVAM-AFIGGSRTVILDEPTSGVDP 165 (251)
Q Consensus 91 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kq----rv~ia~-al~~~p~llllDEPt~gLD~ 165 (251)
+.+|+ ++.+.. .+.++++.-.. ...+..+ .|-++ ++ .|+ +++.+|++++|||||+++|.
T Consensus 76 ~~~n~------~g~~~~----~i~~~~~~~~~-~~~~~~~----~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 76 FSGNL------YGTSKE----AVRAVQAMNRI-CVLDVDL----QGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp ETTEE------EEEEHH----HHHHHHHTTCE-EEEECCH----HHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred ecCcc------CCCCHH----HHHHHHHcCCc-EEEECCH----HHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 33333 122222 23333332110 0000000 11111 11 455 78888899999999999999
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEeCCHHHHHhhcCEEEEeeC
Q psy7367 166 YSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA 206 (251)
Q Consensus 166 ~~~~~l~~~l~~l~~g~tiii~tHd~~~~~~~~d~i~~l~~ 206 (251)
.+.+.+.+.|....++ +.++|. . ..+|+|+++++
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~~--~--~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSKE--P--GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGGS--T--TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH---HHHhhc--c--CCceEEEECCC
Confidence 9988898888776433 233451 1 56899888764
No 149
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.53 E-value=1.2e-14 Score=128.16 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=98.1
Q ss_pred EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCC
Q psy7367 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYN 83 (251)
Q Consensus 4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~ 83 (251)
+++++.|+. .. ++++|+ +|++++++|+||+||||+++.|++++.+..|+|.+.+.++......
T Consensus 80 ~~l~~~~~~-~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~------------ 142 (295)
T 1ls1_A 80 EALKEALGG-EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR------------ 142 (295)
T ss_dssp HHHHHHTTS-SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH------------
T ss_pred HHHHHHHCC-CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH------------
Confidence 345566743 32 788888 9999999999999999999999999999999999988876432110
Q ss_pred CCCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC-CCC
Q psy7367 84 ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP-TSG 162 (251)
Q Consensus 84 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP-t~g 162 (251)
+.+. .+.+..++....... ..+..+.+|.+++.+...+++++|+||| +++
T Consensus 143 ---------~ql~------------------~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~ 193 (295)
T 1ls1_A 143 ---------EQLR------------------LLGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQ 193 (295)
T ss_dssp ---------HHHH------------------HHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSS
T ss_pred ---------HHHH------------------HhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcc
Confidence 0000 012233544321100 1233345788999998899999999999 999
Q ss_pred CCHHHHHHHHHHHHhhhCCCeEEEEe
Q psy7367 163 VDPYSRRSIWELLIKYKKGRTVILTT 188 (251)
Q Consensus 163 LD~~~~~~l~~~l~~l~~g~tiii~t 188 (251)
+|......+.++........+++++.
T Consensus 194 ~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 194 IDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred ccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 99998988888877765555555443
No 150
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.52 E-value=6.4e-16 Score=127.68 Aligned_cols=126 Identities=10% Similarity=0.018 Sum_probs=77.3
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-HHhhcceEEEccCCCCCCCCCHHHHHHHHH
Q psy7367 21 NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-TTIRRSLGVCPQYNALFDKLTVEEHMWFYS 99 (251)
Q Consensus 21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~ 99 (251)
|+++++|++++|+||||||||||+++|+|+++ .+.+.+..+.... ...+..++|+||++.+|+.+++.+++.+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57888999999999999999999999999964 5777776664322 223567999999988887777776654433
Q ss_pred HhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC
Q psy7367 100 QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159 (251)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP 159 (251)
.+.+.......+.+.++++. +.....+ +..+-+.-++....+|.+++++.|
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~-g~~vi~d--------~~~~~~~~~~~~~~~~~~v~~~~~ 127 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKA-GRDVLLE--------IDWQGARQIRELFPPALSIFILPP 127 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHT-TCEEEEE--------CCHHHHHHHHHHCTTCEEEEEECS
T ss_pred eeecccccchHHHHHHHHHc-CCeEEEE--------ECHHHHHHHHHhCCCcEEEEEECc
Confidence 22211110011234444443 2111111 234444555566677888888877
No 151
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.51 E-value=1.6e-15 Score=128.42 Aligned_cols=172 Identities=15% Similarity=0.087 Sum_probs=92.5
Q ss_pred cceeeee-eEEEeCCcEEEEEcCCCCcHHHHHH-HHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCH
Q psy7367 14 KLAVNGL-NVNFYEDQITSFLGHNGAGKTTTIS-MLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTV 91 (251)
Q Consensus 14 ~~il~~i-sl~i~~Ge~~~liG~NGaGKSTLlk-~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv 91 (251)
.+.|+.+ .--+++|++++|.||||||||||+. ++.+..++..+.+++...............+++.+|+......+++
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~ 88 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAM 88 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEE
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEE
Confidence 4567776 6789999999999999999999954 5555554444455554433211111112234444432110001111
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCC--CHHH
Q psy7367 92 EEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI--GGSRTVILDEPTSGV--DPYS 167 (251)
Q Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~--~~p~llllDEPt~gL--D~~~ 167 (251)
.+. ... .++.....+.....-+....+....++.++ .+|+++++|+|++.+ |+..
T Consensus 89 ~~~----------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~ 147 (247)
T 2dr3_A 89 VDA----------FTA-----------GIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAM 147 (247)
T ss_dssp EEC----------STT-----------TTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGG
T ss_pred Eec----------chh-----------hcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHH
Confidence 000 000 000000000011111112223233333333 589999999999988 6644
Q ss_pred HHHHHHHHHhh-h-CCCeEEEEeCCHHH--------HHhhcCEEEEeeC
Q psy7367 168 RRSIWELLIKY-K-KGRTVILTTHYMDE--------ADLLGDRIAIIAA 206 (251)
Q Consensus 168 ~~~l~~~l~~l-~-~g~tiii~tHd~~~--------~~~~~d~i~~l~~ 206 (251)
...++..+.++ + .|+|||+++|.... ++..||.++.|+.
T Consensus 148 ~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 148 ARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 55555555554 3 48999999998776 5678999999974
No 152
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.50 E-value=5.4e-17 Score=135.61 Aligned_cols=140 Identities=16% Similarity=0.138 Sum_probs=82.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHH
Q psy7367 24 FYEDQITSFLGHNGAGKTTTISMLMGMLPV---SSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ 100 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~ 100 (251)
.++|++++|+||||||||||+++|+|+++| +.|.|.++|..+.... ...++..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~---~~~~~~~~~------------------- 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL---LEPRGLLPR------------------- 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHH---HGGGTCGGG-------------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHH---HHHhccccc-------------------
Confidence 578999999999999999999999999985 4677777665542110 011111100
Q ss_pred hcCCChHHHHHHHHHHHHHc----CCC-cccCCCCCcCChhHHHHHHHH-HHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy7367 101 LKQVPKDLAQLEISNMIVDL----GIP-HKRTSLANTLSGGMQRKLSVA-MAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174 (251)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~----~l~-~~~~~~~~~LSgG~kqrv~ia-~al~~~p~llllDEPt~gLD~~~~~~l~~~ 174 (251)
.+.+.......+.+++..+ .+. +..+ ....+|+||+||+++| ++++.++.++++|||.. ..
T Consensus 77 -~~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~ 143 (208)
T 3c8u_A 77 -KGAPETFDFEGFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RD 143 (208)
T ss_dssp -TTSGGGBCHHHHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GG
T ss_pred -CCCCchhhHHHHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HH
Confidence 0000000001111222222 111 1122 2345799999999998 88888888888888841 11
Q ss_pred HHhhhCCCeEEEEeCCHHH-HHhhcCE
Q psy7367 175 LIKYKKGRTVILTTHYMDE-ADLLGDR 200 (251)
Q Consensus 175 l~~l~~g~tiii~tHd~~~-~~~~~d~ 200 (251)
+.+. --.+++++++.+. +.+++.|
T Consensus 144 l~~~--~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 144 LTAI--WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GGGT--CSEEEEECCCHHHHHHHHHHH
T ss_pred HHHh--cCEEEEEeCCHHHHHHHHHHH
Confidence 1111 2367888888876 5666666
No 153
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.49 E-value=4.8e-19 Score=150.23 Aligned_cols=184 Identities=11% Similarity=-0.026 Sum_probs=76.6
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh-CCCCCCeeEEEEcceeCCCCh--HHhhcceEEEccCCCCCCCCC
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM-GMLPVSSGTAKIYNHDIRTDM--TTIRRSLGVCPQYNALFDKLT 90 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~-Gl~~p~~G~i~~~g~~~~~~~--~~~~~~i~~v~q~~~l~~~lt 90 (251)
.+..+++||++++|++++|+||||||||||+++|+ |++++. +.+.+..... ......++|.|+++..|..++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 88 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLC 88 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhh
Confidence 35689999999999999999999999999999999 998652 2232221100 001123456666554444333
Q ss_pred HHHHHHHH----HHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHH-HHH-HHHccCCCEEEEeCCCCCCC
Q psy7367 91 VEEHMWFY----SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKL-SVA-MAFIGGSRTVILDEPTSGVD 164 (251)
Q Consensus 91 v~e~l~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv-~ia-~al~~~p~llllDEPt~gLD 164 (251)
+.+++... ...++.+.. .++++++.-. .-..+-.+. -....++++ .-+ ..++..|+..+++|++.+.|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~-~vild~~~~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~ 162 (231)
T 3lnc_A 89 SNGEIIEHAEVFGNFYGVPRK----NLEDNVDKGV-STLLVIDWQ-GAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRR 162 (231)
T ss_dssp HTTCEEEEEEETTEEEEEECT----THHHHHHHTC-EEEEECCHH-HHHHHHHHSGGGEEEEEEECSCHHHHHHC-----
T ss_pred hcCceehhhhhccccCCCCHH----HHHHHHHcCC-eEEEEcCHH-HHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcC
Confidence 33332211 111121111 1333333311 111110000 011113332 111 23456777888889999998
Q ss_pred HHHHHHHHHHHHhh----h--CCCeEEEEeCCHHHHHhhcCEEEEeeCCE
Q psy7367 165 PYSRRSIWELLIKY----K--KGRTVILTTHYMDEADLLGDRIAIIAAGK 208 (251)
Q Consensus 165 ~~~~~~l~~~l~~l----~--~g~tiii~tHd~~~~~~~~d~i~~l~~G~ 208 (251)
..+.+.+.+.+... . ....+++++|+++++.+-+++++-...++
T Consensus 163 ~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~ 212 (231)
T 3lnc_A 163 ADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMK 212 (231)
T ss_dssp ---------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred CCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence 88877777666542 1 24678888888888776666554433344
No 154
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.48 E-value=2.2e-14 Score=127.26 Aligned_cols=99 Identities=22% Similarity=0.201 Sum_probs=77.4
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHH
Q psy7367 19 GLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFY 98 (251)
Q Consensus 19 ~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~ 98 (251)
.++++.++|++++|+|||||||||+++.|++.+++..|+|.+.+.|..... ..+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~---------------------a~eq---- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA---------------------AIEQ---- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH---------------------HHHH----
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH---------------------HHHH----
Confidence 456677899999999999999999999999999998899998877653210 0111
Q ss_pred HHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHH---HHHHHHccCCCEEEEeCCCC
Q psy7367 99 SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKL---SVAMAFIGGSRTVILDEPTS 161 (251)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv---~ia~al~~~p~llllDEPt~ 161 (251)
+..+++.+++.. +..+|+|+.|++ ++++|+..+|+++|+|||..
T Consensus 151 --------------L~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 151 --------------LKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp --------------HHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred --------------HHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 223445556643 346789999999 89999999999999999975
No 155
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.47 E-value=1e-13 Score=122.32 Aligned_cols=139 Identities=17% Similarity=0.238 Sum_probs=94.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV 104 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~ 104 (251)
.+|++++++|||||||||+++.|++.+.+++| +++.++.+++. ..++.|++..+...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-----------------~~V~lv~~D~~---r~~a~eqL~~~~~~--- 159 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-----------------KKIAFITTDTY---RIAAVEQLKTYAEL--- 159 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-----------------CCEEEEECCCS---STTHHHHHHHHHTT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----------------CEEEEEecCcc---cchHHHHHHHHHHh---
Confidence 47999999999999999999999999988777 23556655542 23556666543322
Q ss_pred ChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh---C-
Q psy7367 105 PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK---K- 180 (251)
Q Consensus 105 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~---~- 180 (251)
+++..... .+ ...-+.++++ +.+|+++|+| |+|+|+.....+.++..-+. .
T Consensus 160 ---------------~gl~~~~~-----~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~ 214 (296)
T 2px0_A 160 ---------------LQAPLEVC-----YT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSI 214 (296)
T ss_dssp ---------------TTCCCCBC-----SS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTE
T ss_pred ---------------cCCCeEec-----CC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCC
Confidence 23321111 12 2333555554 4999999999 89999877666655544433 2
Q ss_pred CCeEEE-EeCCHHHHHhhcCEEEEeeCCEEEe
Q psy7367 181 GRTVIL-TTHYMDEADLLGDRIAIIAAGKLQC 211 (251)
Q Consensus 181 g~tiii-~tHd~~~~~~~~d~i~~l~~G~i~~ 211 (251)
+.++++ +||..+.+.++|+++..+..+.++.
T Consensus 215 ~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 215 QSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp EEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred eEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 344555 5999999999999877777777765
No 156
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.42 E-value=4.6e-15 Score=139.72 Aligned_cols=174 Identities=12% Similarity=0.095 Sum_probs=110.0
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCeeEEEEcceeCCCC-hHHhhcceEEEccCCCCCCCCCHHHHH
Q psy7367 19 GLNVNFYEDQITSFLGHNGAGKTTTISMLMG--MLPVSSGTAKIYNHDIRTD-MTTIRRSLGVCPQYNALFDKLTVEEHM 95 (251)
Q Consensus 19 ~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G--l~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~l~~~ltv~e~l 95 (251)
.+++++.++..+.|.|++||||||++++|.. +.+++.|++.+.+.|.+.. ...+ .. + |.+.. +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~-~~---l---Phl~~--~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVY-EG---I---PHLLT--EVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGG-TT---C---TTBSS--SCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhh-cc---C---Ccccc--eeecCH
Confidence 5788899999999999999999999999876 6677778888877776431 1111 11 0 11110 111222
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHcCCCcccC---CCCCcCChhHHHHH----------HHHHHHccCCC-EEEEeCCCC
Q psy7367 96 WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRT---SLANTLSGGMQRKL----------SVAMAFIGGSR-TVILDEPTS 161 (251)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~LSgG~kqrv----------~ia~al~~~p~-llllDEPt~ 161 (251)
............+++++. +++..+|+.+... +....+|+||+|+. .+|+++...|. ++++||+++
T Consensus 230 ~~a~~~L~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ 308 (512)
T 2ius_A 230 KDAANALRWCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFAD 308 (512)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHH
Confidence 111111111134455554 7788888875432 22346899988753 35667778898 899999999
Q ss_pred CCCHHHHHHHHHHHHhh----hC-CCeEEEEeCCHH-------HHHhhcCEEEE
Q psy7367 162 GVDPYSRRSIWELLIKY----KK-GRTVILTTHYMD-------EADLLGDRIAI 203 (251)
Q Consensus 162 gLD~~~~~~l~~~l~~l----~~-g~tiii~tHd~~-------~~~~~~d~i~~ 203 (251)
.+|.. ...+.+.+.++ +. |.++|++||++. ....+.+||.+
T Consensus 309 ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 309 LMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 88833 33444554443 33 899999999987 44566677765
No 157
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.42 E-value=3.7e-18 Score=148.69 Aligned_cols=135 Identities=10% Similarity=0.040 Sum_probs=93.6
Q ss_pred eEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEccCC
Q psy7367 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYN 83 (251)
Q Consensus 5 ~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~ 83 (251)
++.+.|+ ...+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++.. .....++.++++||..
T Consensus 54 ~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 128 (278)
T 1iy2_A 54 EIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETA 128 (278)
T ss_dssp HHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444553 356889999999999 89999999999999999999875 7899998876521 1112334577888875
Q ss_pred C-CCCCCCHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 84 A-LFDKLTVEEHMWFYSQLKQV----PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 84 ~-l~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
. ..+.+++.|++......... ...+..+.+..+ +.+|||||+||+.+++|+.++|++ +|+
T Consensus 129 ~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~lsgg~~~~~~i~~a~t~~p~~--ld~ 193 (278)
T 1iy2_A 129 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATNRPDI--LDP 193 (278)
T ss_dssp HTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH-------------HHHHTTCCTTCCEEEEEEESCTTS--SCH
T ss_pred HhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH-------------HHHHhCCCCCCCEEEEEecCCchh--CCH
Confidence 3 56667888888543321110 111222223332 346899999999999999999987 566
Q ss_pred C
Q psy7367 159 P 159 (251)
Q Consensus 159 P 159 (251)
+
T Consensus 194 ~ 194 (278)
T 1iy2_A 194 A 194 (278)
T ss_dssp H
T ss_pred h
Confidence 5
No 158
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.41 E-value=4.1e-14 Score=132.38 Aligned_cols=60 Identities=23% Similarity=0.210 Sum_probs=52.9
Q ss_pred EEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC
Q psy7367 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR 66 (251)
Q Consensus 3 i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~ 66 (251)
+.+++... ..+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.++|+++.
T Consensus 9 l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 9 FRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred eeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 34555432 4589999999999 999999999999999999999999999999999998874
No 159
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.40 E-value=4.4e-13 Score=120.88 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=85.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhc
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK 102 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~ 102 (251)
-+++|+++.|.||||||||||+..++.......|.+.|-..+..... ...+.+|+-+++..++.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~-~~a~~lG~~~~~l~i~~--------------- 120 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDP-EYAKKLGVDTDSLLVSQ--------------- 120 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH-HHHHHTTCCGGGCEEEC---------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCH-HHHHHcCCCHHHeEEec---------------
Confidence 58899999999999999999988877544333333333221111110 11111222111111000
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccC--CCEEEEeCCCCCC----------CH---HH
Q psy7367 103 QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGG--SRTVILDEPTSGV----------DP---YS 167 (251)
Q Consensus 103 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~--p~llllDEPt~gL----------D~---~~ 167 (251)
..+. .|-+.++++++.+ |+++++|||++.+ |+ ..
T Consensus 121 -----------------------------~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q 169 (349)
T 2zr9_A 121 -----------------------------PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQ 169 (349)
T ss_dssp -----------------------------CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHH
T ss_pred -----------------------------CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHH
Confidence 1111 2334577777654 9999999999998 33 12
Q ss_pred HHHHHHHHHhh----hC-CCeEEEEeCCHH----------------HHHhhcCEEEEeeCCEEEeecC
Q psy7367 168 RRSIWELLIKY----KK-GRTVILTTHYMD----------------EADLLGDRIAIIAAGKLQCCGS 214 (251)
Q Consensus 168 ~~~l~~~l~~l----~~-g~tiii~tHd~~----------------~~~~~~d~i~~l~~G~i~~~g~ 214 (251)
.+.+.+.++++ ++ ++|||+++|... .+..+||.++.++.++....|+
T Consensus 170 ~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 170 ARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 22344444443 33 899999999643 2567899999998877665543
No 160
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.39 E-value=1.6e-13 Score=127.63 Aligned_cols=180 Identities=8% Similarity=0.041 Sum_probs=116.0
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEEEcceeCCCChHHhhcce-EEEccCCCCCCCCCH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG-TAKIYNHDIRTDMTTIRRSL-GVCPQYNALFDKLTV 91 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i-~~v~q~~~l~~~ltv 91 (251)
...|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+... ..+..++ +... ....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~--~~l~~r~~~~~~-------~~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA--QQLVMRMLCAEG-------NINA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH--HHHHHHHHHHHH-------TCCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHHc-------CCCH
Confidence 4578888888999999999999999999999999987665445 56665544321 1121111 1000 0011
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH----
Q psy7367 92 EEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI--GGSRTVILDEPTSGVDP---- 165 (251)
Q Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~--~~p~llllDEPt~gLD~---- 165 (251)
+.+. ...... ....++.++++.++..+..-.....+|.++.+ +.++.++ .+|+++++|+|+...++
T Consensus 261 -~~l~----~g~l~~-~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~ 332 (454)
T 2r6a_A 261 -QNLR----TGKLTP-EDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSK 332 (454)
T ss_dssp -HHHH----TSCCCH-HHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC--
T ss_pred -HHHh----cCCCCH-HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCC
Confidence 1110 011222 22345556666665444433345689999886 5566665 68999999999987743
Q ss_pred ----HHHHHHHHHHHhhh-C-CCeEEEEeC---------C--HH--------HHHhhcCEEEEeeCCEEE
Q psy7367 166 ----YSRRSIWELLIKYK-K-GRTVILTTH---------Y--MD--------EADLLGDRIAIIAAGKLQ 210 (251)
Q Consensus 166 ----~~~~~l~~~l~~l~-~-g~tiii~tH---------d--~~--------~~~~~~d~i~~l~~G~i~ 210 (251)
.....+.+.|+.+. + +++||+++| + +. .++..||.|++|+.++..
T Consensus 333 ~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~ 402 (454)
T 2r6a_A 333 ENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYY 402 (454)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccccc
Confidence 33456666777764 3 999999999 3 22 577889999999877653
No 161
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.39 E-value=1.2e-17 Score=143.26 Aligned_cols=151 Identities=11% Similarity=0.051 Sum_probs=101.4
Q ss_pred eEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-ChHHhhcceEEEccCC
Q psy7367 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYN 83 (251)
Q Consensus 5 ~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~ 83 (251)
++.+.|+ ...+++++++++++| ++|+||||||||||+++|++... .|.+.+++.++.. .....++.++++||..
T Consensus 30 ~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 104 (254)
T 1ixz_A 30 EIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETA 104 (254)
T ss_dssp HHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444553 356899999999999 99999999999999999999875 7899998876521 1112234577888875
Q ss_pred C-CCCCCCHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 84 A-LFDKLTVEEHMWFYSQLKQV----PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 84 ~-l~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
. ..+.+++.|++......... ...+..+.+..+ ..+|||||+||+.+++|+.++|++ +|+
T Consensus 105 ~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l-------------l~~l~g~~~~~~~i~~a~t~~p~~--ld~ 169 (254)
T 1ixz_A 105 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------------LVEMDGFEKDTAIVVMAATNRPDI--LDP 169 (254)
T ss_dssp TTSSSEEEEEETHHHHHC---------CHHHHHHHHHH-------------HHHHHTCCTTCCEEEEEEESCGGG--SCG
T ss_pred HhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHH-------------HHHHhCCCCCCCEEEEEccCCchh--CCH
Confidence 3 45667778888543322111 112222223333 346889999999999999999987 677
Q ss_pred CCC------------CCCHHHHHHHHHHH
Q psy7367 159 PTS------------GVDPYSRRSIWELL 175 (251)
Q Consensus 159 Pt~------------gLD~~~~~~l~~~l 175 (251)
+.. -.|...+..+++..
T Consensus 170 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 170 ALLRPGRFDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp GGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence 643 23566666665533
No 162
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.31 E-value=1.9e-14 Score=122.44 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=43.7
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC-C--------hHHhhcceEEEccC
Q psy7367 21 NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-D--------MTTIRRSLGVCPQY 82 (251)
Q Consensus 21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~-~--------~~~~~~~i~~v~q~ 82 (251)
+++|.+ ++++|+|||||||||||++|+|++.|++|+|.++|.++.. . ....+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 566777 8999999999999999999999999999999999988721 1 11235689999974
No 163
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.29 E-value=2e-14 Score=138.20 Aligned_cols=157 Identities=11% Similarity=0.128 Sum_probs=102.3
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCe-eEEEEcceeCCCChHHhhcceEEEccCC---------
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSS-GTAKIYNHDIRTDMTTIRRSLGVCPQYN--------- 83 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~i~~v~q~~--------- 83 (251)
..+++++++.+.+|+.+.|+||||+|||||+++|+++.++.. |.+.+++.+... ....++++|+..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~----~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE----NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT----TSCEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc----cCCcEEEEecchHHHHHHHHH
Confidence 568999999999999999999999999999999999998887 888888766532 234578887653
Q ss_pred -------------CCCCCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHcc
Q psy7367 84 -------------ALFDKLTVEEHMWFYSQ-LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG 149 (251)
Q Consensus 84 -------------~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~ 149 (251)
..+..+++.+|+..... ..+.+. .........+.+|.-.......+.+|+|++|++..++....
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~--v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~a 200 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPF--IDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHRA 200 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCE--EECTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHHT
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCE--EEcCCCCHHhcCceEEechhhcCCccccccccccCceeeec
Confidence 11222222222211000 000000 00000011122332222222346799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q psy7367 150 GSRTVILDEPTSGVDPYSRRSIWELLIK 177 (251)
Q Consensus 150 ~p~llllDEPt~gLD~~~~~~l~~~l~~ 177 (251)
++.+|++||... |++..+..+++.|.+
T Consensus 201 ~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 201 HKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp TTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999988 899999999999975
No 164
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.26 E-value=3.2e-13 Score=110.68 Aligned_cols=134 Identities=14% Similarity=0.194 Sum_probs=74.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC-----------CeeEEEEcceeCCC---ChHHhhcceEEEccCCC-------CCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGMLPV-----------SSGTAKIYNHDIRT---DMTTIRRSLGVCPQYNA-------LFD 87 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~---~~~~~~~~i~~v~q~~~-------l~~ 87 (251)
.++|+|+||||||||++.++|...| ++|+|.++|+++.. ......+..+++++... .++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 58999999876421 00000111122222110 011
Q ss_pred CC--CHHHHHHHHHH-hcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q psy7367 88 KL--TVEEHMWFYSQ-LKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164 (251)
Q Consensus 88 ~l--tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD 164 (251)
.. ...+++..... +..... ....+..++..+++. .-..+.+.+|++++.+|+++++| ||++|
T Consensus 111 ~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~-----------~~~~~~~~~a~~l~~~~~~~~ld--~Sald 175 (191)
T 1oix_A 111 IAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLR-----------HLRAVPTDEARAFAEKNGLSFIE--TSALD 175 (191)
T ss_dssp TTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGG-----------GGCCSCHHHHHHHHHHTTCEEEE--CCTTT
T ss_pred CcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccc-----------cccccCHHHHHHHHHHcCCEEEE--EeCCC
Confidence 00 01122211100 000000 000000011111111 11123467899999999999999 99999
Q ss_pred HHHHHHHHHHHHh
Q psy7367 165 PYSRRSIWELLIK 177 (251)
Q Consensus 165 ~~~~~~l~~~l~~ 177 (251)
..+...+++.|.+
T Consensus 176 ~~~v~~l~~~l~~ 188 (191)
T 1oix_A 176 STNVEAAFQTILT 188 (191)
T ss_dssp CTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998865
No 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.17 E-value=3.8e-13 Score=110.65 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=31.9
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367 141 LSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178 (251)
Q Consensus 141 v~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l 178 (251)
...|++++.+|++.++| ||++|+.+...+++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999999999988653
No 166
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.14 E-value=3.5e-12 Score=115.59 Aligned_cols=137 Identities=13% Similarity=0.163 Sum_probs=86.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-----------CCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHH---
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGMLP-----------VSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEH--- 94 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~~-----------p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~--- 94 (251)
+++|+|++|||||||++.|+|... |+.|.+.++|.++. +....|++.+.+. ..+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~-----l~DT~G~i~~lp~----~lve~f~~t 251 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM-----LVDTVGFIRGIPP----QIVDAFFVT 251 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE-----EEECCCBCSSCCG----GGHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE-----EEeCCCchhcCCH----HHHHHHHHH
Confidence 399999999999999999999876 67789999886541 1123444443221 112111
Q ss_pred HHHHHH------hcCC--Ch---HHHHHHHHHHHHHcCCCccc----CCCCCcCChhHHHHHHHH----HHH-ccCCCEE
Q psy7367 95 MWFYSQ------LKQV--PK---DLAQLEISNMIVDLGIPHKR----TSLANTLSGGMQRKLSVA----MAF-IGGSRTV 154 (251)
Q Consensus 95 l~~~~~------~~~~--~~---~~~~~~~~~~l~~~~l~~~~----~~~~~~LSgG~kqrv~ia----~al-~~~p~ll 154 (251)
+..... .... +. ......+.++++.+++.+.. ..++..+|++++|++.++ +++ ..+|++
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 110000 0111 11 12223456778887765432 345777898998988877 555 444454
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhh
Q psy7367 155 ILDEPTSGVDPYSRRSIWELLIKY 178 (251)
Q Consensus 155 llDEPt~gLD~~~~~~l~~~l~~l 178 (251)
+|+|++|..+...+++.|.+.
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHH
Confidence 899999999999999998775
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.13 E-value=2.8e-12 Score=106.08 Aligned_cols=78 Identities=12% Similarity=-0.031 Sum_probs=51.2
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHH
Q psy7367 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHM 95 (251)
Q Consensus 16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l 95 (251)
++.+-.++.++|++++|+||||||||||+++|++.+ |.+.+++.++.......+..+++++|++..++.+++.+++
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 444445677899999999999999999999999976 8999999887532222233568888876555555555555
Q ss_pred HH
Q psy7367 96 WF 97 (251)
Q Consensus 96 ~~ 97 (251)
..
T Consensus 94 ~~ 95 (200)
T 4eun_A 94 MD 95 (200)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 168
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=99.11 E-value=7.5e-11 Score=106.46 Aligned_cols=147 Identities=14% Similarity=0.095 Sum_probs=91.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE-EEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHh
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA-KIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL 101 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~ 101 (251)
-+++|+++.|.||||||||||+..++....+..|.+ ++++..... ..+.+++++.+|+..+....++.+.+....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~--~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~-- 132 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD--PVYAKNLGVDLKSLLISQPDHGEQALEIVD-- 132 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC--HHHHHHHTCCGGGCEEECCSSHHHHHHHHH--
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc--hHHHHHcCCchhhhhhhhccCHHHHHHHHH--
Confidence 589999999999999999999999999877777766 555554322 123456777777766555566665553321
Q ss_pred cCCChHHHHHHHHHHHHHcCC-----CcccCCCC-CcCCh--hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7367 102 KQVPKDLAQLEISNMIVDLGI-----PHKRTSLA-NTLSG--GMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173 (251)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~l-----~~~~~~~~-~~LSg--G~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~ 173 (251)
.+++.... +......+ .++++ |++|++..||++. +++.
T Consensus 133 -------------~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la---------------------~~L~ 178 (356)
T 3hr8_A 133 -------------ELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMS---------------------QALR 178 (356)
T ss_dssp -------------HHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHH---------------------HHHH
T ss_pred -------------HHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHH---------------------HHHH
Confidence 11111111 11111111 23333 5555556666554 4556
Q ss_pred HHHhh-hC-CCeEEEEeCC----------------HHHHHhhcCEEEEeeCC
Q psy7367 174 LLIKY-KK-GRTVILTTHY----------------MDEADLLGDRIAIIAAG 207 (251)
Q Consensus 174 ~l~~l-~~-g~tiii~tHd----------------~~~~~~~~d~i~~l~~G 207 (251)
.|..+ ++ +.+||++.|- -..++.++|.++.++..
T Consensus 179 ~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~ 230 (356)
T 3hr8_A 179 KIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRG 230 (356)
T ss_dssp HHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEec
Confidence 66665 33 8999999887 23366788999999853
No 169
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.10 E-value=1.2e-13 Score=125.74 Aligned_cols=138 Identities=15% Similarity=0.113 Sum_probs=86.1
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCC-CCCCCCHHH
Q psy7367 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNA-LFDKLTVEE 93 (251)
Q Consensus 15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~-l~~~ltv~e 93 (251)
.+++++++++++|++++|+||||||||||+++|+|. .+|.+..-. .... .....++++||... ++++.+...
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~~--~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPLD--RLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCTT--THHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccch--hHHHHHHHhcchhHHHHHHHHHHH
Confidence 588999999999999999999999999999999985 467776511 1111 11223667777653 233333222
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHH---HcCCC-------------cccCCCCCcCChhHHHHHHHHHHHccCCCEEE-E
Q psy7367 94 HMWFYSQLKQVPKDLAQLEISNMIV---DLGIP-------------HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVI-L 156 (251)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~---~~~l~-------------~~~~~~~~~LSgG~kqrv~ia~al~~~p~lll-l 156 (251)
.+ ...+...........+...++ .+.+. ...+.....+++|++||+..+.+++..|++++ |
T Consensus 230 ~~--~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyL 307 (377)
T 1svm_A 230 GE--SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCL 307 (377)
T ss_dssp TT--TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHH
T ss_pred HH--HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEE
Confidence 11 000000000000112333333 11111 23455677899999999999888899999988 9
Q ss_pred eCCCC
Q psy7367 157 DEPTS 161 (251)
Q Consensus 157 DEPt~ 161 (251)
|+|+.
T Consensus 308 d~~~~ 312 (377)
T 1svm_A 308 ERSEF 312 (377)
T ss_dssp HTCTH
T ss_pred eCCHH
Confidence 99987
No 170
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.00 E-value=3.5e-11 Score=103.35 Aligned_cols=66 Identities=23% Similarity=0.186 Sum_probs=52.3
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh---CCCCCCeeEEE--------EcceeCCC--ChHHhhcceEEEcc
Q psy7367 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM---GMLPVSSGTAK--------IYNHDIRT--DMTTIRRSLGVCPQ 81 (251)
Q Consensus 15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~---Gl~~p~~G~i~--------~~g~~~~~--~~~~~~~~i~~v~q 81 (251)
.++++.+ ++|++++|+|||||||||++++|+ |+..|++|.++ .+|.++.. ....+++.+++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3455544 789999999999999999999999 99999999999 88888743 34566788999997
Q ss_pred CC
Q psy7367 82 YN 83 (251)
Q Consensus 82 ~~ 83 (251)
..
T Consensus 95 ~~ 96 (252)
T 4e22_A 95 SQ 96 (252)
T ss_dssp EE
T ss_pred cC
Confidence 53
No 171
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.99 E-value=9.5e-12 Score=118.35 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=38.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEE-EcceeC
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG-TAK-IYNHDI 65 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G-~i~-~~g~~~ 65 (251)
.+++|++++|+|+||||||||+++|+|.+.|++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999987 785 887654
No 172
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.98 E-value=2.2e-10 Score=92.71 Aligned_cols=148 Identities=17% Similarity=0.191 Sum_probs=88.0
Q ss_pred EEEeEEEEeCCCccee--eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcce--eC-CCCh----HHh
Q psy7367 2 AIQNLSKRFPNGKLAV--NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH--DI-RTDM----TTI 72 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il--~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~--~~-~~~~----~~~ 72 (251)
.++.|... +...+ +++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++ .... ...
T Consensus 3 ~i~~l~i~---nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 78 (182)
T 3kta_A 3 YIEKLELK---GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAK 78 (182)
T ss_dssp EEEEEEEE---SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCS
T ss_pred eEEEEEEe---CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCc
Confidence 45566554 13457 8899999999 99999999999999999999998887664322221 11 1100 012
Q ss_pred hcceEEEccCCCC-C-C---CCCHHHHHHHH----HHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHH
Q psy7367 73 RRSLGVCPQYNAL-F-D---KLTVEEHMWFY----SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSV 143 (251)
Q Consensus 73 ~~~i~~v~q~~~l-~-~---~ltv~e~l~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~i 143 (251)
+..|.++||++.- + + .+++...+.-. ..+.+.. ...+.+.++++.+++.+.. +.-++.|+.+++.
T Consensus 79 ~~~v~~~f~~~~~~~~~~~~~~~i~r~~~~~~~~~~~i~g~~--~~~~~~~~~l~~~~l~~~~---~~~~~qg~~~~l~- 152 (182)
T 3kta_A 79 YAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRR--ATRSEILDILTAAMISPDG---YNIVLQGDITKFI- 152 (182)
T ss_dssp CEEEEEEEECTTCCSSSSSSEEEEEEEECTTSCEEEEETTEE--ECHHHHHHHHHHTTCCTTC---TTEECTTCTTHHH-
T ss_pred eEEEEEEEeCCCcccccCCcEEEEEEEEEeCCcEEEEECCeE--cCHHHHHHHHHHcCCCCCC---CEEEEcccHHHHH-
Confidence 4578999997632 1 1 12222111000 0011111 1134677889999987532 2457777777764
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh
Q psy7367 144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177 (251)
Q Consensus 144 a~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~ 177 (251)
-++|..++.+++.+..
T Consensus 153 ------------------~~~~~~r~~~ld~~~g 168 (182)
T 3kta_A 153 ------------------KMSPLERRLLIDDISG 168 (182)
T ss_dssp ------------------HSCHHHHHHHHHHHHT
T ss_pred ------------------hCCHHHHHHHHHHHHC
Confidence 2356777777766643
No 173
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.97 E-value=1.1e-10 Score=104.11 Aligned_cols=80 Identities=14% Similarity=0.054 Sum_probs=62.2
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCCh-----HHh-----hcceEEE-ccCCCC
Q psy7367 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM-----TTI-----RRSLGVC-PQYNAL 85 (251)
Q Consensus 17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~-----~~~i~~v-~q~~~l 85 (251)
+++++|++++|++++|+|+||+||||++..|++.+.+..|+|.+.+.|+.... ..+ +..+.++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 37899999999999999999999999999999999999999999988875422 223 4678999 676554
Q ss_pred CCCCCHHHHHH
Q psy7367 86 FDKLTVEEHMW 96 (251)
Q Consensus 86 ~~~ltv~e~l~ 96 (251)
.+..++++++.
T Consensus 175 ~p~~~~~~~l~ 185 (320)
T 1zu4_A 175 DPASVVFDAIK 185 (320)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 44434444443
No 174
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.97 E-value=3.7e-11 Score=103.50 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=36.3
Q ss_pred CEEEeE-EEEeCCCcceeeeeeEEEeC---CcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 1 MAIQNL-SKRFPNGKLAVNGLNVNFYE---DQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 1 l~i~~l-~~~y~~~~~il~~isl~i~~---Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
++++|+ +++|+++..+|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 18 l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 18 LETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899 99993347899999999999 9999999999999999999999855
No 175
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.96 E-value=5.2e-11 Score=98.44 Aligned_cols=127 Identities=16% Similarity=0.226 Sum_probs=77.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCChHH
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDL 108 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~~~~ 108 (251)
+++|+|||||||||+.++|+++ |...++..+ +.+.+. + +. .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~-------~~~~~~---~-----~~-----------------~-- 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV-------VAREVV---A-----KD-----------------S-- 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH-------HHHHTT---C-----SS-----------------C--
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH-------HHHHHc---c-----CC-----------------h--
Confidence 6899999999999999999994 444554322 111110 0 00 0
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEe
Q psy7367 109 AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTT 188 (251)
Q Consensus 109 ~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~t 188 (251)
..+.++.+.+|.... .|.|+.+|..++..+..+|+.+..+ .+.++|..+..+.+.+... .+.+||+.+
T Consensus 45 --~~~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~ 112 (206)
T 1jjv_A 45 --PLLSKIVEHFGAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVV 112 (206)
T ss_dssp --HHHHHHHHHHCTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEEC
T ss_pred --HHHHHHHHHhCHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEe
Confidence 123344555554322 3678888999988888877644332 3456677777776666544 355889999
Q ss_pred CCHHHH--HhhcCEEEEeeC
Q psy7367 189 HYMDEA--DLLGDRIAIIAA 206 (251)
Q Consensus 189 Hd~~~~--~~~~d~i~~l~~ 206 (251)
|.+.+. ...||++++++.
T Consensus 113 ~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 113 PLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp TTTTTTTCGGGCSEEEEEEC
T ss_pred chhhhcCcHhhCCEEEEEEC
Confidence 988776 678999998854
No 176
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.95 E-value=6.5e-10 Score=100.08 Aligned_cols=126 Identities=13% Similarity=0.097 Sum_probs=84.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 105 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 105 (251)
..-.++++|+||+|||||++.++|.. +..| +.+... ....++.+.+... .
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~-----~~~~~t----~~~~~~~~~~~~~---------------~----- 215 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK-PEIA-----SYPFTT----RGINVGQFEDGYF---------------R----- 215 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC-CEEE-----CCTTCS----SCEEEEEEEETTE---------------E-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccC-----CCCCee----eceeEEEEEecCc---------------e-----
Confidence 44589999999999999999999965 3211 111111 0112333333210 0
Q ss_pred hHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHHhhhCCCeE
Q psy7367 106 KDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD-EPTSGVDPYSRRSIWELLIKYKKGRTV 184 (251)
Q Consensus 106 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllD-EPt~gLD~~~~~~l~~~l~~l~~g~ti 184 (251)
+..++.....+.++.++|++++|++. +.+...++-++++| +|++++|......+++.+.+...+..+
T Consensus 216 -----------~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~pi 283 (357)
T 2e87_A 216 -----------YQIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPF 283 (357)
T ss_dssp -----------EEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCE
T ss_pred -----------EEEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCE
Confidence 11122223334567789999998876 66666788889999 999999999988888888776447788
Q ss_pred EEEe--CCHHH
Q psy7367 185 ILTT--HYMDE 193 (251)
Q Consensus 185 ii~t--Hd~~~ 193 (251)
|++. ||+..
T Consensus 284 ilV~NK~Dl~~ 294 (357)
T 2e87_A 284 LVVINKIDVAD 294 (357)
T ss_dssp EEEECCTTTCC
T ss_pred EEEEECcccCC
Confidence 8888 88743
No 177
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.95 E-value=7.3e-10 Score=109.35 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=61.1
Q ss_pred CCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHhhh-CCCeEEEE-eCCHHHHHhhcCE
Q psy7367 127 TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS-GVDPYSRRSIWELLIKYK-KGRTVILT-THYMDEADLLGDR 200 (251)
Q Consensus 127 ~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~-gLD~~~~~~l~~~l~~l~-~g~tiii~-tHd~~~~~~~~d~ 200 (251)
+..+..+|.|+.+|..++.+++.+++++|+|||.. +||......+++.+.... ...+|+++ ||+.+.+..+++.
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 44577899999999999999999999999999996 999887777776666554 35677774 9999888888764
No 178
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.94 E-value=7.2e-12 Score=117.88 Aligned_cols=129 Identities=12% Similarity=0.050 Sum_probs=89.6
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCC-hHHhhcceEEEccCCC-CCCCCCH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTTIRRSLGVCPQYNA-LFDKLTV 91 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~-l~~~ltv 91 (251)
..+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.++... .....+.+..+||... ..+.+.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 45788999999999 99999999999999999999874 78899998876431 1122344667787753 3455566
Q ss_pred HHHHHHHHHhcC----CChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q psy7367 92 EEHMWFYSQLKQ----VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS 161 (251)
Q Consensus 92 ~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~ 161 (251)
.|++......+. ....+..+.+..++. +||||++|+..+++|..++|++ ||||..
T Consensus 129 IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 666643221111 112233333444443 4788999999999999999987 898865
No 179
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.94 E-value=2.8e-10 Score=93.57 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=40.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEEEcceeCCCChHHhhcceEEEccCCC
Q psy7367 22 VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG-TAKIYNHDIRTDMTTIRRSLGVCPQYNA 84 (251)
Q Consensus 22 l~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~v~q~~~ 84 (251)
+++++|++++|+|||||||||++++|++++.|+.| .+.. ............++|+||++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISM---TTRQMREGEVDGVDYFFKTRD 61 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCE---ECSCCCTTCCBTTTBEECCHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEeccc---ccCCCCCCccCCCceEEcCHH
Confidence 46889999999999999999999999999977766 3321 111111111234778887654
No 180
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.90 E-value=2.9e-09 Score=99.62 Aligned_cols=114 Identities=19% Similarity=0.220 Sum_probs=75.6
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHH
Q psy7367 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEH 94 (251)
Q Consensus 15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~ 94 (251)
..++++++.+++| +.|+||+|+|||||+|++++.... .+.++.- ..+.. +
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~---------------------~f~~is~-~~~~~-~----- 88 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV---------------------PFFHISG-SDFVE-L----- 88 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC---------------------CEEEEEG-GGTTT-C-----
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC---------------------CeeeCCH-HHHHH-H-----
Confidence 3566777888887 789999999999999999983210 0111100 00000 0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCC----------CCCCC
Q psy7367 95 MWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP----------TSGVD 164 (251)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEP----------t~gLD 164 (251)
.++ ++++++|..+++|....|.+|++||+ ++|.|
T Consensus 89 ----------------------------------~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~ 132 (476)
T 2ce7_A 89 ----------------------------------FVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGH 132 (476)
T ss_dssp ----------------------------------CTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------
T ss_pred ----------------------------------Hhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCc
Confidence 000 15678888899999999999999999 34677
Q ss_pred HHHHHHHHHHHHhhh-----CCCeEEEEeCCHHHH
Q psy7367 165 PYSRRSIWELLIKYK-----KGRTVILTTHYMDEA 194 (251)
Q Consensus 165 ~~~~~~l~~~l~~l~-----~g~tiii~tHd~~~~ 194 (251)
+.....+.+++..+. .+..||.+||..+.+
T Consensus 133 ~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 133 DEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 777777777776652 378899999998654
No 181
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.87 E-value=5.5e-11 Score=98.22 Aligned_cols=61 Identities=20% Similarity=0.166 Sum_probs=47.2
Q ss_pred EeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE--EEcceeCC
Q psy7367 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA--KIYNHDIR 66 (251)
Q Consensus 4 ~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i--~~~g~~~~ 66 (251)
+|+++.++ ...+.+..++..++|++++|+|||||||||++++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHEC-SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------C-CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCccccc-ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 57777775 4678889999999999999999999999999999999887 67888 88876653
No 182
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.85 E-value=4.4e-10 Score=91.75 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~ 59 (251)
|++++|+||||||||||+++|+|++++..|.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~ 33 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSV 33 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEe
Confidence 678999999999999999999999976555443
No 183
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.75 E-value=9.5e-09 Score=91.99 Aligned_cols=49 Identities=12% Similarity=0.012 Sum_probs=38.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh----CCCeEEEEeCCHHHHHhhc
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK----KGRTVILTTHYMDEADLLG 198 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~----~g~tiii~tHd~~~~~~~~ 198 (251)
.+|.++++||+... |+.....+..++.++. .+.++|++||+.+....+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 56889999999876 9888888888887653 4789999999986554443
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.75 E-value=5.6e-11 Score=107.09 Aligned_cols=172 Identities=15% Similarity=0.169 Sum_probs=87.7
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCeeEEEEcceeCCCC-hHHhhcceEEEccCCCC-CCCC
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG--MLPVSSGTAKIYNHDIRTD-MTTIRRSLGVCPQYNAL-FDKL 89 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G--l~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~l-~~~l 89 (251)
..+|++++++++ .++|+|++|||||||++.|+| ++++.+|.++.....+... ........+..++.+.. +.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 358999999999 899999999999999999999 6677777665443322100 00001233444433211 1111
Q ss_pred -CHHHHHHHHHH-h----cCCChHHHHHHH----HHHHHHcCCCcccCC-CCCcCChhHHHHHHHHHHHccCCCEEEEeC
Q psy7367 90 -TVEEHMWFYSQ-L----KQVPKDLAQLEI----SNMIVDLGIPHKRTS-LANTLSGGMQRKLSVAMAFIGGSRTVILDE 158 (251)
Q Consensus 90 -tv~e~l~~~~~-~----~~~~~~~~~~~~----~~~l~~~~l~~~~~~-~~~~LSgG~kqrv~ia~al~~~p~llllDE 158 (251)
.+.+.+.-... . .+.+.....-.+ ..-+..+++....+. ...+.+..++|+..++++.+.+|+++|+.-
T Consensus 101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv 180 (360)
T 3t34_A 101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180 (360)
T ss_dssp HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEe
Confidence 11111111000 0 000000000000 000111122221111 123467888999999999999999888885
Q ss_pred CCCCCCHHHHHHHHHHHHhhh-CC-CeEEEEeC
Q psy7367 159 PTSGVDPYSRRSIWELLIKYK-KG-RTVILTTH 189 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l~-~g-~tiii~tH 189 (251)
..+..|... ...+++++++. .| .+|+++|.
T Consensus 181 ~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 181 SPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp EETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred ecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 444455443 44566777764 34 57777775
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.75 E-value=2.9e-09 Score=103.42 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=83.7
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEEcceeCCC-ChHHhhcceEEEccCCCCCCCCCHHHHHHH
Q psy7367 21 NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV--SSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWF 97 (251)
Q Consensus 21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~ 97 (251)
|++++++..++|+|+||||||||++.|++...+ ..|+| .+|..+.. ...+.++.+++.+|...++.. ++..|+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nl-- 78 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFL-- 78 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEE--
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEE--
Confidence 567889999999999999999999999976654 67888 66766643 334556778888877655432 211111
Q ss_pred HHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCC-cCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy7367 98 YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLAN-TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176 (251)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~~l~ 176 (251)
.|.+.. .++ .......-..++-++++| |+.|+++..+. +++.+.
T Consensus 79 ----------------------------iDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~~~~~~ 123 (665)
T 2dy1_A 79 ----------------------------LDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER-AWTVAE 123 (665)
T ss_dssp ----------------------------EECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-HHHHHH
T ss_pred ----------------------------EeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH-HHHHHH
Confidence 111000 010 112222235678899999 99999988763 333332
Q ss_pred hhhCCCeEEEEeCCHHH
Q psy7367 177 KYKKGRTVILTTHYMDE 193 (251)
Q Consensus 177 ~l~~g~tiii~tHd~~~ 193 (251)
. .+.++|++.|.++.
T Consensus 124 ~--~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 124 R--LGLPRMVVVTKLDK 138 (665)
T ss_dssp H--TTCCEEEEEECGGG
T ss_pred H--ccCCEEEEecCCch
Confidence 2 47888899998875
No 186
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.72 E-value=4.7e-10 Score=90.17 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=33.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR 66 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~ 66 (251)
.+|++++|+|||||||||++++|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999865 78889887664
No 187
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.68 E-value=2.2e-08 Score=89.70 Aligned_cols=107 Identities=9% Similarity=0.148 Sum_probs=68.9
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE 93 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 93 (251)
...|+.+.--+.+|+++.|.|++|+|||||+.-++....... ..+.|+.- .++..+
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g------------------~~Vl~fSl------Ems~~q 88 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD------------------RGVAVFSL------EMSAEQ 88 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT------------------CEEEEEES------SSCHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC------------------CeEEEEeC------CCCHHH
Confidence 346777766899999999999999999999988875432211 12334321 244433
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q psy7367 94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162 (251)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~g 162 (251)
... ++......+++.... -+.||.++++|+..|...+.+++++|.|+|...
T Consensus 89 l~~---------------Rlls~~~~v~~~~l~---~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s 139 (338)
T 4a1f_A 89 LAL---------------RALSDLTSINMHDLE---SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR 139 (338)
T ss_dssp HHH---------------HHHHHHHCCCHHHHH---HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC
T ss_pred HHH---------------HHHHHhhCCCHHHHh---cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc
Confidence 321 111111111211121 147899999999999999999999999998654
No 188
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.64 E-value=1e-07 Score=88.03 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=72.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP 105 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~~~ 105 (251)
++.+++++|||||||||++..|++.+.+..++|.+-+-++... ...+.+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~---------------------~a~eqL~~~------- 147 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP---------------------AAYDQLLQL------- 147 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH---------------------HHHHHHHHH-------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch---------------------hHHHHHHHH-------
Confidence 5789999999999999999999999888778887765553210 112222222
Q ss_pred hHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCC-CC--CCHHHHHHHHHHHHhhhC-C
Q psy7367 106 KDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT-SG--VDPYSRRSIWELLIKYKK-G 181 (251)
Q Consensus 106 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt-~g--LD~~~~~~l~~~l~~l~~-g 181 (251)
.+..++...... ...+.-.--+-+++.+...+++++|+|+|. .+ .|+....++.++.+.... .
T Consensus 148 -----------~~~~gv~~~~~~--~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~ 214 (433)
T 3kl4_A 148 -----------GNQIGVQVYGEP--NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDD 214 (433)
T ss_dssp -----------HHTTTCCEECCT--TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSE
T ss_pred -----------HHhcCCceeecc--ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcc
Confidence 122222211100 001111111234555555688888888876 34 777777777776665543 4
Q ss_pred CeEEEEeCC
Q psy7367 182 RTVILTTHY 190 (251)
Q Consensus 182 ~tiii~tHd 190 (251)
..+++.+|.
T Consensus 215 vlLVlDa~~ 223 (433)
T 3kl4_A 215 VILVIDASI 223 (433)
T ss_dssp EEEEEEGGG
T ss_pred eEEEEeCcc
Confidence 455555543
No 189
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.63 E-value=9.1e-09 Score=83.50 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=31.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEEc
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLPV-SSGTAKIY 61 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-~~G~i~~~ 61 (251)
.+|++++|+||||||||||+++|+++.++ ..|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence 36899999999999999999999998864 55666543
No 190
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.58 E-value=7.8e-09 Score=92.94 Aligned_cols=42 Identities=24% Similarity=0.182 Sum_probs=36.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR 66 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~ 66 (251)
+++.+++|+|++|||||||++.|+|.+.|..|+|.+.+.++.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 357899999999999999999999998888888888776653
No 191
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.58 E-value=1.3e-08 Score=85.89 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=36.9
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeC
Q psy7367 20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI 65 (251)
Q Consensus 20 isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 65 (251)
-+.+.++|++++|.|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 3456689999999999999999999999998 68899988764
No 192
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=2.8e-08 Score=81.75 Aligned_cols=38 Identities=26% Similarity=0.163 Sum_probs=24.7
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
..+++|+||++++|++++|+||+||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 56999999999999999999999999999999999765
No 193
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.55 E-value=1.1e-08 Score=84.47 Aligned_cols=43 Identities=19% Similarity=0.136 Sum_probs=38.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeC
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI 65 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 65 (251)
..++|++++|+|+||||||||+++|++++++..|.|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 4678999999999999999999999999988889998876664
No 194
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.54 E-value=5.7e-11 Score=105.94 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=40.8
Q ss_pred cceeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEc
Q psy7367 14 KLAVNGLNVNFYEDQI--TSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~--~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~ 61 (251)
..+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+.+.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 5688999999999999 99999999999999999999876665544443
No 195
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.48 E-value=6.4e-09 Score=86.74 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=45.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC---CCCeeEEEE--------cceeCCC--ChHHhhcceEEEccCC
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGML---PVSSGTAKI--------YNHDIRT--DMTTIRRSLGVCPQYN 83 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl~---~p~~G~i~~--------~g~~~~~--~~~~~~~~i~~v~q~~ 83 (251)
+.+++|+||+||||||+.++|++.+ .++.|.+.. .|.++.. ....+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999998765 788899887 6766542 2234567899998864
No 196
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.48 E-value=1e-08 Score=91.32 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=41.9
Q ss_pred EEEeCCCcceeeeeeEEEeCCc------EEEEEcCCCCcHHHHHHHHhCCCC--CCeeEEEE
Q psy7367 7 SKRFPNGKLAVNGLNVNFYEDQ------ITSFLGHNGAGKTTTISMLMGMLP--VSSGTAKI 60 (251)
Q Consensus 7 ~~~y~~~~~il~~isl~i~~Ge------~~~liG~NGaGKSTLlk~l~Gl~~--p~~G~i~~ 60 (251)
++.|+ +..+|++++..+.+++ ++||+||||||||||+++|++++. |++|.+.+
T Consensus 67 ~~~~~-~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 67 SFYVT-ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHH-HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHhhc-chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 33453 3567888888888877 999999999999999999999987 45565443
No 197
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.47 E-value=7.3e-08 Score=79.95 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=30.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEE
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLPV-SSGTAKI 60 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p-~~G~i~~ 60 (251)
++|++++|+||||||||||++.|++.++| ..+.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~ 42 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISM 42 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEec
Confidence 58999999999999999999999999887 4444433
No 198
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.46 E-value=8.3e-09 Score=90.84 Aligned_cols=150 Identities=15% Similarity=0.122 Sum_probs=81.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCC---CC--CCCCHHHHHHHHHH
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNA---LF--DKLTVEEHMWFYSQ 100 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~---l~--~~ltv~e~l~~~~~ 100 (251)
++.+++|+|++|||||||++.|.|... .+....... ...+..++++++.. ++ |..-....-.+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~------~i~s~~~~t---Tr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~ 77 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKI------SITSRKAQT---TRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRL 77 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSE------EECCCCSSC---CSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCc------cccCCCCCc---ceeeEEEEEEECCeeEEEEECcCCCccchhhHHHH
Confidence 345899999999999999999999631 111111111 11234566665431 11 11110000000000
Q ss_pred hcCCChHHHHHHHHHHHHHcCCCcc-cCCCCCcCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHHHHHH
Q psy7367 101 LKQVPKDLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFI--GGSRTVILDEPTSGVDPYS-RRSIWELLI 176 (251)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~kqrv~ia~al~--~~p~llllDEPt~gLD~~~-~~~l~~~l~ 176 (251)
+. ..+...++..++--+ .+. ..+|.|++ .+++++. ..|.++++ +.+|... +..+.+.+.
T Consensus 78 ~~--------~~~~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~ 140 (301)
T 1ega_A 78 MN--------KAASSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQ 140 (301)
T ss_dssp HT--------CCTTSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHH
T ss_pred HH--------HHHHHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHH
Confidence 00 001111222222111 221 23888886 4566665 78999998 7899876 677778888
Q ss_pred hhhC--CC--eEEEEeCCHHHHHhhcCEE
Q psy7367 177 KYKK--GR--TVILTTHYMDEADLLGDRI 201 (251)
Q Consensus 177 ~l~~--g~--tiii~tHd~~~~~~~~d~i 201 (251)
++.+ +. .+.+++|+.+-+..++|.+
T Consensus 141 ~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 141 FLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp HHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred HHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 7743 43 6677788877666666654
No 199
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.44 E-value=5.2e-08 Score=80.86 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=26.9
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 21 NVNFYEDQITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
|+...+|++++|+||||||||||++.|++..+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45556899999999999999999999999875
No 200
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.43 E-value=2e-07 Score=82.70 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=25.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-+++|+++.|.||+|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999888763
No 201
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.42 E-value=8.3e-08 Score=85.95 Aligned_cols=28 Identities=25% Similarity=0.159 Sum_probs=25.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999988874
No 202
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.41 E-value=6.2e-08 Score=86.21 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=25.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLPV 53 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p 53 (251)
..+..+.|.||+|+|||||++.+++...+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999987654
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.40 E-value=2.5e-09 Score=95.81 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=50.2
Q ss_pred EEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCC
Q psy7367 6 LSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR 66 (251)
Q Consensus 6 l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~ 66 (251)
+.+.|+ ...+++++++.+.+|.+++|+|+||||||||++.|++.+.+..|+|.+-+.+..
T Consensus 36 ~~~~~~-~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 36 PRHQAL-STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHH-HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred chhhhH-HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 334443 246889999999999999999999999999999999999888888888776653
No 204
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.39 E-value=2e-07 Score=76.77 Aligned_cols=33 Identities=30% Similarity=0.243 Sum_probs=29.1
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 20 isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
+--++++|.+++|+|++||||||++++|++.++
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 344678899999999999999999999999864
No 205
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.34 E-value=5.3e-07 Score=83.33 Aligned_cols=67 Identities=7% Similarity=0.178 Sum_probs=44.7
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHhhh-CCCeEEEEeCCH-HHHHhhcCEEEE-eeCCEEEeecCH
Q psy7367 149 GGSRTVILDEPTSGVDP-YSRRSIWELLIKYK-KGRTVILTTHYM-DEADLLGDRIAI-IAAGKLQCCGSS 215 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~-~~~~~l~~~l~~l~-~g~tiii~tHd~-~~~~~~~d~i~~-l~~G~i~~~g~~ 215 (251)
.+|++|++||+..-.+. ..+..++..+..+. .|..||++||+. ..+..+.+++.- +..|.++...++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 48999999999876654 67888999998875 588999999973 322222222222 345655554443
No 206
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.33 E-value=8.5e-07 Score=78.36 Aligned_cols=131 Identities=12% Similarity=0.134 Sum_probs=81.2
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE 93 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 93 (251)
...|+.+.--+++|+++.|.|++|+|||||+..++.-..- . | ..+.|+.- .++..+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~------g-----------~~vl~~sl------E~s~~~ 110 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-N------D-----------DVVNLHSL------EMGKKE 110 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-T------T-----------CEEEEEES------SSCHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-c------C-----------CeEEEEEC------CCCHHH
Confidence 4467777767999999999999999999998887742110 0 0 12444432 245444
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q psy7367 94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173 (251)
Q Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~gLD~~~~~~l~~ 173 (251)
...= +......+++....+.. ..||.++++|+..|...+.++++++.|+|... ...+..
T Consensus 111 l~~R---------------~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~ 169 (315)
T 3bh0_A 111 NIKR---------------LIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWS 169 (315)
T ss_dssp HHHH---------------HHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHH
T ss_pred HHHH---------------HHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHH
Confidence 3321 11111111211222111 23899999999999999999999999998643 334555
Q ss_pred HHHhhh-C-CCe--EEEEeC
Q psy7367 174 LLIKYK-K-GRT--VILTTH 189 (251)
Q Consensus 174 ~l~~l~-~-g~t--iii~tH 189 (251)
.++++. + +.. +|++-|
T Consensus 170 ~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 170 KTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHhcCCCCeEEEEeC
Confidence 555552 3 666 887755
No 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.32 E-value=1.3e-06 Score=75.72 Aligned_cols=71 Identities=14% Similarity=0.001 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCH----------HHHHHHHHHHHhhh-----CCCeEEEEeCCHHH----HH
Q psy7367 135 GGMQRKLSVAMAFIGGSRTVILDEPTSGVDP----------YSRRSIWELLIKYK-----KGRTVILTTHYMDE----AD 195 (251)
Q Consensus 135 gG~kqrv~ia~al~~~p~llllDEPt~gLD~----------~~~~~l~~~l~~l~-----~g~tiii~tHd~~~----~~ 195 (251)
++++.+..++.+...+|.+|++||+.+.++. .....++..+.... .+..||.+|++.+. +.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 5666777788888889999999999776553 23334455554432 13567788887532 22
Q ss_pred hhcCEEEEee
Q psy7367 196 LLGDRIAIIA 205 (251)
Q Consensus 196 ~~~d~i~~l~ 205 (251)
+-+++.+.+.
T Consensus 178 ~R~~~~i~~~ 187 (297)
T 3b9p_A 178 RRFTKRVYVS 187 (297)
T ss_dssp HHCCEEEECC
T ss_pred hhCCeEEEeC
Confidence 3456655543
No 208
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.30 E-value=4.9e-06 Score=69.95 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=30.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhC---CCeEEEEeC
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKK---GRTVILTTH 189 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~---g~tiii~tH 189 (251)
..|+++|+..+.+.++......+..++..+.. ..++|+.||
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999888888776666665554421 358888888
No 209
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.28 E-value=9.3e-07 Score=69.76 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=31.9
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
.++.|...- ..-+++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 2 ~i~~l~i~n---f~~~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 2 KLERVTVKN---FRSHSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEEEES---BTTBSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEEeC---cccCcceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 455555531 11245667777765 999999999999999999873
No 210
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.26 E-value=7.8e-06 Score=75.26 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=47.8
Q ss_pred EEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC
Q psy7367 6 LSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT 67 (251)
Q Consensus 6 l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~ 67 (251)
+++.|+. .. ++++|+ ++++++++|+|||||||++..|++.+.+..|+|.+.+.|+..
T Consensus 82 L~~~~~~-~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 82 LKEALGG-EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp HHHHTTS-SC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred HHHHhCC-Cc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 4455643 22 678888 899999999999999999999999999999999998888754
No 211
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.26 E-value=1.2e-07 Score=89.95 Aligned_cols=50 Identities=22% Similarity=0.198 Sum_probs=43.4
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~ 64 (251)
..++.++++++ +|++++|+||||+|||||+++|++...+..|.|.+.|..
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 34678888888 899999999999999999999999999999999887743
No 212
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.25 E-value=8.4e-07 Score=87.93 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=29.5
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy7367 21 NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV 53 (251)
Q Consensus 21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p 53 (251)
+|.+++|+.+.|+||||||||||+++|++.+.+
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 346889999999999999999999999998754
No 213
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.25 E-value=3.3e-07 Score=72.95 Aligned_cols=33 Identities=27% Similarity=0.235 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcc
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g 62 (251)
.|++++|+|||||||||++++|++.+.+ +++++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 45553
No 214
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.20 E-value=5.4e-06 Score=74.65 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=24.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-+++|+++.|.||+|+|||||...++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999998877753
No 215
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.16 E-value=1e-06 Score=81.24 Aligned_cols=159 Identities=11% Similarity=0.066 Sum_probs=81.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC------------CCeeEEEEcceeCCC-ChHHhhcceEEEccCCCCCCCCCHHHHH
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGMLP------------VSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHM 95 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~~------------p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~e~l 95 (251)
.++|+|+||||||||++.|+|... |.+|.+.++|+++.- .....++..++.+|....|..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999864 678999999986521 1111233344555655555555555555
Q ss_pred HHHHH------h-cCCChHHHHHHHHHHHHHcCCCcc--cCCCCCcCChhH--HHH--HHHHHHHc--cCCCEEEEeCCC
Q psy7367 96 WFYSQ------L-KQVPKDLAQLEISNMIVDLGIPHK--RTSLANTLSGGM--QRK--LSVAMAFI--GGSRTVILDEPT 160 (251)
Q Consensus 96 ~~~~~------~-~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~LSgG~--kqr--v~ia~al~--~~p~llllDEPt 160 (251)
...-. . .+.... ..++.+.+...+..-. .+ +..-+..-+ ... -.+++.+. ...+++ ++
T Consensus 262 ~~ad~vllv~d~~~~~~~~--~~~i~~~l~~~~~~~ilv~N-K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 334 (439)
T 1mky_A 262 EKADVVVIVLDATQGITRQ--DQRMAGLMERRGRASVVVFN-KWDLVVHREKRYDEFTKLFREKLYFIDYSPLI----FT 334 (439)
T ss_dssp HHCSEEEEEEETTTCCCHH--HHHHHHHHHHTTCEEEEEEE-CGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE----EC
T ss_pred hhCCEEEEEEeCCCCCCHH--HHHHHHHHHHcCCCEEEEEE-CccCCCchhhHHHHHHHHHHHHhccCCCCcEE----EE
Confidence 44210 0 122222 2345566666553211 11 111111111 111 13444443 344444 48
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHH
Q psy7367 161 SGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEA 194 (251)
Q Consensus 161 ~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~ 194 (251)
|+++-.....+++.+.+.....+.-+.|+.++.+
T Consensus 335 SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~ 368 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYASYTTKVPSSAINSA 368 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 9999999999988887642211122356655443
No 216
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.15 E-value=1e-06 Score=76.63 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=33.1
Q ss_pred ceeeeeeEEEeCC-----------cEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q psy7367 15 LAVNGLNVNFYED-----------QITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58 (251)
Q Consensus 15 ~il~~isl~i~~G-----------e~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i 58 (251)
.+++.+...+..+ ..+.|.||+|+||||+.++|++...+..+.+
T Consensus 24 ~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 24 EAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp HHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 4555555555443 5899999999999999999999876655543
No 217
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.14 E-value=3.5e-07 Score=83.18 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=45.4
Q ss_pred EEEeEEEEeCCCcceee--------------eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 2 AIQNLSKRFPNGKLAVN--------------GLNVNFYEDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~--------------~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++|+++.|+..+..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 135 ~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 135 LFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 46789999986677899 899999999999999999999999999999865
No 218
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.13 E-value=4.7e-07 Score=72.81 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=32.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee--EEEEcceeC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSG--TAKIYNHDI 65 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G--~i~~~g~~~ 65 (251)
.+|++++|+|++||||||++++|++.++| .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47899999999999999999999998765 46 566665443
No 219
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.12 E-value=1.1e-05 Score=70.79 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=43.5
Q ss_pred ee-eeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCC
Q psy7367 18 NG-LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT 67 (251)
Q Consensus 18 ~~-isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~ 67 (251)
++ ++++.+ |++++++|+||+||||++..|++.+.+..++|.+.+.++..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 56 888876 99999999999999999999999998888999998877654
No 220
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.09 E-value=9.8e-06 Score=70.81 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=27.0
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 22 VNFYEDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 22 l~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
+.+.++..+.|.||+|+|||||++++++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456889999999999999999999999865
No 221
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.09 E-value=7.8e-07 Score=72.68 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=31.7
Q ss_pred EEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 7 SKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 7 ~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
+++|++-..+++++|++.++.. ++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 4456554578999999988885 68999999999999999987
No 222
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.08 E-value=9.3e-07 Score=74.64 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=32.7
Q ss_pred eeeeeeEEEe---CCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEc
Q psy7367 16 AVNGLNVNFY---EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61 (251)
Q Consensus 16 il~~isl~i~---~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~ 61 (251)
-|.++|+++. +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 5788888887 9999999999999999999999998887 6666544
No 223
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.06 E-value=4.5e-06 Score=69.07 Aligned_cols=43 Identities=26% Similarity=0.573 Sum_probs=31.9
Q ss_pred CEEEeEEEE-eCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q psy7367 1 MAIQNLSKR-FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM 48 (251)
Q Consensus 1 l~i~~l~~~-y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~ 48 (251)
+.++.|... |+ -+.+.++++.+| +.+|+|||||||||++.+|.
T Consensus 1 M~i~~l~i~nf~----~~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 1 MKLERVTVKNFR----SHSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CEEEEEEEESBT----TBSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEEEECCc----CccceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 345666654 32 244567777775 99999999999999999885
No 224
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=98.05 E-value=2.1e-05 Score=72.53 Aligned_cols=176 Identities=11% Similarity=0.048 Sum_probs=93.1
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee-EEEEcceeCCCChHHhhcceEEEccCCCCC-CCCCH
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG-TAKIYNHDIRTDMTTIRRSLGVCPQYNALF-DKLTV 91 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~-~~ltv 91 (251)
...|+.+.--+++|+++.|.|++|+|||||+..++.......| .|.+..-+. +...+..++- .+...+. ..+.
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~--~~~~l~~R~~--~~~~~i~~~~l~- 261 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM--PAAQLTLRMM--CSEARIDMNRVR- 261 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS--CHHHHHHHHH--HHHTTCCTTTCC-
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC--CHHHHHHHHH--HHHcCCCHHHHh-
Confidence 3456666656999999999999999999998888764432222 333322211 1111111100 0000000 0000
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH----
Q psy7367 92 EEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI--GGSRTVILDEPTSGVDP---- 165 (251)
Q Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~--~~p~llllDEPt~gLD~---- 165 (251)
. ..+... ...++..+++.+.-.+..-.....+|..+. .+.++.+. .+|+++++|..+.-...
T Consensus 262 -~--------g~l~~~-~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~ 329 (444)
T 2q6t_A 262 -L--------GQLTDR-DFSRLVDVASRLSEAPIYIDDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGK 329 (444)
T ss_dssp -G--------GGCCHH-HHHHHHHHHHHHHTSCEEEECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC----
T ss_pred -C--------CCCCHH-HHHHHHHHHHHHhcCCEEEECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCC
Confidence 0 011111 122344444444222222112345666554 44555554 58999999998764432
Q ss_pred --H----HHHHHHHHHHhhh-C-CCeEEEEeCCHH-------------------HHHhhcCEEEEeeC
Q psy7367 166 --Y----SRRSIWELLIKYK-K-GRTVILTTHYMD-------------------EADLLGDRIAIIAA 206 (251)
Q Consensus 166 --~----~~~~l~~~l~~l~-~-g~tiii~tHd~~-------------------~~~~~~d~i~~l~~ 206 (251)
. ....+...|+.+. + +++||+++|--. .++..||.|++|..
T Consensus 330 ~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 330 SGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 1 1234555566653 3 899999998211 35678999999863
No 225
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=5.4e-08 Score=86.12 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=33.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHH
Q psy7367 150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMD 192 (251)
Q Consensus 150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~ 192 (251)
++.++++|| ...|++..+..+.+.+.+......+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 677999999 788999999999999888765556667776654
No 226
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.98 E-value=9.9e-07 Score=73.01 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=37.3
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCee--EEEEccee
Q psy7367 22 VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG--TAKIYNHD 64 (251)
Q Consensus 22 l~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G--~i~~~g~~ 64 (251)
+.+++|.+++|+|++||||||+.+.|++.+.|..| .+.+++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 55788999999999999999999999999887888 77777543
No 227
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.97 E-value=3.4e-07 Score=77.19 Aligned_cols=145 Identities=14% Similarity=0.064 Sum_probs=77.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeCCCChHHhhcceEEEccCCCCCCCCCHHHHHHHHHHhcC
Q psy7367 24 FYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ 103 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e~l~~~~~~~~ 103 (251)
+.+|+.+.+.||+||||||++.++..-.....| ....+.++++.|......++.+++.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~---------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~- 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQND---------------RAAECNIVVTQPRRISAVSVAERVAFERGEE- 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT---------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCC-
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC---------------CCCceEEEEeccchHHHHHHHHHHHHHhccc-
Confidence 457999999999999999998876421100000 0124566776665444445555554321100
Q ss_pred CChHHHHHHHHHHHHHcC----CCccc---CCCCCcCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHH
Q psy7367 104 VPKDLAQLEISNMIVDLG----IPHKR---TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS-GVDPYSRRSIWELL 175 (251)
Q Consensus 104 ~~~~~~~~~~~~~l~~~~----l~~~~---~~~~~~LSgG~kqrv~ia~al~~~p~llllDEPt~-gLD~~~~~~l~~~l 175 (251)
.. ..+| ..... +..+--.+.|+..+.. ...+.+.+++++||.-. ++|.......++.+
T Consensus 137 ~~------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i 202 (235)
T 3llm_A 137 PG------------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDV 202 (235)
T ss_dssp TT------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred cC------------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHH
Confidence 00 0001 00110 1112234556655553 34689999999999976 67777664444444
Q ss_pred HhhhCC-CeEEE-EeCCHHHHHhhc
Q psy7367 176 IKYKKG-RTVIL-TTHYMDEADLLG 198 (251)
Q Consensus 176 ~~l~~g-~tiii-~tHd~~~~~~~~ 198 (251)
.....+ .++++ +|.+.+.+.++.
T Consensus 203 ~~~~~~~~~il~SAT~~~~~~~~~~ 227 (235)
T 3llm_A 203 VQAYPEVRIVLMSATIDTSMFCEYF 227 (235)
T ss_dssp HHHCTTSEEEEEECSSCCHHHHHHT
T ss_pred HhhCCCCeEEEEecCCCHHHHHHHc
Confidence 443222 33433 355555555444
No 228
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.96 E-value=6.4e-07 Score=80.73 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=35.4
Q ss_pred EEEeEEEEeCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcc
Q psy7367 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62 (251)
Q Consensus 2 ~i~~l~~~y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g 62 (251)
.+.|+++.|+ ++.++++++|+| +|+|+||+|||||++.|.|...+..+.+...+
T Consensus 19 ~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 19 GFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp --CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred EeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 3556666664 367889999887 99999999999999999988666555544333
No 229
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.93 E-value=9.3e-06 Score=64.65 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999965
No 230
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.91 E-value=8.6e-06 Score=65.85 Aligned_cols=34 Identities=32% Similarity=0.340 Sum_probs=20.6
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
.++++++++.++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4789999998887 679999999999999999997
No 231
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.89 E-value=9.8e-07 Score=75.96 Aligned_cols=47 Identities=11% Similarity=0.088 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHHHHHhhcCEEEEee
Q psy7367 159 PTSGVDPYSRRSIWELLIKY-KK-GRTVILTTHYMDEADLLGDRIAIIA 205 (251)
Q Consensus 159 Pt~gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~~~~~~~d~i~~l~ 205 (251)
|||+.+..+...+++.+.+. .. ..+..+.+|..+.+++.++++...-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~ 192 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISELL 192 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999876 33 4556778899888888888765443
No 232
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.87 E-value=2.7e-05 Score=68.33 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=30.6
Q ss_pred cCCCEEEEeCCCC-CCCHHHHHHHHHHHHhh-hCCCeEEEEeC
Q psy7367 149 GGSRTVILDEPTS-GVDPYSRRSIWELLIKY-KKGRTVILTTH 189 (251)
Q Consensus 149 ~~p~llllDEPt~-gLD~~~~~~l~~~l~~l-~~g~tiii~tH 189 (251)
.+|++|++||+.. .-+...+..++..+..+ ..+..+|++++
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 5699999999855 34557888899988876 45666666665
No 233
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.86 E-value=1.5e-05 Score=64.88 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
..+.|.||+|+|||||+++++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999997543
No 234
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.84 E-value=6.7e-06 Score=68.06 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.+..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998654
No 235
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.80 E-value=9.7e-06 Score=65.55 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=26.6
Q ss_pred eeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 19 GLNVNFYEDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 19 ~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999875
No 236
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.80 E-value=3.9e-05 Score=62.78 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=34.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDE 193 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~ 193 (251)
.+|.++++||.-. +|+.....+...+.+...+..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 4678999999765 7888888888777665557888999987653
No 237
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.79 E-value=4.7e-06 Score=67.27 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=32.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE
Q psy7367 22 VNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59 (251)
Q Consensus 22 l~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~ 59 (251)
+...+|.+++|+|++||||||+.+.|+..+.+..+.+.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 34457999999999999999999999998877666664
No 238
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.77 E-value=3.2e-05 Score=60.86 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999654
No 239
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.76 E-value=2.3e-05 Score=70.55 Aligned_cols=42 Identities=19% Similarity=0.483 Sum_probs=32.9
Q ss_pred EEEeEEEE-eCCCcceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q psy7367 2 AIQNLSKR-FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLM 48 (251)
Q Consensus 2 ~i~~l~~~-y~~~~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~ 48 (251)
.++.|+.. |+ .+++..+++.+| +.+|+|||||||||+|.+|.
T Consensus 4 ~l~~L~l~nFr----~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 4 ILKEIRMNNFK----SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEET----TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred EEeEEEEEccc----cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 35555543 42 357788888886 99999999999999999986
No 240
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.76 E-value=1e-05 Score=66.07 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
+++|+|+|||||||+.++|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
No 241
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.75 E-value=1.5e-05 Score=72.62 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=34.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCC-----------CCCCeeEEEEcce
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMGM-----------LPVSSGTAKIYNH 63 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl-----------~~p~~G~i~~~g~ 63 (251)
.+..|..++|+|+||+|||||+++|+|. ..|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 6788898887653
No 242
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.75 E-value=2e-05 Score=62.86 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 243
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.71 E-value=3.4e-06 Score=69.00 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeC
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI 65 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 65 (251)
..+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4689999999999999999998765 4455655443
No 244
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.69 E-value=1.7e-05 Score=65.07 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=26.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 24 FYEDQITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
..+|.+++|+||+|||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46889999999999999999999998664
No 245
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.68 E-value=5.3e-05 Score=67.14 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
..+..+.|.||.|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998754
No 246
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.66 E-value=3.2e-05 Score=68.07 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=24.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999988774
No 247
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.66 E-value=0.00016 Score=61.89 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=24.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 24 FYEDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
+.++.-+.|.||.|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999998754
No 248
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.65 E-value=0.00026 Score=63.86 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
-+++|+++.|.||.|+|||||...++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999877663
No 249
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.58 E-value=3.5e-05 Score=61.71 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGMLPVS 54 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~~p~ 54 (251)
.++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 47999999999999999999975443
No 250
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.56 E-value=8.6e-06 Score=73.21 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=33.6
Q ss_pred ceeeeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhCCC
Q psy7367 15 LAVNGLNVNFYEDQI--TSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 15 ~il~~isl~i~~Ge~--~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 477888999999999 9999999999999999999854
No 251
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.53 E-value=0.00033 Score=54.23 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=30.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeC-CHHH
Q psy7367 150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH-YMDE 193 (251)
Q Consensus 150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tH-d~~~ 193 (251)
+..+|++||.- .|++..+..+++.+.....+..+|.+|+ ++..
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~ 119 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVE 119 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHH
Confidence 45689999984 6889999999998855544555665555 4443
No 252
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.53 E-value=4.1e-05 Score=61.31 Aligned_cols=25 Identities=44% Similarity=0.445 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
No 253
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.52 E-value=3e-05 Score=62.75 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=29.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEccee
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGMLPVS---SGTAKIYNHD 64 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~~p~---~G~i~~~g~~ 64 (251)
.+++|+|++|||||||++.|.+.+++. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 589999999999999999999875432 4777776543
No 254
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.47 E-value=5.3e-05 Score=63.59 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=23.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 24 FYEDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
=.+|.+++|+|++||||||+.++|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999999996
No 255
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.44 E-value=2.8e-05 Score=66.20 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=35.5
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeC
Q psy7367 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI 65 (251)
Q Consensus 17 l~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 65 (251)
+.+.+ ...++.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 33434 567889999999999999999999998664 25577776544
No 256
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.44 E-value=0.00029 Score=74.46 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=26.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 23 NFYEDQITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 23 ~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
-+++|+++.|.||+|+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 389999999999999999999999887543
No 257
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.39 E-value=2.8e-05 Score=65.90 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
.-+++|.||+||||||+.+.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 258
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.37 E-value=5.4e-05 Score=64.09 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=24.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
.++++++.+++| +.|.||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 345555666665 88999999999999999998653
No 259
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.37 E-value=9.5e-05 Score=58.09 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998653
No 260
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.34 E-value=0.00029 Score=59.19 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=37.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCC----------HHHHHhhcCEEEEee
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHY----------MDEADLLGDRIAIIA 205 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd----------~~~~~~~~d~i~~l~ 205 (251)
.+|+++++||--. |+.. +.+.++.+. .|.+||++-|+ ...+..+||+|.-|+
T Consensus 88 ~~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 3589999999854 6654 334444443 48999999993 466667999999875
No 261
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.32 E-value=0.0023 Score=59.06 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGMLPV 53 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~p 53 (251)
++.++.++|++||||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999976654
No 262
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.32 E-value=0.00013 Score=57.81 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997653
No 263
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.27 E-value=5.7e-05 Score=68.24 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=46.3
Q ss_pred cCCCEEEEeCCCCCC---CHHHHHHHHHHHHhhhC-CCeEEEEeCCHHHHH------------hhcCEEEEeeCC
Q psy7367 149 GGSRTVILDEPTSGV---DPYSRRSIWELLIKYKK-GRTVILTTHYMDEAD------------LLGDRIAIIAAG 207 (251)
Q Consensus 149 ~~p~llllDEPt~gL---D~~~~~~l~~~l~~l~~-g~tiii~tHd~~~~~------------~~~d~i~~l~~G 207 (251)
..|.++++||--.-+ ++.....+.+++++.++ |..++++||++..+. ..|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 358899999987777 47788888889998865 999999999997653 346677777654
No 264
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.26 E-value=0.001 Score=55.81 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
....-+.|.||.|+|||||.+.++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44556889999999999999999864
No 265
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.26 E-value=0.00017 Score=57.66 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
|.++.|.|++||||||+.+.|+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999863
No 266
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.26 E-value=0.0036 Score=58.34 Aligned_cols=34 Identities=9% Similarity=0.032 Sum_probs=26.9
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
.|+.+---+.+|+++.|.|++|+|||||+--++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 3444433589999999999999999999766654
No 267
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.25 E-value=0.00053 Score=55.29 Aligned_cols=43 Identities=19% Similarity=0.363 Sum_probs=32.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMD 192 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~ 192 (251)
.++.++++||. ..+++.....+..++.+...+..+|++|+...
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 46889999995 55778888888888877655677788887653
No 268
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.23 E-value=0.0018 Score=59.06 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=23.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 24 FYEDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
=....++.|+|++||||||+.+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999999975
No 269
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.21 E-value=0.00018 Score=56.25 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q psy7367 29 ITSFLGHNGAGKTTTISML 47 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l 47 (251)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 270
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.20 E-value=0.0002 Score=59.02 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 271
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.20 E-value=0.00017 Score=57.79 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
+++.++.|.|++||||||+.+.|+-.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999753
No 272
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.19 E-value=0.0013 Score=58.71 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.+..-+.|.||.|+|||||+++++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345679999999999999999998754
No 273
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.19 E-value=4.8e-05 Score=62.23 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i 58 (251)
+++|.|++||||||+++.|+..+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998775443344
No 274
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.19 E-value=0.00024 Score=63.95 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC-----------CCCCCeeEEEEcc
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMG-----------MLPVSSGTAKIYN 62 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~G-----------l~~p~~G~i~~~g 62 (251)
|-.++|+|.+|+|||||++.|+| ...|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 3457778887765
No 275
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.17 E-value=0.0029 Score=54.44 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCC--------CCCHHHHHHHHHHHHhhhCCCeEEEEeCC
Q psy7367 150 GSRTVILDEPTS--------GVDPYSRRSIWELLIKYKKGRTVILTTHY 190 (251)
Q Consensus 150 ~p~llllDEPt~--------gLD~~~~~~l~~~l~~l~~g~tiii~tHd 190 (251)
++.+|++||--. ..+......+++.+.+...+..+|++|+.
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 467999999752 33677777777777765556778888864
No 276
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.16 E-value=0.00046 Score=55.25 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh-CC----CCCCee----EEEEcce
Q psy7367 29 ITSFLGHNGAGKTTTISMLM-GM----LPVSSG----TAKIYNH 63 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~-Gl----~~p~~G----~i~~~g~ 63 (251)
-++|+|++|+|||||++.+. +. ..|+.| .+.++|+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 58999999999999997555 43 456655 4445543
No 277
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.15 E-value=0.00061 Score=60.42 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=25.2
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 22 VNFYEDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 22 l~i~~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
-.+++|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688899999999999999999999874
No 278
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.15 E-value=0.00021 Score=60.82 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.+++|+||||||||||.+.|+.-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998743
No 279
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.15 E-value=0.00023 Score=57.43 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
No 280
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.12 E-value=0.0002 Score=56.88 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998643
No 281
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.11 E-value=0.0011 Score=70.93 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=24.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 24 FYEDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
+++|.++.|.||+|+|||||+..++.-
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999999998777653
No 282
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.11 E-value=0.00015 Score=57.87 Aligned_cols=25 Identities=28% Similarity=0.147 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
.++.++.|+|++||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4678899999999999999999983
No 283
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.10 E-value=0.00025 Score=57.99 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q psy7367 30 TSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 30 ~~liG~NGaGKSTLlk~l~Gl 50 (251)
+.|+||+|||||||++.|..-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999998754
No 284
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.08 E-value=0.00032 Score=56.04 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.+.++.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999753
No 285
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.08 E-value=0.00033 Score=56.66 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999866
No 286
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.07 E-value=0.00031 Score=55.52 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~G 49 (251)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 287
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.07 E-value=0.00031 Score=56.71 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcce
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~ 63 (251)
..+++|+|++||||||+.+.|+.. |-..++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence 358999999999999999999985 55566543
No 288
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.05 E-value=0.0024 Score=58.83 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=28.3
Q ss_pred ceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 15 ~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
..|+.+.--+.+|+++.|.|+.|+|||||+--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 34555544689999999999999999999877664
No 289
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.04 E-value=0.00059 Score=60.45 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=21.4
Q ss_pred EeCCcEEEEEcCCCCcHHHH-HHHHhCC
Q psy7367 24 FYEDQITSFLGHNGAGKTTT-ISMLMGM 50 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTL-lk~l~Gl 50 (251)
+++| ++-|.||.|+||||| +.+++..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 7889 999999999999999 4444443
No 290
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.03 E-value=0.0003 Score=56.09 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
=.++|+|++|+|||||++.+.+-.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999863
No 291
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.02 E-value=0.00039 Score=56.40 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987544
No 292
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.02 E-value=0.00039 Score=56.63 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
.+|-+++|.|+.||||||+.+.|+-
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
No 293
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.01 E-value=0.00032 Score=60.92 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=28.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcc
Q psy7367 24 FYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g 62 (251)
-..+.++.|.||+||||||+.+.|+.-++ .|.+.+++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 34678999999999999999999986442 35566654
No 294
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.01 E-value=0.00036 Score=56.02 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.++-+++|+|+.||||||+.+.|+-.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 36779999999999999999999853
No 295
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.99 E-value=0.00042 Score=55.38 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
+.+++|.|+.||||||+.+.|+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999874
No 296
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.98 E-value=0.00095 Score=61.56 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHhhhCCCeEEEEeCCHHHH
Q psy7367 136 GMQRKLSVAMAFIGGSRTVILDEPTS-GVDPYSRRSIWELLIKYKKGRTVILTTHYMDEA 194 (251)
Q Consensus 136 G~kqrv~ia~al~~~p~llllDEPt~-gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~~~ 194 (251)
.+.+....+...+.+++++|+..... ++.... ..+.+.+++ .++.+|++.+-.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccch
Confidence 36666677777788888888876544 455443 445555543 367777777655543
No 297
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.96 E-value=0.00045 Score=56.29 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=23.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 24 FYEDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.++|-+++|.|+.||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999853
No 298
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.92 E-value=0.00047 Score=54.96 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
++.|.|+.||||||+.+.|+--+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998644
No 299
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.92 E-value=0.00049 Score=55.77 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998743
No 300
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.91 E-value=0.00035 Score=55.53 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=17.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
++.++.|.|+.||||||+.+.|+-.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5679999999999999999999853
No 301
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.90 E-value=0.00051 Score=55.13 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 302
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.88 E-value=0.0014 Score=50.53 Aligned_cols=39 Identities=10% Similarity=-0.004 Sum_probs=29.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeC
Q psy7367 150 GSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTH 189 (251)
Q Consensus 150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tH 189 (251)
+..++++||.- .|++..+..+++.+.+.. .+..+|.+|+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 35789999964 678888888988887764 3566666665
No 303
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.87 E-value=0.0006 Score=54.86 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
.+++|+|++|||||||+..|+..++
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3799999999999999999998654
No 304
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.83 E-value=6.6e-05 Score=63.34 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=28.9
Q ss_pred HHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHh-hhCCCeEEEEeC
Q psy7367 145 MAFIGGSRTVILDEPTS-GVDPYSRRSIWELLIK-YKKGRTVILTTH 189 (251)
Q Consensus 145 ~al~~~p~llllDEPt~-gLD~~~~~~l~~~l~~-l~~g~tiii~tH 189 (251)
.++...|+++|+|||-. ..+.......++.+.. +..|..|+.++|
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 33446899999999764 2443333334444444 356889999998
No 305
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.83 E-value=0.0028 Score=67.13 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 24 FYEDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
+++|.++.|.||.|+|||||.-.++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999877664
No 306
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.82 E-value=0.0016 Score=57.48 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=32.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHH
Q psy7367 150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMD 192 (251)
Q Consensus 150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~ 192 (251)
++.++++||. -.|+......+.+.+.+...+..+|++|++..
T Consensus 119 ~~~vliiDe~-~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEV-HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECG-GGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CeEEEEEECc-chhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 6789999995 45788888888887776555677888888764
No 307
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.81 E-value=0.0011 Score=58.51 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=37.0
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC----CCCCCeeEEEEcc
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG----MLPVSSGTAKIYN 62 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G----l~~p~~G~i~~~g 62 (251)
...++...+++ .|.-+.|+|++|+|||||...+.+ +...+...|...+
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 35778888888 788999999999999999999987 4444555554433
No 308
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.80 E-value=0.0071 Score=52.55 Aligned_cols=42 Identities=19% Similarity=0.405 Sum_probs=32.4
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHhhhCCCeEEEEeCCHH
Q psy7367 150 GSRTVILDEPTSGVD-PYSRRSIWELLIKYKKGRTVILTTHYMD 192 (251)
Q Consensus 150 ~p~llllDEPt~gLD-~~~~~~l~~~l~~l~~g~tiii~tHd~~ 192 (251)
+++++++||.-. |. ......+...+.+...+..+|++|++..
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 789999999843 44 6677778887777666778888888765
No 309
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.79 E-value=0.00074 Score=54.28 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=24.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 24 FYEDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
++.+-+++|.|+.||||||+.+.|+-.+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467799999999999999999998643
No 310
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.00057 Score=54.50 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
=.++|+|+.|||||||++.+++-..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3789999999999999999998643
No 311
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.78 E-value=0.00073 Score=58.26 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 312
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.78 E-value=0.00084 Score=55.33 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
+|-+++|+|+.||||||+.+.|+-.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
No 313
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.76 E-value=0.00066 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.++|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998854
No 314
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.75 E-value=0.0013 Score=65.50 Aligned_cols=26 Identities=35% Similarity=0.344 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGMLPV 53 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~~p 53 (251)
..+.|.||+|+|||++.+.|+.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47899999999999999999987643
No 315
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.75 E-value=0.00078 Score=54.47 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999864
No 316
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.74 E-value=0.00083 Score=55.70 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=21.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.++.+++|+|+.||||||+.+.|+--
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999853
No 317
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.74 E-value=0.00083 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999854
No 318
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.73 E-value=0.00084 Score=53.59 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
+++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 319
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.73 E-value=0.00086 Score=51.87 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999973
No 320
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.72 E-value=0.00085 Score=54.94 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~G 49 (251)
.++|+||.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
No 321
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.71 E-value=0.00075 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.+++|+|+.||||||+.+.|+-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999853
No 322
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.70 E-value=0.00099 Score=52.36 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~G 49 (251)
++++|+|+.||||||+.+.|+-
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999975
No 323
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.69 E-value=0.00092 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q psy7367 30 TSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 30 ~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
++|+|+.|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
No 324
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.69 E-value=0.00074 Score=52.14 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++++|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 325
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.69 E-value=0.0011 Score=53.80 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.+-+++|+|+.||||||+.+.|+-.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999853
No 326
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.69 E-value=0.00099 Score=52.14 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
+++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 327
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.68 E-value=0.00087 Score=52.41 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 328
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.68 E-value=0.00092 Score=53.23 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
..+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999753
No 329
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.67 E-value=0.0011 Score=56.49 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++|+|+.|||||||++.++|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999974
No 330
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.66 E-value=0.00077 Score=51.65 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.++++|+.|||||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999875
No 331
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.65 E-value=0.00085 Score=55.39 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.+.++.|+|+.||||||+.+.|+--
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999854
No 332
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.65 E-value=0.001 Score=53.87 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
...+++|.|+.||||||+.+.|+-.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999853
No 333
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.65 E-value=0.00085 Score=60.50 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q psy7367 30 TSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 30 ~~liG~NGaGKSTLlk~l~Gl 50 (251)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
No 334
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.65 E-value=0.003 Score=58.93 Aligned_cols=75 Identities=13% Similarity=0.195 Sum_probs=57.9
Q ss_pred cCCCCCcCChhHHHHHHHHHHHc--c---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEe
Q psy7367 126 RTSLANTLSGGMQRKLSVAMAFI--G---------------GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTT 188 (251)
Q Consensus 126 ~~~~~~~LSgG~kqrv~ia~al~--~---------------~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~t 188 (251)
..+..+.+||||+|-..+|.+.+ + .-.+++|||. +-+|....+..+++++++ |.=+|++|
T Consensus 373 ~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQliiat 449 (483)
T 3euj_A 373 MRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLIAA 449 (483)
T ss_dssp EECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEEEE
T ss_pred eecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEEEC
Confidence 34457899999999655554432 2 2357999999 999999999999999977 45588888
Q ss_pred CCHHHHHhhcCEEEEee
Q psy7367 189 HYMDEADLLGDRIAIIA 205 (251)
Q Consensus 189 Hd~~~~~~~~d~i~~l~ 205 (251)
=+ .+..++|.++.+-
T Consensus 450 P~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 450 PE--NISPERGTTYKLV 464 (483)
T ss_dssp SS--SCCCSSSEEEECC
T ss_pred cc--hhhhccCceEEEE
Confidence 77 6667788887775
No 335
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.65 E-value=0.00085 Score=51.49 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
No 336
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.64 E-value=0.001 Score=54.48 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~G 49 (251)
.++|+||.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999974
No 337
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.64 E-value=0.00086 Score=51.50 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999998853
No 338
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.64 E-value=0.0009 Score=53.32 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
=.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999853
No 339
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.62 E-value=0.00089 Score=51.49 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 340
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.62 E-value=0.0009 Score=51.74 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
No 341
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.62 E-value=0.00064 Score=53.56 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
+.=.++|+|++|||||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999885
No 342
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.62 E-value=0.0011 Score=54.16 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.-+++|+|+.||||||+.+.|+-.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999864
No 343
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.61 E-value=0.00097 Score=52.87 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++|+|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999999864
No 344
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.61 E-value=0.001 Score=56.19 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
.++|+|++|+|||||++.|.|-..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 579999999999999999998653
No 345
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.60 E-value=0.00095 Score=51.71 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 346
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.60 E-value=0.0014 Score=51.13 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999874
No 347
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.60 E-value=0.001 Score=52.60 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q psy7367 30 TSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 30 ~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
++|+|+.|+|||||++.+.+-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999999854
No 348
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.60 E-value=0.0011 Score=55.93 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-+++|.|+.||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 349
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.59 E-value=0.00096 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.+++|+|+.||||||+.+.|+-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 350
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.59 E-value=0.00095 Score=51.50 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998643
No 351
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.59 E-value=0.00091 Score=51.72 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 352
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.58 E-value=0.00099 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++|+|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999988743
No 353
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.58 E-value=0.00099 Score=51.36 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
No 354
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.57 E-value=0.0013 Score=55.93 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 355
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.56 E-value=0.001 Score=51.93 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 356
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.54 E-value=0.001 Score=52.00 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
No 357
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.53 E-value=0.0013 Score=57.39 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.++|+|++|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 358
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.51 E-value=0.0031 Score=54.31 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=31.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHH
Q psy7367 150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMD 192 (251)
Q Consensus 150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~ 192 (251)
++.++++||. -.++......+.+.+.+...+..+|++|++..
T Consensus 107 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEA-DSMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESG-GGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECc-ccCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 5899999995 44666777777777777656777888887754
No 359
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.50 E-value=0.0012 Score=52.07 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998643
No 360
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.49 E-value=0.0015 Score=54.19 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
+++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 361
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.49 E-value=0.0014 Score=51.15 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998743
No 362
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.49 E-value=0.0012 Score=50.89 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 363
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.48 E-value=0.0012 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
No 364
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.48 E-value=0.0014 Score=56.55 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
.-+++|.|+.||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999984
No 365
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.48 E-value=0.0007 Score=58.91 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
++-+++|.||+||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998643
No 366
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.47 E-value=0.0012 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 367
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.46 E-value=0.0013 Score=51.01 Aligned_cols=21 Identities=43% Similarity=0.460 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~G 49 (251)
.++++|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999976
No 368
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.45 E-value=0.0013 Score=51.96 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 369
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.45 E-value=0.0017 Score=54.71 Aligned_cols=25 Identities=36% Similarity=0.337 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
.++-+++|+||.||||||+.+.|+-
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999974
No 370
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.44 E-value=0.0014 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
-++|+|+.|+|||||++.+.|-..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998654
No 371
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.44 E-value=0.0016 Score=56.87 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
+++|+|+.|||||||++.|.|-.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999953
No 372
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.44 E-value=0.0014 Score=56.14 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|++|+|||||++.|.+-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998754
No 373
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.42 E-value=0.0014 Score=50.49 Aligned_cols=20 Identities=35% Similarity=0.375 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q psy7367 30 TSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 30 ~~liG~NGaGKSTLlk~l~G 49 (251)
++++|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999976
No 374
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.41 E-value=0.0014 Score=51.17 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
No 375
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.40 E-value=0.0015 Score=51.36 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
No 376
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.39 E-value=0.0052 Score=57.34 Aligned_cols=28 Identities=18% Similarity=0.143 Sum_probs=23.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 24 FYEDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
+.+..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455568999999999999999998743
No 377
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.39 E-value=0.0015 Score=50.91 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998743
No 378
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.38 E-value=0.0015 Score=51.13 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998743
No 379
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.38 E-value=0.0015 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.++++|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 380
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.37 E-value=0.0017 Score=54.72 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++|+|+.|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 381
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.37 E-value=0.0019 Score=51.12 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44468999999999999999999743
No 382
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.34 E-value=0.0038 Score=51.62 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=29.3
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
...++..-+++ .|..+.|+||+|||||||...|+.-
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34677766665 5789999999999999999999864
No 383
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.34 E-value=0.0016 Score=51.39 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 384
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.33 E-value=0.0017 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 385
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.32 E-value=0.0024 Score=54.68 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCeeE
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGT 57 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~~p~~G~ 57 (251)
-.++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 478999999999999999999976654443
No 386
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.31 E-value=0.0017 Score=52.91 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 387
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.31 E-value=0.0017 Score=52.03 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 388
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.30 E-value=0.0018 Score=52.08 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 389
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.30 E-value=0.0021 Score=52.67 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~G 49 (251)
.++|+|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 390
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.30 E-value=0.0021 Score=54.74 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++|+|+.|||||||++.++|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999954
No 391
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.30 E-value=0.0017 Score=51.49 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++++|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 392
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.29 E-value=0.0017 Score=51.72 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999873
No 393
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.28 E-value=0.0012 Score=54.03 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-.++|+|+.|+|||||++.|.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 394
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.28 E-value=0.0024 Score=52.62 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
+|-++.|+|+.||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999997643
No 395
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.28 E-value=0.0025 Score=52.88 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
-+|-++.|.|+.||||||+++.|+-.+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999976554
No 396
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.28 E-value=0.0021 Score=55.23 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++|+|+.|||||||++.++|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999964
No 397
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.28 E-value=0.0021 Score=51.51 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 398
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.27 E-value=0.0023 Score=55.14 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~G 49 (251)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 399
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.27 E-value=0.0019 Score=51.40 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 400
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.27 E-value=0.0023 Score=51.37 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 401
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.27 E-value=0.0017 Score=51.67 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
=.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998854
No 402
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.26 E-value=0.0018 Score=51.71 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998643
No 403
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.26 E-value=0.0028 Score=49.65 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
..+..+.|.||.|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998754
No 404
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.25 E-value=0.0098 Score=50.17 Aligned_cols=52 Identities=19% Similarity=0.170 Sum_probs=38.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCC----------HHHHHhhcCEEEEee
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHY----------MDEADLLGDRIAIIA 205 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd----------~~~~~~~~d~i~~l~ 205 (251)
.+.+++++||---..| ..++.+.+.+ .|+.||++.+| ...+..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh--CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999866644 3344444433 58999999999 556667899998875
No 405
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.25 E-value=0.0023 Score=51.64 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 406
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.24 E-value=0.002 Score=52.59 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-.++|+|+.|||||||++.|++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998753
No 407
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.24 E-value=0.0021 Score=54.06 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=22.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 24 FYEDQITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
..+|-++.|.|+.||||||+.+.|+-.+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999986553
No 408
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.24 E-value=0.0024 Score=55.34 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999975
No 409
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.0024 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl 50 (251)
=.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999964
No 410
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.24 E-value=0.002 Score=50.58 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++++|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999753
No 411
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.23 E-value=0.0027 Score=49.93 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 412
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.22 E-value=0.0027 Score=50.45 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998743
No 413
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.22 E-value=0.0024 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-.++|+|+.|+|||||++.+.+-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999984
No 414
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.21 E-value=0.0028 Score=53.54 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
+|.++.|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987553
No 415
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.20 E-value=0.0021 Score=51.71 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~G 49 (251)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 416
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.20 E-value=0.002 Score=51.89 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
=-++|+|+.|+|||||++.+.+-.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 358999999999999999999754
No 417
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.19 E-value=0.0025 Score=52.58 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999985
No 418
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.19 E-value=0.0021 Score=50.50 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~G 49 (251)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999984
No 419
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.19 E-value=0.0022 Score=50.67 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999753
No 420
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.18 E-value=0.0023 Score=50.89 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
No 421
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.18 E-value=0.0021 Score=51.23 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999999754
No 422
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.17 E-value=0.0027 Score=56.59 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3899999999999999999997653
No 423
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.17 E-value=0.0023 Score=51.06 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 424
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.16 E-value=0.0065 Score=65.22 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=30.9
Q ss_pred cceeeeee--EEEeCCcEEEEEcCCCCcHHHHHHHHh
Q psy7367 14 KLAVNGLN--VNFYEDQITSFLGHNGAGKTTTISMLM 48 (251)
Q Consensus 14 ~~il~~is--l~i~~Ge~~~liG~NGaGKSTLlk~l~ 48 (251)
.+.|+++. .-+++|+.+.|.||.|||||||...+.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 45677876 579999999999999999999998877
No 425
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.15 E-value=0.0022 Score=52.17 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999988753
No 426
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.15 E-value=0.0029 Score=51.40 Aligned_cols=24 Identities=29% Similarity=0.196 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
-++|+|+.|+|||||++.+.+-..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 479999999999999999998543
No 427
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.15 E-value=0.003 Score=50.68 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
-++|+|+.|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998543
No 428
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.15 E-value=0.0027 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
+-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998744
No 429
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.14 E-value=0.0024 Score=50.00 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 430
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.14 E-value=0.0034 Score=52.21 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.+..+.|+|+.||||||+.+.|+--
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999854
No 431
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.14 E-value=0.0033 Score=52.19 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
+|-++.+-|+.||||||+++.|.-.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987654
No 432
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.13 E-value=0.0024 Score=50.94 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 433
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.12 E-value=0.0031 Score=50.53 Aligned_cols=24 Identities=17% Similarity=0.226 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.=-++|+|+.|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999874
No 434
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.12 E-value=0.0023 Score=51.54 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 435
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.12 E-value=0.0025 Score=50.75 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 436
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.0025 Score=50.98 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl 50 (251)
=-++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 437
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.0025 Score=50.45 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 438
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.10 E-value=0.003 Score=51.55 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 439
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.09 E-value=0.0026 Score=51.12 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
+-=-++|+|+.|+|||||++.+.+-.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 33468999999999999999998753
No 440
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.08 E-value=0.0026 Score=51.29 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl 50 (251)
=-++|+|+.|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 441
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.08 E-value=0.0032 Score=58.45 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=33.0
Q ss_pred eeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEE
Q psy7367 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60 (251)
Q Consensus 16 il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~ 60 (251)
+++.+ +.+-+|+..+|+||+|+|||||++.|+.-.....+.+.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 44444 677899999999999999999999998755433344443
No 442
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.06 E-value=0.0021 Score=50.34 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++++|+.|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 443
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.04 E-value=0.0029 Score=54.19 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
.++|+|+.|+|||||++.|+|-..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999999653
No 444
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.04 E-value=0.0027 Score=51.39 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
--++|+|+.|+|||||++.+.+-.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999999743
No 445
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.03 E-value=0.0031 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.229 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.=.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999764
No 446
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.03 E-value=0.0039 Score=52.11 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
+|-+++|.|+.||||||+.+.|+-.++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997653
No 447
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.02 E-value=0.0034 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++|+|+.|+|||||++.|.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
No 448
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.02 E-value=0.0028 Score=51.68 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
No 449
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.00 E-value=0.0041 Score=51.79 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=27.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i 58 (251)
.+|.++.+-|+.||||||+.+.|.-.+.. .+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 36899999999999999999999987765 3443
No 450
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.98 E-value=0.0021 Score=50.54 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=9.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 451
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.98 E-value=0.0032 Score=50.18 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999888763
No 452
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.98 E-value=0.0042 Score=54.82 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=40.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-------EcceeCCC--ChHHhhcceEEEc-cCCCCCCCCCHHHHHH
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-------IYNHDIRT--DMTTIRRSLGVCP-QYNALFDKLTVEEHMW 96 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~-------~~g~~~~~--~~~~~~~~i~~v~-q~~~l~~~ltv~e~l~ 96 (251)
+.+++|+||+|||||||...|+--+. |.|. +.|.++.. +...-+..+-+-+ +........++.+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~ 79 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN---GEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQD 79 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT---EEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc---cceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHH
Confidence 45899999999999999999986542 4442 33455532 2222233443333 2223334567766654
Q ss_pred H
Q psy7367 97 F 97 (251)
Q Consensus 97 ~ 97 (251)
.
T Consensus 80 ~ 80 (322)
T 3exa_A 80 L 80 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 453
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.98 E-value=0.0011 Score=65.61 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=35.1
Q ss_pred eeEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEcceeC
Q psy7367 20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI 65 (251)
Q Consensus 20 isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 65 (251)
.++.+.++..+.|.||+|+|||||.++|++... .+-+.+++.++
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l 547 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL 547 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSS
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHh
Confidence 366788999999999999999999999999764 34555665554
No 454
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.98 E-value=0.0043 Score=51.96 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
.+|-++.+.|+.||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999987554
No 455
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.97 E-value=0.0039 Score=55.16 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++.|+||+|||||||.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999754
No 456
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.95 E-value=0.0036 Score=49.04 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
..+..+.|.||.|+|||||++.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998754
No 457
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.95 E-value=0.0037 Score=53.26 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++++|+.|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 458
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.94 E-value=0.0043 Score=55.22 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
++.++.|+||.|||||||...|+--+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 46799999999999999999999765
No 459
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.93 E-value=0.0045 Score=50.16 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 460
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.93 E-value=0.0032 Score=50.71 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 461
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.89 E-value=0.0036 Score=49.87 Aligned_cols=22 Identities=18% Similarity=0.207 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 462
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.88 E-value=0.0046 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
No 463
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.88 E-value=0.018 Score=56.25 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=29.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-----------CCCeEEEEeC
Q psy7367 150 GSRTVILDEPTSGVDPYSRRSIWELLIKYK-----------KGRTVILTTH 189 (251)
Q Consensus 150 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~-----------~g~tiii~tH 189 (251)
.+.+++|||- .-+++.....+++.+.+-. .+..||++|+
T Consensus 579 ~~~vl~lDEi-~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 579 PYSVVLLDAI-EKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp SSSEEEEECG-GGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred CCeEEEEeCc-cccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 3459999998 4568888888888887621 2457888887
No 464
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.87 E-value=0.0037 Score=52.11 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=24.2
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 21 NVNFYEDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
+-.+++..++.|+||.||||||..+.|+-
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556778999999999999999999984
No 465
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.85 E-value=0.0065 Score=50.20 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=37.6
Q ss_pred ccCCCEEEEeCCCC----CCCHHHHHHHHHHHHhh-hC-CCeEEEEeCCHH----------HHHhhcCEEEEee
Q psy7367 148 IGGSRTVILDEPTS----GVDPYSRRSIWELLIKY-KK-GRTVILTTHYMD----------EADLLGDRIAIIA 205 (251)
Q Consensus 148 ~~~p~llllDEPt~----gLD~~~~~~l~~~l~~l-~~-g~tiii~tHd~~----------~~~~~~d~i~~l~ 205 (251)
..+|+++++|--+. .-|......+...|..+ ++ ++++++++|-.. ..+..||-++.|+
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 45888999986432 11444455566666665 33 999999998532 2345789888875
No 466
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.83 E-value=0.002 Score=52.49 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 467
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.81 E-value=0.005 Score=50.39 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-.++|+|+.|+|||||++-++.-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999988643
No 468
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.80 E-value=0.00096 Score=61.42 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=31.5
Q ss_pred EEEeCC--cEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEccee
Q psy7367 22 VNFYED--QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64 (251)
Q Consensus 22 l~i~~G--e~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~g~~ 64 (251)
|.+.++ .+++++|++|+||||+...|++.+.....+|.+-.-+
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 444444 5999999999999999999999776443455554433
No 469
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.79 E-value=0.0031 Score=49.99 Aligned_cols=22 Identities=32% Similarity=0.298 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~G 49 (251)
=-++++|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4589999999999999999965
No 470
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.79 E-value=0.006 Score=49.27 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=34.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhh-CCCeEEEEeCCHH----------HHHhhcCEEEEee
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMD----------EADLLGDRIAIIA 205 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~g~tiii~tHd~~----------~~~~~~d~i~~l~ 205 (251)
.+++++++||--. +++. +.+.++.+. .|..|+++.++.+ .+..+||.+.-|+
T Consensus 75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3678999999633 5443 444555442 4888999888543 2344689987775
No 471
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.77 E-value=0.0033 Score=53.27 Aligned_cols=29 Identities=24% Similarity=0.198 Sum_probs=24.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 24 FYEDQITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 24 i~~Ge~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
..++-+++|.|+.||||||+.+.|+-.+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35788999999999999999999987653
No 472
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.76 E-value=0.0014 Score=55.38 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=22.5
Q ss_pred eEEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 21 NVNFYEDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 21 sl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
++..+.| +.|.||+|+|||||+++++..
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 3344555 779999999999999999973
No 473
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.73 E-value=0.0021 Score=51.56 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=4.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998875
No 474
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.71 E-value=0.0046 Score=49.94 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999998643
No 475
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.0049 Score=50.51 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 476
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.65 E-value=0.0049 Score=49.87 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~G 49 (251)
=.++++|+.|+|||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999988874
No 477
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.64 E-value=0.007 Score=53.29 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
..++.|+||+|||||||...|+--.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999998654
No 478
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.59 E-value=0.0055 Score=50.09 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 479
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.53 E-value=0.0057 Score=49.42 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
-++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999853
No 480
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.50 E-value=0.0081 Score=49.55 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
++.|+||.||||+|..+.|+--
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999853
No 481
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.46 E-value=0.014 Score=47.24 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=26.7
Q ss_pred cceeeeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q psy7367 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 14 ~~il~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~G 49 (251)
+..++..-+. -.|.-+.|.|++|+|||||...+..
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3455664444 4578999999999999999887754
No 482
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.44 E-value=0.0093 Score=49.06 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGMLP 52 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl~~ 52 (251)
|.+++|=|+-||||||+++.|+-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999987654
No 483
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.39 E-value=0.012 Score=50.93 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCee
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGMLPVSSG 56 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~~p~~G 56 (251)
-.++++|.+|+|||||++.|.|-.....|
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred ceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 46899999999999999999997644333
No 484
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.38 E-value=0.0079 Score=54.59 Aligned_cols=41 Identities=7% Similarity=0.138 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCCcccCCCCCcCChhHHHHHHHHHHHccCCCEEEE
Q psy7367 112 EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156 (251)
Q Consensus 112 ~~~~~l~~~~l~~~~~~~~~~LSgG~kqrv~ia~al~~~p~llll 156 (251)
.+.++++.++.... ...+|..+...+.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45667777766432 348899998888777767778988887
No 485
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.35 E-value=0.036 Score=48.68 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=31.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHhhhCCCeEEEEeCCHH
Q psy7367 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMD 192 (251)
Q Consensus 149 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~g~tiii~tHd~~ 192 (251)
.+++++|+||.- .|...+...+++.+.+-..+..+|++|++.+
T Consensus 107 ~~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 468999999974 4667777777766655444677888998874
No 486
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=95.27 E-value=0.014 Score=51.89 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=26.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 18 ~~isl~i~~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
..+.++++----++|+|..+||||||++.|++-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 445566665556899999999999999999874
No 487
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.24 E-value=0.011 Score=53.99 Aligned_cols=68 Identities=13% Similarity=0.045 Sum_probs=38.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE-------EcceeCCC--ChHHhhcceEEEc-cCCCCCCCCCHHHHHHH
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-------IYNHDIRT--DMTTIRRSLGVCP-QYNALFDKLTVEEHMWF 97 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~-------~~g~~~~~--~~~~~~~~i~~v~-q~~~l~~~ltv~e~l~~ 97 (251)
.+++|.||+|||||||.+.|+--+. |.|. +.|.++.. ....-+..+-|-+ +...+....++.+++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~---~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~ 79 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN---GEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETE 79 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT---EEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC---CeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHH
Confidence 4789999999999999999986442 3332 22334422 1222233444433 22233345677776655
Q ss_pred H
Q psy7367 98 Y 98 (251)
Q Consensus 98 ~ 98 (251)
.
T Consensus 80 a 80 (409)
T 3eph_A 80 C 80 (409)
T ss_dssp H
T ss_pred H
Confidence 3
No 488
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.012 Score=53.16 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=31.9
Q ss_pred eEEEe-CCc-EEEEEcCCCCcHHHHHHHHhCCCC-----------CCeeEEEEccee
Q psy7367 21 NVNFY-EDQ-ITSFLGHNGAGKTTTISMLMGMLP-----------VSSGTAKIYNHD 64 (251)
Q Consensus 21 sl~i~-~Ge-~~~liG~NGaGKSTLlk~l~Gl~~-----------p~~G~i~~~g~~ 64 (251)
.|.|. .|. -+||+|...+||||||+.|+|-.. |..|.+.+.|..
T Consensus 64 ~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~ 120 (376)
T 4a9a_A 64 GFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK 120 (376)
T ss_dssp TTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE
T ss_pred CceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE
Confidence 45553 343 589999999999999999999642 335777776644
No 489
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.16 E-value=0.011 Score=52.50 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 26 EDQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 26 ~Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
..-+++|+|+.|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998754
No 490
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.13 E-value=0.0092 Score=54.59 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.++|+|+.|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 491
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.09 E-value=0.0037 Score=50.31 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~G 49 (251)
=-++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4589999999999999988875
No 492
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.04 E-value=0.0069 Score=49.41 Aligned_cols=38 Identities=21% Similarity=0.122 Sum_probs=26.1
Q ss_pred HHHHHHHccCCCEEEEeCCCC-----CCCHHHHHHHHHHHHhh
Q psy7367 141 LSVAMAFIGGSRTVILDEPTS-----GVDPYSRRSIWELLIKY 178 (251)
Q Consensus 141 v~ia~al~~~p~llllDEPt~-----gLD~~~~~~l~~~l~~l 178 (251)
-.|++.+..+|.+.+.++|+. .+|+..++++...+++.
T Consensus 167 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (221)
T 3gj0_A 167 LWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVA 209 (221)
T ss_dssp HHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhh
Confidence 366777777777777776655 67777777777666554
No 493
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.01 E-value=0.0073 Score=55.69 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=30.1
Q ss_pred eeeeEEEeCCcE--EEEEcCCCCcHHHHHHHHhCCCCCCeeEE
Q psy7367 18 NGLNVNFYEDQI--TSFLGHNGAGKTTTISMLMGMLPVSSGTA 58 (251)
Q Consensus 18 ~~isl~i~~Ge~--~~liG~NGaGKSTLlk~l~Gl~~p~~G~i 58 (251)
+.+.-.+..|.+ +.|.||.|+|||||.++|+......-..+
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 334444555654 89999999999999999999876544433
No 494
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.00 E-value=0.0079 Score=53.43 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
.++|+|+.|||||||++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999964
No 495
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.99 E-value=0.0023 Score=51.40 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 29 ITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 29 ~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
-++|+|+.|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 496
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.96 E-value=0.013 Score=51.56 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=27.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEc
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl~~p~~G~i~~~ 61 (251)
.+|..+.|.||.|+|||||.+.++.........+.+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 3467899999999999999999998765332333443
No 497
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.96 E-value=0.014 Score=49.15 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMG 49 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~G 49 (251)
--+||+|+.||||||+.+.|+-
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 3579999999999999999864
No 498
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.93 E-value=0.016 Score=50.51 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 27 DQITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 27 Ge~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
+.-+.|.||.|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
No 499
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.86 E-value=0.014 Score=49.35 Aligned_cols=26 Identities=15% Similarity=0.022 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q psy7367 25 YEDQITSFLGHNGAGKTTTISMLMGM 50 (251)
Q Consensus 25 ~~Ge~~~liG~NGaGKSTLlk~l~Gl 50 (251)
.+...+.|.||.|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457889999999999999999874
No 500
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.83 E-value=0.014 Score=55.30 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q psy7367 28 QITSFLGHNGAGKTTTISMLMGML 51 (251)
Q Consensus 28 e~~~liG~NGaGKSTLlk~l~Gl~ 51 (251)
=.++|+|..|+|||||++.|.|-.
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 489999999999999999999964
Done!