RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7367
(251 letters)
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 323 bits (830), Expect = e-113
Identities = 119/218 (54%), Positives = 161/218 (73%), Gaps = 1/218 (0%)
Query: 3 IQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
I+NL+K + G K AV+ L++N Y+ +I LGHNGAGKTTT+ ML G L +SGTA I
Sbjct: 3 IRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYIN 62
Query: 62 NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
+ IRTD R+SLG CPQ++ALFD+LTV EH+ FY++LK +PK + E+ ++ LG
Sbjct: 63 GYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLG 122
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKG 181
+ K A TLSGGM+RKLS+A+A IGG ++LDEPTSG+DP SRR+IW+L+++ +KG
Sbjct: 123 LTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKG 182
Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219
R++ILTTH MDEA+ L DRIAI++ GKL+C GS LK
Sbjct: 183 RSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 321 bits (825), Expect = e-101
Identities = 144/247 (58%), Positives = 192/247 (77%), Gaps = 1/247 (0%)
Query: 1 MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ ++NL K F P+G+ AV+ LN+ FYE+QIT+FLGHNGAGKTTT+S+L G+LP +SGT
Sbjct: 929 VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVL 988
Query: 60 IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
+ DI T++ +R+SLG+CPQ+N LF LTV EH+ FY+QLK + AQLE+ M+ D
Sbjct: 989 VGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLED 1048
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
G+ HKR A LSGGMQRKLSVA+AF+G ++ V+LDEPTSGVDPYSRRSIW+LL+KY+
Sbjct: 1049 TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR 1108
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQLQA 239
GRT+I++TH+MDEADLLGDRIAII+ G+L C G+ +FLKN F G+YL+L K +Q+
Sbjct: 1109 SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQS 1168
Query: 240 EDIGLDG 246
+ G +G
Sbjct: 1169 QRGGCEG 1175
Score = 173 bits (439), Expect = 3e-49
Identities = 91/238 (38%), Positives = 142/238 (59%), Gaps = 2/238 (0%)
Query: 1 MAIQNLSKRFP-NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ + L+K + AV+ L V + LG NGAGKTTT ML G V+SG A
Sbjct: 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 1997
Query: 60 IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
+ I T+++ + +++G CPQ++A+ D LT EH++ Y++L+ VP + + + I
Sbjct: 1998 VAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQS 2057
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-Y 178
LG+ LA T SGG +RKLS A+A IG V+LDEPT+G+DP +RR +W ++
Sbjct: 2058 LGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117
Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQ 236
++GR V+LT+H M+E + L R+AI+ G QC G+ LK+ F GY +++ +KS +
Sbjct: 2118 REGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPK 2175
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 238 bits (610), Expect = 9e-79
Identities = 86/231 (37%), Positives = 141/231 (61%), Gaps = 2/231 (0%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++NL+K++ K A++G++ +I LG NGAGKTT + +L G+L +SG +
Sbjct: 7 VRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLG 66
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
+D+ + +RR +G PQ +L+ +LTV E++ F+++L + K+ A+ I ++ G+
Sbjct: 67 YDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGL 126
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-- 180
K TLSGGM+++LS+A+A + +ILDEPTSG+DP SRR IWELL + K
Sbjct: 127 EDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEG 186
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLD 231
G T++L+TH ++EA+ L DR+ I+ GK+ G+ LK F + L+
Sbjct: 187 GVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELE 237
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 200 bits (512), Expect = 2e-65
Identities = 71/208 (34%), Positives = 118/208 (56%), Gaps = 38/208 (18%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++NLSKR+ A++ +++ + +I LG NGAGKTT I +++G+L SG K+
Sbjct: 3 VRNLSKRYGKKT-ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG 61
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
DI+ + ++R +G P+ +L++ LTV E++
Sbjct: 62 KDIKKEPEEVKRRIGYLPEEPSLYENLTVRENL--------------------------- 94
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-G 181
LSGGM+++L++A A + +ILDEPTSG+DP SRR WELL + KK G
Sbjct: 95 ---------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEG 145
Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKL 209
+T++L++H ++EA+ L DR+AI+ G++
Sbjct: 146 KTILLSSHILEEAERLCDRVAILNNGRI 173
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 198 bits (506), Expect = 6e-64
Identities = 81/219 (36%), Positives = 129/219 (58%), Gaps = 3/219 (1%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++NL K++ AV G++ +I LG NGAGKTTTI ML +L +SG A +
Sbjct: 3 VENLVKKY-GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAG 61
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
HD+ + +RR +G+ Q ++ D+LT E+++ +++L VP + I ++ +G+
Sbjct: 62 HDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGL 121
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-- 180
L T SGGM+R+L +A + + + LDEPT G+DP +R +WE + K K+
Sbjct: 122 LEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF 181
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219
G T++LTTHYM+EA+ L DR+AII G++ G+ LK
Sbjct: 182 GMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 200 bits (511), Expect = 1e-63
Identities = 94/260 (36%), Positives = 141/260 (54%), Gaps = 18/260 (6%)
Query: 8 KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT 67
K + AV+G+N E ++ FLG NGAGKTTTI ML +L +SGTA++ +D+
Sbjct: 1 KVY-GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR 59
Query: 68 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRT 127
+ +RRS+G+ PQY ++ + LT E++ +L +PKD A+ ++ +
Sbjct: 60 EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD 119
Query: 128 SLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVIL 186
T SGGM+R+L +A + I + LDEPT+G+DP +RR+IW+ + K+ G T++L
Sbjct: 120 RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILL 179
Query: 187 TTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS-------FARGYYLSLD----MKSA 235
TTHYM+EAD L DRIAII G++ G+ LK SL M A
Sbjct: 180 TTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLKVEVSMLIA 239
Query: 236 -----QLQAEDIGLDGDRIR 250
L + +D DRI+
Sbjct: 240 ELGETGLGLLAVTVDSDRIK 259
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 151 bits (384), Expect = 1e-45
Identities = 66/211 (31%), Positives = 119/211 (56%), Gaps = 2/211 (0%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++NL+KR+ + A++G+++ + LG NGAGKTT + +L + P SSGT +I
Sbjct: 3 LENLTKRYGKKR-ALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG 60
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
D+ +RR +G PQ ++ TV E + + + LK +P + + ++ + +
Sbjct: 61 QDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNL 120
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
+ +LSGGM+R++ +A A +G +I+DEPT+G+DP R LL + + R
Sbjct: 121 GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDR 180
Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
VIL+TH +++ + L +++A++ GKL G
Sbjct: 181 IVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 150 bits (382), Expect = 2e-44
Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 5/223 (2%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
I+ ++K F + K AV+ ++ +I LG NGAGKTTT M++G+L + G
Sbjct: 5 IEGVTKSFGD-KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNG 63
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
+ I+ +G P+ L+ K+TVE+ + + ++LK +PK Q ++ + L I
Sbjct: 64 GPLSQ---EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEI 120
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KG 181
K+T LS G Q+K+ A I +ILDEP SG+DP + + + + + K +G
Sbjct: 121 VGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180
Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFAR 224
T+I ++H M+ + L DR+ ++ G+ G+ ++ SF +
Sbjct: 181 ATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGK 223
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 145 bits (369), Expect = 2e-42
Identities = 67/217 (30%), Positives = 114/217 (52%), Gaps = 6/217 (2%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+N+SKR+ K AV+ +N+ E + +G +G+GKTTT+ M+ ++ +SG I
Sbjct: 4 FENVSKRY-GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDG 62
Query: 63 HDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI--VD 119
DI D +RR +G Q LF LTV E++ +L K+ + ++ V
Sbjct: 63 EDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVG 122
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
L + LSGG Q+++ VA A +++DEP +DP +R+ + E + + +
Sbjct: 123 LDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQ 182
Query: 180 K--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
K G+T++ TH +DEA L DRIA++ AG++ +
Sbjct: 183 KELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDT 219
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 142 bits (361), Expect = 7e-42
Identities = 64/213 (30%), Positives = 114/213 (53%), Gaps = 1/213 (0%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+ +L+K + + AV ++ E +IT LG NGAGKTT + M+ +L SG I
Sbjct: 4 VTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDG 63
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
D D + +RR +GV L+ +LT E++ ++++L + + + I+ + L +
Sbjct: 64 VDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQL 123
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KG 181
S GM++K+++A A + ++LDEPTSG+D +RR + + + K +G
Sbjct: 124 LEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183
Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
R VI ++H M E + L DR+ ++ G++ GS
Sbjct: 184 RAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGS 216
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 138 bits (349), Expect = 2e-40
Identities = 62/207 (29%), Positives = 109/207 (52%), Gaps = 5/207 (2%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++N++KRF A++ ++ + + +I LG NGAGKTTTI M++G++ SG
Sbjct: 3 VENVTKRFGR-VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG 61
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
+ R +G P+ L+ K+ V + + + +QLK + K+ A+ I + L +
Sbjct: 62 KPLDIA---ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL 118
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KG 181
LS G Q+K+ A I +ILDEP SG+DP + + +++ + G
Sbjct: 119 SEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAG 178
Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGK 208
+TVIL+TH M+ + L DR+ ++ G+
Sbjct: 179 KTVILSTHQMELVEELCDRVLLLNKGR 205
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 136 bits (344), Expect = 2e-40
Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 54/208 (25%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
I+NLS R+ A++ +++ +I + +G NG+GK+T + + G+L +SG I
Sbjct: 2 IENLSFRYGGRT-ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60
Query: 63 HDI-RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
DI + + +RR +G PQ
Sbjct: 61 KDIAKLPLEELRRRIGYVPQ---------------------------------------- 80
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KK 180
LSGG ++++++A A + ++LDEPTSG+DP SR + ELL + ++
Sbjct: 81 -----------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE 129
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGK 208
GRTVI+ TH + A+L DR+ ++ GK
Sbjct: 130 GRTVIIVTHDPELAELAADRVIVLKDGK 157
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 137 bits (348), Expect = 3e-40
Identities = 58/208 (27%), Positives = 109/208 (52%), Gaps = 7/208 (3%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+L+K + K ++ ++++ + +I FLG NGAGKTTT+ +++G++ SG +
Sbjct: 3 TNDLTKTY-GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF-D 60
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
R +G + + LT E++ ++L + K E+ +++
Sbjct: 61 GKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRID-EVLDVVGLKDS 119
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-G 181
K+ S GM+++L +A+A +G +ILDEPT+G+DP + + EL++ + G
Sbjct: 120 AKKKVK---GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQG 176
Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKL 209
TV++++H + E + DRI II GKL
Sbjct: 177 ITVLISSHLLSEIQKVADRIGIINKGKL 204
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 135 bits (341), Expect = 7e-39
Identities = 70/217 (32%), Positives = 117/217 (53%), Gaps = 5/217 (2%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+N++KR+ GK AVN LN+ + + +G +G+GKTTT+ M+ ++ +SG I
Sbjct: 3 FENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDG 62
Query: 63 HDIR-TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI--VD 119
DIR D +RR +G Q LF +TVEE++ +L + PK+ + ++ V
Sbjct: 63 EDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVG 122
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
L + LSGG Q+++ VA A +++DEP +DP +R + E + +
Sbjct: 123 LDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQ 182
Query: 180 K--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
+ G+T++ TH +DEA L DRIAI+ G++ G+
Sbjct: 183 QELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGT 219
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 133 bits (337), Expect = 1e-38
Identities = 63/210 (30%), Positives = 117/210 (55%), Gaps = 4/210 (1%)
Query: 3 IQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
++NLS +P+G + A++ +++ + + +G NG+GK+T + +L G+L +SG +
Sbjct: 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61
Query: 62 NHDIR-TDMTTIRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
D+ + +RR +G+ Q + F TVEE + F + +P++ + + +
Sbjct: 62 GKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALEL 121
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
+G+ R TLSGG ++++++A ++LDEPT+G+DP RR + ELL K K
Sbjct: 122 VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 180 K-GRTVILTTHYMDEADLLGDRIAIIAAGK 208
G+T+I+ TH +D L DR+ ++ GK
Sbjct: 182 AEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 133 bits (336), Expect = 2e-38
Identities = 65/213 (30%), Positives = 112/213 (52%), Gaps = 4/213 (1%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++ LSK + A++ L++ + + LG +G GKTT + ++ G+ SG I
Sbjct: 3 LKGLSKTY-GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG 61
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
D+ T + RR++G+ Q ALF LTV E++ F +L+ VPK + + ++ +G+
Sbjct: 62 RDV-TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGL 120
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-- 180
+ LSGG Q+++++A A ++LDEP S +D R + E L + ++
Sbjct: 121 EGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL 180
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
G T I TH +EA L DRIA++ G++ G
Sbjct: 181 GITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 131 bits (332), Expect = 8e-38
Identities = 63/211 (29%), Positives = 113/211 (53%), Gaps = 4/211 (1%)
Query: 3 IQNLSKRFPNGK---LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
L+KRF + K AV+G++ ++T LG NGAGKTTT+ ML G+L +G A
Sbjct: 4 ADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT 63
Query: 60 IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
+ D+ + RR LG L+D+LT E++ +++ L + D + +
Sbjct: 64 VDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADR 123
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
LG+ S GM++K+++A A + ++LDEPT+G+D + R++ E + + +
Sbjct: 124 LGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR 183
Query: 180 K-GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
G+ ++ +TH M E + L DR+ ++ G++
Sbjct: 184 ALGKCILFSTHIMQEVERLCDRVVVLHRGRV 214
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 131 bits (330), Expect = 1e-36
Identities = 68/207 (32%), Positives = 121/207 (58%), Gaps = 2/207 (0%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+N+ KR+ + KL V+GL+ + + LG NGAGKTTT+ ML+G+ +G+ +
Sbjct: 10 FRNVEKRYGD-KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCG 68
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
+ + R+ +GV PQ++ L TV E++ + + + A+ + ++ +
Sbjct: 69 EPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL 128
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-YKKG 181
+K + LSGGM+R+L++A A + ++LDEPT+G+DP +R +WE L +G
Sbjct: 129 ENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARG 188
Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGK 208
+T++LTTH+M+EA+ L DR+ +I G+
Sbjct: 189 KTILLTTHFMEEAERLCDRLCVIEEGR 215
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 130 bits (328), Expect = 2e-36
Identities = 73/215 (33%), Positives = 121/215 (56%), Gaps = 12/215 (5%)
Query: 1 MAIQ--NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
+AI +SK + K+ VN L+ + LG NGAGK+T ML+GM+ G
Sbjct: 3 VAIDLVGVSKSY-GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 59 KIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
+ + + R ++GV PQ++ L + TV E++ + + ++ EI +I
Sbjct: 62 TVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG----MSTREIEAVIP 117
Query: 119 DLGIPHKRTSLANT----LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
L + S A+ LSGGM+R+L++A A I + +ILDEPT+G+DP++R IWE
Sbjct: 118 SLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER 177
Query: 175 LIK-YKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
L +G+T++LTTH+M+EA+ L DR+ ++ +G+
Sbjct: 178 LRSLLARGKTILLTTHFMEEAERLCDRLCVLESGR 212
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 128 bits (323), Expect = 3e-36
Identities = 76/234 (32%), Positives = 127/234 (54%), Gaps = 11/234 (4%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+NL+K + + VN +++ +I LG NGAGKTTT M++G++ SG + +
Sbjct: 7 AENLAKSY-KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD 65
Query: 63 HDIRTDMTTIRRS---LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ--LEISNMI 117
DI T + +R+ +G PQ ++F KLTVE+++ ++++ A+ E+ ++
Sbjct: 66 EDI-TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALL 124
Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
+ I H R S A +LSGG +R++ +A A + ++LDEP +GVDP + I +IK
Sbjct: 125 EEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR-IIK 183
Query: 178 YKKGRT--VILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV-FLKNSFARGYYL 228
+ K R V++T H + E + DR II+ GK+ GS + N R YL
Sbjct: 184 HLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVYL 237
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 127 bits (322), Expect = 4e-36
Identities = 61/218 (27%), Positives = 117/218 (53%), Gaps = 7/218 (3%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+NLS R+P K A+ +++ + + +G NG+GK+T + +L G+L +SG +
Sbjct: 6 AENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDG 65
Query: 63 HDIRT--DMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
D + + +R+ +G+ Q + LF TVE+ + F + +P++ + ++ +
Sbjct: 66 LDTSSEKSLLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENLGLPREEIEERVAEALE 124
Query: 119 DLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178
+G+ LSGG ++++++A G ++LDEPT+G+DP RR + ELL K
Sbjct: 125 LVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKL 184
Query: 179 KK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
K+ G+T+I+ TH ++ DR+ ++ GK+ G
Sbjct: 185 KEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 127 bits (322), Expect = 4e-36
Identities = 77/231 (33%), Positives = 131/231 (56%), Gaps = 7/231 (3%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+NLSKR+ + VNG++++ + +I LG NGAGKTTT M++G++ SG +
Sbjct: 3 AENLSKRY-GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDG 61
Query: 63 HDIRTDMTTIRRS-LGVC--PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
DI T + +R+ LG+ PQ ++F KLTVEE++ +++ + K + ++ ++ +
Sbjct: 62 QDI-TKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEE 120
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
I H R S A++LSGG +R++ +A A + ++LDEP +GVDP + + I +++ K
Sbjct: 121 FHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILK 180
Query: 180 -KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV-FLKNSFARGYYL 228
+G V++T H + E + DR II GK+ G+ N R YL
Sbjct: 181 DRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVYL 231
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 130 bits (328), Expect = 4e-36
Identities = 70/211 (33%), Positives = 118/211 (55%), Gaps = 4/211 (1%)
Query: 1 MAIQ--NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
+AI +SK + K VNGL+ + LG NGAGK+T M++GM +G
Sbjct: 40 VAIDLAGVSKSY-GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 59 KIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
+ + R +GV PQ++ L + TV E++ + + + + I +++
Sbjct: 99 TVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLE 158
Query: 119 DLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK- 177
+ K + + LSGGM+R+L++A A I + +ILDEPT+G+DP++R IWE L
Sbjct: 159 FARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL 218
Query: 178 YKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
+G+T++LTTH+M+EA+ L DR+ ++ AG+
Sbjct: 219 LARGKTILLTTHFMEEAERLCDRLCVLEAGR 249
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 127 bits (322), Expect = 2e-35
Identities = 62/207 (29%), Positives = 118/207 (57%), Gaps = 1/207 (0%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+ +L+K + A++ ++ + +I FLG NGAGK+TT+ ++ G LP SG+ ++
Sbjct: 5 VSSLTKLYGTQN-ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCG 63
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
D+ + ++R++G P++N L+ + V E++ F + + + L + + MI +G+
Sbjct: 64 EDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGL 123
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
++ LS G ++++ +A A I + +ILDEPT+G+DP I ++ K +
Sbjct: 124 RPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDK 183
Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKL 209
T+IL+TH M E + + DR+ II GK+
Sbjct: 184 TIILSTHIMQEVEAICDRVIIINKGKI 210
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 126 bits (319), Expect = 2e-35
Identities = 57/220 (25%), Positives = 109/220 (49%), Gaps = 16/220 (7%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ ++NLS + GK ++ L+ + + +IT LG NG+GK+T + L G+L SG +
Sbjct: 3 LEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61
Query: 61 YNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEE--------HMWFYSQLKQVPKDLAQL 111
DI + + + L PQ + LTV E H+ + + + +++ +
Sbjct: 62 DGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEE 121
Query: 112 EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
+ + G+ H + LSGG ++++ +A A + ++LDEPTS +D + +
Sbjct: 122 ALELL----GLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEV 177
Query: 172 WELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
ELL + +KG TV++ H ++ A D + ++ GK+
Sbjct: 178 LELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKI 217
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 124 bits (313), Expect = 5e-35
Identities = 71/209 (33%), Positives = 116/209 (55%), Gaps = 11/209 (5%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+NLSKRF + AVN +++ ++ + LG NGAGK+T + M+ G+L +SG
Sbjct: 3 TKNLSKRFGK-QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG 61
Query: 63 HD-IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
H R D+ +G + L++ LT E++ ++ L +P E+ N IVDL
Sbjct: 62 HPWTRKDL----HKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRID-EVLN-IVDLT 115
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KK 180
K+ A S GM+++L +A+A + + +ILDEPT+G+DP + + EL+ + ++
Sbjct: 116 NTGKKK--AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
G TVIL++H + E L D I II+ G L
Sbjct: 174 GITVILSSHILSEVQQLADHIGIISEGVL 202
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 122 bits (310), Expect = 2e-34
Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 14/229 (6%)
Query: 3 IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
++ L+K F G V G++++ +I + +G +G+GK+T + +++G+L SG I
Sbjct: 3 LRGLTKSF--GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60
Query: 62 NHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL--EISN 115
DI ++ +RR +G+ Q ALFD LTV E++ F L++ + + EI
Sbjct: 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFP--LREHTRLSEEEIREIVL 118
Query: 116 MIVDL-GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
++ G+ LSGGM++++++A A ++ DEPT+G+DP + I +L
Sbjct: 119 EKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178
Query: 175 LIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221
+ KK G T I+ TH +D A + DRIA++ GK+ G+ L+ S
Sbjct: 179 IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 125 bits (316), Expect = 3e-34
Identities = 65/222 (29%), Positives = 115/222 (51%), Gaps = 13/222 (5%)
Query: 1 MA---IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
MA ++N+ K F + + + +N++ + + LG +G GK+T + M+ G+ +SG
Sbjct: 1 MAELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 58 AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK---DLAQLEIS 114
I D+ TD+ +R + + Q AL+ +TV E++ F +L+ VPK D E++
Sbjct: 60 ILIDGRDV-TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 115 NMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
+ LG+ H LSGG ++++++A A + + +LDEP S +D R +
Sbjct: 119 KL---LGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSE 175
Query: 175 LIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
+ K + G T I TH EA L DRI ++ G++Q G+
Sbjct: 176 IKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGT 217
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 120 bits (304), Expect = 1e-33
Identities = 57/218 (26%), Positives = 111/218 (50%), Gaps = 11/218 (5%)
Query: 2 AIQNLSKRFPNGKL---AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
++NLSK + G A+ G++++ + + + +G +G+GK+T +++L G+ +SG
Sbjct: 2 ELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV 61
Query: 59 KIYNHDI----RTDMTTIRR-SLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI 113
++ DI ++ RR +G Q L LT E++ L VPK +
Sbjct: 62 RVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERA 121
Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
++ +G+ + + LSGG Q+++++A A + ++ DEPT +D + + + E
Sbjct: 122 EELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVME 181
Query: 174 LLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
LL + K G T+++ TH + A+ DRI + GK+
Sbjct: 182 LLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 121 bits (307), Expect = 1e-33
Identities = 70/224 (31%), Positives = 125/224 (55%), Gaps = 17/224 (7%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++ ++K F ++ ++G++++ +I + LG +G+GK+T + +++G+L G I
Sbjct: 11 VRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDG 69
Query: 63 HDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF-YSQLKQVPKDLAQLEISNMI 117
DI ++ IR+ +GV Q ALF LTV E++ F + ++P+ L + E+ M
Sbjct: 70 EDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIR-ELVLMK 128
Query: 118 VDL-GIP----HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172
++L G+ S LSGGM++++++A A + LDEPTSG+DP S I
Sbjct: 129 LELVGLRGAAADLYPS---ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVID 185
Query: 173 ELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
EL+ + G TVI+ TH +D + DR+A++A GK+ G+
Sbjct: 186 ELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 118 bits (298), Expect = 8e-33
Identities = 58/211 (27%), Positives = 112/211 (53%), Gaps = 9/211 (4%)
Query: 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
+ ++N+SK + G A+ ++++ E + + +G +G GK+T + ++ G+ +SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 58 AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
+ +T G Q +AL LTV +++ +L+ VPK A+ ++
Sbjct: 61 VLVDG----EPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELL 116
Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL-- 175
+G+ + + LSGGM++++++A A ++LDEP S +D +R + E L
Sbjct: 117 ELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLD 176
Query: 176 IKYKKGRTVILTTHYMDEADLLGDRIAIIAA 206
I + G+TV+L TH +DEA L DR+ +++A
Sbjct: 177 IWRETGKTVLLVTHDIDEAVFLADRVVVLSA 207
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 116 bits (294), Expect = 4e-32
Identities = 54/221 (24%), Positives = 113/221 (51%), Gaps = 14/221 (6%)
Query: 3 IQNLSKRFPNGKL---AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
++NLS FP G A++ ++ + + + +G +G+GK+T ++G+L +SG+
Sbjct: 4 VKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSII 63
Query: 60 IYNHDI----RTDMTTIRRSLGVCPQ--YNALFDKLTVEEHMW--FYSQLKQVPKDLAQL 111
D+ R R+ + + Q ++L ++T+ E + K K+ +
Sbjct: 64 FDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKE 123
Query: 112 EISNMIVDLGIPHKR-TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
+ ++V +G+P + + LSGG ++++++A A + +I DEPTS +D +
Sbjct: 124 AVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQ 183
Query: 171 IWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
I +LL ++ + G T++ TH + + DR+A++ AGK+
Sbjct: 184 ILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 116 bits (294), Expect = 5e-32
Identities = 61/222 (27%), Positives = 106/222 (47%), Gaps = 16/222 (7%)
Query: 2 AIQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
++ L+KRF G L A++ ++ + +I +G NGAGKTT +++ G L +SG+
Sbjct: 2 EVRGLTKRF--GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLF 59
Query: 61 YNHDIRTDMTTIRRSLGVCP--QYNALFDKLTVEE------HMW---FYSQLKQVPKDLA 109
DI LG+ Q LF +LTV E + ++
Sbjct: 60 DGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREERE 119
Query: 110 QLEISNMIVD-LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
E + +++ +G+ A LS G QR+L +A A + ++LDEP +G++P
Sbjct: 120 ARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEET 179
Query: 169 RSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+ EL+ + + +G TV+L H MD L DR+ ++ G++
Sbjct: 180 EELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRV 221
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 114 bits (288), Expect = 9e-32
Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 40/211 (18%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++N+SKR+ K +N +++N +I + LG +G+GK+T + + G+ SG+ I
Sbjct: 3 LKNVSKRY-GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDG 61
Query: 63 HDI---RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
D+ ++ +RR +G+ Q ALF LTV E +
Sbjct: 62 EDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLE-----------------------NIA 98
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IK 177
LG LSGG Q+++++A A ++LDEPTS +DP +RR + LL ++
Sbjct: 99 LG-----------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQ 147
Query: 178 YKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
+ G TV+L TH +DEA L DR+ ++ GK
Sbjct: 148 AQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 116 bits (292), Expect = 1e-31
Identities = 65/209 (31%), Positives = 111/209 (53%), Gaps = 5/209 (2%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++NLSK + KL L V + + LG G+GK+ + + G + SG +
Sbjct: 3 VENLSKDWKEFKLKNVSLEVERGDYFV--ILGPTGSGKSVLLETIAGFIKPDSGKILLNG 60
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
DI T++ +R + PQ ALF +TV +++ + + ++V K + ++ + LGI
Sbjct: 61 KDI-TNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGI 119
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-- 180
H TLSGG Q+++++A A + + ++LDEP S +D ++ + E L K +K
Sbjct: 120 DHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF 179
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
G TV+ TH +EA L D++AI+ GKL
Sbjct: 180 GVTVLHVTHDFEEAWALADKVAIMLNGKL 208
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 114 bits (287), Expect = 1e-31
Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 38/215 (17%)
Query: 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
++NLS + G+ ++ L+++ +I LG NGAGK+T + L G+L SSG +
Sbjct: 1 EVENLSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD 59
Query: 62 NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
D+ + + R + PQ L L
Sbjct: 60 GKDLASLSPKELARKIAYVPQALEL----------------------------------L 85
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
G+ H N LSGG ++++ +A A ++LDEPTS +D + + ELL + +
Sbjct: 86 GLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145
Query: 181 --GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
G+TV++ H ++ A DR+ ++ G++ G
Sbjct: 146 ERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 114 bits (287), Expect = 3e-31
Identities = 62/211 (29%), Positives = 108/211 (51%), Gaps = 5/211 (2%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
N++K +PNG A++G+N++ + +G +GAGK+T + ++ +SGT ++
Sbjct: 4 INVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQ 63
Query: 64 DI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
D+ + +RR +GV Q L V E++ F ++ VP + + +
Sbjct: 64 DVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALEL 123
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY- 178
+G+ HK +L LSGG Q+++++A A + +I DEPT +DP + I LL K
Sbjct: 124 VGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKIN 183
Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
K G TV++ TH + D R+ + GKL
Sbjct: 184 KAGTTVVVATHAKELVDTTRHRVIALERGKL 214
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 114 bits (287), Expect = 9e-31
Identities = 51/207 (24%), Positives = 105/207 (50%), Gaps = 7/207 (3%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
I+ +SK F + + +N++ + + + LG +G GK+T + ++ G+ +SG +
Sbjct: 6 IEGVSKSFGGVE-VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDG 64
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
+ T +G Q +AL LTV +++ +L+ K A+ ++ +G+
Sbjct: 65 RPV----TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGL 120
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKK 180
+ LSGGM++++++A A + ++LDEP +D +R + + L + +
Sbjct: 121 AGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET 180
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAG 207
+TV+L TH +DEA L DR+ +++
Sbjct: 181 RKTVLLVTHDVDEAVYLADRVVVLSNR 207
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 113 bits (285), Expect = 1e-30
Identities = 56/209 (26%), Positives = 107/209 (51%), Gaps = 4/209 (1%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+ LS R+ + A++ ++ + + LG NGAGK+T S+L + G +
Sbjct: 4 VAGLSFRY-GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG 62
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
HD+R LGV Q L L+V +++ +++ L + + A+ I+ ++ LG+
Sbjct: 63 HDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGL 122
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKK 180
+ L+GG +R++ +A A + ++LDEPT G+DP SR +I + + +
Sbjct: 123 AERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQ 182
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
G +V+ TH +DE + DR+ ++ G++
Sbjct: 183 GLSVLWATHLVDEIE-ADDRLVVLHRGRV 210
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 112 bits (283), Expect = 1e-30
Identities = 60/211 (28%), Positives = 107/211 (50%), Gaps = 5/211 (2%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
N+SK +P G A++ ++++ + + G +GAGKTT + +L G L S G +I
Sbjct: 4 FHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAG 63
Query: 63 HDIRT----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
D+ + +RR +GV Q L TV E++ +++ + Q + +
Sbjct: 64 EDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALR 123
Query: 119 DLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178
+G+ HK + LSGG Q+++++A A + ++ DEPT +DP I +LL +
Sbjct: 124 QVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRL 183
Query: 179 -KKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
K+G TVI+ TH + D + R+ I+ G+
Sbjct: 184 NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 110 bits (279), Expect = 2e-30
Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 41/208 (19%)
Query: 3 IQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+N+S +P K + +++ + + +G +G+GK+T + +L+ + +SG I
Sbjct: 3 FKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILID 62
Query: 62 NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
D+R D+ ++R+++ PQ LF T+ E
Sbjct: 63 GVDLRDLDLESLRKNIAYVPQDPFLFSG-TIRE--------------------------- 94
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
N LSGG ++++++A A + +ILDE TS +DP + I E L K
Sbjct: 95 ----------NILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK 144
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGK 208
G+TVI+ H + DRI ++ G+
Sbjct: 145 GKTVIVIAHRLSTIR-DADRIIVLDDGR 171
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 112 bits (282), Expect = 2e-30
Identities = 64/202 (31%), Positives = 107/202 (52%), Gaps = 16/202 (7%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTT---I 72
+ G+++ E +I + LG NGAGKTT + +MG+LP SG+ + DI T +
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDI-TGLPPHERA 73
Query: 73 RRSLGVCPQYNALFDKLTVEE--HMWFYSQLKQVPKDLAQLEISNMIVDLGIP---HKRT 127
R +G P+ +F +LTVEE + Y++ + K A+LE + +L P +R
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRK--ARLE---RVYEL-FPRLKERRK 127
Query: 128 SLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVIL 186
LA TLSGG Q+ L++A A + + ++LDEP+ G+ P I+E + + + G T++L
Sbjct: 128 QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILL 187
Query: 187 TTHYMDEADLLGDRIAIIAAGK 208
A + DR ++ G+
Sbjct: 188 VEQNARFALEIADRAYVLERGR 209
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 109 bits (275), Expect = 3e-29
Identities = 66/217 (30%), Positives = 123/217 (56%), Gaps = 10/217 (4%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++N+SK + G +A++G++++ E + + LG +G GKTT + ++ G +SG +
Sbjct: 3 LENVSKFY-GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDG 61
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI--VDL 120
DI T++ +R + Q ALF LTV E++ F +LK++PK + ++ + V L
Sbjct: 62 KDI-TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQL 120
Query: 121 -GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IK 177
G +++ S LSGG Q+++++A A + + ++LDEP +D R+ + L ++
Sbjct: 121 EGYANRKPS---QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQ 177
Query: 178 YKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
+ G T + TH +EA + DRIA++ GK+Q G+
Sbjct: 178 KELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 109 bits (274), Expect = 4e-29
Identities = 54/212 (25%), Positives = 108/212 (50%), Gaps = 5/212 (2%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+N+SK +P G+ A+ ++ + + + G +GAGK+T + ++ G + G +
Sbjct: 4 FENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNG 63
Query: 63 HDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
HD+ ++ +RR +GV Q L TV E++ ++ P + +S ++
Sbjct: 64 HDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLD 123
Query: 119 DLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178
+G+ HK +L + LSGG Q+++++A A + ++ DEPT +DP I L +
Sbjct: 124 LVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183
Query: 179 -KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+ G TV++ TH ++ + + R+ + G+L
Sbjct: 184 NRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 110 bits (276), Expect = 4e-29
Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 26/226 (11%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++NLSK +P G A+ +N+ + ++ + +G +GAGK+T + L G++ +SG
Sbjct: 6 VKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNG 65
Query: 63 HDIRT----DMTTIRRSLGVCPQYNALFDKLTVEE---------HMWFYSQLKQVPKD-- 107
I ++ +RR +G+ Q L +L+V E + S K+
Sbjct: 66 VQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDK 125
Query: 108 ---LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
L LE +GI K A+TLSGG Q+++++A A + + ++ DEP + +D
Sbjct: 126 AQALDALE------RVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179
Query: 165 PYSRRSIWELLIKY--KKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
P S + + ++L + G TVI+ H +D A DRI + AG+
Sbjct: 180 PESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 109 bits (274), Expect = 6e-29
Identities = 64/230 (27%), Positives = 100/230 (43%), Gaps = 29/230 (12%)
Query: 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
++ LSKRF G AVN +++ +I +G NGAGKTT +++ G SSGT
Sbjct: 6 EVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFR 64
Query: 62 NHDIRTDMTTIRRSLGVCP--QYNALFDKLTVEEHM------------------WFYSQL 101
DI LG+ Q LF LTV E++ +
Sbjct: 65 GRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEER 124
Query: 102 KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS 161
+ + LE +G+ A LS G QR+L +A A + ++LDEP +
Sbjct: 125 EARERARELLEF------VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAA 178
Query: 162 GVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
G++P + EL+ + + G T++L H M L DRI ++ G++
Sbjct: 179 GLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV 228
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 108 bits (273), Expect = 7e-29
Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 26/226 (11%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++NLSK +PNGK A+ ++++ + + +G +GAGK+T + L G++ +SG+ I
Sbjct: 3 VENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDG 62
Query: 63 HDIRT----DMTTIRRSLGVCPQYNALFDKLTVEE---------HMWFYSQLKQVPKD-- 107
DI + +RR +G+ Q L ++L+V E + S PK+
Sbjct: 63 TDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEK 122
Query: 108 ---LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
LA LE +G+ K A+ LSGG Q+++++A A + + ++ DEP + +D
Sbjct: 123 QRALAALE------RVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLD 176
Query: 165 PYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
P S R + +LL I ++G TVI++ H +D A DRI + G+
Sbjct: 177 PASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 109 bits (275), Expect = 3e-28
Identities = 64/217 (29%), Positives = 117/217 (53%), Gaps = 5/217 (2%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ I+N+SK F AV+ ++++ + + + LG +G GKTT + M+ G SSG +
Sbjct: 6 LEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILL 64
Query: 61 YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF-YSQLKQVPKDLAQLEISNMIVD 119
DI TD+ +R +G+ Q ALF +TVEE++ F K++ K + + +
Sbjct: 65 DGEDI-TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALEL 123
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY- 178
+G+ + LSGG Q+++++A A + + ++LDEP S +D R + + L +
Sbjct: 124 VGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQ 183
Query: 179 -KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
+ G T + TH +EA + DRIA++ G+++ G+
Sbjct: 184 RELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGT 220
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 109 bits (273), Expect = 6e-28
Identities = 56/205 (27%), Positives = 107/205 (52%), Gaps = 9/205 (4%)
Query: 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
GK VN ++ + +I +G +G+GK+TT+ ML ++ ++G I +I + +
Sbjct: 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENI-MKQSPV 63
Query: 73 ------RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR 126
R+ +G+ Q ALF +T+ ++ +L P+ + + ++ +G+
Sbjct: 64 ELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE 123
Query: 127 TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTV 184
+ LSGGMQ+++ +A A +++DE S +DP R S+ + L K + +T+
Sbjct: 124 HRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTI 183
Query: 185 ILTTHYMDEADLLGDRIAIIAAGKL 209
+ TH +DEA +GDRI I+ AG++
Sbjct: 184 VFITHDLDEAIRIGDRIVIMKAGEI 208
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 105 bits (265), Expect = 7e-28
Identities = 54/221 (24%), Positives = 110/221 (49%), Gaps = 12/221 (5%)
Query: 1 MAIQNLSKRFPNGKL---AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
+ ++N+SK + G A+ +N+ + + +G +G+GK+T +++L G+ +SG
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 58 AKIYNHDIRT----DMTTIRRS-LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE 112
I D+ ++ +RR +G Q L LTV E++ + +
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 113 ISNMIVDLGIPHKRTS-LANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
++ LG+ + + LSGG Q+++++A A I + ++ DEPT +D + + +
Sbjct: 122 AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEV 181
Query: 172 WELLIKY--KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
ELL + ++G+T+I+ TH + A DR+ + GK++
Sbjct: 182 LELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 106 bits (266), Expect = 9e-28
Identities = 55/224 (24%), Positives = 114/224 (50%), Gaps = 21/224 (9%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++NL+ + + + ++++ + +IT+ +G NGAGK+T + ++G+L SSG KI+
Sbjct: 7 VENLTVSY-GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFG 65
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDK---LTVEE--------HMWFYSQLKQVPKDLAQL 111
+R +R +G PQ + D+ +TV++ ++ +L + K+
Sbjct: 66 KPVRKRRKRLR--IGYVPQ-KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE---- 118
Query: 112 EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
++ + +G+ R LSGG ++++ +A A ++LDEP +GVD ++ I
Sbjct: 119 KVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEI 178
Query: 172 WELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
++LL + ++ G+TV++ TH + DR+ + L G
Sbjct: 179 YDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGP 221
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 104 bits (263), Expect = 1e-27
Identities = 58/224 (25%), Positives = 109/224 (48%), Gaps = 21/224 (9%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SS 55
+ +++L+ + K A+ ++++ + +IT+ +G +G GK+T + +L + +
Sbjct: 1 IELRDLNVYY-GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 56 GTAKIYNHDIRT---DMTTIRRSLGVCPQYNALFDKLTVEEHMWF-----YSQLKQVPKD 107
G + DI D+ +RR +G+ Q F ++ +++ + +LK+ +
Sbjct: 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPG-SIYDNVAYGLRLHGIKLKEELDE 118
Query: 108 LAQ--LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
+ L L K A LSGG Q++L +A A ++LDEPTS +DP
Sbjct: 119 RVEEALRK----AALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP 174
Query: 166 YSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
S I EL+ + KK T+++ TH M +A + DR A + G+L
Sbjct: 175 ISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 108 bits (273), Expect = 3e-27
Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 13/218 (5%)
Query: 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
NLS R+P+GK A++ LN+ Q+T+ +G +GAGK+T +++L+G L + G ++ D
Sbjct: 325 NLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGID 384
Query: 65 IRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFY------SQLKQVPKDLAQLEISNMI 117
+R R+ + Q N T+ E++ ++ LE
Sbjct: 385 LRDLSPEAWRKQISWVSQ-NPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVP-- 441
Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
G+ LSGG ++L++A A + + ++LDEPT+ +D + + I + L +
Sbjct: 442 KPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQE 501
Query: 178 YKKGRTVILTTHYMDEADLLG-DRIAIIAAGKLQCCGS 214
K +TV++ TH D DRI ++ G+L G+
Sbjct: 502 LAKQKTVLVITH--RLEDAADADRIVVLDNGRLVEQGT 537
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 103 bits (259), Expect = 5e-27
Identities = 50/222 (22%), Positives = 107/222 (48%), Gaps = 27/222 (12%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+++L+ + G + ++ + + +G NGAGK+T + ++G+L +SG+ +++
Sbjct: 2 VEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDK---LTVEE--------HMWFYSQLKQVPKDLAQL 111
+ + R+ +G PQ D+ ++V + H + +L + K
Sbjct: 61 KPLEKE----RKRIGYVPQ-RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVD- 114
Query: 112 EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
+ +G+ LSGG Q+++ +A A + ++LDEP +GVDP ++ I
Sbjct: 115 ---EALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDI 171
Query: 172 WELLIKYK-KGRTVILTTHYMDEADLLGDRIA-----IIAAG 207
+ELL + + +G T+++ TH + DR+ ++A+G
Sbjct: 172 YELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVASG 213
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 105 bits (263), Expect = 1e-26
Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 3/240 (1%)
Query: 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
++ + R AV ++ + +I FLG NGAGK+TT+ ML G+L +SG ++
Sbjct: 25 SLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVN 84
Query: 62 NHDIRTDMTTIRRSLG-VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
D RS+G V Q L+ L + + + ++P D + + L
Sbjct: 85 GKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEIL 144
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-- 178
+ LS G + + +A A + + + LDEPT G+D ++ +I E L +Y
Sbjct: 145 DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNE 204
Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSLDMKSAQLQ 238
++ TV+LTTH D+ L DR+ +I G+L G+ L+ F S+++K A+
Sbjct: 205 ERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELKQAKSL 264
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 103 bits (258), Expect = 2e-26
Identities = 70/239 (29%), Positives = 125/239 (52%), Gaps = 10/239 (4%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ ++ L+ + +G A+ G+N+N + ++T+ LG NGAGK+T L G+L SSG
Sbjct: 6 LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65
Query: 61 YNHDI---RTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
I R + +R S+G+ Q N LF +V + + F + ++P+D + + N
Sbjct: 66 DGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA-SVYQDVSFGAVNLKLPEDEVRKRVDN 124
Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
+ GI H + + LS G ++++++A + + ++LDEPT+G+DP I +LL
Sbjct: 125 ALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLL 184
Query: 176 IKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGK--LQCCGSSVFLKNSFARGYYLSL 230
++ +K G T+I+ TH +D L D + ++ G+ LQ VF + R L L
Sbjct: 185 VEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRL 243
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 101 bits (254), Expect = 3e-26
Identities = 66/214 (30%), Positives = 115/214 (53%), Gaps = 12/214 (5%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++N++KRF N A++ LN++ + + LG +G GKTTT+ M+ G+ +SG I
Sbjct: 3 LENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG 61
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD--- 119
D+ TD+ R + + Q AL+ +TV +++ F +L++VPKD EI + +
Sbjct: 62 RDV-TDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKD----EIDERVREVAE 116
Query: 120 -LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178
L I H LSGG ++++++ A + + ++DEP S +D R + L +
Sbjct: 117 LLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRL 176
Query: 179 KK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
++ G T I TH EA + DRIA++ G++Q
Sbjct: 177 QQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 103 bits (259), Expect = 3e-26
Identities = 59/229 (25%), Positives = 111/229 (48%), Gaps = 22/229 (9%)
Query: 3 IQNLSKRFPNGK---LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP-----VS 54
++NLS FP AV+G++ + +I +G +G+GK+ +MG+LP +
Sbjct: 4 VKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIV 63
Query: 55 SGTAKIYNHDI----RTDMTTIRRS-LGVCPQY--NALFDKLTVEEHMW--FYSQLKQVP 105
G D+ ++ IR + + Q +L +T+ + + K +
Sbjct: 64 GGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLS 123
Query: 106 KDLAQLEISNMIVDLGIPHKRTSL---ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162
K A+ ++ +GIP L + LSGGM++++ +AMA + +I DEPT+
Sbjct: 124 KKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTA 183
Query: 163 VDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+D + I +LL ++ +KG +IL TH + + DR+A++ AG++
Sbjct: 184 LDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRI 232
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 101 bits (254), Expect = 5e-26
Identities = 57/200 (28%), Positives = 101/200 (50%), Gaps = 10/200 (5%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTT---I 72
A+ G+++ +I + LG NGAGKTT + +MG++ SG DI T +
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI-TGLPPHERA 76
Query: 73 RRSLGVCPQYNALFDKLTVEEH--MWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA 130
R + P+ +F +LTVEE+ + Y++ + ++ E+ + L +R A
Sbjct: 77 RLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLK--ERRNQRA 134
Query: 131 NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILTT 188
TLSGG Q+ L++A A + + ++LDEP+ G+ P I+E + + +K G T++L
Sbjct: 135 GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVE 194
Query: 189 HYMDEADLLGDRIAIIAAGK 208
A + DR ++ G+
Sbjct: 195 QNARFALEIADRGYVLENGR 214
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 100 bits (251), Expect = 9e-26
Identities = 57/216 (26%), Positives = 114/216 (52%), Gaps = 9/216 (4%)
Query: 3 IQNLSKRFPNGKL---AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
++N+SK F + A+ ++++ + +I +G +GAGK+T I + G+ +SG+
Sbjct: 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63
Query: 60 IYNHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
+ D+ ++ RR +G+ Q+ L TV E++ ++ VPK + +
Sbjct: 64 VDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLE 123
Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
++ +G+ K + LSGG ++++ +A A + ++ DE TS +DP + +SI LL
Sbjct: 124 LLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL 183
Query: 176 --IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
I + G T++L TH M+ + DR+A++ G++
Sbjct: 184 RDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 99.2 bits (247), Expect = 4e-25
Identities = 63/215 (29%), Positives = 115/215 (53%), Gaps = 5/215 (2%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
+NL+K + G+ V +++ +I LG NGAGKTTT M++G++P +G I +
Sbjct: 7 KNLAKAY-KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDE 65
Query: 64 DIR--TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ-VPKDLAQLEISNMIVDL 120
DI RR +G PQ ++F +L+V +++ Q++ + + + + ++ +
Sbjct: 66 DISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEF 125
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK- 179
I H R S+ +LSGG +R++ +A A + ++LDEP +GVDP S I ++ +
Sbjct: 126 HIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD 185
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
G V++T H + E + +R I++ G L G+
Sbjct: 186 SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGT 220
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 98.1 bits (245), Expect = 4e-25
Identities = 60/211 (28%), Positives = 108/211 (51%), Gaps = 12/211 (5%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
I+N+S + G ++ L+++ Y +I + G NGAGKTT +L G++ SSG+ +
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL-- 59
Query: 63 HDIRTDMTTIRRSLGVCPQ---YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
+ R+S+G Q Y D +V E + LK++ Q ++ D
Sbjct: 60 NGKPIKAKERRKSIGYVMQDVDYQLFTD--SVREEL--LLGLKELDAGNEQ--AETVLKD 113
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-Y 178
L + + +LSGG +++L++A A + G +I DEPTSG+D + + EL+ +
Sbjct: 114 LDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA 173
Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+G+ VI+ TH + + DR+ ++A G +
Sbjct: 174 AQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 97.7 bits (244), Expect = 8e-25
Identities = 56/216 (25%), Positives = 106/216 (49%), Gaps = 13/216 (6%)
Query: 8 KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP---VSSGTAKIYNHD 64
K + +N ++++ Q+ + LG +G+GKTT + + G + +SG
Sbjct: 14 KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73
Query: 65 IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIV---DL 120
+ D ++ + Q + L LTV E + + + L+ A + V DL
Sbjct: 74 RKPD--QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL 131
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-K 179
+ +L +SGG +R++S+A+ + + +ILDEPTSG+D ++ ++ L + +
Sbjct: 132 ALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR 191
Query: 180 KGRTVILTTHYMDEADL--LGDRIAIIAAGKLQCCG 213
+ R VILT H +DL L DRI ++++G++ G
Sbjct: 192 RNRIVILTIH-QPRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 99.9 bits (250), Expect = 4e-24
Identities = 53/218 (24%), Positives = 106/218 (48%), Gaps = 12/218 (5%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ ++ +SK F G A++G+++ ++ + LG NGAGK+T + +L G+ P SG I
Sbjct: 9 LELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE--I 65
Query: 61 YNHDIRTDMTTIRRSL----GVCPQYNALFDKLTVEEHMWFYSQLKQVPK--DLAQLEI- 113
++ R +L Q +L L+V E+++ + + D +
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125
Query: 114 -SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172
++ LG+ +L LS ++ + +A A +R +ILDEPT+ + ++
Sbjct: 126 ARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF 185
Query: 173 ELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+L+ + K +G +I +H +DE + DRI ++ G++
Sbjct: 186 DLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRV 223
Score = 78.7 bits (195), Expect = 8e-17
Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 12/185 (6%)
Query: 37 GAGKTTTISMLMGMLPVSSGTAKIYNH--DIRTDMTTIRRSLGVCP---QYNALFDKLTV 91
GAG+T L G P SSG + IR+ I+ + P + L +++
Sbjct: 295 GAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSI 354
Query: 92 EEHMWF-----YSQLKQVPKDLAQLEISNMIVDLGI-PHKRTSLANTLSGGMQRKLSVAM 145
E++ +S+ + + + I L I TLSGG Q+K+ +A
Sbjct: 355 AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLAR 414
Query: 146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMDEADLLGDRIAII 204
+ +ILDEPT G+D ++ I+ L+ + +G+ +++ + + E L DRI ++
Sbjct: 415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVM 474
Query: 205 AAGKL 209
G++
Sbjct: 475 REGRI 479
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 98.1 bits (245), Expect = 4e-24
Identities = 58/217 (26%), Positives = 118/217 (54%), Gaps = 10/217 (4%)
Query: 3 IQNLSKRFPNGK----LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
++N+SK F A++ +++ + +I +G++GAGK+T + ++ + +SG+
Sbjct: 4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63
Query: 59 KIYNHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS 114
+ D+ ++ +R+ +G+ Q+ L TV E++ F +L VPK + ++
Sbjct: 64 FVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVA 123
Query: 115 NMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
++ +G+ K LSGG ++++++A A + ++ DE TS +DP + +SI EL
Sbjct: 124 ELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILEL 183
Query: 175 L--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
L I + G T++L TH M+ + DR+A++ G+L
Sbjct: 184 LKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRL 220
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 99 bits (250), Expect = 6e-24
Identities = 59/237 (24%), Positives = 111/237 (46%), Gaps = 15/237 (6%)
Query: 3 IQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+N+S R+ P+ + L++ + + +G +G+GK+T + +L+G+ G +
Sbjct: 474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533
Query: 62 NHDI-RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF------YSQLKQVPKDL-AQLEI 113
D+ D+ ++RR +G Q LF ++ E++ ++ + + A I
Sbjct: 534 GVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFI 592
Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
N+ +G LSGG +++L++A A + + ++LDE TS +DP + I +
Sbjct: 593 ENL--PMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQ 650
Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSL 230
L++ +GRTVI+ H DRI ++ GK+ GS L G Y L
Sbjct: 651 NLLQILQGRTVIIIAHR-LSTIRSADRIIVLDQGKIVEQGSHEELLAQ--GGLYARL 704
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 95.5 bits (238), Expect = 7e-24
Identities = 58/212 (27%), Positives = 104/212 (49%), Gaps = 3/212 (1%)
Query: 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
++++L KR A+ G++ + +I F+G NGAGKTTT+ +L G+L +SG ++
Sbjct: 22 SLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVA 81
Query: 62 NHDIRTDMTTIRRSLG-VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
R +G V Q L+ L V + + + + +P + + + L
Sbjct: 82 GLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELL 141
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
+ + LS G + + +A A + + LDEPT G+D ++ +I L +Y +
Sbjct: 142 DLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR 201
Query: 181 GR--TVILTTHYMDEADLLGDRIAIIAAGKLQ 210
R TV+LT+HYM + + L R+ +I G+L
Sbjct: 202 ERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 95.4 bits (238), Expect = 1e-23
Identities = 59/234 (25%), Positives = 115/234 (49%), Gaps = 12/234 (5%)
Query: 3 IQNLSKRFPNGKL---AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
++NLS + GK A+N +++ + +G +G+GK+T +L G+ SSG+
Sbjct: 6 VRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSIL 65
Query: 60 IYNHDI--RTDMTTIRRSLGVCPQ--YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
+ + + R + + Q Y++L + TV + L+ +Q I+
Sbjct: 66 LDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQRIAE 123
Query: 116 MIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
++ +G+P + LSGG ++++++A A I + +ILDEPTS +D + I L
Sbjct: 124 LLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNL 183
Query: 175 LIKYKKGR--TVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGY 226
L++ KK R T + +H + + + DRIA++ G++ G + L + + Y
Sbjct: 184 LLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPY 237
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 95.1 bits (237), Expect = 1e-23
Identities = 65/229 (28%), Positives = 117/229 (51%), Gaps = 30/229 (13%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++NLSK +PNGK A+ +N+N + + +G +GAGK+T + + ++ SSG+ +
Sbjct: 4 VENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEG 63
Query: 63 HDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHM----------------WFYSQLK 102
DI + +RR +G+ Q+ L ++LTV E++ F + K
Sbjct: 64 TDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDK 123
Query: 103 QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162
+ + L+ LE +G+ K A+ LSGG Q+++++A A ++ DEP +
Sbjct: 124 E--RALSALE------RVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIAS 175
Query: 163 VDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+DP + + + + L I + G TVI+ H +D A DRI + AG++
Sbjct: 176 LDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 96.5 bits (240), Expect = 2e-23
Identities = 65/216 (30%), Positives = 117/216 (54%), Gaps = 9/216 (4%)
Query: 3 IQNLSKRFPNGKLAVNGL-NVNFY--EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ N++K F G + L NV+ + QI +G +GAGK+T I + + +SG+
Sbjct: 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI 63
Query: 60 IYNHDIRT----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
+ D+ T ++T RR +G+ Q+ L TV ++ +L PKD + +++
Sbjct: 64 VDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTE 123
Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
++ +G+ K S + LSGG ++++++A A + ++ DE TS +DP + +SI ELL
Sbjct: 124 LLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL 183
Query: 176 --IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
I + G T++L TH MD + D +A+I+ G+L
Sbjct: 184 KEINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 95.1 bits (237), Expect = 3e-23
Identities = 62/214 (28%), Positives = 111/214 (51%), Gaps = 11/214 (5%)
Query: 11 PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI----- 65
P + A+ +NV+ + +GH G+GK+T + L G+L +SGT I I
Sbjct: 17 PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKK 76
Query: 66 RTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP 123
+ +R+ +G+ Q+ + LF++ TVE+ + F V ++ A+ + MI +G+P
Sbjct: 77 NKKLKPLRKKVGIVFQFPEHQLFEE-TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLP 135
Query: 124 HK-RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KK 180
+ LSGG R++++A ++LDEPT+G+DP R+ + E+ K +K
Sbjct: 136 EELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEK 195
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
G T +L TH M++A D+I ++ G + G+
Sbjct: 196 GLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 94.7 bits (236), Expect = 3e-23
Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 28/228 (12%)
Query: 3 IQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
++N+S +PN A+ ++ E + + LGHNG+GK+T +L G+L SG KI
Sbjct: 10 VENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKID 69
Query: 62 NHDIRTD-MTTIRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
I + + IR+ +G+ Q + F TVE+ + F + K+VP ++ ++I D
Sbjct: 70 GITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPK----KMKDIIDD 125
Query: 120 L----GI-------PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
L G+ P LSGG ++++++A +I DE TS +DP +
Sbjct: 126 LAKKVGMEDYLDKEPQN-------LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGK 178
Query: 169 RSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
R I +++ ++ + +T+I TH MDEA +L D++ + + GKL G
Sbjct: 179 REIKKIMVDLRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGK 225
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 93.3 bits (233), Expect = 5e-23
Identities = 62/223 (27%), Positives = 117/223 (52%), Gaps = 17/223 (7%)
Query: 3 IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
I+NLSK F G V G++++ + ++ +G +G+GK+T + L G+ SG+ +
Sbjct: 5 IKNLSKSF--GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD 62
Query: 62 NHDI--RTDMTTIRRSLGVCPQ-YNALFDKLTVEEH-----MWFYSQLKQVPKDLAQLEI 113
D+ + D+ +RR +G+ Q +N LF LTV E+ + +K++ K A+ +
Sbjct: 63 GEDVGDKKDILKLRRKVGMVFQQFN-LFPHLTVLENVTLAPVK----VKKLSKAEAREKA 117
Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
++ +G+ K + LSGG Q+++++A A + ++ DEPTS +DP + +
Sbjct: 118 LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177
Query: 174 LLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
++ + G T+I+ TH M A + DR+ + GK+ G
Sbjct: 178 VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPP 220
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 93.2 bits (232), Expect = 1e-22
Identities = 60/211 (28%), Positives = 111/211 (52%), Gaps = 7/211 (3%)
Query: 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
+L +P+G A+ G+N + ++ + LG NGAGK+T G+L +SG I
Sbjct: 6 DLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEP 65
Query: 65 IRTD---MTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
I+ D + +R+++G+ Q + LF TVEE + F + K+ + + +
Sbjct: 66 IKYDKKSLLEVRKTVGIVFQNPDDQLFAP-TVEEDVAFGPLNLGLSKEEVEKRVKEALKA 124
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY- 178
+G+ + LSGG ++++++A ++LDEPTSG+DP I +LL
Sbjct: 125 VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN 184
Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
K+G T+I++TH +D + D++ +++ GK+
Sbjct: 185 KEGITIIISTHDVDLVPVYADKVYVMSDGKI 215
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 90.7 bits (226), Expect = 2e-22
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 30/184 (16%)
Query: 7 SKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR 66
S +GK + ++ ++T+ +G +GAGK+T ++ L G + ++ +
Sbjct: 15 SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74
Query: 67 TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR 126
D + R+ +G PQ + L LTV E + F ++L+
Sbjct: 75 LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRG----------------------- 111
Query: 127 TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVI 185
LSGG ++++S+A+ + + LDEPTSG+D S + LL + GRT+I
Sbjct: 112 ------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTII 165
Query: 186 LTTH 189
+ H
Sbjct: 166 CSIH 169
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 95.3 bits (238), Expect = 2e-22
Identities = 60/213 (28%), Positives = 110/213 (51%), Gaps = 7/213 (3%)
Query: 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI- 60
++ ++KRFP G +A + ++++ + +I + LG NGAGK+T + +L G+ SG ++
Sbjct: 6 EMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVD 64
Query: 61 -YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK-DLAQL--EISNM 116
I++ IR +G+ Q+ L LTV E++ + + D Q I +
Sbjct: 65 GKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKEL 124
Query: 117 IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
G+P + LS G Q+++ + A G+R +ILDEPT+ + P ++E+L
Sbjct: 125 SERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILR 184
Query: 177 KYKK-GRTVILTTHYMDEADLLGDRIAIIAAGK 208
+ G+T+I TH + E + DR+ ++ GK
Sbjct: 185 RLAAEGKTIIFITHKLKEVMAIADRVTVLRRGK 217
Score = 57.9 bits (141), Expect = 1e-09
Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 21/226 (9%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+++LS + G AV ++ +I G G G++ + + G+ +SG +
Sbjct: 260 VEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNG 319
Query: 63 HDIRTDMTT---IRRSLGVCP---QYNALFDKLTVEEHMWFYSQLKQVP----------- 105
D+ ++ R L P + L L++ E++ K+
Sbjct: 320 KDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAI 379
Query: 106 KDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
+ A+ I V P A +LSGG Q+KL +A +I +PT G+D
Sbjct: 380 RKFARELIEEFDVRAPSPDAP---ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDV 436
Query: 166 YSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
+ I E L++ + G+ V+L + +DE L DRIA+I G++
Sbjct: 437 GAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 88.1 bits (219), Expect = 3e-22
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 41 TTTISMLMGMLPVSSGTAKIYNHDIRTDMTT--IRRSLGVCPQYNALFDKLTVEEHMWFY 98
+T + ++ G+L +SGT + D + +R+ +GV Q LF +LTV E+++F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 99 SQLKQVPKDLAQLEISNMIVDLGIPHKR-TSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157
+ A + +G+P TLSGG ++++++A A + + ++LD
Sbjct: 61 -----LRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLD 115
Query: 158 EPTS 161
EPT+
Sbjct: 116 EPTA 119
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 91.0 bits (227), Expect = 3e-22
Identities = 59/204 (28%), Positives = 107/204 (52%), Gaps = 22/204 (10%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTT---I 72
+ G+++ + ++T LG NG GKTT + LMG+LPV SG+ ++ DI T +
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDI-TKLPPHERA 73
Query: 73 RRSLGVCPQYNALFDKLTVEEHMW-----FYSQLKQVPKDLAQL--EISNMIVDLGIPHK 125
R + PQ +F +LTVEE++ + +++P ++ +L + M+ +
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEML------GR 127
Query: 126 RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRT 183
R LSGG Q++L++A A + + ++LDEPT G+ P + I ++ ++ + G
Sbjct: 128 R---GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA 184
Query: 184 VILTTHYMDEADLLGDRIAIIAAG 207
++L Y+D A L DR ++ G
Sbjct: 185 ILLVEQYLDFARELADRYYVMERG 208
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 91.0 bits (226), Expect = 4e-22
Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 7/203 (3%)
Query: 10 FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-D 68
GK + ++V F I + +G +GAGK+T I ++ ++ + G+ I DI+T D
Sbjct: 12 SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTID 71
Query: 69 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTS 128
+ +RR +G+ Q LF+ TV++++ + LK + +E IV L + T
Sbjct: 72 VIDLRRKIGMVFQQPHLFEG-TVKDNIEYGPMLKG--EKNVDVEYYLSIVGLNKEY-ATR 127
Query: 129 LANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI--KYKKGRTVIL 186
LSGG +++S+A ++LDEPTS +DP S I EL++ K K TVI
Sbjct: 128 DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIW 187
Query: 187 TTHYMDEADLLGDRIAIIAAGKL 209
TH M++A +GD A + G L
Sbjct: 188 ITHNMEQAKRIGDYTAFLNKGIL 210
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 93.2 bits (232), Expect = 4e-22
Identities = 56/207 (27%), Positives = 107/207 (51%), Gaps = 7/207 (3%)
Query: 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI----RTDMT 70
+ VN +++ E +I +G +G+GK+T + +L ++ + G + DI ++
Sbjct: 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELR 101
Query: 71 TIRR-SLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL 129
+RR + + Q AL TV E++ F +++ VPK + + +G+
Sbjct: 102 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKY 161
Query: 130 ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILT 187
N LSGGMQ+++ +A A +++DE S +DP R + + L++ + +T++
Sbjct: 162 PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFI 221
Query: 188 THYMDEADLLGDRIAIIAAGKLQCCGS 214
TH +DEA +GDRIAI+ G++ G+
Sbjct: 222 THDLDEALRIGDRIAIMKDGEIVQVGT 248
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 90.8 bits (226), Expect = 7e-22
Identities = 61/207 (29%), Positives = 112/207 (54%), Gaps = 9/207 (4%)
Query: 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI----RTDMT 70
+ VN ++++ E +I +G +G+GK+T + + ++ +SG I DI R ++
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
Query: 71 TIRR-SLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-GIPHKRTS 128
+RR + + Q AL TV E++ F +++ VP+ + E + ++L G+
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPR-AEREERAAEALELVGLEGWEHK 156
Query: 129 LANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVIL 186
+ LSGGMQ+++ +A A +++DE S +DP RR + + L++ + +T++
Sbjct: 157 YPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVF 216
Query: 187 TTHYMDEADLLGDRIAIIAAGKLQCCG 213
TH +DEA LGDRIAI+ G+L G
Sbjct: 217 ITHDLDEALRLGDRIAIMKDGRLVQVG 243
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 90.4 bits (225), Expect = 7e-22
Identities = 63/233 (27%), Positives = 115/233 (49%), Gaps = 37/233 (15%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSSGT 57
+ I+NL+ + K A+ +N++ ++Q+T+ +G +G GK+T +++ + ++P
Sbjct: 2 IEIENLNLFY-GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60
Query: 58 AKIY--NHDI---RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE 112
K+ DI + D+ +RR +G+ Q F ++ +++ + +L + KD +L+
Sbjct: 61 GKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPM-SIYDNIAYGPRLHGI-KDKKELD 118
Query: 113 ISNMIVDLGIPHKRTSL----------------ANTLSGGMQRKLSVAMAFIGGSRTVIL 156
IV SL A LSGG Q++L +A A ++L
Sbjct: 119 ---EIV-------EESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLL 168
Query: 157 DEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
DEPTS +DP + I EL+ + KK T+++ TH M +A + DR A G+L
Sbjct: 169 DEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGEL 221
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 90.2 bits (224), Expect = 9e-22
Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 25/233 (10%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISML--MGML--PVSSG 56
+ + +LS + N K A+N ++++FY ++IT+ +G +G+GK+T + + M L V+
Sbjct: 6 LQVSDLSVYY-NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTIT 64
Query: 57 TAKIYN-HDI---RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK---------- 102
+ +YN H+I RTD +R+ +G+ Q F +++ E++ + +LK
Sbjct: 65 GSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDE 123
Query: 103 QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162
V K L I + + D + A LSGG Q+++ +A + ++LDEPTS
Sbjct: 124 AVEKSLKGASIWDEVKD-----RLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSA 178
Query: 163 VDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
+DP S I E L+ K T++L T M +A + DR G L +
Sbjct: 179 LDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDT 231
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 93.0 bits (232), Expect = 1e-21
Identities = 57/243 (23%), Positives = 117/243 (48%), Gaps = 19/243 (7%)
Query: 3 IQNLSKRFPNGKLAVNGL-NVNF--YEDQITSFLGHNGAGKTTTISMLMGMLP----VSS 55
++NL+ F V + +V+F +I +G +G+GK+T LMG+LP ++S
Sbjct: 8 VENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITS 67
Query: 56 GTAKIYNHDI----RTDMTTIR-RSLGVCPQ--YNALFDKLTVEEHMWFYSQLKQ-VPKD 107
G + D+ +M +R + + + Q +L +T+ + + +L +
Sbjct: 68 GEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRA 127
Query: 108 LAQLEISNMIVDLGIPHK--RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
A+ ++ +G+P R + LSGGM++++ +AMA + +I DEPT+ +D
Sbjct: 128 EARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDV 187
Query: 166 YSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFA 223
++ I +LL ++ + G V+ TH + L DR+ ++ G++ G + + ++
Sbjct: 188 TTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQ 247
Query: 224 RGY 226
Y
Sbjct: 248 HPY 250
Score = 91.1 bits (227), Expect = 5e-21
Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 37/241 (15%)
Query: 3 IQNLSKRFPNGK----------LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP 52
++NLSKR+ + K AV+ ++ + E + +G +G+GK+T +L G+LP
Sbjct: 283 VRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP 342
Query: 53 VSSGTAKIYNHDIRTDMTTIR-RSLGVCPQ------YNALFDKLTVEE---------HMW 96
SSG+ D D+T R L Q Y++L ++TV +
Sbjct: 343 PSSGSIIFDGQD--LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG 400
Query: 97 FYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156
++ + +L +L V L + LSGG ++++++A A + +IL
Sbjct: 401 SGAERRARVAELLEL------VGLPPEF-LDRYPHELSGGQRQRVAIARALALEPKLLIL 453
Query: 157 DEPTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
DEP S +D + + LL ++ G T + +H + + DR+A++ G++ G
Sbjct: 454 DEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP 513
Query: 215 S 215
+
Sbjct: 514 T 514
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 88.7 bits (220), Expect = 3e-21
Identities = 57/214 (26%), Positives = 113/214 (52%), Gaps = 4/214 (1%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
I N+SKRF + + A++ +N+ + + LG +G+GK+T + ++ G+ SG ++
Sbjct: 3 IANISKRFGSFQ-ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNG 61
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
D T + R +G Q+ ALF LTV +++ F ++++ PK + + ++ + +
Sbjct: 62 QDA-TRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQL 120
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI--WELLIKYKK 180
N LSGG ++++++A A + ++LDEP +D R+ + W + +
Sbjct: 121 EGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV 180
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
T + TH +EA + DRI +++ GK++ GS
Sbjct: 181 HVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGS 214
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 86.7 bits (216), Expect = 3e-21
Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 51/208 (24%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++ ++KRF K A++G++++ ++ + LG NGAGK+T + +L G+ SG I
Sbjct: 3 LRGITKRFGGVK-ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE--ILV 59
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
+ R + GI
Sbjct: 60 DGKEVSFASPRDAR------------------------------------------RAGI 77
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-G 181
++ LS G ++ + +A A +R +ILDEPT+ + P +++++ + + G
Sbjct: 78 -----AMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQG 132
Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKL 209
VI +H +DE + DR+ ++ G++
Sbjct: 133 VAVIFISHRLDEVFEIADRVTVLRDGRV 160
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 88.1 bits (219), Expect = 6e-21
Identities = 58/216 (26%), Positives = 109/216 (50%), Gaps = 10/216 (4%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ I+N+SK + K+ ++ ++++ + ITS +G NGAGK+T +SM+ +L SG I
Sbjct: 2 ITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60
Query: 61 YNHDI-RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF----YSQLKQVPKDLAQLEISN 115
++ T + + L + Q N + +LTV + + F YSQ + +D + I+
Sbjct: 61 DGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKED--RRIINE 118
Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
I L + + LSGG +++ +AM + V+LDEP + +D I ++L
Sbjct: 119 AIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKIL 178
Query: 176 IKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+ G+T+++ H ++ A D I + GK+
Sbjct: 179 RRLADELGKTIVVVLHDINFASCYSDHIVALKNGKV 214
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 90.8 bits (226), Expect = 7e-21
Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 20/190 (10%)
Query: 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+N+SK + G+L + L+ + +G NGAGK+T + +L G L SGT K+
Sbjct: 323 EFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG 382
Query: 62 NHDIRTDMTTIRRSLGVCPQ-YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
+G Q + L TV E + + D + E+ +
Sbjct: 383 ET----------VKIGYFDQHRDELDPDKTVLEELS------EGFPDGDEQEVRAYLGRF 426
Query: 121 GIPHKR-TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
G + LSGG + +L +A + ++LDEPT+ +D S ++ E L+ +
Sbjct: 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF- 485
Query: 180 KGRTVILTTH 189
+G TV+L +H
Sbjct: 486 EG-TVLLVSH 494
Score = 73.1 bits (180), Expect = 7e-15
Identities = 46/209 (22%), Positives = 86/209 (41%), Gaps = 28/209 (13%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++NLS + + L + +++ + +G NGAGK+T + +L G L SG
Sbjct: 6 LENLSLAYGDRPL-LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64
Query: 63 ---------HDIRTDMTTIRRSL--GVCPQYNAL--FDKLTVEEHMWFYSQLKQVPKDLA 109
T+ + G L ++ L ++ L
Sbjct: 65 GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLE 124
Query: 110 QL-------EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162
+L ++ LG P + ++ +LSGG +R++++A A + ++LDEPT+
Sbjct: 125 ELDGWTLEARAEEALLGLGFPDEDRPVS-SLSGGWRRRVALARALLEEPDLLLLDEPTNH 183
Query: 163 VDPYSRRSIW--ELLIKYKKGRTVILTTH 189
+D S W + L +Y TVI+ +H
Sbjct: 184 LDLESIE--WLEDYLKRYP--GTVIVVSH 208
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 90.6 bits (225), Expect = 8e-21
Identities = 61/226 (26%), Positives = 115/226 (50%), Gaps = 20/226 (8%)
Query: 3 IQNLSKRF---PNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
++N+SKR+ G + AV+ +++ E +I +G +GAGKTT ++ G+L +SG
Sbjct: 282 VRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV 341
Query: 59 KIYNHDIRTDMTTIR--------RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ 110
+ D DMT R +G+ Q L+ TV +++ L ++P +LA+
Sbjct: 342 NVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELAR 400
Query: 111 LEISNMIVDLGIPHKRT-----SLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
++ + +G ++ + LS G + ++++A I R VILDEPT +DP
Sbjct: 401 MKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDP 460
Query: 166 YSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
++ + ++K ++ +T I+ +H MD + DR A++ GK+
Sbjct: 461 ITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI 506
Score = 49.8 bits (119), Expect = 5e-07
Identities = 54/258 (20%), Positives = 106/258 (41%), Gaps = 52/258 (20%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM------------ 50
++NL+K+F +GK + ++ E ++ LG +GAGK+ + +L GM
Sbjct: 3 VKNLTKKF-DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIY 61
Query: 51 --------------------LPVSSGTAKIYNHDI----RTDMTTIRRSLGVCPQYN-AL 85
PV GT + D IR+ + + Q AL
Sbjct: 62 HVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFAL 121
Query: 86 FDKLTVEE------HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQR 139
+ TV + Y + V + + +E+ + H+ T +A LSGG ++
Sbjct: 122 YGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL------SHRITHIARDLSGGEKQ 175
Query: 140 KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK--YKKGRTVILTTHYMDEADLL 197
++ +A + DEPT +DP + + + L + G +++LT+H+ + + L
Sbjct: 176 RVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDL 235
Query: 198 GDRIAIIAAGKLQCCGSS 215
D+ + G+++ G+
Sbjct: 236 SDKAIWLENGEIKEEGTP 253
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 90.2 bits (224), Expect = 1e-20
Identities = 54/215 (25%), Positives = 104/215 (48%), Gaps = 8/215 (3%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ +N+S +P K + ++ + + + +G +G+GK+T I +L+ + +SG I
Sbjct: 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388
Query: 61 YNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNM 116
DIR + ++R+ +G+ Q LF T+ E++ + +++ + L
Sbjct: 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEALKLANAHEF 447
Query: 117 IVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
I +L G LSGG +++L++A A + +ILDE TS +D + I +
Sbjct: 448 IANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDA 507
Query: 175 LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
L K KGRT ++ H + DRI ++ G++
Sbjct: 508 LKKLLKGRTTLIIAHRLSTI-KNADRIIVLDNGRI 541
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 86.9 bits (215), Expect = 2e-20
Identities = 55/214 (25%), Positives = 117/214 (54%), Gaps = 14/214 (6%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSSGTAKI-YNHD----IRT 67
A+ +N++ E+++T+ +G +G GK+T T+++++ M+P T ++ YN +
Sbjct: 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86
Query: 68 DMTTIRRSLGVC-----PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
D+ +R+++G+ P ++FD + + K++ +++ + + ++ + +
Sbjct: 87 DLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKL-QEIVEKSLKDVALWDEV 145
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
+ + A +LSGG Q++L +A A +++DEPTS +DP S R I EL++K K+
Sbjct: 146 KDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKY 205
Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 216
T+++ TH M +A + D+ A G+L C +
Sbjct: 206 TIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 87.5 bits (217), Expect = 2e-20
Identities = 61/244 (25%), Positives = 117/244 (47%), Gaps = 22/244 (9%)
Query: 11 PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG---------TAKIY 61
P A++ +N F + + + +G G+GK+T I + +L ++G T K
Sbjct: 17 PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTK 76
Query: 62 NHDIRTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
+ IR +R+ +G+ Q+ + LF+ TVE + F + ++ D + +++D
Sbjct: 77 DKYIRP----VRKRIGMVFQFPESQLFED-TVEREIIFGPKNFKMNLDEVKNYAHRLLMD 131
Query: 120 LGIPHKRTSLAN-TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--I 176
LG S + +SGG RK+++ ++LDEPT+G+DP S+R + LL +
Sbjct: 132 LGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL 191
Query: 177 KYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL--QCCGSSVFLKNSFARGYYLSLDMKS 234
+ + +T+IL +H M+E D + ++ G + Q +F +++ L +
Sbjct: 192 QTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIGLP-EI 250
Query: 235 AQLQ 238
QLQ
Sbjct: 251 VQLQ 254
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 85.2 bits (211), Expect = 2e-20
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 7/191 (3%)
Query: 10 FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI---R 66
+P G + GLN ++ + LG NGAGK+T + L G+L SG I + R
Sbjct: 1 YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR 60
Query: 67 TDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH 124
+ R+ +G+ Q + LF V++ + F + + + + + +G
Sbjct: 61 KGLLERRQRVGLVFQDPDDQLFAA-DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASG 119
Query: 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRT 183
R + LSGG ++++++A A ++LDEPT+G+DP R + +L + + +G T
Sbjct: 120 LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMT 179
Query: 184 VILTTHYMDEA 194
V+++TH +D A
Sbjct: 180 VVISTHDVDLA 190
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 87.4 bits (217), Expect = 2e-20
Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 28/236 (11%)
Query: 3 IQNLS----KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
I+NL+ + P K A++ +N+ + + +GH G+GK+T I L G+L +SG
Sbjct: 5 IENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI 64
Query: 59 KIYNHDI---RTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDL--AQL 111
I DI + ++ IR+ +G+ QY LF++ T+E+ + F P +L ++
Sbjct: 65 IIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE-TIEKDIAFG------PINLGLSEE 117
Query: 112 EISN-----M-IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
EI N M IV L + LSGG +R++++A + +ILDEPT+G+DP
Sbjct: 118 EIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177
Query: 166 YSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG--SSVF 217
R I + + + T+IL +H M++ L DRI ++ GK + G VF
Sbjct: 178 KGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 88.1 bits (218), Expect = 3e-20
Identities = 59/230 (25%), Positives = 112/230 (48%), Gaps = 9/230 (3%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
I +L + ++ L++ ++ + +G +G GKTT + + G + + T +I
Sbjct: 8 IDHLRVAY-GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAI 66
Query: 63 HDIRTDMTTI---RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
D D+T +R L + Q ALF L VE+++ F + +++PK +++ +
Sbjct: 67 AD--RDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKL 124
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
+G+ L LSGGMQ+++++A A ++LDEP S +D R ++ E +
Sbjct: 125 VGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH 184
Query: 180 K---GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGY 226
+ T++ TH D+A L D+ I+ G+L G L ++ A G+
Sbjct: 185 EELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGF 234
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 84.4 bits (210), Expect = 3e-20
Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 38/179 (21%)
Query: 37 GAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC-----PQYNALFDKLTV 91
G G+T L G+ P +SG + + G+ + L L+V
Sbjct: 36 GNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSV 95
Query: 92 EEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGS 151
E++ +L++ LSGG Q+K+ +A
Sbjct: 96 AENI--------------------------------ALSSLLSGGNQQKVVLARWLARDP 123
Query: 152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
R +ILDEPT GVD ++ I+ L+ + G+ V+L + +DE L DRI ++ G++
Sbjct: 124 RVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 85.0 bits (211), Expect = 3e-20
Identities = 59/215 (27%), Positives = 103/215 (47%), Gaps = 13/215 (6%)
Query: 5 NLSKRFPNGKLAVNGLNVNF-YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
L +L L ++F +++T G +GAGK+T + + G+ GT + N
Sbjct: 1 MLCVDI-EKRLPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL-NG 58
Query: 64 ------DIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
+ ++ +R +G+ Q ALF L V E++ F + K+ +D ++ ++
Sbjct: 59 TVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVD--ELL 116
Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
LG+ H LSGG ++++++A A ++LDEP S +D R + L +
Sbjct: 117 DLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQ 176
Query: 178 YKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
KK VI TH + EA+ L DRI ++ G+LQ
Sbjct: 177 IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 85.5 bits (212), Expect = 4e-20
Identities = 59/222 (26%), Positives = 118/222 (53%), Gaps = 10/222 (4%)
Query: 1 MAIQ--NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
M+I+ N+SKRF + A++ ++++ ++ + LG +G+GKTT + ++ G+ SGT
Sbjct: 1 MSIEVRNVSKRFGDFV-ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 59 KIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
D TD+ R++G Q+ ALF +TV +++ F ++K + + EI +
Sbjct: 60 LFGGEDA-TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVH 118
Query: 119 DLGIPHKRTSLAN----TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI--W 172
+L + LA+ LSGG ++++++A A + ++LDEP +D R+ + W
Sbjct: 119 ELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW 178
Query: 173 ELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
+ + T + TH +EA + DR+ ++ G+++ G+
Sbjct: 179 LRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 85.5 bits (212), Expect = 7e-20
Identities = 59/226 (26%), Positives = 112/226 (49%), Gaps = 23/226 (10%)
Query: 3 IQNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
+ N +K F G K A+NGL++ E + +G NGAGK+T ++ + G L +SG
Sbjct: 4 LSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI 63
Query: 59 KIYNHDIRTDMTTIRRSLGVCPQYN----ALFDKLTVEEHM----------WFYSQLKQV 104
I D+ T + +R+ + + +LT+EE++ S L +
Sbjct: 64 LIDGVDV-TKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNER 122
Query: 105 PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
+ + ++ + LG+ ++ + LSGG ++ LS+ MA + + ++LDE T+ +D
Sbjct: 123 RRSSFRERLA--RLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
Query: 165 PYSRRSIWELLIKY--KKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
P + + EL K + T ++ TH M++A G+R+ ++ +GK
Sbjct: 181 PKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGK 226
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 87.1 bits (216), Expect = 7e-20
Identities = 62/217 (28%), Positives = 114/217 (52%), Gaps = 23/217 (10%)
Query: 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD-----IRTDM 69
L V+ +++ E +I +G +G+GK+T + + G+ PVS G+ + + D D
Sbjct: 38 LGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDA 97
Query: 70 TTIRR----SLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK----DLA--QLEISNMIVD 119
T+RR + + Q AL TVEE++ F +++ +PK QLE+
Sbjct: 98 ATLRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLEL------ 151
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
+G+ LSGGMQ+++ +A AF + +++DEP S +DP R + + L++ +
Sbjct: 152 VGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQ 211
Query: 180 K--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
+T++ +H +DEA +G+RIAI+ G++ G+
Sbjct: 212 SKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGT 248
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 87.8 bits (218), Expect = 8e-20
Identities = 52/215 (24%), Positives = 110/215 (51%), Gaps = 9/215 (4%)
Query: 2 AIQNLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
++N+S +P + A+ N+ + + + LG +G+GK+T + +L G G+ +
Sbjct: 338 ELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITL 397
Query: 61 YNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ---LKQVPKDLAQLEISNM 116
+I + D +R ++ V Q LF T+ +++ + +++ L Q+ + +
Sbjct: 398 NGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANPDASDEELWAALQQVGLEKL 456
Query: 117 IVDLGIP-HKRTSLAN-TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
+ + LSGG +R+L++A A + + +LDEPT G+DP + R + L
Sbjct: 457 LESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516
Query: 175 LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
L ++ +G+T+++ TH + + + DRI ++ GK+
Sbjct: 517 LFEHAEGKTLLMVTHRLRGLERM-DRIIVLDNGKI 550
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 85.2 bits (211), Expect = 1e-19
Identities = 64/236 (27%), Positives = 118/236 (50%), Gaps = 27/236 (11%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-----DMT 70
A+ +N+ + T+F+GH G+GK+T + +L G+ + G+ ++ + I + D+
Sbjct: 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81
Query: 71 TIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTS 128
IR+ +G+ Q+ + LF++ TV + + F Q V ++ A+ + +GI S
Sbjct: 82 QIRKKVGLVFQFPESQLFEE-TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE---S 137
Query: 129 LANT----LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-YKKGRT 183
L LSGG R++++A + ++LDEPT+G+DP R+ + L K ++ G T
Sbjct: 138 LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMT 197
Query: 184 VILTTHYMDEADLLGDRIAIIAAGKLQCCG--SSVFLKNSFARGYYLSLDMKSAQL 237
++L TH MD+ D + ++ GKL G +F F ++ QL
Sbjct: 198 IVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQDVDF---------LEEKQL 244
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 84.4 bits (210), Expect = 1e-19
Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 18/225 (8%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+NLS R G+ ++ +++ ++ + LG NGAGK+T + L G L SG ++
Sbjct: 5 ARNLSVRL-GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNG 63
Query: 63 HDIRTDMTTIR--RSLGVCPQYNAL-FDKLTVEE--HMWFYSQLKQVPKDLAQLEISNMI 117
+ D + R V PQ+++L F TVEE M + L ++ +
Sbjct: 64 RPL-ADWSPAELARRRAVLPQHSSLSFP-FTVEEVVAMGRAP-HGLSRAEDDAL-VAAAL 119
Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFI------GGSRTVILDEPTSGVDPYSRRSI 171
+ + H LSGG Q+++ +A G R ++LDEPTS +D + +
Sbjct: 120 AQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHV 179
Query: 172 WELLIKY--KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
L + ++G VI+ H ++ A DRI ++ G+L G+
Sbjct: 180 LRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 85.9 bits (213), Expect = 1e-19
Identities = 56/221 (25%), Positives = 113/221 (51%), Gaps = 13/221 (5%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
I N+ KRF A++ ++++ ++ + LG +GAGK+T + ++ G+ +G N
Sbjct: 5 INNVKKRFGAFG-ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI-RLN 62
Query: 63 HDIRTDMTTIR---RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
+ D++ + R +G Q+ ALF +TV +++ F ++++ A EI + +
Sbjct: 63 GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEA--EIRARVEE 120
Query: 120 LGIPHKRTSLANT----LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI--WE 173
L + LA+ LSGG ++++++A A + ++LDEP +D R+ + W
Sbjct: 121 LLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWL 180
Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
+ + G T + TH +EA L DR+ ++ G+++ G
Sbjct: 181 RKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 85.9 bits (213), Expect = 2e-19
Identities = 57/216 (26%), Positives = 112/216 (51%), Gaps = 4/216 (1%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
++I N+ KRF A+ ++++ + + LG +G GKTT + ++ G+ ++GT
Sbjct: 5 LSIDNIRKRF-GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQ 63
Query: 61 YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
DI T + +R G+ Q ALF LTV +++ + + + + + ++ ++ +
Sbjct: 64 GGRDI-TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV 122
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI-WELL-IKY 178
G+P LSGG Q+++++A A ++LDEP S +D R + E+ ++
Sbjct: 123 GLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR 182
Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
+ G T I+ TH +EA + DRI ++ G ++ G+
Sbjct: 183 RLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGT 218
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 85.2 bits (211), Expect = 2e-19
Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 7/187 (3%)
Query: 33 LGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92
LG +G GKTT + +L G SG+ + D+ T++ R + + Q ALF +TVE
Sbjct: 2 LGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV-TNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 93 EHMWFYSQLKQVPKDLAQLEISNMI--VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGG 150
E++ F ++++VP+ + + + V L R + LSGG Q+++++A A +
Sbjct: 61 ENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRK--PHQLSGGQQQRVALARALVFK 118
Query: 151 SRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
+ ++LDEP S +D R + L I+ + G T + TH +EA + DRIAI+ GK
Sbjct: 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGK 178
Query: 209 LQCCGSS 215
+ G+
Sbjct: 179 IAQIGTP 185
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 83.7 bits (208), Expect = 2e-19
Identities = 57/221 (25%), Positives = 112/221 (50%), Gaps = 14/221 (6%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML-PVSS---- 55
+ +++L+ + K A+ +N++ ++++T+ +G +G GK+T + L M +
Sbjct: 8 IEVRDLNL-YYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVE 66
Query: 56 GTAKIYNHDI---RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQL 111
G + +I + D+ +RR +G+ Q F ++ +++ + +L + K+L ++
Sbjct: 67 GEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPM-SIYDNVAYGLRLHGIKDKELDEI 125
Query: 112 -EISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
E S L + + A LSGG Q++L +A A +++DEPTS +DP S
Sbjct: 126 VESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIST 185
Query: 169 RSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
I EL+ + KK T+++ TH M +A + D A G+L
Sbjct: 186 LKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGEL 226
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 86.2 bits (214), Expect = 3e-19
Identities = 46/196 (23%), Positives = 95/196 (48%), Gaps = 13/196 (6%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+S +P + A+ ++ + + +G +GAGK+T +++L+G + + G+ +
Sbjct: 324 FSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNG 383
Query: 63 HDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFY------SQLKQVPKDLAQLEISN 115
+ D + R + PQ+ LF T+ E++ +++++ L + +
Sbjct: 384 VPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARPDASDAEIREA---LERAGLDE 439
Query: 116 MIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
+ L G+ LSGG ++L++A AF+ + ++LDEPT+ +D + + E
Sbjct: 440 FVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLE 499
Query: 174 LLIKYKKGRTVILTTH 189
L +GRTV+L TH
Sbjct: 500 ALRALAQGRTVLLVTH 515
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 83.7 bits (207), Expect = 3e-19
Identities = 54/208 (25%), Positives = 105/208 (50%), Gaps = 7/208 (3%)
Query: 3 IQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+ +LS + + A+ +++ ++ LG +G GKTT ++++ G + S G+ ++
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQL- 64
Query: 62 NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
+ R + R GV Q AL L V +++ F QL+ + K + M+ +G
Sbjct: 65 -NGRRIEGPGAER--GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVG 121
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK- 180
+ LSGGM++++ +A A + ++LDEP +D +R + ELL+ +
Sbjct: 122 LEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE 181
Query: 181 -GRTVILTTHYMDEADLLGDRIAIIAAG 207
G+ V+L TH ++EA L R+ +++ G
Sbjct: 182 TGKQVLLITHDIEEALFLATRLVVLSPG 209
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 82.6 bits (205), Expect = 4e-19
Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 39/227 (17%)
Query: 5 NLSKRFPNGK-LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
N+S +PN + A++ +++ + + +G G+GK+T + +L G+ +SG+ +
Sbjct: 7 NVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGT 66
Query: 64 DIRT-DMTTIRRSLGVCPQYNALF-----DKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
DIR D +RR++G PQ LF D +T+ + D L + +
Sbjct: 67 DIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLG---------APLADDERILRAAELA 117
Query: 118 VDLGIPHKRTSLANT---------------LSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162
G+ T N LSGG ++ +++A A + ++LDEPTS
Sbjct: 118 ---GV----TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSA 170
Query: 163 VDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+D S + E L + +T+I+ TH DL+ DRI ++ +G++
Sbjct: 171 MDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLV-DRIIVMDSGRI 216
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 84.9 bits (210), Expect = 5e-19
Identities = 67/216 (31%), Positives = 121/216 (56%), Gaps = 16/216 (7%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ I+NL+K F +G+ AV+ +++ Y+ +I + LG +G GK+T + ML G ++G +
Sbjct: 20 LEIRNLTKSF-DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML 78
Query: 61 YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD- 119
D+ + + +R + + Q ALF +TVE+++ F LKQ L + EI++ + +
Sbjct: 79 DGVDL-SHVPPYQRPINMMFQSYALFPHMTVEQNIAF--GLKQ--DKLPKAEIASRVNEM 133
Query: 120 LGIPH-----KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR-RSIWE 173
LG+ H KR + LSGG ++++++A + + ++LDEP +D R R E
Sbjct: 134 LGLVHMQEFAKRKP--HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE 191
Query: 174 LL-IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
++ I + G T ++ TH +EA + RIAI+ GK
Sbjct: 192 VVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGK 227
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 82.3 bits (204), Expect = 6e-19
Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 7/193 (3%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+N++ + K + +N + + + +G GAGKTT I++LM G I
Sbjct: 5 FENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDG 64
Query: 63 HDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNMIV 118
DIR ++R +GV Q LF T+ E++ + ++V + + + I+
Sbjct: 65 IDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIM 123
Query: 119 DL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
L G LS G ++ L++A A + + +ILDE TS +D + + I E L
Sbjct: 124 KLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALE 183
Query: 177 KYKKGRTVILTTH 189
K KGRT I+ H
Sbjct: 184 KLMKGRTSIIIAH 196
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 81.8 bits (203), Expect = 7e-19
Identities = 56/218 (25%), Positives = 111/218 (50%), Gaps = 18/218 (8%)
Query: 3 IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
I+NL K F G V G+++ + ++ +G +G+GK+T + + + SGT I
Sbjct: 3 IKNLHKSF--GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 62 NHDI---RTDMTTIRRSLG-VCPQYNALFDKLTVEEH-----MWFYSQLKQVPKDLAQLE 112
+ + ++ +R+ +G V Q+N LF LTV E+ + +K + K A+
Sbjct: 61 GLKLTDDKKNINELRQKVGMVFQQFN-LFPHLTVLENITLAPIK----VKGMSKAEAEER 115
Query: 113 ISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172
++ +G+ K + LSGG Q+++++A A + ++ DEPTS +DP +
Sbjct: 116 ALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVL 175
Query: 173 ELLIKY-KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+++ ++G T+++ TH M A + DR+ + G++
Sbjct: 176 DVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 82.9 bits (204), Expect = 8e-19
Identities = 62/234 (26%), Positives = 120/234 (51%), Gaps = 15/234 (6%)
Query: 11 PNGKLAVNGL---NVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-- 65
PN A L ++ + T+ +GH G+GK+T + L G+L + G + + +
Sbjct: 13 PNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSS 72
Query: 66 ---RTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
+ ++ +R+ +GV Q+ + LF++ TV + + F Q +PK+ A+ + + +
Sbjct: 73 TSKQKEIKPVRKKVGVVFQFPESQLFEE-TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMV 131
Query: 121 GIPHKRTSLAN-TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-Y 178
G+ + + LSGG R++++A ++LDEPT+G+DP +R + +L +
Sbjct: 132 GLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH 191
Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG--SSVFLKNSFARGYYLSL 230
+ G+TV+L TH MD+ D + ++ G + CG S VF + F + + L +
Sbjct: 192 QSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGV 245
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 83.0 bits (205), Expect = 1e-18
Identities = 55/238 (23%), Positives = 106/238 (44%), Gaps = 24/238 (10%)
Query: 1 MAIQNLSKRF----PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG 56
+ ++NL F N +A+N ++ F +++I +G++G+GK+T ++ G++ G
Sbjct: 22 LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYG 81
Query: 57 TAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM 116
T ++ + I + F +L M F Q+ KD + +I
Sbjct: 82 TIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFG 141
Query: 117 IVDLGIP----HKRTS-------LANT--------LSGGMQRKLSVAMAFIGGSRTVILD 157
V LG+ K L ++ LSGG +R++++A +I D
Sbjct: 142 PVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFD 201
Query: 158 EPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
EPT+G+DP + +L++ K +TV + TH M+ + D + ++ GK+ G+
Sbjct: 202 EPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 81.7 bits (202), Expect = 2e-18
Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 5/199 (2%)
Query: 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIR 73
+ ++ N + Q TS +GHNG+GK+T +++G+ V SG N I + +R
Sbjct: 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLR 82
Query: 74 RSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANT 132
+ +G+ Q + F V+ + F + VP D +S + + + + N
Sbjct: 83 KHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNA 142
Query: 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHY 190
LSGG ++++++A +ILDE TS +DP +R+++ +L+ +K + T+I TH
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
Query: 191 MDEADLLGDRIAIIAAGKL 209
+ EA + D + ++ G +
Sbjct: 203 LSEA-MEADHVIVMNKGTV 220
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 81.1 bits (201), Expect = 2e-18
Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 15/224 (6%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++ LS F +G A+N L++ ++ +G NGAGKTT + ++ G G+
Sbjct: 5 LEGLSVSF-DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGG 63
Query: 63 HDI-RTDMTTIRRSLGVCPQYNA--LFDKLTVEEHM---------WFYSQLKQVPKDLAQ 110
D+ I R G+ ++ +F+ LTV E++ F S ++ +
Sbjct: 64 TDLTGLPEHQIAR-AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKD 122
Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
I ++ +G+ + LA LS G ++ L + M + + ++LDEP +G+
Sbjct: 123 -RIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEK 181
Query: 171 IWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
ELL +V++ H M+ + D++ ++ G + GS
Sbjct: 182 TAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 82.8 bits (205), Expect = 3e-18
Identities = 52/202 (25%), Positives = 98/202 (48%), Gaps = 25/202 (12%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+++LS +P ++G++++ + + LG +G+GK+T ++ L G+L G +
Sbjct: 337 LRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDG 396
Query: 63 HDIRT-DMTTIRRSLGVCPQYNALFDKLTV------------EEHMWFYSQLKQVPKDLA 109
+ + D +RR + VC Q LFD TV +E +W L
Sbjct: 397 VPVSSLDQDEVRRRVSVCAQDAHLFDT-TVRENLRLARPDATDEELW---------AALE 446
Query: 110 QLEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
++ +++ + L G+ LSGG +++L++A A + + ++LDEPT +D +
Sbjct: 447 RVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAET 506
Query: 168 RRSIWELLIKYKKGRTVILTTH 189
+ E L+ GRTV+L TH
Sbjct: 507 ADELLEDLLAALSGRTVVLITH 528
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 80.1 bits (198), Expect = 5e-18
Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 15/224 (6%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
+NLS G+ ++G++++ ++ + LG NGAGK+T + L G L SG +
Sbjct: 5 ENLSYSL-AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGV 63
Query: 64 DIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWF----YSQLKQVPKDLAQLEISNMIV 118
+ + + R V PQ ++L TV+E + + ++ +D +
Sbjct: 64 PLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAAT 123
Query: 119 DLGIPHKRTSLANTLSGGMQRKLSVAMAF------IGGSRTVILDEPTSGVDPYSRRSIW 172
DL TLSGG Q+++ +A + R + LDEPTS +D +
Sbjct: 124 DLS--GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL 181
Query: 173 ELLIKY-KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
L + ++G V+ H ++ A DRI ++ G++ GS
Sbjct: 182 RLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 79.4 bits (196), Expect = 7e-18
Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 19/217 (8%)
Query: 3 IQNLSKRF----PNGKL--AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG 56
+++LSK F G + +++ + + G +GAGK+T + L SG
Sbjct: 4 VEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSG 63
Query: 57 TAKIYNHDIRTDMTTI---------RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD 107
+ + D+ R+++G Q+ + +++ E + + VP++
Sbjct: 64 RILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPRE 123
Query: 108 LAQLEISNMIVDLGIPHKRTSLA-NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
A+ ++ L IP + L T SGG Q+++++A FI ++LDEPT+ +D
Sbjct: 124 AARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEA--DLLGDRI 201
+R+ + E LI K R L + DE +L+ DR+
Sbjct: 184 NRQVVVE-LIAEAKARGAALIGIFHDEEVRELVADRV 219
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 78.9 bits (195), Expect = 9e-18
Identities = 56/222 (25%), Positives = 114/222 (51%), Gaps = 19/222 (8%)
Query: 2 AIQNLSKRFPNGKL---AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
+I+NL+ + +G L + +N+ +I G +G+GKTT ++++ G+ V G+
Sbjct: 3 SIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL 62
Query: 59 KIYNHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ--VPKDLAQLE 112
K+ ++ ++ +RR++G Q + L LT +++ +L+ ++ +
Sbjct: 63 KVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERA 122
Query: 113 ISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172
+ M+ +G+ + LSGG ++++++A A + + V+ DEPT+ +D S R +
Sbjct: 123 RA-MLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVV 181
Query: 173 ELLIKYKK--GRTVILTTH---YMDEADLLGDRIAIIAAGKL 209
EL+ K + G T+++ TH +D A DRI + GKL
Sbjct: 182 ELMQKLAREQGCTILIVTHDNRILDVA----DRIVHMEDGKL 219
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 79.3 bits (196), Expect = 9e-18
Identities = 50/233 (21%), Positives = 101/233 (43%), Gaps = 20/233 (8%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+ +S F G A+N L+ + ++ +G NGAGKTT + ++ G G
Sbjct: 8 LDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG 66
Query: 63 HDIRTDMTTIRRS-LGVCPQYNA--LFDKLTVEEHM----------W--FYSQLKQVPKD 107
T + R + G+ ++ +F+ LTV E++ + +++L+ +
Sbjct: 67 DTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERR 126
Query: 108 LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
I ++ +G+ +R LA LS G ++ L + M + ++LDEP +G+
Sbjct: 127 ----RIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAE 182
Query: 168 RRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
ELL ++++ H M + D++ ++ G + GS ++N
Sbjct: 183 TEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 79.3 bits (196), Expect = 1e-17
Identities = 49/213 (23%), Positives = 90/213 (42%), Gaps = 16/213 (7%)
Query: 12 NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-RTDMT 70
NGK + L+ + + +G NGAGKTT +S+L G P SSG + + +
Sbjct: 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETI 101
Query: 71 -TIRRSLGVCPQYNALFDKLTVEEHM-------WFYSQ--LKQVPKDLAQLEISNMIVDL 120
+R+ +G+ + L ++ V E + +F S ++ ++ L
Sbjct: 102 FELRKRIGLVS--SELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELL 159
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-- 178
G H +LS G QR++ +A A + +ILDEP G+D +R + L +
Sbjct: 160 GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAA 219
Query: 179 -KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
++ TH+ +E ++ G++
Sbjct: 220 SPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 78.3 bits (193), Expect = 1e-17
Identities = 50/194 (25%), Positives = 98/194 (50%), Gaps = 7/194 (3%)
Query: 20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79
++ F + +IT+ +G +G+GK+T ++++ G SG I D+ T R + +
Sbjct: 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDV-TAAPPADRPVSML 75
Query: 80 PQYNALFDKLTVEEH--MWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGM 137
Q N LF LTVE++ + LK +D + I + +G+ L LSGG
Sbjct: 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAED--RQAIEVALARVGLAGLEKRLPGELSGGE 133
Query: 138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILTTHYMDEAD 195
++++++A + ++LDEP + +DP R + +L++ + TV++ TH ++A
Sbjct: 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAK 193
Query: 196 LLGDRIAIIAAGKL 209
L R+ + G++
Sbjct: 194 RLAQRVVFLDNGRI 207
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 80.8 bits (199), Expect = 1e-17
Identities = 62/240 (25%), Positives = 121/240 (50%), Gaps = 12/240 (5%)
Query: 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR----TDMT 70
L V ++ E +I +G +G+GK+T + +L ++ + G I DI ++
Sbjct: 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101
Query: 71 TIRRS-LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL 129
+RR + + Q AL +TV ++ F +L + + + + + + +G+ + S
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY 161
Query: 130 ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILT 187
+ LSGGM++++ +A A +++DE S +DP R + + L+K K RT++
Sbjct: 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI 221
Query: 188 THYMDEADLLGDRIAIIAAGKLQCCGSSVFL----KNSFARGYYLSLDMKSAQLQAEDIG 243
+H +DEA +GDRIAI+ G++ G+ + N + R ++ +D+ S A+DI
Sbjct: 222 SHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDI-SQVFSAKDIA 280
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 79.1 bits (195), Expect = 1e-17
Identities = 59/233 (25%), Positives = 111/233 (47%), Gaps = 25/233 (10%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LPVSSGT 57
M + LS + A++ +++ F ++Q+T+ +G +G GK+T + L M +P +
Sbjct: 7 MEARGLSFFY-GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVE 65
Query: 58 AKIY-----NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK---------- 102
+I +D D+ +RR +G+ Q F K ++ E++ + ++
Sbjct: 66 GEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAE 124
Query: 103 QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162
+V + L + + + D + A LSGG Q++L +A A +++DEP S
Sbjct: 125 RVERSLRHAALWDEVKD-----RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179
Query: 163 VDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
+DP + + I EL+ + K T+I+ TH M +A + D A GKL G +
Sbjct: 180 LDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPT 232
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 79.5 bits (196), Expect = 1e-17
Identities = 60/214 (28%), Positives = 103/214 (48%), Gaps = 19/214 (8%)
Query: 11 PNGKLAVNGL-NVNF--YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT 67
P + GL N++F E + +GH G+GK+T + +L SSGT I + I
Sbjct: 14 PGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITP 73
Query: 68 D-----MTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
+ + +R+ + + Q+ LF+ TV + + F + +D A+ + + +
Sbjct: 74 ETGNKNLKKLRKKVSLVFQFPEAQLFEN-TVLKDVEFGPKNFGFSEDEAKEKALKWLKKV 132
Query: 121 GIPHKRTSLANT----LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
G+ L + LSGG R++++A + LDEP +G+DP R+ + +L
Sbjct: 133 GLS---EDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFK 189
Query: 177 KYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
Y+K G TVIL TH MD+ D + ++ GKL
Sbjct: 190 DYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 78.4 bits (193), Expect = 1e-17
Identities = 50/192 (26%), Positives = 104/192 (54%), Gaps = 5/192 (2%)
Query: 20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79
LNV + +I + +G +GAGK+T ++++ G + +SG+ K+ + T + +R + +
Sbjct: 19 LNVA--DGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH-TGLAPYQRPVSML 75
Query: 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQR 139
Q N LF LTV +++ Q ++ + +GI L LSGG ++
Sbjct: 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQ 135
Query: 140 KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILTTHYMDEADLL 197
++++A + + ++LDEP S +DP R + L+ + ++ RT+++ TH++ +A +
Sbjct: 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAI 195
Query: 198 GDRIAIIAAGKL 209
+IA+++ GK+
Sbjct: 196 ASQIAVVSQGKI 207
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 79.0 bits (195), Expect = 2e-17
Identities = 63/208 (30%), Positives = 107/208 (51%), Gaps = 16/208 (7%)
Query: 12 NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT---- 67
KLA++ +N+ + + LG NG+GK+T + +L S G K+Y + T
Sbjct: 21 TEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEG--KVYVDGLDTSDEE 78
Query: 68 DMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK 125
++ IR G+ Q N + + VEE + F + +P + + + + +G+
Sbjct: 79 NLWDIRNKAGMVFQNPDNQIVATI-VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEY 137
Query: 126 RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRR----SIWELLIKYKKG 181
R + LSGG ++++++A +I DEPT+ +DP RR +I EL KY G
Sbjct: 138 RRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKY--G 195
Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKL 209
T+IL THYM+EA + DRI ++ +GK+
Sbjct: 196 ITIILITHYMEEA-VEADRIIVMDSGKV 222
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 78.2 bits (193), Expect = 2e-17
Identities = 49/199 (24%), Positives = 97/199 (48%), Gaps = 7/199 (3%)
Query: 20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79
++ +I + LG +GAGK+T ++++ G +SG I D T R + +
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDH-TASPPAERPVSML 76
Query: 80 PQYNALFDKLTVEEHMWF--YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGM 137
Q N LF LTV +++ LK + + ++ +G+ L LSGG
Sbjct: 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQ--REKVEAAAAQVGLAGFLKRLPGELSGGQ 134
Query: 138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILTTHYMDEAD 195
++++++A + ++LDEP S +DP R + L+ + ++ T+++ TH+ ++A
Sbjct: 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAA 194
Query: 196 LLGDRIAIIAAGKLQCCGS 214
+ DR+ + G++ GS
Sbjct: 195 RIADRVVFLDNGRIAAQGS 213
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 79.1 bits (195), Expect = 2e-17
Identities = 59/234 (25%), Positives = 117/234 (50%), Gaps = 8/234 (3%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
++L + K A+N +N + + +G NGAGK+T G+L +SG+ I
Sbjct: 7 RDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGE 66
Query: 64 DI-RTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
I + ++ +R+ +G+ Q + +F TVE+ + F + ++ +S+ + L
Sbjct: 67 PITKENIREVRKFVGLVFQNPDDQIFSP-TVEQDIAFGPINLGLDEETVAHRVSSALHML 125
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
G+ R + + LSGG ++++++A + ++LDEPT+G+DP + + + L +
Sbjct: 126 GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPE 185
Query: 181 --GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS--SVFLKNSFARGYYLSL 230
G TVI +TH +D + D I ++ G++ G+ +FL+ +L L
Sbjct: 186 TYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLARVHLDL 239
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 78.5 bits (193), Expect = 2e-17
Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 26/214 (12%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA----------KIYNHDI 65
A+N +N+ ++ IT+ +G +G GK+T + L M + G IY+++
Sbjct: 22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81
Query: 66 RTDMTTIRRSLGVC-----PQYNALFDKLTVEEHMWFYSQLKQ----VPKDLAQLEISNM 116
D+ +RR +G+ P +++D ++ + K+ V + L + + N
Sbjct: 82 --DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE 139
Query: 117 IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
+ D K + A +LSGG Q++L +A +++DEPTS +DP S I EL+I
Sbjct: 140 VKD-----KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELII 194
Query: 177 KYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
K+ T+I+ TH M +A + DR A G ++
Sbjct: 195 NLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE 228
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 77.0 bits (190), Expect = 2e-17
Identities = 50/214 (23%), Positives = 91/214 (42%), Gaps = 45/214 (21%)
Query: 1 MAIQNLSKRFP-NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
++I N+S +P + + L++ + + + LG +G+GK+T + +L G L G
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 60 IYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
+ + + + V Q LFD T+ +
Sbjct: 61 LDGVPVSDLEKALSSLISVLNQRPYLFDT-TLRN-------------------------N 94
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
LG SGG +++L++A + + V+LDEPT G+DP + R + L+ +
Sbjct: 95 LGRR---------FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL 145
Query: 180 KGRTVILTTHYMDEADLLG----DRIAIIAAGKL 209
K +T+I TH+ L G D+I + GK+
Sbjct: 146 KDKTLIWITHH-----LTGIEHMDKILFLENGKI 174
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 78.2 bits (193), Expect = 2e-17
Identities = 55/209 (26%), Positives = 99/209 (47%), Gaps = 11/209 (5%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
I +L + GK A+ +N+ ++ LG +G GKTT ++++ G +P G+ +
Sbjct: 4 ISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDG 62
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI--VDL 120
+ R GV Q L V++++ F QL V K M+ V L
Sbjct: 63 --KPVEGPGAER--GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGL 118
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK--Y 178
KR LSGG ++++ +A A + ++LDEP +D ++R + LL+K
Sbjct: 119 EGAEKRYIW--QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ 176
Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAG 207
+ G+ V+L TH ++EA + + +++ G
Sbjct: 177 ETGKQVLLITHDIEEAVFMATELVLLSPG 205
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 77.3 bits (191), Expect = 3e-17
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 10/176 (5%)
Query: 18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLG 77
+ L+ + G NGAGKTT + +L G+L +G I+ + ++L
Sbjct: 19 SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALL 78
Query: 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI--VDL-GIPHKRTSLANTLS 134
+ +LT E++ F+ + I + V L G+ LS
Sbjct: 79 YLGHQPGIKTELTALENLHFWQRFHG---SGNAATIWEALAQVGLAGLEDL---PVGQLS 132
Query: 135 GGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI-KYKKGRTVILTTH 189
G QR++++A ++ + ILDEP + +D + L+ +G V+LTTH
Sbjct: 133 AGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 79.6 bits (197), Expect = 3e-17
Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 32/228 (14%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++ +SK F +GK ++ L++ + + LG +G GKTT + ++ G SG +
Sbjct: 17 LRGISKSF-DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDG 75
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD-----------LAQL 111
DI T + R + Q ALF +TV E++ F ++++ P + QL
Sbjct: 76 QDI-THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQL 134
Query: 112 EISNMIVDLG--IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRR 169
E + PH+ LSGG Q+++++A A + + ++LDE S +D Y R
Sbjct: 135 E------EFAQRKPHQ-------LSGGQQQRVAIARAVVNKPKVLLLDESLSALD-YKLR 180
Query: 170 SIWELLIKY---KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
+ +K K G T + TH +EA + DRI ++ G+++ G+
Sbjct: 181 KQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 77.5 bits (192), Expect = 3e-17
Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 30/229 (13%)
Query: 3 IQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+N+S R+ PN + ++ + + +G G+GK++ + L ++ +SSG+ I
Sbjct: 5 FKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILID 64
Query: 62 NHDIRT-DMTTIRRSLGVCPQYNALFDKLTV-----------EEHMWFYSQLKQVPKDLA 109
DI + +R + + PQ LF T+ +E +W L++V
Sbjct: 65 GVDISKIGLHDLRSRISIIPQDPVLFSG-TIRSNLDPFGEYSDEELW--QALERV----- 116
Query: 110 QL--EISNMIVDLGIPHKRTSLANTLSGGMQRKL-SVAMAFIGGSRTVILDEPTSGVDPY 166
L + ++ G+ LS G QR+L +A A + S+ ++LDE T+ VDP
Sbjct: 117 GLKEFVESL--PGGLDTVVEEGGENLSVG-QRQLLCLARALLRKSKILVLDEATASVDPE 173
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDE-ADLLGDRIAIIAAGKLQCCGS 214
+ I + + + K TV+ H +D D DRI ++ G++ S
Sbjct: 174 TDALIQKTIREAFKDCTVLTIAHRLDTIIDS--DRILVLDKGRVVEFDS 220
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 78.1 bits (192), Expect = 3e-17
Identities = 56/207 (27%), Positives = 105/207 (50%), Gaps = 14/207 (6%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LP--VSSGTAKIYNHDI---RT 67
A++G++++F E ++T+ +G +G GK+T + L M + +G K +I +
Sbjct: 19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 68 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-KDLAQLEISNMIVDLGI-PHK 125
D+ +R+ +G+ Q F +V +++ + ++ V K+L + + I
Sbjct: 79 DLVELRKEVGMVFQQPTPF-PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET 137
Query: 126 RTSL---ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
+ +L A SGG Q+++ +A A + V+LDEPTS +DP S I E L++ K
Sbjct: 138 KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQY 197
Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKL 209
T I+ TH + +A + D+ A + G L
Sbjct: 198 TFIMVTHNLQQAGRISDQTAFLMNGDL 224
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 77.6 bits (191), Expect = 3e-17
Identities = 63/228 (27%), Positives = 119/228 (52%), Gaps = 20/228 (8%)
Query: 13 GKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTT 71
GK+ A++ ++++ + +I + +G NGAGKTT + L G +SG DI TD T
Sbjct: 16 GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDI-TDWQT 74
Query: 72 ---IRRSLGVCPQYNALFDKLTVEEHM---WFYSQLKQVPKDLAQLEISNMIVDL--GIP 123
+R ++ + P+ +F ++TVEE++ F+++ Q + + + +L +
Sbjct: 75 AKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKW------VYELFPRLH 128
Query: 124 HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGR 182
+R A T+SGG Q+ L++ A + R ++LDEP+ G+ P + I++ + + + +G
Sbjct: 129 ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGM 188
Query: 183 TVILTTHYMDEADLLGDRIAIIAAGK--LQCCGSSVFLKNSFARGYYL 228
T+ L ++A L DR ++ G L+ G ++ L N R YL
Sbjct: 189 TIFLVEQNANQALKLADRGYVLENGHVVLEDTGDAL-LANEAVRSAYL 235
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 78.3 bits (193), Expect = 4e-17
Identities = 65/222 (29%), Positives = 117/222 (52%), Gaps = 9/222 (4%)
Query: 3 IQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML-PVSSGTAKI 60
+++S +P+ K A+N ++ + T+ +GHNG+GK+T ++ G+L P + +KI
Sbjct: 8 FKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI 67
Query: 61 YNHDIRTDMTT---IRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM 116
I T IR +G+ Q + F TV + + F + + VP+ + ++
Sbjct: 68 TVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDV 127
Query: 117 IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL- 175
+ D+G+ S LSGG ++++++A + +ILDE TS +DP + I +L+
Sbjct: 128 LADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187
Query: 176 -IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV 216
+K K TVI TH +DEA+ + D++ ++ GKL GS V
Sbjct: 188 KLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPV 228
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 78.1 bits (192), Expect = 5e-17
Identities = 55/222 (24%), Positives = 109/222 (49%), Gaps = 18/222 (8%)
Query: 7 SKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR 66
+K+ P A+N ++ F ++++T +G G+GK+T I + G++ +G + ++ I
Sbjct: 17 AKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIP 76
Query: 67 TDMTTI------RRSLGVC---PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
++ I R+ +G+ P+Y + T+E+ + F K A ++ ++
Sbjct: 77 ANLKKIKEVKRLRKEIGLVFQFPEYQLFQE--TIEKDIAFGPVNLGENKQEAYKKVPELL 134
Query: 118 VDLGIPH---KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
+ +P KR+ LSGG +R++++A T++LDEPT G+DP L
Sbjct: 135 KLVQLPEDYVKRSPF--ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINL 192
Query: 175 LIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
+ K + +I+ TH MD+ + D + ++ GK+ GS
Sbjct: 193 FERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 77.4 bits (190), Expect = 6e-17
Identities = 62/213 (29%), Positives = 109/213 (51%), Gaps = 13/213 (6%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSSGTAKIY-----NHDIRT 67
AV ++++F E+ +T+ +G +G GK+T +I+ + ++P + T KI +D
Sbjct: 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78
Query: 68 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQ--LEISNMIVDL--GI 122
D +IRR +G+ Q F +++ +++ +L +V + A +E S V L +
Sbjct: 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV 138
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
+ S A LSGG Q++L +A +++DEP S +DP S I EL+ + K+
Sbjct: 139 KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKY 198
Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
T+I+ TH M +A + D A G L CG +
Sbjct: 199 TIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 77.3 bits (190), Expect = 6e-17
Identities = 53/207 (25%), Positives = 102/207 (49%), Gaps = 14/207 (6%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LPVSSGTAKIY--NHDI---RT 67
A+ G++++F +++IT+ +G +G GK+T + L M +P + T + +I
Sbjct: 20 ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE 79
Query: 68 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-----KQVPKDLAQLEISNMIVDLGI 122
D+ +R+ +G+ Q F ++ E++ + +L K V + + + + +
Sbjct: 80 DVVQLRKQVGMVFQQPNPF-PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV 138
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
A +LSGG Q+++ +A ++LDEPTS +DP S I +L++ +
Sbjct: 139 KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQY 198
Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKL 209
T+IL TH M +A + D+ A G L
Sbjct: 199 TIILVTHSMHQASRISDKTAFFLTGNL 225
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 77.5 bits (191), Expect = 7e-17
Identities = 55/226 (24%), Positives = 112/226 (49%), Gaps = 13/226 (5%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+++L R+ +G A+ GL+++ E T+ LG NGAGK+T + L G+ G K+
Sbjct: 7 VEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMG 66
Query: 63 HDI-RTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
++ + +R +G+ Q + +F TV + + F V L + E+ + +
Sbjct: 67 REVNAENEKWVRSKVGLVFQDPDDQVFSS-TVWDDVAF----GPVNMGLDKDEVERRVEE 121
Query: 120 ----LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
+ + R LS G ++++++A ++LDEP + +DP + ++ E+L
Sbjct: 122 ALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL 181
Query: 176 IK-YKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKN 220
+ + +G+TVI+ TH +D A D++ ++ G++ G L +
Sbjct: 182 DRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTD 227
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 77.4 bits (191), Expect = 8e-17
Identities = 64/224 (28%), Positives = 119/224 (53%), Gaps = 26/224 (11%)
Query: 1 MAIQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ ++++S R+P+ A+ ++ + YE + + +GHNG+GK+T +L G+L +GT
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 60 IYNHDIRTDMTT--IRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM 116
+ + ++ T +RR +G+ Q + F TV++ + F + VP++ +
Sbjct: 66 V-GGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124
Query: 117 IVDLGI-------PHKRTSLANTLSGGMQRKLSVAMAFIGGSR--TVILDEPTSGVDPYS 167
+ +G+ PH+ LSGG +K VA+A + + +ILDE TS +DP
Sbjct: 125 LRQVGMEDFLNREPHR-------LSGG--QKQRVAIAGVLALQPDIIILDEATSMLDPRG 175
Query: 168 RRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
RR + E + +K +KG TV+ TH +DEA DR+ ++ G++
Sbjct: 176 RREVLETVRQLKEQKGITVLSITHDLDEA-AQADRVIVMNKGEI 218
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 77.9 bits (193), Expect = 1e-16
Identities = 73/223 (32%), Positives = 112/223 (50%), Gaps = 23/223 (10%)
Query: 3 IQNLSKRFPNGKLAVNGL-NVNFY--EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
++N+SK FP G ++ L NV+ + +I +G +GAGK+T I + + +SG
Sbjct: 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL 63
Query: 60 IYNHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
+ D+ ++ RR +G+ Q+ L TV +++ +L PK EI
Sbjct: 64 VDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKA----EIKA 119
Query: 116 MIVDL----GIPHKRTSLANTLSGGM-QRKLSVAMAFIGGSRTVIL--DEPTSGVDPYSR 168
+ +L G+ K LSGG QR VA+A S +L DE TS +DP +
Sbjct: 120 RVTELLELVGLSDKADRYPAQLSGGQKQR---VAIARALASNPKVLLCDEATSALDPATT 176
Query: 169 RSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
RSI ELL I + G T++L TH MD + DR+A+I AG+L
Sbjct: 177 RSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 78.2 bits (193), Expect = 1e-16
Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 23/174 (13%)
Query: 33 LGHNGAGKTTTISMLMGMLP---VSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKL 89
+G +GAGKTT ++ L P SG+ + I +R Q + L
Sbjct: 57 MGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE--MRAISAYVQQDDLFIPTL 114
Query: 90 TVEEHMWFYSQLK---QVPKDLAQLEISNMIVDLGIPHKRTSLANT----------LSGG 136
TV EH+ F + L+ +V K + + ++ LG+ ANT LSGG
Sbjct: 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGL----RKCANTRIGVPGRVKGLSGG 170
Query: 137 MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
+++L+ A + + DEPTSG+D + S+ ++L +KG+T+I T H
Sbjct: 171 ERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 76.2 bits (187), Expect = 2e-16
Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 13/209 (6%)
Query: 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSSGTAKIY--NHDI--- 65
K AV +N++ + + +G +G GKTT I+ + + P + T +I DI
Sbjct: 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP 76
Query: 66 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK-----DLAQLEISNMIVDL 120
R D +RR +G+ Q F ++V +++ +L + ++A+ + +
Sbjct: 77 RVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD 136
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
+ + + A LSGG Q++L +A A +++DEPTS +DP S I +L+ KK
Sbjct: 137 EVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK 196
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
T+I+ TH M +A + D + G L
Sbjct: 197 VTTIIIVTHNMHQAARVSDTTSFFLVGDL 225
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 75.8 bits (187), Expect = 2e-16
Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 28/231 (12%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+++ L RF G LAVN +N+ E +I S +G NGAGKTT + L G + GT +
Sbjct: 6 LSVSGLMMRF-GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILL 64
Query: 61 YNHDI--RTDMTTIRRSLGVCPQYNALFDKLTVEEHMW----------FYSQLKQVP--- 105
I R + Q+ LF ++TV E++ +S L + P
Sbjct: 65 RGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFR 124
Query: 106 -KDLAQLEISNMIVD-LGIPHKRTSLAN----TLSGGMQRKLSVAMAFIGGSRTVILDEP 159
+ L+ + ++ +G+ AN L+ G QR+L +A + ++LDEP
Sbjct: 125 RAESEALDRAATWLERVGL----LEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEP 180
Query: 160 TSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGK 208
+G++P + + EL+ + + TV+L H M + DRI ++ G
Sbjct: 181 AAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 75.8 bits (186), Expect = 2e-16
Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 30/217 (13%)
Query: 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT----------AKIYNH 63
K A+N +N+ YE++IT+ +G +G GK+T + L M + S IY+
Sbjct: 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76
Query: 64 DIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP 123
D+ D+ +R+ +G+ Q F +++ +++ + ++ + KD +L+ IV+ +
Sbjct: 77 DV--DVVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGI-KDKKELD---KIVEWAL- 128
Query: 124 HKRTSL-----------ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172
K+ +L A LSGG Q++L +A +++DEPTS +DP S I
Sbjct: 129 -KKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE 187
Query: 173 ELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+L+++ KK T+++ TH M +A + D A G L
Sbjct: 188 DLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDL 224
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 77.6 bits (192), Expect = 2e-16
Identities = 53/240 (22%), Positives = 98/240 (40%), Gaps = 65/240 (27%)
Query: 12 NGKLAVNGLNVNFYEDQITS---------------FLGHNGAGKTTTISMLMGMLPVSSG 56
G++ ++ + + + +G G+GK+T + +L+G+ + G
Sbjct: 461 QGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG 520
Query: 57 TAKIYNHDIRT-DMTTIRRSLGVCPQYNALF-----DKLT-----VEEHMWFYSQLKQVP 105
+ + DIR D +RR++G PQ LF D + ++
Sbjct: 521 SVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEI--------- 571
Query: 106 KDLAQLEISNMIVDLGIPHKRTSLANT---------------LSGGMQRK-LSVAMAFIG 149
L E++ G+ T LSGG QR+ +++A A +
Sbjct: 572 --LRAAELA------GV----TEFVRRHPDGLDMQIGERGRSLSGG-QRQAVALARALLR 618
Query: 150 GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
++LDEPTS +D S + L ++ G+T++L TH DL+ DRI ++ G++
Sbjct: 619 DPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLV-DRIIVMDNGRI 677
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 74.9 bits (184), Expect = 4e-16
Identities = 55/230 (23%), Positives = 110/230 (47%), Gaps = 31/230 (13%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML-----PVSS 55
+ I++L F ++ ++G+N+ ++ IT+ +G +G+GK+T + + ++ S
Sbjct: 4 IEIRDLKVSFGQVEV-LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVS 62
Query: 56 GTAKIYNHDI-RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL--- 111
G + DI + D+ +RR + + Q L++ E++ +L ++ K +L
Sbjct: 63 GEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQER 122
Query: 112 ------------EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159
E+ + L P A LSGG Q++L +A A ++ DEP
Sbjct: 123 VRWALEKAQLWDEVKDR---LDAP------AGKLSGGQQQRLCIARALAFQPEVLLADEP 173
Query: 160 TSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
T+ +DP + I L ++ KK T++L TH+ +A + D +A + G++
Sbjct: 174 TANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQI 223
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 73.9 bits (182), Expect = 4e-16
Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 5/157 (3%)
Query: 34 GHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE 93
G NG GKTT + +L G+L SG + + R++ L +L+ E
Sbjct: 33 GPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALE 92
Query: 94 HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRT 153
++ F++ + AQ I + + +G+ A LS G QR+L++A ++ +
Sbjct: 93 NLHFWAAIHGG----AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPL 148
Query: 154 VILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
ILDEPT+ +D + LL + +G V+LTTH
Sbjct: 149 WILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 74.7 bits (183), Expect = 7e-16
Identities = 56/197 (28%), Positives = 104/197 (52%), Gaps = 5/197 (2%)
Query: 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTTIRRS 75
+NG++ + + + S +G NG+GK+TT ++ G+ G KI + + + +RR
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 76 LGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLS 134
+G+ Q + F TVE+ + F + + +P++ + ++ + + +T LS
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLS 142
Query: 135 GGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMD 192
GG +++++VA +ILDE TS +DP R+ I ++ IK K TV+ TH +D
Sbjct: 143 GGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD 202
Query: 193 EADLLGDRIAIIAAGKL 209
EA DRI ++ AG++
Sbjct: 203 EA-ASSDRILVMKAGEI 218
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 74.6 bits (183), Expect = 7e-16
Identities = 57/221 (25%), Positives = 109/221 (49%), Gaps = 13/221 (5%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSSGT 57
+ +++LS + K AVN ++++ + +T+ +G +G GK+T +I+ + ++P +
Sbjct: 22 LEVKDLSIYYGE-KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSE 80
Query: 58 AKIYNH-----DIRTDMTTIRRSLGVCPQYNALFDKLTVEE--HMWFYS--QLKQVPKDL 108
+I D ++ +RR +G+ Q F K H Y+ + K V ++
Sbjct: 81 GEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEI 140
Query: 109 AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
+ ++ + + + S A +LSGG Q++L +A ++LDEP S +DP S
Sbjct: 141 VEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISN 200
Query: 169 RSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
I EL+ + K+ ++I+ TH M +A + DR A G L
Sbjct: 201 AKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDL 241
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 74.7 bits (184), Expect = 1e-15
Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 40/228 (17%)
Query: 3 IQNLSKRFPNGKL-----AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
++N+ K F N KL A++ ++V + + + +G G+GKTT I L +L +GT
Sbjct: 5 VKNIVKIF-NKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGT 63
Query: 58 AKIYNHDIRTDMTT-------------------------IRRSLGVCPQYN--ALFDKLT 90
+ D + T IRR +GV Q+ LF++ T
Sbjct: 64 IEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ-T 122
Query: 91 VEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH---KRTSLANTLSGGMQRKLSVAMAF 147
+E+ + F V K+ A+ + I +G+ +R+ LSGG +R++++A
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFE--LSGGQKRRVALAGIL 180
Query: 148 IGGSRTVILDEPTSGVDPYSRRSIWELLIK-YKKGRTVILTTHYMDEA 194
++ DEPT+G+DP + I E+ K+G+T+IL TH +D
Sbjct: 181 AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNV 228
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 73.3 bits (180), Expect = 1e-15
Identities = 53/237 (22%), Positives = 108/237 (45%), Gaps = 11/237 (4%)
Query: 1 MAIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ +++ R+ P+G + ++ +++ ++ +G +G+GK+T ++ +G
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 60 IYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN--- 115
+ HD+ D +RR +GV Q N LF++ ++ +++ + + + +++
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNR-SIRDNIALADPGMSMERVIEAAKLAGAHD 119
Query: 116 --MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
+ G LSGG ++++++A A I R +I DE TS +D S +I
Sbjct: 120 FISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMR 179
Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSL 230
+ GRTVI+ H + DRI ++ G++ GS L G Y L
Sbjct: 180 NMHDICAGRTVIIIAHRL-STVKNADRIIVMEKGRIVEQGSHDELLAE--NGLYAYL 233
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 73.5 bits (180), Expect = 2e-15
Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 16/214 (7%)
Query: 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-----SGTAK 59
L K F +AV +V +++IT F+G +G GK+T + L M + G
Sbjct: 12 KLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVH 71
Query: 60 IYNHDIR---TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ-----L 111
D+ D +RR +G+ Q F +++ +++ F +L + DL L
Sbjct: 72 FLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHAL 130
Query: 112 EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
+ + + ++ K + L +LSGG Q++L +A A ++LDEP S +DP + R +
Sbjct: 131 QGAALWDEVKDKLKVSGL--SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV 188
Query: 172 WELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA 205
EL+++ KK T+ L TH M +A + D A +
Sbjct: 189 EELMVELKKDYTIALVTHNMQQAIRVADTTAFFS 222
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 72.3 bits (178), Expect = 2e-15
Identities = 52/205 (25%), Positives = 105/205 (51%), Gaps = 8/205 (3%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++N+SK+F K+ ++ LN+ + ++ + +G +G+GK+T ++++ + SG +
Sbjct: 1 LKNISKKF-GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG 59
Query: 63 HDIRT-----DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
+ R LG Q AL + TVEE++ + K++ K + + +
Sbjct: 60 QETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEAL 119
Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
+G+ K LSGG Q+++++A A + ++ DEPT +DP +R + +LL++
Sbjct: 120 EKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
Query: 178 YKK-GRTVILTTHYMDEADLLGDRI 201
G+T+I+ TH + A DR+
Sbjct: 180 LNDEGKTIIIVTHDPEVAK-QADRV 203
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 73.0 bits (179), Expect = 2e-15
Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 23/224 (10%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSSGTAK 59
I+N S + K AV + + +++QIT+ +G +G GKTT +I+ + +P K
Sbjct: 6 IENFSA-YYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGK 64
Query: 60 IYN-----HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS 114
IY +D + D+T R+ +G+ Q F +++ +++ F ++ V K +L
Sbjct: 65 IYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF-PMSIYDNVAFGPRIHGV-KSKHKL--- 119
Query: 115 NMIVDLG---------IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
+ IV+ + + LSGG Q++L +A A ++LDEPTS +DP
Sbjct: 120 DRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP 179
Query: 166 YSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+ + I +LL + + T+++ TH + +A + D IA + G+L
Sbjct: 180 IATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 73.1 bits (179), Expect = 2e-15
Identities = 57/211 (27%), Positives = 105/211 (49%), Gaps = 5/211 (2%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++N+S +P+G A+ +N+ + + +G NG+GK+T L G+L G +
Sbjct: 4 LENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG 63
Query: 63 HDI--RTDMTTIRRSLGVCPQY-NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
D + + IR+ +G+ Q F TVEE + F + +P + + + +
Sbjct: 64 IDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAE 123
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-Y 178
+G+ R TLSGG + +++A +I DE TS +DP S ++ E + K +
Sbjct: 124 IGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLH 183
Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+KG+T++ TH ++E DRI ++ GK+
Sbjct: 184 EKGKTIVYITHNLEELH-DADRIIVMDRGKI 213
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 71.8 bits (177), Expect = 3e-15
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 9/180 (5%)
Query: 12 NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR-TDMT 70
G++ +GL+ + G NG+GKTT + ++ G+LP ++GT K+ DI D+
Sbjct: 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVA 72
Query: 71 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA 130
LG NA+ LTV E++ F++ +L+I+ + +G+
Sbjct: 73 EACHYLG---HRNAMKPALTVAENLEFWAAF----LGGEELDIAAALEAVGLAPLAHLPF 125
Query: 131 NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL-IKYKKGRTVILTTH 189
LS G +R++++A + ILDEPT+ +D + EL+ +G VI TH
Sbjct: 126 GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATH 185
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 72.3 bits (178), Expect = 3e-15
Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 9/192 (4%)
Query: 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
N++ + G+ + ++ + + +G +G+GK+T + +L VSSG+ I D
Sbjct: 5 NVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQD 64
Query: 65 IRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD--LG 121
IR + ++RR++GV PQ LF+ T+ ++ Y + +++ + + I D +
Sbjct: 65 IREVTLDSLRRAIGVVPQDTVLFND-TIGYNI-RYGRPDATDEEVIEAAKAAQIHDKIMR 122
Query: 122 IPHK-RTSLAN---TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
P T + LSGG ++++++A A + ++LDE TS +D ++ R I L
Sbjct: 123 FPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD 182
Query: 178 YKKGRTVILTTH 189
KGRT I+ H
Sbjct: 183 VSKGRTTIVIAH 194
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 72.2 bits (178), Expect = 3e-15
Identities = 49/180 (27%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSL 76
GL++ + + +G +G GK+T +S+L +SG + DIR ++ +R +
Sbjct: 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQI 79
Query: 77 GVCPQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL---- 129
G+ Q LFD T+ E++ + + ++V + + I + I+ L P +L
Sbjct: 80 GLVSQEPVLFDG-TIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL--PDGYDTLVGER 136
Query: 130 ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH 189
+ LSGG ++++++A A + + ++LDE TS +D S + + E L + KGRT I+ H
Sbjct: 137 GSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAH 196
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 72.7 bits (178), Expect = 3e-15
Identities = 61/264 (23%), Positives = 120/264 (45%), Gaps = 36/264 (13%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML---PVSSGTAK 59
++ L+K F + A++ +++N + ++ + LG +G+GK+T + L G++ + +
Sbjct: 7 VEKLAKTFNQHQ-ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIE 65
Query: 60 IYNHDIRT------DMTTIRRSLGVCPQYNALFDKLTVEEHM----------------WF 97
+ ++ D+ R + G Q L ++L+V E++ WF
Sbjct: 66 LLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWF 125
Query: 98 YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157
+ KQ + +G+ H +TLSGG Q+++++A A + ++ ++ D
Sbjct: 126 TREQKQ--------RALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILAD 177
Query: 158 EPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
EP + +DP S R + + L I G TV++T H +D A +RI + G + GSS
Sbjct: 178 EPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSS 237
Query: 216 VFLKNSFARGYYLSLDMKSAQLQA 239
N Y S++ +A
Sbjct: 238 QQFDNERFDHLYRSINRVEENAKA 261
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 71.6 bits (176), Expect = 4e-15
Identities = 51/215 (23%), Positives = 108/215 (50%), Gaps = 11/215 (5%)
Query: 5 NLSKRFPNGKLAV---NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
NL KR+ GKL G++++ + +I + +G +G+GK+T + +L G+ +SG
Sbjct: 6 NLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFN 65
Query: 62 NHDIRT----DMTTIR-RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM 116
+ + +R + LG Q++ L T E++ + + A+ M
Sbjct: 66 GQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEM 125
Query: 117 IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
+ +G+ H+ + LSGG ++++++A A + V+ DEPT +D + + I++L++
Sbjct: 126 LEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLML 185
Query: 177 KYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+ + + ++ TH ++ A L DR+ + G+L
Sbjct: 186 ELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQL 219
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 72.2 bits (177), Expect = 4e-15
Identities = 53/212 (25%), Positives = 105/212 (49%), Gaps = 24/212 (11%)
Query: 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-----SGTAKIYNHDI---RTD 68
+ G+++ ++ + + +G +G GK+T + +L ++ G +++ +I D
Sbjct: 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVD 79
Query: 69 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTS 128
+RR +G+ QY F LT+ +++ +L + K +L+ V+ + K+ +
Sbjct: 80 PIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELD---ERVEWAL--KKAA 134
Query: 129 L-----------ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
L + LSGG +++L +A A + +++DEPT+ +DP I ELL +
Sbjct: 135 LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194
Query: 178 YKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
KK T++L TH +A + D +A + GKL
Sbjct: 195 LKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 72.4 bits (177), Expect = 4e-15
Identities = 59/216 (27%), Positives = 108/216 (50%), Gaps = 11/216 (5%)
Query: 10 FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LPVSSGTAKIYNHDIR 66
F K A+ +N+ +++IT+ +G +G GK+T + M + G +I D++
Sbjct: 11 FYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVK 70
Query: 67 T-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQV--PKDLAQLEISNMIVDLG-- 121
D+ +R+++G+ Q +F K ++ E++ + +L + KD + + + + +G
Sbjct: 71 NQDVVALRKNVGMVFQQPNVFVK-SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLF 129
Query: 122 --IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
+ K A LSGG Q++L +A A + ++LDEPTS +DP S I ELL +
Sbjct: 130 EEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS 189
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
++I+ TH M + + D A G+L G S
Sbjct: 190 HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGES 225
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 72.5 bits (178), Expect = 4e-15
Identities = 61/219 (27%), Positives = 110/219 (50%), Gaps = 19/219 (8%)
Query: 31 SFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-MTTIRRSLGVCPQY-NALFDK 88
S +GHNG+GK+TT+ ++ G+L SG I + + + IR +G+ Q + F
Sbjct: 37 SIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96
Query: 89 LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFI 148
TVE+ + F + K +P + + ++ + +G+ + LSGG ++++++A A
Sbjct: 97 ATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVA 156
Query: 149 GGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAA 206
+ +ILDE TS +DP R + + + I+ TVI TH +DE L DR+ ++
Sbjct: 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKN 215
Query: 207 GKLQCCGSSVFLKNSFARGYYLSLDMKSAQLQAEDIGLD 245
G+++ S+ + F+RG L +GLD
Sbjct: 216 GQVE---STSTPRELFSRGNDL-----------LQLGLD 240
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 71.4 bits (175), Expect = 5e-15
Identities = 45/183 (24%), Positives = 86/183 (46%), Gaps = 13/183 (7%)
Query: 34 GHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVE 92
G +G GK+T + ++ ++ +SGT D+ T R+ + C Q ALF TVE
Sbjct: 36 GPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVE 94
Query: 93 EHMWFYSQL---KQVPKDLAQLEISNMIVDLGIPHKR-TSLANTLSGGMQRKLSVAMAFI 148
+++ F Q+ + L + +P T LSGG ++++++
Sbjct: 95 DNLIFPWQIRNRRPDRAAALDL-----LARFALPDSILTKNITELSGGEKQRIALIRNLQ 149
Query: 149 GGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILTTHYMDEADLLGDRIAIIAA 206
+ ++LDE TS +D ++R+I E++ +Y ++ V+ TH D+A D++ +
Sbjct: 150 FMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQP 209
Query: 207 GKL 209
G
Sbjct: 210 GHA 212
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 71.7 bits (176), Expect = 5e-15
Identities = 53/195 (27%), Positives = 99/195 (50%), Gaps = 8/195 (4%)
Query: 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSL 76
+ G+N+ + + S +GH+G GK+T ++++ G+ +SG + I T+ R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI-TEPGPDRM-- 57
Query: 77 GVCPQYNALFDKLTVEEHMWFY--SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLS 134
V Q +L LTV E++ L + K + + I +G+ LS
Sbjct: 58 -VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLS 116
Query: 135 GGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILTTHYMD 192
GGM++++++A A + ++LDEP +D +R ++ E L++ + TV++ TH +D
Sbjct: 117 GGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD 176
Query: 193 EADLLGDRIAIIAAG 207
EA LL DR+ ++ G
Sbjct: 177 EALLLSDRVVMLTNG 191
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 73.3 bits (181), Expect = 6e-15
Identities = 65/248 (26%), Positives = 108/248 (43%), Gaps = 34/248 (13%)
Query: 1 MAIQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ + N+S +P+ V GL++ + + LG G GK+T + +L G
Sbjct: 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL 398
Query: 60 IYNHDIRT-DMTTIRRSLGVCPQYNALF-----DKLTVEEHMWFYSQLKQVPKDLAQLEI 113
+ I +R+++ V Q LF D L + L +V L Q+ +
Sbjct: 399 LNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEV---LQQVGL 455
Query: 114 SNMIVD-------LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
++ D LG LSGG QR+L +A A + + ++LDEPT G+D
Sbjct: 456 EKLLEDDKGLNAWLG------EGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLG----DRIAIIAAGKLQCCGSSVFLKNSF 222
+ R I ELL ++ + +TV++ TH L G DRI ++ G++ G+ L
Sbjct: 510 TERQILELLAEHAQNKTVLMITH-----RLTGLEQFDRICVMDNGQIIEQGTHQELLA-- 562
Query: 223 ARGYYLSL 230
+G Y L
Sbjct: 563 QQGRYYQL 570
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 71.6 bits (175), Expect = 7e-15
Identities = 48/219 (21%), Positives = 111/219 (50%), Gaps = 14/219 (6%)
Query: 10 FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI------YNH 63
+ N K + + + + I +G +G+GK+T + +L ++ + K+ +
Sbjct: 19 YINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGK 78
Query: 64 DI-RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE--ISNMIVDL 120
DI + D +R+ +G+ Q F L++ +++ + + + K+ +++ + + +
Sbjct: 79 DIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGI-KEKREIKKIVEECLRKV 137
Query: 121 GI---PHKR-TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
G+ + R S A+ LSGG Q++L++A A + +++DEPTS +D + ++I +L+
Sbjct: 138 GLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197
Query: 177 KYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
+ K +++ +H + + D +A + G+L GSS
Sbjct: 198 ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSS 236
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 71.6 bits (175), Expect = 1e-14
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 24/212 (11%)
Query: 8 KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN----- 62
K F G LA+ +++ +I +F+G +G GK+T + M + G AK+
Sbjct: 27 KVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG-AKVEGRLLYR 85
Query: 63 ----HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL--------KQVPKDLAQ 110
+D + + +RR +G+ Q F K ++ E++ F + + V L +
Sbjct: 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRR 144
Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
I + D K LSGG Q++L +A A +++DEP S +DP S R
Sbjct: 145 AAIWEEVKD-----KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQ 199
Query: 171 IWELLIKYKKGRTVILTTHYMDEADLLGDRIA 202
+ EL ++ K+ T+I+ TH M +A + D A
Sbjct: 200 VEELCLELKEQYTIIMVTHNMQQASRVADWTA 231
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 70.4 bits (172), Expect = 2e-14
Identities = 52/212 (24%), Positives = 104/212 (49%), Gaps = 24/212 (11%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LPVS--SGTAKIYNHDIRT--- 67
A+ G+++ E + +F+G +G GK+T + + M +P + G +I +I
Sbjct: 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77
Query: 68 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL----------KQVPKDLAQLEISNMI 117
+ +R+++G+ Q F K ++ E++ + ++ ++V + L + + +
Sbjct: 78 QVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV 136
Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
D K A LSGG Q++L +A A +++DEP S +DP S + EL+ +
Sbjct: 137 KD-----KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 178 YKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
KK T+++ TH M +A + D+ A G++
Sbjct: 192 LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEM 223
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 70.9 bits (173), Expect = 2e-14
Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 44/243 (18%)
Query: 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA--------------- 58
K ++ LN++ +++T+F+G +G GK+T + L + + GT+
Sbjct: 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154
Query: 59 KIYNHDIRTDM-----------TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD 107
KI + ++RT + +I ++ P+ N + D+ +E K V K
Sbjct: 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILE---------KIVEKS 205
Query: 108 LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
L + + + D N LSGG Q++L +A A +++DEPTS +DP +
Sbjct: 206 LKSAALWDEVKD-----DLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260
Query: 168 RRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS--SVFL--KNSFA 223
I EL+++ KK ++I+ TH M +A + D G ++ G ++F+ KN
Sbjct: 261 TAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKRT 320
Query: 224 RGY 226
+ Y
Sbjct: 321 KDY 323
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 69.7 bits (171), Expect = 3e-14
Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 36/218 (16%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISML--MGMLPVS---SGTAKIYNHDI---RT 67
A+ +N++ E+Q+T+ +G +G GK+T + L M L S G + DI
Sbjct: 18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77
Query: 68 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP-----KDLAQLEISNMIVDLGI 122
D+ +R+ +G+ Q F M Y + P KD +L + IV+ +
Sbjct: 78 DVNQLRKRVGMVFQQPNPFP-------MSIYDNVAYGPRTHGIKDKKKL---DEIVEKSL 127
Query: 123 PHKRTSL-----------ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
K +L A LSGG Q++L +A A +++DEPTS +DP S I
Sbjct: 128 --KGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKI 185
Query: 172 WELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
EL+ + KK T+++ TH M +A + D+ A G++
Sbjct: 186 EELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEI 223
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 69.1 bits (169), Expect = 5e-14
Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 33/233 (14%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ + LSK + GK ++ + Y ++ +G +G+GK+T + L G L GTA
Sbjct: 4 LQVSGLSKSYGGGK-GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY 62
Query: 61 YNHDIRT-DMTTI----RRSL-----GVCPQYNALFDKLTV-------EEHMWF----YS 99
++ + RR L G Q ++ V E M Y
Sbjct: 63 IMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYG 122
Query: 100 QLKQVPKD-LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158
++ +D L ++EI +D L SGGMQ++L +A + R V +DE
Sbjct: 123 NIRATAQDWLEEVEIDPTRID--------DLPRAFSGGMQQRLQIARNLVTRPRLVFMDE 174
Query: 159 PTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
PT G+D + + +LL + G VI+ TH + A LL R+ ++ G++
Sbjct: 175 PTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV 227
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 70.5 bits (173), Expect = 6e-14
Identities = 57/242 (23%), Positives = 116/242 (47%), Gaps = 26/242 (10%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
I ++S + G ++ +++ + T+ +G +G+GK+T +L+G SG +
Sbjct: 476 INDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG 535
Query: 63 HDIRT-DMTTIRRSLGVCPQYNALFD-------------KLTVEEHMWFYSQLKQVPKDL 108
++ D T+R+ + PQ +F ++ +E +W ++ ++ D
Sbjct: 536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDE-IWAACEIAEIKDD- 593
Query: 109 AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
I NM LG + + +++SGG ++++++A A + S+ +ILDE TS +D +
Sbjct: 594 ----IENM--PLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE 647
Query: 169 RSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYL 228
+ I L+ + +T+I H + A D+I ++ GK+ GS L + G+Y
Sbjct: 648 KKIVNNLLNLQD-KTIIFVAHRLSVAKQS-DKIIVLDHGKIIEQGSHDELLD--RNGFYA 703
Query: 229 SL 230
SL
Sbjct: 704 SL 705
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 68.4 bits (168), Expect = 7e-14
Identities = 50/204 (24%), Positives = 96/204 (47%), Gaps = 28/204 (13%)
Query: 3 IQNLSKRFPN-GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+N++ R+P G + ++++ + + +G +G+GK+T ++++ V SG I
Sbjct: 3 FKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILID 62
Query: 62 NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD------LAQLE-- 112
HD+R + ++RR +G+ Q LF+ TV E++ Y + ++ A
Sbjct: 63 GHDVRDYTLASLRRQIGLVSQDVFLFND-TVAENI-AYGRPGATREEVEEAARAANAHEF 120
Query: 113 ISNM-------IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
I + I + G+ LSGG ++++++A A + +ILDE TS +D
Sbjct: 121 IMELPEGYDTVIGERGV---------KLSGGQRQRIAIARALLKDPPILILDEATSALDT 171
Query: 166 YSRRSIWELLIKYKKGRTVILTTH 189
S R + L + K RT + H
Sbjct: 172 ESERLVQAALERLMKNRTTFVIAH 195
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 68.2 bits (167), Expect = 9e-14
Identities = 54/224 (24%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 1 MAIQNLSKRFPNGKLAVN---GLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
+ + +LSK G+ ++ G+ + + + +G +G+GK+T +++L G+ SSG
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 58 AKIYNHDI-------RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ 110
++ + R + R +G Q L LT E++ +L+ ++
Sbjct: 67 VRLLGQPLHKLDEDARAALR--ARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSR 124
Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
++ +G+ + T LSGG Q+++++A AF G + DEPT +D +
Sbjct: 125 AGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDK 184
Query: 171 IWELLIKYKKGR--TVILTTHYMDEADLLG--DRIAIIAAGKLQ 210
I +LL + R T++L TH D L DR + +G+L
Sbjct: 185 IADLLFALNRERGTTLVLVTH--DPQ-LAARCDRQLRLRSGRLV 225
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 68.6 bits (167), Expect = 9e-14
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 26/212 (12%)
Query: 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT----------AKIYNHDIR 66
+ +N++F E QIT+ +G +G GK+T + L M + SG IY+ ++
Sbjct: 20 LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL- 78
Query: 67 TDMTTIRRSLGVC-----PQYNALFDKLTVEEHMW---FYSQLKQ-VPKDLAQLEISNMI 117
D+ +R+ +G+ P ++FD + M S+L + V K L Q + + +
Sbjct: 79 -DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV 137
Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
D ++ LA LSGG Q++L +A +++DEP S +DP S I EL+ +
Sbjct: 138 KD---NLHKSGLA--LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE 192
Query: 178 YKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
K+ T+ + TH M +A D + G L
Sbjct: 193 LKQNYTIAIVTHNMQQAARASDWTGFLLTGDL 224
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 66.9 bits (164), Expect = 1e-13
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 42/210 (20%)
Query: 3 IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
++N+S R+P + V ++ + + + +G +G+GK+T +++G+L +SG ++
Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLD 62
Query: 62 NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
DI D + +G PQ + LF ++ E
Sbjct: 63 GADISQWDPNELGDHVGYLPQDDELFSG-SIAE--------------------------- 94
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
N LSGG +++L +A A G R ++LDEP S +D R++ + + K
Sbjct: 95 ----------NILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA 144
Query: 181 -GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
G T I+ H E DRI ++ G++
Sbjct: 145 AGATRIVIAHRP-ETLASADRILVLEDGRV 173
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 68.1 bits (166), Expect = 1e-13
Identities = 51/208 (24%), Positives = 99/208 (47%), Gaps = 13/208 (6%)
Query: 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSS-----GTAKIYNHDIR-- 66
K A+ +++ ++ +T+ +G +G GK+T I L M + G I DI
Sbjct: 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84
Query: 67 -TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI--- 122
D+ +R+++G+ Q F +++ +++ + ++ K + N + +
Sbjct: 85 DVDVVELRKNVGMVFQKPNPF-PMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE 143
Query: 123 -PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKG 181
+ S A +LSGG Q++L +A + ++ DEPTS +DP S I +L++ KK
Sbjct: 144 TSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKD 203
Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKL 209
T+++ TH M +A + D G+L
Sbjct: 204 YTIVIVTHNMQQAARISDYTGFFLMGEL 231
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 67.1 bits (165), Expect = 1e-13
Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 46/215 (21%)
Query: 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
+ +N+ + ++ + +G G+GK++ +S L+G L SG+ +
Sbjct: 17 TSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---------- 66
Query: 73 RRSLGVCPQY----------NALFDKLTVEEHMWFYSQLK--QVPKDLAQLE--ISNMIV 118
S+ Q N LF K + + +K + DL L I
Sbjct: 67 --SIAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEIG 122
Query: 119 DLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI-- 176
+ GI LSGG ++++S+A A + +LD+P S VD + R I+E I
Sbjct: 123 EKGI---------NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILG 173
Query: 177 KYKKGRTVILTTH---YMDEADLLGDRIAIIAAGK 208
+T IL TH + A D+I ++ G+
Sbjct: 174 LLLNNKTRILVTHQLQLLPHA----DQIVVLDNGR 204
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 67.9 bits (166), Expect = 1e-13
Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 23/226 (10%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LPVSSGT 57
++ +NL+ + K A+ + ++ ++++T+ +G +G GK+T + M +P T
Sbjct: 7 LSTKNLNLWY-GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRIT 65
Query: 58 AKI-YN----HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE 112
I YN D D+ +RR +G+ Q F K ++ E++ + ++ K+ L+
Sbjct: 66 GDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE-KNKKTLD 123
Query: 113 ISNMIVDLGIPHK------RTSL---ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV 163
IV+ + + L A +LSGG Q++L +A +++DEP S +
Sbjct: 124 ---TIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSAL 180
Query: 164 DPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
DP + I +L+ KK TVI+ TH M +A + D + GKL
Sbjct: 181 DPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKL 226
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 67.9 bits (166), Expect = 2e-13
Identities = 57/223 (25%), Positives = 112/223 (50%), Gaps = 18/223 (8%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ ++NL K+F +G+ ++G+++ ++ + +G +G+GKTT + + + +GT ++
Sbjct: 4 IEVKNLVKKF-HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV 62
Query: 61 YNHDIRTD---------MTTIRRSLGVCPQYNALFDKLTVEEH-MWFYSQLKQVPKDLAQ 110
+ I T + +R+ +G Q LF TV E+ + +K PK+ A
Sbjct: 63 GDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEAT 122
Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
++ +G+ K TS LSGG Q+++++A A ++ DEPTS +DP
Sbjct: 123 ARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDP---EL 179
Query: 171 IWELLIKYK----KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+ E+L + + RT+++ TH M A + DR + G++
Sbjct: 180 VGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 67.9 bits (166), Expect = 2e-13
Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 31/219 (14%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTI---SMLMGMLPVSSGTAKI 60
+NL+ + + LAV + ++ ++QIT+F+G +G GK+T + + L ++P K+
Sbjct: 14 ENLNVYYGS-FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV 72
Query: 61 YNH-----DIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL---- 111
H D +RR +G+ Q F K ++ +++ + +++ D+ +L
Sbjct: 73 TFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERS 131
Query: 112 --------EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV 163
E+ + + G+ +LSGG Q++L +A A +++DEP S +
Sbjct: 132 LRQAALWDEVKDKLKQSGL---------SLSGGQQQRLCIARAIAVQPEVILMDEPCSAL 182
Query: 164 DPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIA 202
DP S I EL+ + K+ T+I+ TH M +A + D A
Sbjct: 183 DPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTA 221
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 67.8 bits (165), Expect = 2e-13
Identities = 61/223 (27%), Positives = 101/223 (45%), Gaps = 18/223 (8%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG---- 56
MA NL+ F GK ++ +++ F +TS +G G+GKTT + L M SG
Sbjct: 22 MAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYS 80
Query: 57 ------TAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD--- 107
I+N+ D+ RR +G+ Q F ++ + K VP+
Sbjct: 81 GDVLLGGRSIFNY---RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFR 137
Query: 108 -LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
+AQ ++ + + + + + LSGG Q+ L +A ++LDEPTS +DP
Sbjct: 138 GVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPT 197
Query: 167 SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+ I E + TVI+ TH + +A + DR A+ G+L
Sbjct: 198 TTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRL 240
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 68.8 bits (168), Expect = 3e-13
Identities = 51/172 (29%), Positives = 96/172 (55%), Gaps = 12/172 (6%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
+I + LG +G+GK+T ++ L G + ++ T I ++ + ++R+ G Q + L+
Sbjct: 95 EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYP 153
Query: 88 KLTVEEHMWFYSQLKQVPKDLAQLE----ISNMIVDLGIPH-KRTSLANT----LSGGMQ 138
LTV E + F S L+ +PK L + E ++I +LG+ + T + N+ +SGG +
Sbjct: 154 HLTVRETLVFCSLLR-LPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGER 212
Query: 139 RKLSVAMAFIGGSRTVILDEPTSGVDPYSR-RSIWELLIKYKKGRTVILTTH 189
+++S+A + +ILDEPTSG+D + R + L +KG+T++ + H
Sbjct: 213 KRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMH 264
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 67.4 bits (164), Expect = 3e-13
Identities = 53/222 (23%), Positives = 108/222 (48%), Gaps = 23/222 (10%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTT------TISMLMGMLPVS 54
+ +++LS + K A+ G++++ Y +++T+ +G +G GK+T IS L G + V
Sbjct: 8 IKVKDLSFYYNTSK-AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVE 66
Query: 55 SGTAKIYNHDI---RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQL 111
G + +I R ++ +RR +G+ Q F +++ E++ + + + L Q
Sbjct: 67 -GVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF-PMSIYENVAYGVR---ISAKLPQA 121
Query: 112 EISNMIVDL--------GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV 163
++ ++ + K A LSGG Q++L +A A + +++DEP S +
Sbjct: 122 DLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSAL 181
Query: 164 DPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIA 205
DP + + EL+ + T+ + TH M +A + D A +
Sbjct: 182 DPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFS 223
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 68.1 bits (167), Expect = 3e-13
Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 18/221 (8%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
M N +R N L N IT+ G +G+GKT+ I+M+ G+ G ++
Sbjct: 1 MLELNFRQRLGNFALDAN---FTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIEL 57
Query: 61 YNHDIRTDMT------TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS 114
N + D +R +G Q LF TV L+ + +
Sbjct: 58 -NGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV------RGNLRYGMWKSMRAQFD 110
Query: 115 NMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
++ LGI H TLSGG ++++++ A + +++DEP + +D +R I
Sbjct: 111 QLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPY 170
Query: 175 LIK-YKKGRTVIL-TTHYMDEADLLGDRIAIIAAGKLQCCG 213
L + + IL +H +DE L DR+ ++ GK++ G
Sbjct: 171 LERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 66.8 bits (163), Expect = 3e-13
Identities = 56/222 (25%), Positives = 114/222 (51%), Gaps = 16/222 (7%)
Query: 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LP--VSSG 56
+++NL+ + K + +N++ Y+ ++T+F+G +G GK+T + M +P G
Sbjct: 7 SVKNLNLWY-GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKG 65
Query: 57 TAKIYNHDI---RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE- 112
I D+ T++ +R +G+ Q F K ++ +++ + +L + K+ +L+
Sbjct: 66 ELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDE 124
Query: 113 -ISNMIVDLGI----PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
+ + +G+ + A LSGG Q++L +A A +++DEP S +DP +
Sbjct: 125 IVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVA 184
Query: 168 RRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
I L+ + KK T+I+ TH M +A + DR+A +G++
Sbjct: 185 TNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRI 226
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 66.6 bits (163), Expect = 4e-13
Identities = 49/212 (23%), Positives = 99/212 (46%), Gaps = 16/212 (7%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP--VSSGTAKIYNHDIRTDMTTIR 73
V LN++ ++ + +G +G+GK+ T ++G+LP ++ + +I +IR
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR 60
Query: 74 -RSLGVCPQ-----YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRT 127
R + Q +N LF T+ H + A+ I + +G+P
Sbjct: 61 GRHIATIMQNPRTAFNPLF---TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEE 117
Query: 128 SL---ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGR 182
L LSGGM +++ +A+A + +I DEPT+ +D ++ + +LL ++ G
Sbjct: 118 VLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGT 177
Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
++L TH + + D +A++ G++ G+
Sbjct: 178 GILLITHDLGVVARIADEVAVMDDGRIVERGT 209
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 68.2 bits (167), Expect = 4e-13
Identities = 56/237 (23%), Positives = 113/237 (47%), Gaps = 16/237 (6%)
Query: 4 QNLSKRFP-NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+N++ R+P + A++ +++ + + +G +G+GK+T ++++ SG +
Sbjct: 334 RNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG 393
Query: 63 HDIRTDMT--TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD--LAQLEISNMI- 117
HD+ D T ++RR + + Q LF+ T+ ++ Y + +Q + L +
Sbjct: 394 HDLA-DYTLASLRRQVALVSQDVVLFND-TIANNI-AYGRTEQADRAEIERALAAAYAQD 450
Query: 118 ----VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
+ LG+ LSGG +++L++A A + + +ILDE TS +D S R +
Sbjct: 451 FVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQA 510
Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSL 230
L + +GRT ++ H + + DRI ++ G++ G+ L G Y L
Sbjct: 511 ALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIVERGTHNELLA--RNGLYAQL 564
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 67.7 bits (166), Expect = 4e-13
Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 43/228 (18%)
Query: 14 KLAVNGL------NVNF--YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI 65
+L V+ L +V+F + +I G GAG+T + +L G LP +SG + H++
Sbjct: 257 RLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEV 316
Query: 66 RTDMTTIRRSLGVCPQ--------Y-------NALFDKLTVEEHM------WFYSQLKQV 104
T PQ Y + L ++V+E+M +F +
Sbjct: 317 VT----------RSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSL 366
Query: 105 PKDLAQLEISNMIVDLGI--PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162
Q +S+ I I P ++ LSGG Q+K+++A + + +ILDEPT G
Sbjct: 367 KHADEQQAVSDFIRLFNIKTPSMEQAIGL-LSGGNQQKVAIARGLMTRPKVLILDEPTRG 425
Query: 163 VDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
VD +++ I++L+ ++K G ++IL + M E + DRI ++ G++
Sbjct: 426 VDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
Score = 50.8 bits (122), Expect = 3e-07
Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ ++ + K FP K A++G +N Y ++ + +G NGAGK+T + +L G+ +G+ I
Sbjct: 5 LQLKGIDKAFPGVK-ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS--I 61
Query: 61 YNHDIRTDMTTIRRS----LGVCPQYNALFDKLTVEEHMW----FYSQLKQVPKDLAQLE 112
+ S +G+ Q L +LT+ E+++ F ++ ++ E
Sbjct: 62 LYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAE 121
Query: 113 ISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160
++ L + L LS G Q+ + +A S+ +I+DEPT
Sbjct: 122 ADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPT 169
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 67.4 bits (165), Expect = 4e-13
Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 25/201 (12%)
Query: 29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-------RTDMTTIRRSLGVCPQ 81
+T+ G +G+GKTT I ++ G+ G +I + + +R +G Q
Sbjct: 25 VTAIFGRSGSGKTTLIRLIAGLTRPDEG--EIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82
Query: 82 YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKL 141
LF L+V ++ + +K+ ++ +I LGI H L LSGG ++++
Sbjct: 83 EARLFPHLSVRGNLRY--GMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRV 140
Query: 142 SVAMAFIGGSRTVILDEPTSGVD--------PYSRRSIWELLIKYKKGRTVILTTHYMDE 193
++ A + R +++DEP + +D PY R E I ++ +H + E
Sbjct: 141 AIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIP------ILYVSHSLQE 194
Query: 194 ADLLGDRIAIIAAGKLQCCGS 214
L DR+ ++ G++ G
Sbjct: 195 VLRLADRVVVLEDGRVAAAGP 215
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 66.4 bits (162), Expect = 4e-13
Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 11/216 (5%)
Query: 5 NLSKRFPNGKLAVNGL-NVNFY--EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
NL KR+ G + + L NV+F E ++ + +G +G+GK+T + +L G+ +SG
Sbjct: 10 NLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFN 69
Query: 62 NHDIRTDMTTIR-----RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM 116
+ + + + LG Q++ L T E++ + + M
Sbjct: 70 GQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEM 129
Query: 117 IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL- 175
+ +G+ H+ + LSGG ++++++A A + R V+ DEPT +D + SI++LL
Sbjct: 130 LAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLG 189
Query: 176 -IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
+ +G ++ TH + A + R + G+L
Sbjct: 190 ELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLT 224
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 66.6 bits (163), Expect = 6e-13
Identities = 59/228 (25%), Positives = 113/228 (49%), Gaps = 27/228 (11%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-----SS 55
+ ++NL+ F K A+ +++ ++++T+F+G +G GK+T + M +
Sbjct: 26 LEVRNLN-LFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIE 84
Query: 56 GTAKIYNHDI---RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE 112
G ++ +I + D+ +RR +G+ Q F K ++ E++ + +L+ + + L+
Sbjct: 85 GEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI-NNRRVLD 142
Query: 113 ISNMIVDLGIPHKRTSL-----------ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS 161
V+ + + +L A LSGG Q++L +A A ++LDEPTS
Sbjct: 143 ---EAVERSL--RGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTS 197
Query: 162 GVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+DP S I EL+ + K T+++ TH M +A + D A + GKL
Sbjct: 198 ALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKL 245
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 66.3 bits (162), Expect = 6e-13
Identities = 61/215 (28%), Positives = 107/215 (49%), Gaps = 26/215 (12%)
Query: 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LPVSSGTAKIYNHDI----- 65
K A+ G+++ F +++IT+ +G +G+GK+T + L M + ++ T +I I
Sbjct: 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92
Query: 66 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK 125
++ +R+ +G+ Q F K ++ E++ F + V KD L+ IV+ + K
Sbjct: 93 EINVYEMRKHIGMVFQRPNPFAK-SIYENITFALERAGV-KDKKVLD---EIVETSL--K 145
Query: 126 RTSL-----------ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
+ +L A TLSGG Q++L +A A +++DEP S +DP S + E
Sbjct: 146 QAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEET 205
Query: 175 LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+ + KK T+I+ TH M +A D A G L
Sbjct: 206 MFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDL 240
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 66.2 bits (161), Expect = 6e-13
Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 25/219 (11%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSS-----GT 57
+ NLS + K+ + G+++ Y+ ++T+ +G +G GK+T + L M + S G
Sbjct: 10 VNNLSFYYDTQKI-LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGR 68
Query: 58 AKIYNHDI---RTDMTTIRRSLG-VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI 113
+ +N +I R ++ +RR + V P+ N LF + + + PK LEI
Sbjct: 69 VEFFNQNIYERRVNLNRLRRQVSMVHPKPN-LFPMSVYDNVAYGVKIVGWRPK----LEI 123
Query: 114 SNMI------VDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
+++ DL I HK A LSGG Q++L +A A + +++DEP G+DP
Sbjct: 124 DDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDP 183
Query: 166 YSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIA 202
+ + L+ ++ + T+++ +H + + L D A
Sbjct: 184 IASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTA 222
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 67.1 bits (164), Expect = 8e-13
Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 11/221 (4%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+ + K F A+ +N+ Y +I + LG NGAGK+T + +L G+ + GT I N
Sbjct: 8 MAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINN 66
Query: 63 HDIRTDMTTIRRSLGVCPQYNAL--FDKLTVEEHMWFYSQLKQ----VP-KDLAQLEI-- 113
+ + LG+ Y L D+LTV E+++ L + V D ++ +
Sbjct: 67 INYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRA 126
Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
+ M++ +G+ LS ++ L +A + ++ +I+DEPTS + ++
Sbjct: 127 AMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFL 186
Query: 174 LLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
++ + +K G ++ +H + E + DR ++ G C G
Sbjct: 187 IMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
Score = 50.9 bits (122), Expect = 2e-07
Identities = 47/233 (20%), Positives = 102/233 (43%), Gaps = 39/233 (16%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++N++ R K V ++ + +I F G G+G+T ++ L G+ + G ++
Sbjct: 268 VRNVTSR-DRKK--VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNG 324
Query: 63 HDI--RTDMTTIRRSLGVCPQY---NALFDKLTVEEHMWFYSQLK--------------- 102
DI R+ + +++ + + N F ++ ++M LK
Sbjct: 325 KDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD 384
Query: 103 -----QVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157
+ ++L L+ + V+ I LSGG Q+K+ ++ +I D
Sbjct: 385 EQRTAENQRELLALKCHS--VNQNI--------TELSGGNQQKVLISKWLCCCPEVIIFD 434
Query: 158 EPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
EPT G+D ++ I++++ + G+ +++ + + E + DRIA+ G+L
Sbjct: 435 EPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRL 487
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 65.8 bits (160), Expect = 9e-13
Identities = 56/237 (23%), Positives = 112/237 (47%), Gaps = 23/237 (9%)
Query: 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISML------------MG 49
+ L+ + G A+ +N+ +E Q+T+ +G +G GK+T + G
Sbjct: 18 EVNKLNFYY-GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEG 76
Query: 50 MLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK-DL 108
+ + I + ++ D +R + + Q F K ++ E++ + +++ V + +
Sbjct: 77 EIILHPDNVNILSPEV--DPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSI 133
Query: 109 AQLEISNMIVDLG----IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
+ + N + + + + LA LSGG Q++L +A A ++ DEPTS +D
Sbjct: 134 LEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALD 193
Query: 165 PYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS--VFLK 219
P + SI EL+ K T+++ TH M +A + D A + G+L G++ +F+K
Sbjct: 194 PIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIK 250
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 65.4 bits (160), Expect = 1e-12
Identities = 52/237 (21%), Positives = 112/237 (47%), Gaps = 41/237 (17%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ +NL+ + K +N L+++ +IT+ +G NG GK+T + +L SGT +
Sbjct: 3 LRTENLTVGYGT-KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61
Query: 61 YNHDIRTDMTT--IRRSLGVCPQ--------------------YNALFDKLTVEEHMWFY 98
+ I + +++ + R L + PQ + +L+ +L+ E++
Sbjct: 62 GDKPI-SMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNA--- 117
Query: 99 SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158
+V + + Q I+++ +R + LSGG +++ +AM + V+LDE
Sbjct: 118 ----RVNQAMEQTRINHLAD------RRLT---DLSGGQRQRAFLAMVLAQDTPVVLLDE 164
Query: 159 PTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
PT+ +D + + L+ + +G+TV+ H +++A D + ++A G + G+
Sbjct: 165 PTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 64.5 bits (158), Expect = 1e-12
Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 42/232 (18%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP---VSSGTAK 59
I++L GK + G+N+ + ++ + +G NG+GK+T +MG P V+ G
Sbjct: 3 IKDLHVSV-GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPKYEVTEGEIL 60
Query: 60 IYNHDIRTDMTTIRRS---LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM 116
DI TD+ R+ + + QY + + + +
Sbjct: 61 FKGEDI-TDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY------------------- 100
Query: 117 IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
V+ G SGG +++ + + ILDEP SG+D + R + E++
Sbjct: 101 -VNEG-----------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVIN 148
Query: 177 KYK-KGRTVILTTHYMDEADLL-GDRIAIIAAGKLQCCGSSVFLKNSFARGY 226
K + +G++V++ THY D + DR+ ++ G++ G +GY
Sbjct: 149 KLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALEIEKKGY 200
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 65.3 bits (160), Expect = 1e-12
Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 63/226 (27%)
Query: 3 IQNLSKRFPNGKL--------AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS 54
++NL K FP GK AV+G++ + E + +G +G GK+T +++G+ +
Sbjct: 7 VKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT 66
Query: 55 SGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS 114
SG +I F+ + ++ K+ + +
Sbjct: 67 SG--EIL------------------------FEGK----------DITKLSKEERRERVL 90
Query: 115 NMIVDLGIPHKRTSLANT----LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
++ +G+P LSGG ++++ +A A + ++ DEP S +D +
Sbjct: 91 ELLEKVGLP---EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQ 147
Query: 171 IWELLIKYKK--GRTVILTTHYMDEADL-----LGDRIAIIAAGKL 209
I LL ++ G T + +H DL + DRIA++ GK+
Sbjct: 148 ILNLLKDLQEELGLTYLFISH-----DLSVVRYISDRIAVMYLGKI 188
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 64.9 bits (158), Expect = 2e-12
Identities = 53/206 (25%), Positives = 100/206 (48%), Gaps = 13/206 (6%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS-----SGTAKIYNHDI--RTD 68
A+ +N+ Q+T+ +G +G GK+T + L M + +G + DI D
Sbjct: 18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77
Query: 69 MTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-----KQVPKDLAQLEISNMIVDLGIP 123
+ +R +G+ Q F +++ E++ + + K+V ++ + + + +
Sbjct: 78 VADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK 136
Query: 124 HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRT 183
+ S A LSGG Q++L +A +++DEPTS +DP + I EL+ + KK T
Sbjct: 137 DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYT 196
Query: 184 VILTTHYMDEADLLGDRIAIIAAGKL 209
+++ TH M +A + DR A G+L
Sbjct: 197 IVIVTHSMQQARRISDRTAFFLMGEL 222
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 64.8 bits (158), Expect = 2e-12
Identities = 50/209 (23%), Positives = 96/209 (45%), Gaps = 10/209 (4%)
Query: 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
G+L V+G++V +T LG NG+GK+T + +L G L +GT + D+ ++
Sbjct: 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHG-LSRR 71
Query: 73 RRS--LGVCPQYNALFDKLTVEE-----HMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK 125
R+ + + Q + LTV + + S A + + + + H
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAV-VDRALARTELSHL 130
Query: 126 RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-YKKGRTV 184
+TLSGG ++++ VA A + ++LDEPT+ +D ++ L+ + G TV
Sbjct: 131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTV 190
Query: 185 ILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
+ H ++ A D + ++ G++ G
Sbjct: 191 VAALHDLNLAASYCDHVVVLDGGRVVAAG 219
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 64.1 bits (156), Expect = 2e-12
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 34 GHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEE 93
G NG+GKTT + +L G+ P +G + + +I R L + L+V E
Sbjct: 33 GPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLE 92
Query: 94 HMWFYSQL---KQVPKDLAQLEISNMIVDL-GIPHKRTSLANTLSGGMQRKLSVAMAFIG 149
++ F+ +QV + LA+ V L G + LS G QR++++A +
Sbjct: 93 NLRFWHADHSDEQVEEALAR-------VGLNGFEDR---PVAQLSAGQQRRVALARLLLS 142
Query: 150 GSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
G ILDEPT+ +D E + + +G V+LTTH
Sbjct: 143 GRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 65.4 bits (160), Expect = 3e-12
Identities = 58/225 (25%), Positives = 117/225 (52%), Gaps = 18/225 (8%)
Query: 1 MAIQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
++++N++ P GK + G++ + + + +G +G+GK+T +++G+ P +SG+ +
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376
Query: 60 IYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS---N 115
+ D++ D T + +G PQ LF TV E++ + + K + +++
Sbjct: 377 LDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHE 435
Query: 116 MIVDLGIPHK-RTSLAN---TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
+I L +P T + TLSGG ++++++A A G + V+LDEP S +D +++
Sbjct: 436 LI--LRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQAL 493
Query: 172 WELLIKYKK-GRTVILTTHYMDEADLLG--DRIAIIAAGKLQCCG 213
+ K G TV++ TH LLG D+I ++ G++ G
Sbjct: 494 ANAIKALKARGITVVVITH---RPSLLGCVDKILVLQDGRIARFG 535
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 65.3 bits (160), Expect = 4e-12
Identities = 57/216 (26%), Positives = 103/216 (47%), Gaps = 15/216 (6%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++L P+GK LN Q + +G +GAGKT+ ++ L+G LP G+ KI
Sbjct: 352 AEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ-GSLKING 410
Query: 63 HDIRT-DMTTIRRSLGVCPQYNALF-----DKLTVEEHMWFYSQLKQVPKDLAQLEISNM 116
++R D + R+ L Q L D + + QL+Q L +S
Sbjct: 411 IELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQA---LENAWVSEF 467
Query: 117 IVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
+ L G+ A LS G ++L++A A + + ++LDEPT+ +D +S + + +
Sbjct: 468 LPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA 527
Query: 175 LIKYKKGRTVILTTHYMDEADLLG-DRIAIIAAGKL 209
L + +T ++ TH ++ DL D+I ++ G++
Sbjct: 528 LNAASRRQTTLMVTHQLE--DLAQWDQIWVMQDGQI 561
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 63.6 bits (155), Expect = 5e-12
Identities = 58/218 (26%), Positives = 104/218 (47%), Gaps = 32/218 (14%)
Query: 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT----------AKIYNHD 64
AV +N+N +T+F+G +G GK+T + L M V G +Y
Sbjct: 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77
Query: 65 IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-----KQVPKDLAQ--LEISNM- 116
+ D +RR++G+ Q F +++ +++ +L K+ +L + L +N+
Sbjct: 78 V--DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLW 135
Query: 117 --IVD-LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
+ D L P LSGG Q++L +A A +++DEP S +DP S +I +
Sbjct: 136 NEVKDRLDKP------GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIED 189
Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIA---IIAAGK 208
L+ + K+ T+++ TH M +A + D+ A + A GK
Sbjct: 190 LINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGK 227
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 63.0 bits (153), Expect = 5e-12
Identities = 51/211 (24%), Positives = 101/211 (47%), Gaps = 5/211 (2%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
+++SK + G+ A+ G+ + ++ GH+GAGK+T + ++ G+ S+G H
Sbjct: 5 EHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGH 64
Query: 64 DI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
DI ++ +RR +G+ Q + L TV +++ + D + +S +
Sbjct: 65 DITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDK 124
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
+G+ K + LSGG Q+++ +A A + ++ DEPT +D I L ++
Sbjct: 125 VGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN 184
Query: 180 K-GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+ G TV++ TH + R+ ++ G L
Sbjct: 185 RVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 63.2 bits (154), Expect = 6e-12
Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 27/192 (14%)
Query: 34 GHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTT--------IRRS--------LG 77
G +G+GK+T + L G + + D+ T +RR+ L
Sbjct: 44 GPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103
Query: 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA-NTLSGG 136
V P+ +AL V E + + VP+++A+ + ++++ L +P + SLA T SGG
Sbjct: 104 VIPRVSALD---VVAEPL----LARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGG 156
Query: 137 MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEA-- 194
Q+++++A FI ++LDEPT+ +D +R + E LI+ K R L + DE
Sbjct: 157 EQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE-LIREAKARGAALVGIFHDEEVR 215
Query: 195 DLLGDRIAIIAA 206
+ + DR+ ++A
Sbjct: 216 EAVADRLLDVSA 227
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 63.3 bits (154), Expect = 6e-12
Identities = 60/229 (26%), Positives = 109/229 (47%), Gaps = 12/229 (5%)
Query: 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
A++N+S R P G+ ++ L++ F ++T +GHNG+GK+T + ML P S G +
Sbjct: 13 ALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLD 71
Query: 62 NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEE------HMWFYSQLKQVPKDLAQLEIS 114
+ + R + PQ + +TV E + W + + D ++E +
Sbjct: 72 AQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEA 131
Query: 115 NMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
+V L R L ++LSGG +++ +AM SR ++LDEPTS +D + + L
Sbjct: 132 ISLVGLKPLAHR--LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL 189
Query: 175 L--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221
+ + ++G TVI H ++ A D + + G++ G+ L
Sbjct: 190 VHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRG 238
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 63.2 bits (154), Expect = 6e-12
Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 27/216 (12%)
Query: 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM---LPVSSGTAKIY--NHDI--- 65
K A+ ++++ E +T+F+G +G GK+T + L M + T KI DI
Sbjct: 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDP 91
Query: 66 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK 125
R D+ +R +G+ Q F K ++ E++ + ++ + + A+L+ IV+ + +
Sbjct: 92 RLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELD---EIVETSL--R 145
Query: 126 RTSLAN-----------TLSGGMQRKLSVAMAFIGGSRTVIL-DEPTSGVDPYSRRSIWE 173
+ L LSGG Q++L +A A I S VIL DEP S +DP + + E
Sbjct: 146 KAGLWEEVKDRLHEPGTGLSGGQQQRLCIARA-IAVSPEVILMDEPCSALDPIATAKVEE 204
Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
L+ + ++ T+++ TH M +A + R A G L
Sbjct: 205 LIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNL 240
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 63.3 bits (154), Expect = 7e-12
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 17/219 (7%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT--- 57
+++QN++ + + AV + + ++T+ +G +G GK+T + L M + G
Sbjct: 14 ISLQNVTISYGTFE-AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLK 72
Query: 58 -------AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ 110
+Y+ + D +RR +G+ Q F K ++ E++ F +++ D+ +
Sbjct: 73 GRVLFDGTDLYDPRV--DPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDE 129
Query: 111 L---EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
L + V K +LSGG Q++L +A +++DEP S +DP S
Sbjct: 130 LVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPIS 189
Query: 168 RRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAA 206
I E + + KK T+++ TH M +A + D A A
Sbjct: 190 TLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 62.4 bits (152), Expect = 1e-11
Identities = 53/213 (24%), Positives = 114/213 (53%), Gaps = 10/213 (4%)
Query: 4 QNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT---AK 59
+N+SK F G V + +++N + ++ +G +G+GK+T + + + ++SG
Sbjct: 5 KNVSKHF--GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDG 62
Query: 60 IYNHDIRTDMTTIRRSLG-VCPQYNALFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMI 117
+ +D + D IR+ G V Q+ LF LT E++ F +++ K+ A+ + ++
Sbjct: 63 LKVNDPKVDERLIRQEAGMVFQQFY-LFPHLTALENVMFGPLRVRGASKEEAEKQARELL 121
Query: 118 VDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
+G+ + + LSGG Q+++++A A + ++ DEPTS +DP R + +++
Sbjct: 122 AKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQD 181
Query: 178 Y-KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
++G T+++ TH + A+ + R+ I G++
Sbjct: 182 LAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRI 214
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 63.6 bits (155), Expect = 1e-11
Identities = 48/196 (24%), Positives = 104/196 (53%), Gaps = 9/196 (4%)
Query: 3 IQNLSKRFPNGKLAV---NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
++++ + +P+G+ V G++++ Y ++ + +G +G+GK+T +++L + +SGT +
Sbjct: 7 LKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYR 66
Query: 60 IYNHDIRT----DMTTIRRS-LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS 114
+ D+ T + +RR G Q L LT +++ + + + L
Sbjct: 67 VAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQ 126
Query: 115 NMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
++ LG+ + + LSGG Q+++S+A A + G + ++ DEPT +D +S + +
Sbjct: 127 ELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAI 186
Query: 175 LIKYK-KGRTVILTTH 189
L + + +G TVI+ TH
Sbjct: 187 LHQLRDRGHTVIIVTH 202
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 61.8 bits (151), Expect = 2e-11
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 26/208 (12%)
Query: 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIR 73
A+ ++ + +G NGAGK+T + +L G+ P SGT + +
Sbjct: 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV--------RGRVS 86
Query: 74 RSLGVCPQYNALFDK-LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-GIPHKRTSLAN 131
LG+ F+ LT E+++ +L + + E + I++ +
Sbjct: 87 SLLGL----GGGFNPELTGRENIYLNGRLLGLSRKEID-EKIDEIIEFSELGDFIDLPVK 141
Query: 132 TLSGGMQRKL--SVAMAFIGGSRTVILDEPTSGVDPY----SRRSIWELLIKYKKGRTVI 185
T S GM+ +L ++A A +++DE + D +R + ELL K+G+TVI
Sbjct: 142 TYSSGMKARLAFAIATAL--EPDILLIDEVLAVGDAAFQEKCQRRLRELL---KQGKTVI 196
Query: 186 LTTHYMDEADLLGDRIAIIAAGKLQCCG 213
L +H L DR ++ GK++ G
Sbjct: 197 LVSHDPSSIKRLCDRALVLEKGKIRFDG 224
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 62.0 bits (151), Expect = 2e-11
Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 37/233 (15%)
Query: 1 MAIQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSSG 56
+ ++NL+ F GK A+ +N++ ++Q+T+F+G +G GK+T T + + + P
Sbjct: 14 IQVRNLN--FYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRA 71
Query: 57 TAKIY--NHDI---RTDMTTIRRSLGVCPQ---------YN------ALFDKLTVEEHMW 96
+I +I + D+ +R +G+ Q Y+ LF+KL+ E
Sbjct: 72 EGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAE--- 128
Query: 97 FYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156
++V L + + N + D K +LSGG Q++L +A ++L
Sbjct: 129 ---MDERVEWALTKAALWNEVKD-----KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLL 180
Query: 157 DEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
DEP S +DP S I EL+ + K+ TV++ TH M +A D A + G+L
Sbjct: 181 DEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGEL 233
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 59.8 bits (146), Expect = 2e-11
Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 64/187 (34%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++NLSK + L + +++ +G NGAGK+T L+ K+
Sbjct: 3 LENLSKTYGGKLL-LKDISLTINPGDRIGLVGRNGAGKST----LL----------KLIA 47
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
++ D + V Y + QL
Sbjct: 48 GELEPDEGIVTWGSTVKIGY---------------FEQL--------------------- 71
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
SGG + +L++A + ++LDEPT+ +D S ++ E L +Y
Sbjct: 72 -----------SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYP--G 118
Query: 183 TVILTTH 189
TVIL +H
Sbjct: 119 TVILVSH 125
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 61.9 bits (150), Expect = 2e-11
Identities = 53/215 (24%), Positives = 100/215 (46%), Gaps = 31/215 (14%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK- 59
+ ++NL+ F + + N +N++ ++ +T+ +G +G GK+T I L M + G
Sbjct: 4 IEVENLNTYFDDAHILKN-VNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHE 62
Query: 60 ---------IYNHDIRTDMTTIRRSLGVC-----PQYNALFDKLTV------EEHMWFYS 99
IY+ + D+ +R+ +G+ P ++FD + E+ F
Sbjct: 63 GHIYLDGVDIYDPAV--DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 100 QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159
+ V + L + + + D K A LSGG Q++L +A +++DEP
Sbjct: 121 ER--VEESLKAAALWDEVKD-----KLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173
Query: 160 TSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEA 194
S +DP S I +L+ K K+ T+++ TH M +A
Sbjct: 174 CSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQA 208
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 60.6 bits (147), Expect = 3e-11
Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 43/195 (22%)
Query: 33 LGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92
LG NGAGKTT + ++G++P + GT K+ R +G PQ +
Sbjct: 12 LGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG----WRHIGYVPQRH--------- 58
Query: 93 EHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKR------------------TSLAN--- 131
E W + P +A +S +G +R T LA+
Sbjct: 59 EFAWDF------PISVAHTVMSGRTGHIG-WLRRPCVADFAAVRDALRRVGLTELADRPV 111
Query: 132 -TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
LSGG ++++ VA A ++LDEP +G+D ++ + EL I+ G +++TTH
Sbjct: 112 GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
Query: 190 YMDEADLLGDRIAII 204
+ +A DR+ ++
Sbjct: 172 DLAQAMATCDRVVLL 186
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 62.4 bits (152), Expect = 3e-11
Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 24/207 (11%)
Query: 21 NVNF--YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGV 78
N++ +I G GAG+T L G+ P G + +I T R + G+
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340
Query: 79 C--P---QYNALF---------DKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH 124
P Q + L+ LT F+ + ++ A LE +++ H
Sbjct: 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNR-RGFWIKPA---RENAVLERYRRALNIKFNH 396
Query: 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGR 182
+ A TLSGG Q+K+ +A + +I+DEPT GVD +R I++ LI+ +
Sbjct: 397 AEQA-ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ-LIRSIAAQNV 454
Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKL 209
V+ + ++E + + DR+ ++ G++
Sbjct: 455 AVLFISSDLEEIEQMADRVLVMHQGEI 481
Score = 60.4 bits (147), Expect = 1e-10
Identities = 55/212 (25%), Positives = 106/212 (50%), Gaps = 14/212 (6%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
+++SK++ +G + G++ + ++ + LG NGAGK+T + ++ G++P SGT +I +
Sbjct: 15 RSISKQY-SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN 73
Query: 64 DIRTDMTTIRRSLGV--CPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
LG+ PQ LF L+V+E++ F L + + +++ ++ LG
Sbjct: 74 PCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILF--GLPKRQASMQKMK--QLLAALG 129
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR----RSIWELLIK 177
S A +L ++ + + + SR +ILDEPT+ + P I ELL
Sbjct: 130 CQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL-- 187
Query: 178 YKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+G ++ +H + E L DRI+++ G +
Sbjct: 188 -AQGVGIVFISHKLPEIRQLADRISVMRDGTI 218
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 61.4 bits (149), Expect = 4e-11
Identities = 49/205 (23%), Positives = 104/205 (50%), Gaps = 16/205 (7%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSS-------GTAKIYNHDI 65
A++ ++++ E+Q+T+ +G +G GK+T I+ + ++ + +Y+ D+
Sbjct: 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113
Query: 66 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDL-AQLEISNMIVDL--GI 122
D +RR +G+ Q F K ++ +++ + +++ D+ ++E S L +
Sbjct: 114 --DPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV 170
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
+ S LSGG Q++L +A A +++DEP S +DP + I +L+ + +
Sbjct: 171 KDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEY 230
Query: 183 TVILTTHYMDEADLLGDRIAIIAAG 207
TV++ TH M +A + D+ A+ G
Sbjct: 231 TVVIVTHNMQQAARISDKTAVFLTG 255
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 61.6 bits (150), Expect = 4e-11
Identities = 64/260 (24%), Positives = 127/260 (48%), Gaps = 13/260 (5%)
Query: 1 MA---IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
MA ++N++K + + ++ + +N++ +E + F+G +G GK+T + M+ G+ ++SG
Sbjct: 1 MASVTLRNVTKAYGDVVISKD-INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG- 58
Query: 58 AKIYNHDIR-TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM 116
++ + R D+ R +G+ Q AL+ L+V E+M F +L K+ ++ +
Sbjct: 59 -DLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQV 117
Query: 117 IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
L + H LSGG ++++++ + +LDEP S +D R + +
Sbjct: 118 AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 177
Query: 177 KYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFL----KNSFARGYYLSL 230
+ K GRT+I TH EA L D+I ++ AG++ G + L N F G+ S
Sbjct: 178 RLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFIGSP 237
Query: 231 DMKSAQLQAEDIGLDGDRIR 250
M ++ ++ ++
Sbjct: 238 KMNFLPVKVTATAIEQVQVE 257
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 60.2 bits (146), Expect = 7e-11
Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 30/230 (13%)
Query: 3 IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI- 60
+++KRF G L V +GLN + + + +G +G+GK+T + +LM + P+ G ++
Sbjct: 3 FSDVTKRF--GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 61 ----YNHDIRT---------DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-KQVPK 106
Y+ R + +R +G+ Q LF TV +++ L + +
Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR 120
Query: 107 DLAQ---LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV 163
A+ +E+ +M+ G+ K + LSGG Q+++++A A + ++ DE TS +
Sbjct: 121 AEAEKRAMELLDMV---GLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSAL 177
Query: 164 DPY----SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
DP I L ++ T++L TH M A DR+ G++
Sbjct: 178 DPELVGEVLNVIRRLASEHD--LTMLLVTHEMGFAREFADRVCFFDKGRI 225
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 60.3 bits (146), Expect = 8e-11
Identities = 51/205 (24%), Positives = 101/205 (49%), Gaps = 14/205 (6%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML---PVSSGTAKIYNH-----DIRT 67
A+ +N++ +E+++T+ +G +G GK+T I L M+ P T KI D
Sbjct: 39 ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98
Query: 68 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-----KQVPKDLAQLEISNMIVDLGI 122
+ +R ++G+ Q F K ++ +++ + ++ K+ ++ + + + +
Sbjct: 99 SVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL 157
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
+ A LSGG Q++L +A +++DEPTS +DP S + EL+ + KK
Sbjct: 158 KDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDY 217
Query: 183 TVILTTHYMDEADLLGDRIAIIAAG 207
++I+ TH M +A + D+ A G
Sbjct: 218 SIIIVTHNMQQAARISDKTAFFLNG 242
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 60.0 bits (146), Expect = 8e-11
Identities = 47/188 (25%), Positives = 98/188 (52%), Gaps = 21/188 (11%)
Query: 33 LGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVE 92
LG +GAGK+T ++++ G L +SG+ + D T RR + + Q N LF LTV
Sbjct: 31 LGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD-HTTTPPSRRPVSMLFQENNLFSHLTVA 89
Query: 93 EHMWF---------YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSV 143
+++ +Q +++ Q+ I +++ L P + LSGG ++++++
Sbjct: 90 QNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARL--PGQ-------LSGGQRQRVAL 140
Query: 144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRI 201
A + ++LDEP S +DP R+ + L+ + ++ T+++ +H +++A + R
Sbjct: 141 ARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRS 200
Query: 202 AIIAAGKL 209
++A G++
Sbjct: 201 LVVADGRI 208
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 59.9 bits (145), Expect = 8e-11
Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 21/199 (10%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTT--IRRSLGVCPQYNAL 85
+I +G NGAGK+T ++ + GM SG+ + + T R + Q
Sbjct: 26 EILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPP 84
Query: 86 FDKLTVEEHMWFYSQLKQVPKDLAQL--EISNMIVDLGIPHKRTSLANTLSGGMQRKLSV 143
F +W Y L Q K +L +++ L + K N LSGG +++ +
Sbjct: 85 F-----AMPVWHYLTLHQPDKTRTELLNDVAGA---LALDDKLGRSTNQLSGGEWQRVRL 136
Query: 144 AMAFIG-------GSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMDEAD 195
A + + ++LDEP + +D + ++ LL ++G +++++H ++
Sbjct: 137 AAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTL 196
Query: 196 LLGDRIAIIAAGKLQCCGS 214
R ++ GKL G
Sbjct: 197 RHAHRAWLLKRGKLLASGR 215
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 59.9 bits (146), Expect = 2e-10
Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 39/227 (17%)
Query: 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
+ K FP G A++ ++ + Q+ + +G NGAGK+T + +L G +G+ I +
Sbjct: 9 GIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQE 67
Query: 65 IRTDMTTIRRSL--GVCPQYNAL--FDKLTVEEHMWFYSQLKQVP--------KDL---- 108
+R + +L GV Y L ++TV E+++ L Q+P + L
Sbjct: 68 MR--FASTTAALAAGVAIIYQELHLVPEMTVAENLY----LGQLPHKGGIVNRRLLNYEA 121
Query: 109 -AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKL-SVAMAFIGGSRTVILDEPTSGVDPY 166
QLE + +D P K S+ QR++ +A A +R + DEPTS +
Sbjct: 122 REQLEHLGVDIDPDTPLKYLSIG-------QRQMVEIAKALARNARVIAFDEPTSSL--- 171
Query: 167 SRRSIWEL--LIK--YKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
S R I +L +I+ +GR ++ +H M+E L D I + G+
Sbjct: 172 SAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRY 218
Score = 42.6 bits (101), Expect = 1e-04
Identities = 46/206 (22%), Positives = 92/206 (44%), Gaps = 35/206 (16%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH--DIRTDMTTIRRSLGVCPQ---Y 82
+I G GAG++ + +L G ++G + DIR+ IR + +CP+
Sbjct: 280 EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKA 339
Query: 83 NALFDKLTVEEHMWFYSQLKQVP----------KDLAQLEISNMIVDLGIPHKRTSLANT 132
+ +V +++ ++ + + A I ++ + P + + N
Sbjct: 340 EGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK--TPSREQLIMN- 396
Query: 133 LSGGMQRK------LSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVI 185
LSGG Q+K LS M + ++LDEPT G+D ++ I+ ++ + +G V+
Sbjct: 397 LSGGNQQKAILGRWLSEDM------KVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVL 450
Query: 186 LTTHYMDEADLLG--DRIAIIAAGKL 209
+ D ++LG DRI ++ G++
Sbjct: 451 FVSS--DLPEVLGVADRIVVMREGRI 474
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 59.6 bits (144), Expect = 3e-10
Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 24/216 (11%)
Query: 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIR 73
K ++ +N+ + + +G G GKT+ IS ++G L T IR
Sbjct: 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS-----------HAETSSVVIR 678
Query: 74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQV----PKDLAQLEISNMIVDLGIPHKRTSL 129
S+ PQ + +F+ TV E++ F S + D+ L+ +DL T +
Sbjct: 679 GSVAYVPQVSWIFNA-TVRENILFGSDFESERYWRAIDVTALQHD---LDLLPGRDLTEI 734
Query: 130 AN---TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVI 185
+SGG ++++S+A A S I D+P S +D + +++ +K + KG+T +
Sbjct: 735 GERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRV 794
Query: 186 LTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNS 221
L T+ + L+ DRI +++ G ++ G+ L S
Sbjct: 795 LVTNQLHFLPLM-DRIILVSEGMIKEEGTFAELSKS 829
Score = 51.1 bits (122), Expect = 2e-07
Identities = 46/198 (23%), Positives = 99/198 (50%), Gaps = 7/198 (3%)
Query: 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-RTDMTTIRRS 75
++GL+ + +G GAGK++ ++ L ++ + G I + D+ + +T +RR
Sbjct: 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311
Query: 76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVP--KDLAQLEISNMIVD--LGIPHKRTSLAN 131
L + PQ LF TV ++ +S+ + L + I ++I G+ + +
Sbjct: 1312 LSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGE 1370
Query: 132 TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYM 191
S G ++ LS+A A + S+ ++LDE T+ VD + I + + K T+++ H +
Sbjct: 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRL 1430
Query: 192 DEADLLGDRIAIIAAGKL 209
+ + D+I ++++G++
Sbjct: 1431 NTI-IDCDKILVLSSGQV 1447
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 58.6 bits (142), Expect = 4e-10
Identities = 57/212 (26%), Positives = 111/212 (52%), Gaps = 10/212 (4%)
Query: 3 IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
++N++KRF G V + LN+ + + + LG +G GKTT + ++ G+ + G I
Sbjct: 9 LKNITKRF--GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66
Query: 62 NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM--IVD 119
D+ T + +R + + Q ALF +++ E++ + ++ VPK+ + + +VD
Sbjct: 67 GEDV-THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVD 125
Query: 120 LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
L R + +SGG Q+++++A A I + ++ DEP S +D RRS+ E + + +
Sbjct: 126 LAGFEDR--YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ 183
Query: 180 K--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+ T + TH EA + D + ++ GK+
Sbjct: 184 QQFNITSLYVTHDQSEAFAVSDTVIVMNKGKI 215
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 59.2 bits (143), Expect = 5e-10
Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 29/209 (13%)
Query: 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSL 76
+NG+ + E + + +G G GK++ +S L+ + K+ H ++ S+
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD------KVEGH------VHMKGSV 701
Query: 77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI--PHKRTSLAN--- 131
PQ A ++ E++ F L + LE ++ DL I RT +
Sbjct: 702 AYVPQ-QAWIQNDSLRENILFGKALNE-KYYQQVLEACALLPDLEILPSGDRTEIGEKGV 759
Query: 132 TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK---KGRTVILTT 188
LSGG ++++S+A A + + D+P S VD + + I+E +I + K +T IL T
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVT 819
Query: 189 H---YMDEADLLGDRIAIIAAGKLQCCGS 214
H Y+ + D+ I +++ GK+ GS
Sbjct: 820 HGISYLPQVDV----IIVMSGGKISEMGS 844
Score = 38.4 bits (89), Expect = 0.003
Identities = 56/265 (21%), Positives = 106/265 (40%), Gaps = 54/265 (20%)
Query: 4 QNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG------ 56
+N R+ + L + +NV + + +G GAGK++ L + + G
Sbjct: 1288 RNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDG 1347
Query: 57 --TAKIYNHDIRTDMT-----------TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ 103
AKI HD+R +T ++R +L QY+ +E +W+ +L
Sbjct: 1348 LNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYS--------DEEVWWALELAH 1399
Query: 104 VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGV 163
+ ++ L + H+ LS G ++ + +A A + ++ ++LDE T+ V
Sbjct: 1400 LKTFVSALPD-------KLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452
Query: 164 DPYSRRSIWELLIKYKKGRTVILTTH----YMDEADLLGDRIAIIAAGKLQCCGSSVFLK 219
D + I + + TV+ H MD R+ ++ G++ G+ L
Sbjct: 1453 DLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYT-----RVIVLDKGEVAEFGAPSNLL 1507
Query: 220 NSFARGYYLSLDMKSAQLQAEDIGL 244
RG + S+ A+D GL
Sbjct: 1508 Q--QRGIFYSM--------AKDAGL 1522
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 57.8 bits (140), Expect = 5e-10
Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 31/214 (14%)
Query: 1 MAIQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPVSSG 56
+ +++L KR+ G+ V G+++ + S +G +G+GK+T I+ L P S+G
Sbjct: 7 LEVEDLHKRY--GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE--KP-SAG 61
Query: 57 TAKIYNHDIRTDMTT--------------IRRSLGVCPQYNALFDKLTVEEH-MWFYSQL 101
+ ++ +IR +R LG+ Q+ L+ +TV E+ + +
Sbjct: 62 SIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV 121
Query: 102 KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS 161
V K A + +GI K + LSGG Q+++++A A ++ DEPTS
Sbjct: 122 LGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTS 181
Query: 162 GVDPYSRRSIWELLIKYKK----GRTVILTTHYM 191
+DP + E+L + GRT+++ TH M
Sbjct: 182 ALDP---ELVGEVLKVMQDLAEEGRTMVVVTHEM 212
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 58.0 bits (140), Expect = 5e-10
Identities = 52/201 (25%), Positives = 94/201 (46%), Gaps = 22/201 (10%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTT---TISMLMGMLPV--SSGTAKIYNHDIR---T 67
AV +N + +T+ +G +G GK+T I+ + ++P ++G DI T
Sbjct: 54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113
Query: 68 DMTTIRRSLGVC-----PQYNALFDKLTVEEHMWFYSQLKQ----VPKDLAQLEISNMIV 118
D +R+ +G+ P ++FD + + + KQ V K L + + + +
Sbjct: 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS 173
Query: 119 DLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178
D + A LSGG Q++L VA ++LDEPTS +DP + I +L+ +
Sbjct: 174 D-----RLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL 228
Query: 179 KKGRTVILTTHYMDEADLLGD 199
+ T+++ TH M +A + D
Sbjct: 229 RGSYTIMIVTHNMQQASRVSD 249
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 58.2 bits (141), Expect = 7e-10
Identities = 46/211 (21%), Positives = 99/211 (46%), Gaps = 25/211 (11%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ I N+S + + L + +N++ + +GH G+GK+T S+LMG P++ G ++
Sbjct: 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400
Query: 61 YNHDIRT-DMTTIRRSLGVCPQ-----YNALFDKLTV-----EEHMWFYSQLKQVPKDLA 109
+ + + +R+ + + Q + +T+ EE +W Q L
Sbjct: 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVW------QA---LE 451
Query: 110 QLEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
++++ + L G+ N LS G ++ L++A + + +ILDE T+ +D +
Sbjct: 452 TVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT 511
Query: 168 RRSIWELLIKYKKGRTVILTTHYMD---EAD 195
++I + L ++ T+++ H + EAD
Sbjct: 512 EQAIQQALAAVREHTTLVVIAHRLSTIVEAD 542
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 56.5 bits (136), Expect = 8e-10
Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 21/189 (11%)
Query: 17 VNGLNVNF-YEDQI----TSF----------LGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
++ + ++F Y DQ SF G NGAGKTT + ++ G+L G
Sbjct: 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFE 61
Query: 62 NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
I+ D+ T ++ L + + LT+ E+ + + + I+ +
Sbjct: 62 RQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLY-----DIHFSPGAVGITELCRLFS 116
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KK 180
+ H LS G +R++++ ++ ++ +LDEP +D S +I + ++ K
Sbjct: 117 LEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAK 176
Query: 181 GRTVILTTH 189
G V+LT+H
Sbjct: 177 GGAVLLTSH 185
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 57.1 bits (138), Expect = 9e-10
Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 33/232 (14%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+++ LSK + GK ++ + Y ++ +G +G+GKTT + + G L +GT
Sbjct: 7 LSVSGLSKLYGPGK-GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTY 65
Query: 61 YNHDIR-TDMTTI----RRSL-----GVCPQYNALFDKLTV-------EEHMWF----YS 99
D + D+ T+ RR L G Q ++ V E M Y
Sbjct: 66 RMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG 125
Query: 100 QLKQVPKD-LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDE 158
++ +D L ++EI +D L T SGGMQ++L +A + R V +DE
Sbjct: 126 NIRAEAQDWLEEVEIDLDRID--------DLPRTFSGGMQQRLQIARNLVTRPRLVFMDE 177
Query: 159 PTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
PT G+D + + +LL + + G V++ TH + A LL DR+ ++ G+
Sbjct: 178 PTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQ 229
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 57.8 bits (140), Expect = 9e-10
Identities = 65/246 (26%), Positives = 115/246 (46%), Gaps = 43/246 (17%)
Query: 1 MAIQNLSKRFPNGK-------LAVNGL---------NVNF--YEDQITSFLGHNGAGKTT 42
M ++L++RFP+ + L V L +V+F ++ +I G GA +T
Sbjct: 230 MVGRSLTQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTD 289
Query: 43 TISMLMGMLPVSSGTAKIY-----NHDIRTDM-------TTIRRSLGVCPQYNALFDKL- 89
+ L G+ S+GT ++ NH+ + T RRS G+ + F+ L
Sbjct: 290 IVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLI 349
Query: 90 -TVEEHMWFYSQL--KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMA 146
+ + L ++ D Q I +M V P RT + +LSGG Q+K+ +
Sbjct: 350 SNIRNYKNKVGLLDNSRMKSD-TQWVIDSMRVK--TPGHRTQIG-SLSGGNQQKVIIGRW 405
Query: 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMDEADLLG--DRIAI 203
+ ++LDEPT G+D ++ I++L+ + KK + +I+ + M E LLG DRI +
Sbjct: 406 LLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPE--LLGITDRILV 463
Query: 204 IAAGKL 209
++ G +
Sbjct: 464 MSNGLV 469
Score = 55.9 bits (135), Expect = 5e-09
Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 17/215 (7%)
Query: 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
N+SK FP K A++ +N+ I + +G NGAGK+T + L G+ SG+ +
Sbjct: 3 NISKSFPGVK-ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE 61
Query: 65 IRTDMTTIRRSL--GV--CPQYNALFDKLTVEEHMWFYSQLKQ---VPKDLAQLEISNMI 117
I D + + +L G+ Q L + +V ++MW + V +D + +
Sbjct: 62 I--DFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIF 119
Query: 118 VDLGI---PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
+L I P + + TLS + + +A AF ++ VI+DEPTS + ++ +
Sbjct: 120 DELDIDIDPRAKVA---TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI 176
Query: 175 LIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGK 208
+ K K +G ++ +H M+E L D I I+ G+
Sbjct: 177 IRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 56.7 bits (137), Expect = 1e-09
Identities = 46/218 (21%), Positives = 104/218 (47%), Gaps = 18/218 (8%)
Query: 4 QNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
QN++ +P L + ++ + ++T+ +G +G+GK+T +++L G +
Sbjct: 15 QNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLD 74
Query: 62 NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP----KDLAQLE---- 112
I + + + + Q LF + ++++++ + L+ K+ AQ
Sbjct: 75 GKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAY--GLQSCSFECVKEAAQKAHAHS 131
Query: 113 -ISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
IS + G + + LSGG ++++++A A I + +ILDE TS +D S + +
Sbjct: 132 FISEL--ASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189
Query: 172 WELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+ L + + RTV++ H + + D+I ++ G++
Sbjct: 190 QQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 57.1 bits (138), Expect = 1e-09
Identities = 49/208 (23%), Positives = 99/208 (47%), Gaps = 7/208 (3%)
Query: 20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI----RTDMTTIRRS 75
+++ +IT+ +G +G GKTT + ++ G + G +I R+ + T+R+
Sbjct: 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85
Query: 76 LGVCPQYNALFDKLTVEEHM-WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLS 134
+ + Q ALF + V +++ + + Q+P L + + +G+ + + LS
Sbjct: 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELS 145
Query: 135 GGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMD 192
GGM R+ ++A A ++ DEP G DP + + +L+ + G T ++ +H +
Sbjct: 146 GGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP 205
Query: 193 EADLLGDRIAIIAAGKLQCCGSSVFLKN 220
E + D I+A K+ GS+ L+
Sbjct: 206 EVLSIADHAYIVADKKIVAHGSAQALQA 233
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 57.7 bits (139), Expect = 1e-09
Identities = 47/199 (23%), Positives = 92/199 (46%), Gaps = 10/199 (5%)
Query: 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRR 74
A+ +++ + I +G NG GK+T + G+ G + + D R
Sbjct: 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415
Query: 75 SL--GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANT 132
L + ++ LFD L + ++ L + L +LEI++ + T+
Sbjct: 416 DLFSAIFADFH-LFDDL-IGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTT---A 470
Query: 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK--YKKGRTVILTTHY 190
LS G Q++L++ A++ ++ DE + DP +R +E L+ ++G+T+I+ +H
Sbjct: 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISH- 529
Query: 191 MDEADLLGDRIAIIAAGKL 209
D+ L D+I +AAG +
Sbjct: 530 DDQYFELADQIIKLAAGCI 548
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 56.4 bits (136), Expect = 1e-09
Identities = 52/203 (25%), Positives = 98/203 (48%), Gaps = 16/203 (7%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML-PVSSGTAK 59
+ ++N+S R P L N +N + +I + +G +G GK+T +S ++G L S T +
Sbjct: 3 LCLKNVSLRLPGSCLLAN-VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61
Query: 60 IYNHDIRTDMT-TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDL---AQLEISN 115
++ ++ R DM +R +G+ Q LF L+V +++ F +P L A+ +N
Sbjct: 62 LWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLF-----ALPATLKGNARRNAAN 116
Query: 116 MIVD-LGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
++ G+ TLSGG + ++++ A + + ++LDEP S +D R +
Sbjct: 117 AALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQW 176
Query: 175 LIKYKK--GRTVILTTHYMDEAD 195
+ + G + TH D D
Sbjct: 177 VFSEVRAAGIPTVQVTH--DLQD 197
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 56.9 bits (137), Expect = 1e-09
Identities = 50/222 (22%), Positives = 106/222 (47%), Gaps = 12/222 (5%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT--- 57
+A +L R+ + + + GLN++F +T +G NG GK+T L G+L G
Sbjct: 2 LATSDLWFRYQDEPV-LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60
Query: 58 -AKIYNHDIRTDMTTIRRSLGVC---PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEI 113
K ++ R + +R+ + P+ + ++ + F + VP+ +
Sbjct: 61 QGKPLDYSKR-GLLALRQQVATVFQDPEQQIFYTD--IDSDIAFSLRNLGVPEAEITRRV 117
Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
+ + H R LS G ++++++A A + +R ++LDEPT+G+DP R +
Sbjct: 118 DEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIA 177
Query: 174 LLIK-YKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
++ + +G VI+++H +D + D + ++ G++ G+
Sbjct: 178 IIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 56.4 bits (137), Expect = 1e-09
Identities = 49/224 (21%), Positives = 99/224 (44%), Gaps = 15/224 (6%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP---VSSGTAK 59
I++L K + G+N+ E ++ + +G NG+GK+T +MG P V+ G
Sbjct: 6 IKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG-HPKYEVTEGEIL 64
Query: 60 IYNHDIRTDMTT---IRRSLGVCPQYNALFDKLTVEEHM-WFYSQLKQVPKDLAQL--EI 113
DI +++ R + + QY +T + + + + L + E+
Sbjct: 65 FDGEDI-LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKEL 123
Query: 114 SNMIVDLGIPHK--RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
LG+ + + SGG +++ + + + ILDEP SG+D + + +
Sbjct: 124 KEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIV 183
Query: 172 WELLIKYK-KGRTVILTTHYMDEADLLG-DRIAIIAAGKLQCCG 213
E + + +GR V++ THY D + D++ ++ G++ G
Sbjct: 184 AEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 57.3 bits (139), Expect = 2e-09
Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 25/201 (12%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
++S + N + V ++ Q + +G GAGK+T I++L + SG I
Sbjct: 338 DDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGT 397
Query: 64 DIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE---------- 112
DIRT ++RR++ V Q LF++ ++E+++ +V + A E
Sbjct: 398 DIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNI-------RVGRPDATDEEMRAAAERAQ 449
Query: 113 ISNMIVDLGIPHKRTSLA----NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
+ I P ++ LSGG +++L++A A + +ILDE TS +D +
Sbjct: 450 AHDFI--ERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETE 507
Query: 169 RSIWELLIKYKKGRTVILTTH 189
+ L + KGRT + H
Sbjct: 508 AKVKAALDELMKGRTTFIIAH 528
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 56.6 bits (137), Expect = 2e-09
Identities = 54/224 (24%), Positives = 110/224 (49%), Gaps = 20/224 (8%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
I N+ K F ++ +N ++++ Q+ + LG +G+GKTT + ++ G+ +SG + +
Sbjct: 5 IANIKKSFGRTQV-LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHG 63
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVP--KDLAQLEISNMIVDL 120
D+ + + R +G Q+ ALF +TV +++ F L +P + I + L
Sbjct: 64 TDV-SRLHARDRKVGFVFQHYALFRHMTVFDNIAF--GLTVLPRRERPNAAAIKAKVTQL 120
Query: 121 ----GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL- 175
+ H LSGG ++++++A A + ++LDEP +D R+ + L
Sbjct: 121 LEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLR 180
Query: 176 -----IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
+K+ T + TH +EA + DR+ +++ G ++ G+
Sbjct: 181 QLHEELKF----TSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 56.5 bits (137), Expect = 3e-09
Identities = 53/206 (25%), Positives = 102/206 (49%), Gaps = 16/206 (7%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI----RTDMTT 71
AV+G+++ Q +G +G+GK+T L+ ++P S G + DI R +M
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRP 360
Query: 72 IRRSLGVCPQ--YNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD----LGI-PH 124
+RR + V Q Y +L ++TV + + L+ L+ E +++ +G+ P
Sbjct: 361 LRRRMQVVFQDPYGSLSPRMTVGQII--EEGLRVHEPKLSAAERDQRVIEALEEVGLDPA 418
Query: 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGR 182
R + SGG ++++++A A I ++LDEPTS +D + + +LL ++ K G
Sbjct: 419 TRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL 478
Query: 183 TVILTTHYMDEADLLGDRIAIIAAGK 208
+ + +H + L R+ ++ GK
Sbjct: 479 SYLFISHDLAVVRALCHRVIVMRDGK 504
Score = 54.2 bits (131), Expect = 2e-08
Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 41/240 (17%)
Query: 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
++I+NLS F AV G++ + + + +G +G+GK+ T ++G+LP S
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLP--SPA 64
Query: 58 AKIYNHDIRTDMTTIRRSLGVCP-QYNALF-DKLTV--EEHMWFYSQLKQVPKDLAQL-- 111
A + I D + L Q + +K+ + +E M + L + K LA++
Sbjct: 65 AAHPSGSILFDGEDL---LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLR 121
Query: 112 ------------EISNMIVDLGIPHKRTSLA---NTLSGGMQRKLSVAMAFIGGSRTVIL 156
++ +GIP L + LSGG ++++ +AMA +I
Sbjct: 122 LHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIA 181
Query: 157 DEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADL-----LGDRIAIIAAGKL 209
DEPT+ +D + I +LL ++ + G ++ TH DL DR+ ++ G++
Sbjct: 182 DEPTTALDVTVQAQILDLLKELQAELGMAILFITH-----DLGIVRKFADRVYVMQHGEI 236
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 54.8 bits (133), Expect = 4e-09
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 27/173 (15%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
QI G NGAGKT+ + +L G+ +G IR + L +
Sbjct: 31 QIE---GPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKT 87
Query: 88 KLTVEEHMWFYSQLKQVPKD------LAQLEISNMIVDLG----IPHKRTSLANTLSGGM 137
+LT E++ FY +L D LAQ V L +P LS G
Sbjct: 88 ELTALENLRFYQRLHGPGDDEALWEALAQ-------VGLAGFEDVP------VRQLSAGQ 134
Query: 138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
QR++++A ++ + ILDEP + +D + LL ++ ++G VILTTH
Sbjct: 135 QRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 54.3 bits (131), Expect = 5e-09
Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 20/210 (9%)
Query: 3 IQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
++NLS R+ P+ + ++ + +G GAGK+T I L L G +I
Sbjct: 9 VENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEID 68
Query: 62 NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
DI T + +R SL + PQ LF T+ ++ + + + L +S
Sbjct: 69 GIDISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFDEYSDE-EIYGALRVS------ 120
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
LS G ++ L +A A + R ++LDE T+ +D + I + + +
Sbjct: 121 -------EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT 173
Query: 181 GRTVILTTHYMDE-ADLLGDRIAIIAAGKL 209
T++ H + D D+I ++ AG++
Sbjct: 174 NSTILTIAHRLRTIIDY--DKILVMDAGEV 201
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 55.9 bits (135), Expect = 5e-09
Identities = 51/203 (25%), Positives = 101/203 (49%), Gaps = 12/203 (5%)
Query: 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR-TDMTTIR 73
A++GLN+ + + +G +GAGK+T +L+ SG + D+R D +R
Sbjct: 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR 413
Query: 74 RSLGVCPQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL- 129
+ + PQ LF +V E++ + + ++V + A+ ++ + +P +
Sbjct: 414 ARMALVPQDPVLFAA-SVMENIRYGRPDATDEEV-EAAARAAHAHEFI-SALPEGYDTYL 470
Query: 130 ---ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVIL 186
TLSGG ++++++A A + + ++LDE TS +D S + + + L KGRT ++
Sbjct: 471 GERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLI 530
Query: 187 TTHYMDEADLLGDRIAIIAAGKL 209
H + L DRI ++ G++
Sbjct: 531 IAHRLATV-LKADRIVVMDQGRI 552
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 55.8 bits (135), Expect = 5e-09
Identities = 49/209 (23%), Positives = 81/209 (38%), Gaps = 49/209 (23%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ ++NLS R P+G+ ++ LN + G +GAGKT+ + L G+ P SG
Sbjct: 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI-- 450
Query: 61 YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ--------LKQV------PK 106
P +AL F Q L++
Sbjct: 451 -----------------SMPADSALL----------FLPQRPYLPQGTLREALCYPNAAP 483
Query: 107 DLAQLEISNMIVDLGIPHKRTSLANT------LSGGMQRKLSVAMAFIGGSRTVILDEPT 160
D + E+ ++ +G+ L LSGG Q++L+ A + + V LDE T
Sbjct: 484 DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543
Query: 161 SGVDPYSRRSIWELLIKYKKGRTVILTTH 189
S +D + +++LL + TVI H
Sbjct: 544 SALDEETEDRLYQLLKEELPDATVISVGH 572
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 54.5 bits (132), Expect = 7e-09
Identities = 61/246 (24%), Positives = 101/246 (41%), Gaps = 61/246 (24%)
Query: 1 MAIQNLSKRFPNGKLAVNGL-NVNF--YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
++++ L+K + K G +V+F Y ++ +G +G+GKTT ++ L L +G
Sbjct: 7 LSVRGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGE 62
Query: 58 AKIY--NHDIRTDMTTI----RRSL-----GVCPQYNALFDKLTV--------------E 92
Y D+ + RR L G Q+ ++ V
Sbjct: 63 V-HYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGA 121
Query: 93 EHMWFYSQLKQVPKD-LAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGS 151
H Y ++ D L ++EI +D L T SGGMQ++L +A +
Sbjct: 122 RH---YGDIRATAGDWLERVEIDAARID--------DLPTTFSGGMQQRLQIARNLVTHP 170
Query: 152 RTVILDEPTSGVDPYS---------RRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIA 202
R V +DEPT G+D S R + EL G V++ TH + A LL R+
Sbjct: 171 RLVFMDEPTGGLD-VSVQARLLDLLRGLVREL------GLAVVIVTHDLAVARLLAHRLL 223
Query: 203 IIAAGK 208
++ G+
Sbjct: 224 VMKQGR 229
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 54.3 bits (131), Expect = 7e-09
Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 34 GHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVE 92
G +G GK+T + ++ ++ +SGT DI T R+ + C Q LF TV
Sbjct: 40 GPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVY 98
Query: 93 EHMWFYSQL-KQVP------KDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAM 145
+++ F Q+ Q P DL + + + I+ I LSGG ++++S+
Sbjct: 99 DNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNI--------AELSGGEKQRISLIR 150
Query: 146 AFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILTTHYMDE 193
+ ++LDE TS +D ++ ++ E++ +Y ++ V+ TH DE
Sbjct: 151 NLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE 200
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 54.5 bits (132), Expect = 7e-09
Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 46/227 (20%)
Query: 2 AIQNLSKRFPNGK--LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
++ L+K A+ ++ Y+ + +GHNGAGK+T + ++ G+ +SG K
Sbjct: 26 RLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVK 85
Query: 60 I-------------YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK 106
+ ++ ++ T I L LT +E + +
Sbjct: 86 VTGKVAPLIELGAGFDPEL-TGRENIY--------LRGLILGLTRKE-------IDEKVD 129
Query: 107 DLAQL-EISNMIVDLGIPHKRTSLANTLSGGMQRKL--SVAMAFIGGSRTVILDEPTSGV 163
++ + E+ + I D + T S GM +L SVA ++LDE +
Sbjct: 130 EIIEFAELGDFI-DQPV--------KTYSSGMYARLAFSVATHV--EPDILLLDEVLAVG 178
Query: 164 DPY-SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
D + + L +K +T++L +H + DR + G++
Sbjct: 179 DAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQI 225
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 55.5 bits (134), Expect = 8e-09
Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 18/186 (9%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
+T+ +G +GAGKTT +++L + T + R ++ +RS+G Q +
Sbjct: 790 TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLP 849
Query: 88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTSLANTLSG----GM---QR 139
TV E + F + L+Q PK +++ E V+ I + S A+ + G G+ QR
Sbjct: 850 TSTVRESLRFSAYLRQ-PKSVSKSE-KMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQR 907
Query: 140 K-LSVAMAFIGGSRTVI-LDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH-----YM 191
K L++ + + + ++ LDEPTSG+D + SI +L+ K G+ ++ T H
Sbjct: 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILF 967
Query: 192 DEADLL 197
+E D L
Sbjct: 968 EEFDRL 973
Score = 40.9 bits (96), Expect = 5e-04
Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 47/197 (23%)
Query: 10 FPNG--KLAVNGLNVNFYEDQITSF------------------LGHNGAGKTTTISMLMG 49
FPN K+ G +F LG G+G +T + +
Sbjct: 50 FPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS 109
Query: 50 -----MLPVSSGTAKIYN----HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ 100
+ V Y+ +I R + + + F LTV E + F ++
Sbjct: 110 NTDGFHIGVEGVIT--YDGITPEEI---KKHYRGDVVYNAETDVHFPHLTVGETLDFAAR 164
Query: 101 LKQV---PKDLAQLEISNMIVDL-----GIPHKR-TSLANTL----SGGMQRKLSVAMAF 147
K P +++ E + I D+ G+ H R T + N SGG ++++S+A A
Sbjct: 165 CKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEAS 224
Query: 148 IGGSRTVILDEPTSGVD 164
+GG++ D T G+D
Sbjct: 225 LGGAKIQCWDNATRGLD 241
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 55.1 bits (133), Expect = 8e-09
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 25/225 (11%)
Query: 20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-RTDMTTIRRSLGV 78
LN++ + +G +G+GK+T +L + G + D+ D +RR +GV
Sbjct: 476 LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGV 535
Query: 79 CPQYNALFDKLTVE-----------EHMWFYSQLKQVPKDLAQL-EISNMIVDLGIPHKR 126
Q N LF + + EH+ ++L +++L + N V
Sbjct: 536 VLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG------- 588
Query: 127 TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVIL 186
LSGG ++++++A A +G R +I DE TS +D S I + + +GRTVI+
Sbjct: 589 -EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVII 647
Query: 187 TTHYMDEADLLGDRIAIIAAGKLQCCGSS---VFLKNSFARGYYL 228
H + DRI ++ G++ G + L+ +AR +
Sbjct: 648 IAHRLS-TVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQ 691
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 54.8 bits (132), Expect = 9e-09
Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 31/216 (14%)
Query: 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH----DIRTDMTTI 72
V+ ++ + +I G GAG+T + L G P ++ + DIR I
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP-GKFEGNVFINGKPVDIRNPAQAI 334
Query: 73 RRSL----------GVCPQYN-------ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
R + G+ P ++ + + ++L+ + + +L++
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT 394
Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
L I LSGG Q+K +A + R +ILDEPT GVD ++ I++L+
Sbjct: 395 ASPFLPI--------GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLI 446
Query: 176 IKY-KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
+ ++G +I+ + + E L DR+ +I GKL+
Sbjct: 447 NQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
Score = 54.4 bits (131), Expect = 1e-08
Identities = 49/221 (22%), Positives = 102/221 (46%), Gaps = 17/221 (7%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ ++ + K F K A++G+++ + G NGAGK+T + +L G+ P + +I
Sbjct: 2 LEMKGIVKTFGGVK-ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60
Query: 61 Y-------NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL----KQVPKDLA 109
Y +IR T R + + Q L +L+V E+++ +++ ++ +
Sbjct: 61 YWSGSPLKASNIR---DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAM 117
Query: 110 QLEISNMIVDLGIPHKRTSLA-NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
L N++ +L + + GG Q+ + +A A +R +ILDEP+S +
Sbjct: 118 YLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKET 177
Query: 169 RSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGK 208
+ +++ K G + +H ++E + D I +I G+
Sbjct: 178 EILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 54.2 bits (130), Expect = 9e-09
Identities = 49/227 (21%), Positives = 105/227 (46%), Gaps = 18/227 (7%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ + +L KR+ ++ + G+++ + S +G +G+GK+T + + + S G+ +
Sbjct: 6 LNVIDLHKRYGEHEV-LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVV 64
Query: 61 YNHDIR--------------TDMTTIRRSLGVCPQYNALFDKLTVEEH-MWFYSQLKQVP 105
I + +R L + Q+ L+ +TV E+ M Q+ +
Sbjct: 65 NGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS 124
Query: 106 KDLAQLEISNMIVDLGIPHK-RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
K A+ + +GI + + LSGG Q+++S+A A ++ DEPTS +D
Sbjct: 125 KQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD 184
Query: 165 PYSRRSIWELLIKY-KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
P + ++ + ++G+T+++ TH M A + + + GK++
Sbjct: 185 PELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 54.0 bits (130), Expect = 1e-08
Identities = 60/230 (26%), Positives = 110/230 (47%), Gaps = 29/230 (12%)
Query: 3 IQNLSKRF--PNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP---VSSG 56
+++L F P+G + AVN LN + + +G +G+GK+ T LMG+L G
Sbjct: 15 VKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGG 74
Query: 57 TAKIYNHDI----RTDMTTIRRSLGVCPQYNALF-DKLT-VEEHMWFYSQL-------KQ 103
+A +I ++ +R Q + +F D +T + +M QL K
Sbjct: 75 SATFNGREILNLPEKELNKLRAE-----QISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG 129
Query: 104 VPKDLAQLEISNMIVDLGIP--HKRTSL-ANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160
+ K A E M+ + +P KR + + SGGM++++ +AMA + + +I DEPT
Sbjct: 130 MSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPT 189
Query: 161 SGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGK 208
+ +D + I LL + K+ +I+ TH + + D++ ++ AG+
Sbjct: 190 TALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGR 239
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 53.5 bits (128), Expect = 2e-08
Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 15/192 (7%)
Query: 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-RTDMTTI 72
L V + T+ +G NG GK+T + L ++ + G + I +
Sbjct: 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79
Query: 73 RRSLGVCPQYNALFDKLTVEE--------HMWFYSQLKQVPKDLAQLEISNMIVDLGIPH 124
R +G+ Q +TV+E H +++ ++ ++ ++ + GI H
Sbjct: 80 ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEE----AVTKAMQATGITH 135
Query: 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGR 182
+TLSGG +++ +AM + ++LDEPT+ +D + + ELL + +KG
Sbjct: 136 LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGY 195
Query: 183 TVILTTHYMDEA 194
T+ H +++A
Sbjct: 196 TLAAVLHDLNQA 207
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 53.2 bits (128), Expect = 2e-08
Identities = 52/215 (24%), Positives = 97/215 (45%), Gaps = 26/215 (12%)
Query: 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP----VSSGT----------AKIYN 62
V+G+++ ++ + +G +G+GK+ T + +G+LP ++G +
Sbjct: 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRG 78
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
I T M R + +N L T+ H P D A L + V L
Sbjct: 79 RKIATIMQNPRSA------FNPL---HTMHTHARETCLALGKPADDATLTAALEAVGLEN 129
Query: 123 PHKRTSL-ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYK 179
+ L +SGGM +++ +A+A + + +I DEPT+ +D ++ I +LL I K
Sbjct: 130 AARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK 189
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
+ ++L TH M L D +A+++ G++ G
Sbjct: 190 RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGD 224
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 52.0 bits (125), Expect = 2e-08
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 133 LSGGMQRKLSVAMAF----IGGSRTVILDEPTSGVDPYSRRSIWELLIK-YKKGRTVILT 187
LSGG + ++A+ + ILDE G+DP +++ E +++ KG VI+
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 188 THYMDEADLLGDRIAII 204
TH + A+L D++ I
Sbjct: 138 THLPELAELA-DKLIHI 153
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 54.1 bits (130), Expect = 2e-08
Identities = 48/203 (23%), Positives = 93/203 (45%), Gaps = 10/203 (4%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
++++ F N V ++ Q + +G GAGKTT I++L + + G I
Sbjct: 338 RHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI 397
Query: 64 DIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNMIVD 119
DI T ++R+S+ Q LF++ ++ E++ + ++V + + I+
Sbjct: 398 DINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGREGATDEEVYEAAKAAAAHDFILK 456
Query: 120 L--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK 177
G N LSGG +++L++A A + + ++LDE TS +D + + +
Sbjct: 457 RSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDA 516
Query: 178 YKKGRTVILTTHYMD---EADLL 197
+K RT + H + ADL+
Sbjct: 517 LRKNRTTFIIAHRLSTVRNADLV 539
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 53.3 bits (128), Expect = 2e-08
Identities = 49/187 (26%), Positives = 92/187 (49%), Gaps = 11/187 (5%)
Query: 33 LGHNGAGKTTTISMLMGMLPVSSGTAKIYNH--DIRTDMTT-----IRRSLG-VCPQYNA 84
LG +GAGK++ + +L + SGT I + D + +RR++G V QYN
Sbjct: 34 LGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN- 92
Query: 85 LFDKLTVEEHMWFYS-QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSV 143
L+ LTV+E++ ++ + KD A ++ L + LSGG Q+++++
Sbjct: 93 LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI 152
Query: 144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIA 202
A A + + ++ DEPT+ +DP I ++ + + G T ++ TH ++ A R+
Sbjct: 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVV 212
Query: 203 IIAAGKL 209
+ G +
Sbjct: 213 YMENGHI 219
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 52.5 bits (126), Expect = 4e-08
Identities = 50/227 (22%), Positives = 100/227 (44%), Gaps = 22/227 (9%)
Query: 3 IQNLSKRFPNGKL--------AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS 54
+++++ + G L + ++++ E + LG +G GK+T +L+G+ +
Sbjct: 5 VRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA 64
Query: 55 SGTAKIYNHDI----RTDMTTIRRSLGVCPQ--YNALFDKLTVE----EHMWFYSQLKQV 104
GT D+ R RR + + Q +A+ ++TV E + + L +
Sbjct: 65 QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDES 124
Query: 105 PKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
+ E+ +M V L L LSGG +++++A A + ++LDE S +D
Sbjct: 125 EQKARIAELLDM-VGLRSEDAD-KLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182
Query: 165 PYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+ I ELL K ++ G + TH + R+A++ G++
Sbjct: 183 MVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 51.8 bits (124), Expect = 8e-08
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMD 192
LSGG Q++L +A +++DEP S +DP + I +L+ + + TV++ TH M
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQ 260
Query: 193 EADLLGDRIAIIAAG 207
+A + D+ A+ G
Sbjct: 261 QAARISDQTAVFLTG 275
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 52.2 bits (125), Expect = 9e-08
Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 40/240 (16%)
Query: 15 LAVNGLNVNFYEDQIT-------SF----------LGHNGAGKTTTISMLMGMLPVSSGT 57
LAV LN+ F ++Q SF +G +G+GK+ T LM +L + G
Sbjct: 13 LAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGL 72
Query: 58 AKIYNHDIR--------------TDMTTIRRS-LGVCPQ--YNALFDKLTVEEHMWFYSQ 100
+ +R M +R + + + Q +L TV E + +
Sbjct: 73 VQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIR 132
Query: 101 LKQ-VPKDLAQLEISNMIVDLGIPHKRTSLA---NTLSGGMQRKLSVAMAFIGGSRTVIL 156
L Q ++ A +E M+ + IP +T L+ + LSGGM++++ +AMA +I
Sbjct: 133 LHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIA 192
Query: 157 DEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
DEPT+ +D + I +L+ ++ + VI TH M + DR+ ++ G+ GS
Sbjct: 193 DEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
Score = 44.5 bits (105), Expect = 3e-05
Identities = 52/234 (22%), Positives = 103/234 (44%), Gaps = 30/234 (12%)
Query: 1 MAIQNLSKRFP--NGKL--------AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM 50
+ ++NL RFP +G L AV ++ + + + S +G +G+GK+TT L+ +
Sbjct: 314 LQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL 373
Query: 51 LPVSSGTAKIYNHDIRT----DMTTIRRSLGVCPQ--YNALFDKLTVEEHMWFYSQLKQV 104
+ G I T + +RR + Q Y +L + TV S ++ +
Sbjct: 374 VESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVG-----DSIMEPL 428
Query: 105 ------PKDLAQLEISNMIVDLGI-PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILD 157
P A ++ ++ +G+ P + SGG ++++ +A A + +I D
Sbjct: 429 RVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIAD 488
Query: 158 EPTSGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
E S +D R I LL+ ++ G + +H M + + R+A++ G++
Sbjct: 489 EAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 51.8 bits (124), Expect = 1e-07
Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 24/212 (11%)
Query: 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR-TDMTTIRRS 75
++G++++ E + +G NGAGKTT + + G L ++GT + D+ R
Sbjct: 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78
Query: 76 LGVCPQYNAL---FDKLTVEE-----HM-----WFYSQLKQVPKDLAQLEISNMIVDLGI 122
+ PQ +L FD V E H W + V + + + ++ D +
Sbjct: 79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQF-ADRPV 137
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKG 181
+LSGG ++++ +A A + ++LDEPT+ +D + EL+ + G
Sbjct: 138 --------TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDG 189
Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
+T + H +D A D + ++A G+++ G
Sbjct: 190 KTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 52.0 bits (125), Expect = 1e-07
Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 24/224 (10%)
Query: 4 QNLSKRFPN--GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
Q++S +PN + GL + ++ + +G +G+GK+T ++L + + G +
Sbjct: 482 QDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541
Query: 62 NHDIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
+ D + R + + Q LF +V E++ + L P + EI
Sbjct: 542 GVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAY--GLTDTPDE----EIMAAAKAA 594
Query: 121 GIPHKRTSLANT-----------LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRR 169
N LSGG ++++++A A + R +ILDE TS +D +
Sbjct: 595 NAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQ 654
Query: 170 SIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCG 213
+ E + + RTV+L H + + D+I ++ G + G
Sbjct: 655 LLQES--RSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMG 695
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 51.0 bits (122), Expect = 1e-07
Identities = 48/202 (23%), Positives = 95/202 (47%), Gaps = 21/202 (10%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ + +++ + NG A+ + I + +G NG+GK+T LMG + ++SG I
Sbjct: 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI 66
Query: 61 YNHDIRTDMTTIRRSL-GVCPQYNAL---FDKLTVEE--------HMWFYSQLKQVPKDL 108
R ++++L PQ + F L VE+ HM + + K
Sbjct: 67 LGQPTRQ---ALQKNLVAYVPQSEEVDWSFPVL-VEDVVMMGRYGHMGWL----RRAKKR 118
Query: 109 AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
+ ++ + + + R LSGG ++++ +A A + ++LDEP +GVD +
Sbjct: 119 DRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178
Query: 169 RSIWELLIKYK-KGRTVILTTH 189
I LL + + +G+T++++TH
Sbjct: 179 ARIISLLRELRDEGKTMLVSTH 200
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 51.5 bits (124), Expect = 1e-07
Identities = 53/190 (27%), Positives = 97/190 (51%), Gaps = 19/190 (10%)
Query: 33 LGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTV 91
+G +G+GK+T +L+G+ P +SG+ ++ D+R D + R +G PQ LFD T+
Sbjct: 368 IGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TI 426
Query: 92 EEH---MWFYSQLKQVPKDLAQL-EISNMIVDLGIPHK-RTSLAN---TLSGGMQRKLSV 143
E+ + ++V + A+L + +I+ L P T + TLSGG ++++++
Sbjct: 427 AENIARFGEEADPEKVIE-AARLAGVHELILRL--PQGYDTRIGEGGATLSGGQRQRIAL 483
Query: 144 AMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLG--DR 200
A A G V+LDEP S +D ++ ++ K G TV++ H L D+
Sbjct: 484 ARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH---RPSALASVDK 540
Query: 201 IAIIAAGKLQ 210
I ++ G++
Sbjct: 541 ILVLQDGRIA 550
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 49.9 bits (119), Expect = 1e-07
Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 31/182 (17%)
Query: 20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD------MTTIR 73
L++ F IT G NG GK++ + M+ G++ SSG IY + + T I
Sbjct: 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSG--NIYYKNCNINNIAKPYCTYIG 76
Query: 74 RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLAN- 131
+LG L ++TV E++ F+S++ S + I + K L +
Sbjct: 77 HNLG-------LKLEMTVFENLKFWSEIYN----------SAETLYAAIHYFKLHDLLDE 119
Query: 132 ---TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL-IKYKKGRTVILT 187
+LS GMQ+ +++A S +LDE + + +R + L+ +K G V+L+
Sbjct: 120 KCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLS 179
Query: 188 TH 189
+H
Sbjct: 180 SH 181
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 50.2 bits (120), Expect = 2e-07
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 34 GHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVE 92
G NGAGKTT + +L G+L V SG +I D + LG P L L+
Sbjct: 44 GDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLP---GLKADLSTL 100
Query: 93 EHMWFYSQL-----KQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147
E++ F L KQ+P + + +G+ +L LS G +++L++A +
Sbjct: 101 ENLHFLCGLHGRRAKQMP--------GSALAIVGLAGYEDTLVRQLSAGQKKRLALARLW 152
Query: 148 IGGSRTVILDEPTSGVDP 165
+ + +LDEP + +D
Sbjct: 153 LSPAPLWLLDEPYANLDL 170
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 51.7 bits (124), Expect = 2e-07
Identities = 52/202 (25%), Positives = 99/202 (49%), Gaps = 30/202 (14%)
Query: 21 NVNFYEDQITSFL---GHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLG 77
N+N + + S + G G GKT+ IS ++G LP S + IR ++
Sbjct: 635 NINL-DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS-----------VVIRGTVA 682
Query: 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI-P-HKRTSLAN---T 132
PQ + +F+ TV +++ F S + A ++++ + DL + P T +
Sbjct: 683 YVPQVSWIFNA-TVRDNILFGSPFDPERYERA-IDVTALQHDLDLLPGGDLTEIGERGVN 740
Query: 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTT--- 188
+SGG ++++S+A A S I D+P S +D + R +++ IK + +G+T +L T
Sbjct: 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQL 800
Query: 189 HYMDEADLLGDRIAIIAAGKLQ 210
H++ + DRI ++ G ++
Sbjct: 801 HFLSQV----DRIILVHEGMIK 818
Score = 37.8 bits (88), Expect = 0.005
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 34 GHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTVE 92
G GAGK++ ++ L ++ + G I DI + +R+ LG+ PQ LF TV
Sbjct: 1272 GRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVR 1330
Query: 93 -------EH----MW---FYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQ 138
EH +W + LK V + + LG+ + + S G +
Sbjct: 1331 FNLDPFNEHNDADLWESLERAHLKDVIRRNS----------LGLDAEVSEAGENFSVGQR 1380
Query: 139 RKLSVAMAFIGGSRTVILDEPTSGVD 164
+ LS+A A + S+ ++LDE T+ VD
Sbjct: 1381 QLLSLARALLRRSKILVLDEATAAVD 1406
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 51.2 bits (123), Expect = 2e-07
Identities = 43/199 (21%), Positives = 86/199 (43%), Gaps = 40/199 (20%)
Query: 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTI 72
A+ +N + + +G +G+GK+T ++L + G + HD+R + ++
Sbjct: 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASL 415
Query: 73 RRSLGVCPQYNALF-------------DKLTVEE---------HMWFYSQLKQVPKDLAQ 110
R + + Q LF ++ + E+ M F +++
Sbjct: 416 RNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNG------ 469
Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
+ +I + G+ LSGG ++++++A A + S +ILDE TS +D S R+
Sbjct: 470 --LDTVIGENGV---------LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518
Query: 171 IWELLIKYKKGRTVILTTH 189
I L + +K RT ++ H
Sbjct: 519 IQAALDELQKNRTSLVIAH 537
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 51.1 bits (123), Expect = 2e-07
Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 30/220 (13%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
+N++ + + +V +N+ ++ +G NG+GK+T +L G+ SG +I
Sbjct: 326 RNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSG--EILLD 383
Query: 64 DIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-----KQVPKDLAQ--LEISNM 116
Y LF V + QL K L + LE M
Sbjct: 384 GKPVTAEQPED-------YRKLFS--AVFTDFHLFDQLLGPEGKPANPALVEKWLERLKM 434
Query: 117 IVDLGIPHKRTSLANT-LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
L + R ++N LS G +++L++ +A ++LDE + DP+ RR +++L
Sbjct: 435 AHKLELEDGR--ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL 492
Query: 176 IKY--KKGRTVILTTH---YMDEADLLGDRIAIIAAGKLQ 210
+ + G+T+ +H Y A DR+ + G+L
Sbjct: 493 LPLLQEMGKTIFAISHDDHYFIHA----DRLLEMRNGQLS 528
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 51.0 bits (122), Expect = 2e-07
Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 27/211 (12%)
Query: 10 FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM 69
+ + V +N+ ++ +G NG+GK+T +L G+ SG I D
Sbjct: 332 YQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE-------ILLDG 384
Query: 70 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-ISNMIVDLGIPHKRT- 127
+ S Y LF V + QL P+ A + I + L + HK +
Sbjct: 385 KPV--SAEQLEDYRKLFS--AVFSDYHLFDQLLG-PEGKASPQLIEKWLQRLELAHKTSL 439
Query: 128 ---SLANT-LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--G 181
+N LS G +++L++ +A + ++LDE + DP RR +++L+ K G
Sbjct: 440 NDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQG 499
Query: 182 RTVILTTH---YMDEADLLGDRIAIIAAGKL 209
+T+ +H Y A DR+ + G+L
Sbjct: 500 KTIFAISHDDHYFIHA----DRLLEMRNGQL 526
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 49.5 bits (119), Expect = 2e-07
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 33/164 (20%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
+T+ +G +GAGKTT + +L G T +I + D +RS G Q +
Sbjct: 34 TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKN-FQRSTGYVEQQDVHSP 92
Query: 88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH-KRTSLANTLSGGMQRKLSVAMA 146
LTV E L S ++ L + KR ++ L A
Sbjct: 93 NLTVRE----------------ALRFSALLRGLSVEQRKRLTIGVEL---------AAKP 127
Query: 147 FIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTH 189
I + LDEPTSG+D + +I L K G+ ++ T H
Sbjct: 128 SI-----LFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 50.3 bits (121), Expect = 3e-07
Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 21/219 (9%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY-- 61
+N++K F K A++ +++ +I S G NGAGK+T + +L G+ P + +I
Sbjct: 9 KNITKTFGGVK-ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFE 67
Query: 62 -----NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQ---VPKDLAQLEI 113
+IR T R + + Q AL +L+V E+++ +++ + D L
Sbjct: 68 GEELQASNIR---DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRA 124
Query: 114 SNMIVDLGI---PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
++ L + P L G Q+ + +A A +R +ILDEPT+ +
Sbjct: 125 QKLLAQLKLDINPATPVG---NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAV 181
Query: 171 IWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGK 208
+ +++ K G I +H ++E + D I +I G+
Sbjct: 182 LLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
Score = 44.9 bits (107), Expect = 2e-05
Identities = 51/213 (23%), Positives = 93/213 (43%), Gaps = 31/213 (14%)
Query: 21 NVNFY--EDQITSFLGHNGAGKTTTISMLMGMLP-VSSGTAKIYNH--DIRTDMTTIRRS 75
+V+F +I G GAG+T + L G P G I IR I +
Sbjct: 280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQG 339
Query: 76 LGVCP--------------QYN---ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
+ + P N A D+ T + ++LK + + + +L++
Sbjct: 340 IAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVK---- 395
Query: 119 DLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY 178
++A LSGG Q+K +A + + +ILDEPT G+D ++ I++L+ +
Sbjct: 396 ---TASPELAIAR-LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQL 451
Query: 179 -KKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
++G +I+ + + E L DR+ ++ GKL+
Sbjct: 452 VQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 49.4 bits (118), Expect = 3e-07
Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIR-----RSLGVCPQY 82
+ + +G +G+GK+T +++L G+ SSG + + R + +G Q
Sbjct: 37 ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQS 96
Query: 83 NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLS 142
L L E++ + L+ ++ ++ LG+ + L LSGG Q++++
Sbjct: 97 FMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVA 156
Query: 143 VAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILTTH 189
+A AF G + DEPT +D + I +LL + G T+IL TH
Sbjct: 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTH 205
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 49.2 bits (118), Expect = 5e-07
Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 26/226 (11%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG--MLPVSSGTAKI 60
I++L K + G+N+ + +I + +G NG+GK+T + G V+SGT
Sbjct: 3 IKDLHVSV-EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61
Query: 61 YNHDIRTDMTTIRRS---LGVCPQY--------NALFDKLTVEEHMWFYSQLKQVPKDLA 109
D+ ++ R+ L + QY N F + + S + P DL
Sbjct: 62 KGQDL-LELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARR---SARGEEPLDLL 117
Query: 110 QL--EISNMIVDLGIPHK--RTSLANTLSGGMQRKLSV-AMAFIGGSRTVILDEPTSGVD 164
+ + LG+ + S+ SGG +++ + MA + + ILDE SG+D
Sbjct: 118 DFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALL-EPKLAILDEIDSGLD 176
Query: 165 PYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLG-DRIAIIAAGK 208
+ + + E + + + R+ ++ THY + + D + ++ G+
Sbjct: 177 IDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGR 222
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 48.2 bits (115), Expect = 8e-07
Identities = 50/202 (24%), Positives = 95/202 (47%), Gaps = 40/202 (19%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
++++N+S F ++ ++ +++ +I + LG NGAGK+T + +++G++ G K
Sbjct: 5 VSLENVSVSFGQRRV-LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK- 62
Query: 61 YNHDIRTDMTTIRRSLGVCPQYNALFDK---LTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
N +R +G PQ L D LTV + +L+ K
Sbjct: 63 RNGKLR---------IGYVPQKLYL-DTTLPLTVNRFL----RLRPGTKK---------- 98
Query: 118 VDLGIPHKRTSLAN-------TLSGG-MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRR 169
D+ KR + LSGG QR L +A A + + ++LDEPT GVD +
Sbjct: 99 EDILPALKRVQAGHLIDAPMQKLSGGETQRVL-LARALLNRPQLLVLDEPTQGVDVNGQV 157
Query: 170 SIWELL--IKYKKGRTVILTTH 189
++++L+ ++ + V++ +H
Sbjct: 158 ALYDLIDQLRRELDCAVLMVSH 179
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 48.1 bits (115), Expect = 9e-07
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILTTHY 190
LSGG ++++++A A I ++LDEP +D +R + +L+ + G TV+L TH
Sbjct: 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
Query: 191 MDEADLLGDRIAIIAAGKL 209
+ EA + DR+ +I GK+
Sbjct: 194 VSEAVAMADRVLLIEEGKI 212
Score = 28.9 bits (65), Expect = 2.1
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG 56
+ + +SKR+ + +N L+++ Q + +G +G GK+T + +L G+ S+G
Sbjct: 13 LLLNAVSKRY-GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG 67
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 48.2 bits (114), Expect = 9e-07
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 133 LSGGMQRKLSVAMAFI---GGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTT 188
+S G +R L++ +A + +++DEP +G+ P R + ELL + +KG +I TT
Sbjct: 190 ISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTT 249
Query: 189 H 189
H
Sbjct: 250 H 250
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 49.1 bits (117), Expect = 1e-06
Identities = 55/227 (24%), Positives = 98/227 (43%), Gaps = 55/227 (24%)
Query: 1 MAIQN--LSKRFPN-GKLAVNGLNVNFYED---------------QITSFLGHNGAGKTT 42
+ I+N K +P+ G++ V GL + E Q LG G+GK+T
Sbjct: 1201 LVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKST 1260
Query: 43 TISMLMGMLPVSSGTAKIYNHDIRTDMTTI---RRSLGVCPQ----YNALFDK------- 88
+S L+ +L S +I + + T+ R++ GV PQ ++ F K
Sbjct: 1261 LLSALLRLL---STEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQ 1317
Query: 89 ------LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLS 142
V E + S ++Q P L ++VD G LS G ++ +
Sbjct: 1318 WSDEEIWKVAEEVGLKSVIEQFPDKL-----DFVLVDGGY---------VLSNGHKQLMC 1363
Query: 143 VAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH 189
+A + + ++ ++LDEP++ +DP + + I + L + TVIL+ H
Sbjct: 1364 LARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEH 1410
Score = 47.2 bits (112), Expect = 4e-06
Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 41/204 (20%)
Query: 21 NVNFY--EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGV 78
N++F + Q+ + G G+GK++ + M+MG L S G K H R +
Sbjct: 444 NISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIK---HSGR---------ISF 491
Query: 79 CPQY----------NALFDKLTVEEHMWFYSQLK--QVPKDLAQLEISNMIV--DLGIPH 124
PQ N +F L+ +E+ + S +K Q+ +D+A + V + GI
Sbjct: 492 SPQTSWIMPGTIKDNIIFG-LSYDEYR-YTSVIKACQLEEDIALFPEKDKTVLGEGGI-- 547
Query: 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYKKGRT 183
TLSGG + ++S+A A + +LD P + +D + + I+E L K +T
Sbjct: 548 -------TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKT 600
Query: 184 VILTTHYMDEADLLGDRIAIIAAG 207
IL T ++ D+I ++ G
Sbjct: 601 RILVTSKLEHLK-KADKILLLHEG 623
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 49.0 bits (117), Expect = 1e-06
Identities = 58/239 (24%), Positives = 95/239 (39%), Gaps = 60/239 (25%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++++S P GKL V LG G+GK+T + L+ +S G
Sbjct: 676 LRDVSVSVPRGKLTV--------------VLGATGSGKSTLLQSLLSQFEISEGR----- 716
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQ-----------LKQVPKDLAQL 111
RS+ PQ A TV ++ F+ + + Q+ DLAQL
Sbjct: 717 -------VWAERSIAYVPQ-QAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQL 768
Query: 112 ------EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
EI V+ LSGG + ++S+A A +LD+P S +D
Sbjct: 769 GGGLETEIGEKGVN-------------LSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815
Query: 166 Y-SRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSV-FLKNSF 222
+ R + E + G+T +L TH + D + + G+++ GSS F++ S
Sbjct: 816 HVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFMRTSL 873
Score = 32.4 bits (74), Expect = 0.27
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 29/174 (16%)
Query: 33 LGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALFDKLTV 91
+G G+GK+T + M M+ V G ++ +I + +RR + PQ LFD TV
Sbjct: 1342 VGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TV 1400
Query: 92 EEHMWFYSQLKQVPKDL-AQLEISNMIVDLGIPHKRTSLAN--------TLSGGM----- 137
+++ + L+ ++ A LE+ + R +A+ L GG
Sbjct: 1401 RQNVDPF--LEASSAEVWAALELVGL---------RERVASESEGIDSRVLEGGSNYSVG 1449
Query: 138 QRKL-SVAMAFIG-GSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH 189
QR+L +A A + GS +++DE T+ +DP R I ++ TVI H
Sbjct: 1450 QRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAH 1503
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 47.6 bits (114), Expect = 1e-06
Identities = 47/206 (22%), Positives = 87/206 (42%), Gaps = 33/206 (16%)
Query: 29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT----DMTTIRRSLGVCPQYNA 84
I +G NGAGK+T ++ + G+LP SG+ + + ++ R L Q
Sbjct: 24 ILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL--SQQQTP 80
Query: 85 LFDKLTVEEHMWFYSQLKQ---VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKL 141
F ++ Y L Q + ++ + LG+ K N LSGG +++
Sbjct: 81 PFAM-----PVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRV 135
Query: 142 SVAMAFIGGSRTV-------ILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMDE 193
+A + + +LDEP + +D + ++ LL + ++G V++++H
Sbjct: 136 RLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSH---- 191
Query: 194 ADL-----LGDRIAIIAAGKLQCCGS 214
DL DR+ ++ GKL G
Sbjct: 192 -DLNHTLRHADRVWLLKQGKLLASGR 216
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 47.4 bits (113), Expect = 2e-06
Identities = 45/183 (24%), Positives = 73/183 (39%), Gaps = 21/183 (11%)
Query: 23 NFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQY 82
+ E ++ LG NG GKTT I ML G+L G DI ++ T+ PQY
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG-------DIEIELDTVSYK----PQY 69
Query: 83 NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLS 142
+ TV + S + + + + + L I LSGG ++++
Sbjct: 70 IKADYEGTVRD---LLSSITKDFYTHPYFK-TEIAKPLQIEQILDREVPELSGGELQRVA 125
Query: 143 VAMAFIGGSRTVILDEPTSGVDPYSR----RSIWELLIKYKKGRTVILTTHYMDEADLLG 198
+A + +LDEP++ +D R + I +K V+ M D L
Sbjct: 126 IAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM--IDYLA 183
Query: 199 DRI 201
DR+
Sbjct: 184 DRL 186
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 47.8 bits (114), Expect = 3e-06
Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 41/239 (17%)
Query: 1 MAIQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
+AI+NLS F + VN +++ + + +G +G+GK+ T ++ +LP
Sbjct: 6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSP--- 62
Query: 58 AKIYNH-DIR--------TDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDL 108
+Y DIR T+R G + +F +E M + L + K L
Sbjct: 63 PVVYPSGDIRFHGESLLHASEQTLRGVRG--NKIAMIF-----QEPMVSLNPLHTLEKQL 115
Query: 109 AQL--------------EISNMIVDLGIPHKRTSLAN---TLSGGMQRKLSVAMAFIGGS 151
++ EI N + +GI L + LSGG ++++ +AMA +
Sbjct: 116 YEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRP 175
Query: 152 RTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
+I DEPT+ +D + I +LL ++ + ++ TH + L DR+A++ G+
Sbjct: 176 ELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGR 234
Score = 45.1 bits (107), Expect = 2e-05
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 12/182 (6%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
+ + KR + + V ++ + +G +G+GK+TT L+ ++ S G
Sbjct: 289 KGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQ 347
Query: 64 DI----RTDMTTIRRSLGVCPQ--YNALFDKLTVEEHMWFYSQLKQVPKDLAQLE---IS 114
+ R + +R + V Q ++L +L V + + ++ Q AQ E I+
Sbjct: 348 PLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIA 407
Query: 115 NMIVDLGI-PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
M ++G+ P R SGG ++++++A A I +ILDEPTS +D + I
Sbjct: 408 VM-EEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILA 466
Query: 174 LL 175
LL
Sbjct: 467 LL 468
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 47.7 bits (114), Expect = 3e-06
Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 29/202 (14%)
Query: 6 LSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI 65
L K + + KL V Y+ ++ LG NG GKTT + +L G++ G+ + D+
Sbjct: 348 LKKTYGDFKLEVEE--GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE----DL 401
Query: 66 RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMIVDLGIPH 124
+ PQY + TVE S ++ + EI L +
Sbjct: 402 KVSYK---------PQYISPDYDGTVE--DLLRSAIRSAFGSSYFKTEIVK---PLNLED 447
Query: 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK---YKKG 181
+ LSGG +++++A A + +LDEP++ +D +R I +I+
Sbjct: 448 LLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLD-VEQRIIVAKVIRRFIENNE 506
Query: 182 RTVILTTH--YMDEADLLGDRI 201
+T ++ H YM D + DR+
Sbjct: 507 KTALVVDHDIYM--IDYVSDRL 526
Score = 45.8 bits (109), Expect = 1e-05
Identities = 52/211 (24%), Positives = 80/211 (37%), Gaps = 59/211 (27%)
Query: 28 QITSFLGHNGAGKTTTISMLMGML---------PVS--------SGT------AKIYNHD 64
++ LG NG GK+T + +L G L P S GT K+Y +
Sbjct: 101 KVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGE 160
Query: 65 IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH 124
+R PQY L K +K +L + D +
Sbjct: 161 LRAVHK---------PQYVDLIPK-----------VVKGKVGELLKKVDERGKFDEVV-- 198
Query: 125 KRTSLANT-------LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR----RSIWE 173
+R L N LSGG +++++A A + + DEP+S +D R R I E
Sbjct: 199 ERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRE 258
Query: 174 LLIKYKKGRTVILTTHYMDEADLLGDRIAII 204
L + G+ VI+ H + D L D + I+
Sbjct: 259 LA---EDGKYVIVVEHDLAVLDYLSDFVHIL 286
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 47.5 bits (113), Expect = 3e-06
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 18/135 (13%)
Query: 86 FDKLTVEEHMWFYSQLKQVPKDLAQLEISN-------MIVDLGIPHKRTSLA-NTLSGGM 137
F +++++E F SQL K L+ E+ +++DLG+P+ A TLSGG
Sbjct: 424 FQQMSLQELFIFLSQLP--SKSLSIEEVLQGLKSRLSILIDLGLPYLTPERALATLSGGE 481
Query: 138 QRKLSVAMAFIGGSR---TVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDE 193
Q + ++A +G T ILDEP+ G+ P + ++ K + +G TV+L H DE
Sbjct: 482 QERTALA-KHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEH--DE 538
Query: 194 ADL-LGDRIAIIAAG 207
+ L DRI I G
Sbjct: 539 QMISLADRIIDIGPG 553
Score = 31.0 bits (70), Expect = 0.77
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 132 TLSGGMQRKLSVAMAFIGGSRT---VILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILT 187
+LSGG ++L +A + S+ +LDEPT+G+ + +++ +L +G TV++
Sbjct: 809 SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVII 868
Query: 188 THYM 191
H M
Sbjct: 869 EHNM 872
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 47.1 bits (113), Expect = 4e-06
Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 45/211 (21%)
Query: 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
+L+K+ + L V G + YE ++ +G NG GKTT +L G+L G
Sbjct: 345 DLTKKLGDFSLEVEGGEI--YEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV------ 396
Query: 65 IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLA----QLEISNMIVDL 120
++ S PQY + + L+ + DL + EI L
Sbjct: 397 ----DPELKIS--YKPQY------IKPDYDGTVEDLLRSITDDLGSSYYKSEIIK---PL 441
Query: 121 GIPHKRTSLANTLSGG-MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR-------RSIW 172
+ LSGG +QR +++A + +LDEP++ +D R R I
Sbjct: 442 QLERLLDKNVKDLSGGELQR-VAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIA 500
Query: 173 ELLIKYKKGRTVILTTH--YMDEADLLGDRI 201
E ++ T ++ H YM D + DR+
Sbjct: 501 E-----EREATALVVDHDIYM--IDYISDRL 524
Score = 45.2 bits (108), Expect = 2e-05
Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 60/213 (28%)
Query: 26 EDQITSFLGHNGAGKTTTISMLMGML---------PVS--------SGTA------KIYN 62
E ++T LG NG GKTT + +L G L S GT K+YN
Sbjct: 98 EGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYN 157
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKL---TVEEHMWFYSQLKQVPK-----DLA-QLEI 113
+I+ + + PQY L K+ V E LK+V + ++ +L +
Sbjct: 158 GEIKV----VHK-----PQYVDLIPKVFKGKVRE------LLKKVDERGKLDEVVERLGL 202
Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
N I+D I + LSGG +++++A A + + DEPTS +D R ++
Sbjct: 203 EN-ILDRDI--------SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVAR 253
Query: 174 LLIKYKKGRTVILTTHYMDEA--DLLGDRIAII 204
L+ + +G+ V++ H D A D L D + I
Sbjct: 254 LIRELAEGKYVLVVEH--DLAVLDYLADNVHIA 284
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 47.1 bits (112), Expect = 5e-06
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 39/185 (21%)
Query: 29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD-----MTTIRRSLGVCPQYN 83
+T+ +G +GAGKTT + +L G T DIR T R G C Q +
Sbjct: 908 LTALMGVSGAGKTTLMDVLAG-----RKTGGYIEGDIRISGFPKKQETFARISGYCEQND 962
Query: 84 ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD---------------LGIPHKRTS 128
++TV E + YS ++PK++++ E M VD +G+P
Sbjct: 963 IHSPQVTVRESL-IYSAFLRLPKEVSKEE-KMMFVDEVMELVELDNLKDAIVGLPG---- 1016
Query: 129 LANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS----RRSIWELLIKYKKGRTV 184
LS +++L++A+ + + +DEPTSG+D + R++ + GRTV
Sbjct: 1017 -VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV---DTGRTV 1072
Query: 185 ILTTH 189
+ T H
Sbjct: 1073 VCTIH 1077
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 45.6 bits (108), Expect = 7e-06
Identities = 56/236 (23%), Positives = 104/236 (44%), Gaps = 49/236 (20%)
Query: 1 MAIQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
M +++L+ ++ G AV ++ + Q LG G+GK+T +S + +L
Sbjct: 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEG---- 58
Query: 60 IYNHDIRTD--------MTTIRRSLGVCPQYNALF-----------------DKLTVEEH 94
DI+ D + R++ GV PQ +F + V E
Sbjct: 59 ----DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEE 114
Query: 95 MWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV 154
+ S ++Q P QL+ ++VD G LS G ++ + +A + + ++ +
Sbjct: 115 VGLKSVIEQFP---GQLDF--VLVDGGC---------VLSHGHKQLMCLARSVLSKAKIL 160
Query: 155 ILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
+LDEP++ +DP + + I + L + TVIL+ H + EA L R +I K++
Sbjct: 161 LLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRI-EAMLECQRFLVIEENKVR 215
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 45.6 bits (108), Expect = 7e-06
Identities = 47/201 (23%), Positives = 91/201 (45%), Gaps = 35/201 (17%)
Query: 20 LNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC 79
+N+ + ++ + G G+GKT+ + +++G L S G K H R +
Sbjct: 56 INLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIK---HSGR---------ISFS 103
Query: 80 PQYNALFDKLTVEEHMWF---YSQLK--------QVPKDLAQL-EISNMIVDLGIPHKRT 127
Q++ + T++E++ F Y + + Q+ +D+ + E N ++ G
Sbjct: 104 SQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG------ 156
Query: 128 SLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE-LLIKYKKGRTVIL 186
TLSGG + ++S+A A + +LD P +D ++ + I+E + K +T IL
Sbjct: 157 --GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRIL 214
Query: 187 TTHYMDEADLLGDRIAIIAAG 207
T M+ D+I I+ G
Sbjct: 215 VTSKMEHLK-KADKILILHEG 234
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 46.2 bits (110), Expect = 8e-06
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 25/188 (13%)
Query: 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR-TDMTTIRRS 75
+NG++ + + +G +GAGK+T + +L V+SG+ I DIR ++RR+
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338
Query: 76 LGVCPQYNALFD------------KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL--G 121
+G+ PQ LF+ T EE + AQ I + I L G
Sbjct: 339 IGIVPQDTVLFNDTIAYNIKYGRPDATAEE--------VGAAAEAAQ--IHDFIQSLPEG 388
Query: 122 IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKG 181
LSGG ++++++A + +ILDE TS +D ++ ++I L + G
Sbjct: 389 YDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAG 448
Query: 182 RTVILTTH 189
RT ++ H
Sbjct: 449 RTTLVIAH 456
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 46.0 bits (110), Expect = 9e-06
Identities = 56/198 (28%), Positives = 85/198 (42%), Gaps = 37/198 (18%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK-IY 61
++NL+K F NG L LN+ + + +G NG GKTT + L+G L SGT K
Sbjct: 322 VENLTKGFDNGPL-FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE 380
Query: 62 NHDIRTDMTTIRRSLGVCPQ-YNALFDK-LTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
N +I G Q + F+ LT+ + M SQ +Q D Q +
Sbjct: 381 NANI-----------GYYAQDHAYDFENDLTLFDWM---SQWRQ-EGDDEQA-VRGT--- 421
Query: 120 LG--------IPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
LG I LSGG + ++ + +++DEPT+ +D S S+
Sbjct: 422 LGRLLFSQDDIKKS----VKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESL 477
Query: 172 WELLIKYKKGRTVILTTH 189
L KY+ T+I +H
Sbjct: 478 NMALEKYEG--TLIFVSH 493
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 45.5 bits (108), Expect = 1e-05
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 120 LGIPHKRTSL---ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
+GIP + L + LSGGM +++ +AMA + +I DEPT+ +D + I ELL+
Sbjct: 138 VGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLL 197
Query: 177 --KYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+ K+ ++L TH + +I ++ AG++
Sbjct: 198 ELQQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 45.0 bits (106), Expect = 1e-05
Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 24/198 (12%)
Query: 17 VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI---- 72
++ +N+ Q+T +G G GK++ + ++G + G K++ + +
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEG--KVHWSNKNESEPSFEATR 74
Query: 73 ---RRSLGVCPQYNALFDKLTVEEHMWFYSQL-KQVPKDLAQLEISNMIVDLGI-PH-KR 126
R S+ Q L + TVEE++ F S KQ K A + ++ D+ + P +
Sbjct: 75 SRNRYSVAYAAQKPWLLNA-TVEENITFGSPFNKQRYK--AVTDACSLQPDIDLLPFGDQ 131
Query: 127 TSLAN---TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY-SRRSIWELLIKYKKG- 181
T + LSGG ++++ VA A + V LD+P S +D + S + E ++K+ +
Sbjct: 132 TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDD 191
Query: 182 -RTVILTTH---YMDEAD 195
RT++L TH Y+ AD
Sbjct: 192 KRTLVLVTHKLQYLPHAD 209
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 44.5 bits (106), Expect = 1e-05
Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 37/185 (20%)
Query: 25 YEDQITSFLGHNGAGKTTTI-SMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYN 83
+ +T +G NGAGKTT I ++ + +K HD +
Sbjct: 20 FFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHD--PKLIREGEVRAQ----- 72
Query: 84 ALFDKLTVEEHMWFYSQLK-QVPKDLAQLEISNMI----VDLGIPHKRTSLANTLSGGMQ 138
V+ + K + + LA LE + + R SGG +
Sbjct: 73 -------VKLAFENANGKKYTITRSLAILENVIFCHQGESNWPLLDMRG----RCSGG-E 120
Query: 139 R-------KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY---KKGRTVILTT 188
+ +L++A F + LDEPT+ +D + +I+ +K +I+ T
Sbjct: 121 KVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVIT 180
Query: 189 HYMDE 193
H DE
Sbjct: 181 H--DE 183
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 43.3 bits (103), Expect = 2e-05
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 132 TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH 189
LSGG Q++L+ A + + V LDE TS +D S +++LL + G TVI H
Sbjct: 91 VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL--KELGITVISVGH 146
Score = 31.0 bits (71), Expect = 0.32
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQ---ITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
+ ++NLS P+G++ + L+ IT G +G GK++ L G+ P SG
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLIT---GPSGTGKSSLFRALAGLWPWGSGR 57
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 44.6 bits (106), Expect = 3e-05
Identities = 58/235 (24%), Positives = 109/235 (46%), Gaps = 42/235 (17%)
Query: 2 AIQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ ++ R+ P+G L ++ +++ + + +G +G+GK+T + +L+G SG+
Sbjct: 453 EVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY 512
Query: 61 YNHDIRT-DMTTIRRSLGVCPQYNALFD-----------KLTVEEHMWFYSQLKQVPKDL 108
D+ D+ +RR LGV Q L LT++E W +++ + +D
Sbjct: 513 DGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDE-AWEAARMAGLAED- 570
Query: 109 AQLEISNM------IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSG 162
I M ++ G TLSGG +++L +A A + R ++ DE TS
Sbjct: 571 ----IRAMPMGMHTVISEG--------GGTLSGGQRQRLLIARALVRKPRILLFDEATSA 618
Query: 163 VDPYSRRSIWELLIKYKKGRTVI---LTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
+D ++ + E L + K R VI L+T + DRI ++ AG++ G+
Sbjct: 619 LDNRTQAIVSESLERLKVTRIVIAHRLST-IRN-----ADRIYVLDAGRVVQQGT 667
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 44.3 bits (105), Expect = 3e-05
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 37/199 (18%)
Query: 12 NGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN---HDIRTD 68
A+ +N Q+ G G+GK+T +S++ VS G + ++ ++ D
Sbjct: 326 TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLD 385
Query: 69 MTTIRRSLGVCPQYNALFDKLTV------------EEHMWFYSQLKQVPKDLAQL----- 111
+ R L V Q LF TV ++ + ++L V D+ +L
Sbjct: 386 --SWRSRLAVVSQTPFLFSD-TVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYD 442
Query: 112 -EISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
E+ V LSGG ++++S+A A + + +ILD+ S VD +
Sbjct: 443 TEVGERGV-------------MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQ 489
Query: 171 IWELLIKYKKGRTVILTTH 189
I L ++ +GRTVI++ H
Sbjct: 490 ILHNLRQWGEGRTVIISAH 508
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 43.8 bits (104), Expect = 4e-05
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+NLSK F KL ++ L+ I +G NGAGK+T M+ G SGT KI
Sbjct: 325 AENLSKGF-GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI 381
Score = 33.7 bits (78), Expect = 0.087
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ +SK P K + ++++F+ LG NGAGK+T + ++ G+ +G A+
Sbjct: 7 MNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEAR 63
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 44.0 bits (104), Expect = 5e-05
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 132 TLSGGMQRK------LSVAMAFIGGSR--TVILDEPTSGVDPYSRRSIWELLIKYK-KGR 182
TLSGG + L+++ G +R + LDEP +D + E+L + GR
Sbjct: 815 TLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGR 874
Query: 183 TVILTTH 189
+I+ +H
Sbjct: 875 QIIIISH 881
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 43.3 bits (102), Expect = 5e-05
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 128 SLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVI 185
S L+ G +K+ +A+A R +I DEPT+ ++P ++ I+ LL + + T++
Sbjct: 154 SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTIL 213
Query: 186 LTTHYMDEADLLGDRIAIIAAGK 208
L +H + D+I ++ G+
Sbjct: 214 LISHDLQMISQWADKINVLYCGQ 236
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 42.3 bits (100), Expect = 9e-05
Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 22/148 (14%)
Query: 33 LGHNGAGKTTTISMLMGMLPVSSGTAKIYNH--DIRT-----DMTTIRRSLG-VCPQYNA 84
LG +GAGK++ + +L + SGT I + D + +RR++G V QYN
Sbjct: 34 LGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN- 92
Query: 85 LFDKLTVEEHMWFYSQLKQVP-------KDLAQLEISNMIVDLGIPHKRTSLANTLSGGM 137
L+ LTV+++ L + P KD A ++ L + LSGG
Sbjct: 93 LWPHLTVQQN------LIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQ 146
Query: 138 QRKLSVAMAFIGGSRTVILDEPTSGVDP 165
Q+++++A A + + ++ DEPT+ +DP
Sbjct: 147 QQRVAIARALMMEPQVLLFDEPTAALDP 174
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 42.4 bits (100), Expect = 1e-04
Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 29/168 (17%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIR----TDMTT 71
AV+G+ + YE + +G +G GK+T ++G++ + G D+ +
Sbjct: 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRA 95
Query: 72 IRRSLGVCPQ--YNALFDKLTV-----EEHMWFYSQLKQVPKDLAQLEISNMIVDLGI-- 122
+R + + Q +L ++T+ E ++ +L + + + M++ +G+
Sbjct: 96 VRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKL---SRQEVKDRVKAMMLKVGLLP 152
Query: 123 ------PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
PH+ SGG +++ +A A I + +I DEP S +D
Sbjct: 153 NLINRYPHE-------FSGGQCQRIGIARALILEPKLIICDEPVSALD 193
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 42.1 bits (99), Expect = 1e-04
Identities = 52/238 (21%), Positives = 103/238 (43%), Gaps = 31/238 (13%)
Query: 1 MAIQNLSKRF--------PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP 52
+ ++NLSK F AV ++ E Q + +G NG+GK+T ML GM+
Sbjct: 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 53 VSSGTAKIYNH-----DIRTDMTTIRR-----SLGVCPQYNA---LFDKLTVEEHMWFYS 99
+SG I +H D IR + + P+ L L + +
Sbjct: 65 PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQ 124
Query: 100 QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159
+ KQ+ + L + + +P + L+ G ++++++A A I + +I DE
Sbjct: 125 RRKQIFETLRMVGL--------LPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEA 176
Query: 160 TSGVDPYSRRSIWELL--IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSS 215
+ +D R + L+ ++ K+G + I T ++ + D++ ++ G++ GS+
Sbjct: 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 40.3 bits (95), Expect = 3e-04
Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 26/135 (19%)
Query: 33 LGHNGAGKTTTISMLMGMLPVS---SGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKL 89
LG G+G +T + L + G + + + + F L
Sbjct: 39 LGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98
Query: 90 TVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIG 149
TV E + F + K N V GI SGG ++++S+A A +
Sbjct: 99 TVRETLDFALRCK-----------GNEFVR-GI-----------SGGERKRVSIAEALVS 135
Query: 150 GSRTVILDEPTSGVD 164
+ + D T G+D
Sbjct: 136 RASVLCWDNSTRGLD 150
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 41.0 bits (96), Expect = 4e-04
Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 32/189 (16%)
Query: 34 GHNGAGKTTTISMLMG--------MLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNAL 85
G +GAGKTT + M++G SG ++ + + S + +Y
Sbjct: 416 GQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV---------SALIPGEYEPE 466
Query: 86 FDKLTVEEHMWFYSQLKQVPKDL-AQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVA 144
F ++T+ EH+ DL A +EI N L + LS G + + +A
Sbjct: 467 FGEVTILEHLR------SKTGDLNAAVEILNR-AGLSDAVLYRRKFSELSTGQKERAKLA 519
Query: 145 MAFIGGSRTVILDEPTSGVDPYS----RRSIWELLIKYKKGRTVILTTHYMDEADLLG-D 199
+++DE + +D + R I EL + G T+I+ TH + + L D
Sbjct: 520 KLLAERPNVLLIDEFAAHLDELTAVRVARKISEL--AREAGITLIVVTHRPEVGNALRPD 577
Query: 200 RIAIIAAGK 208
+ ++ GK
Sbjct: 578 TLILVGYGK 586
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 41.0 bits (97), Expect = 4e-04
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 23/115 (20%)
Query: 89 LTVEEHMWFYSQLKQVPKDLAQLEISNMIVD-------LGIPHKRTSLANTLSGG-MQR- 139
+TVEE + F+ + +PK +L+ +VD LG P A TLSGG QR
Sbjct: 784 MTVEEALEFF---EAIPKIARKLQT---LVDVGLGYIKLGQP------ATTLSGGEAQRV 831
Query: 140 KLSVAMAFIGGSRTV-ILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMD 192
KL+ ++ +T+ ILDEPT+G+ + + E+L + KG TVI+ H +D
Sbjct: 832 KLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD 886
Score = 36.4 bits (85), Expect = 0.012
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 130 ANTLSGG-MQRKLSVAMAFIGGSRTV----ILDEPTSGVDPYSRRSIWELLIKYK-KGRT 183
A TLSGG QR + +A GS +LDEP+ G+ + E L + + G T
Sbjct: 479 AGTLSGGEAQR---IRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNT 535
Query: 184 VILTTHYMDE 193
VI+ H DE
Sbjct: 536 VIVVEH--DE 543
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 39.3 bits (91), Expect = 5e-04
Identities = 38/190 (20%), Positives = 60/190 (31%), Gaps = 56/190 (29%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
++ +G G+GKTT L L G I D I +
Sbjct: 3 EVILIVGPPGSGKTTLARALARELGPPGGGV------IYIDGEDILEEVL---------- 46
Query: 88 KLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF 147
D + + SG ++ +L++A+A
Sbjct: 47 -------------------------------DQLLLIIVGGKKASGSGELRLRLALALAR 75
Query: 148 IGGSRTVILDEPTSGVDPYSRRSIWELL-------IKYKKGRTVILTTHYMDEADLLGDR 200
+ILDE TS +D + L +K +K TVILTT+ DE DL
Sbjct: 76 KLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN--DEKDLGPAL 133
Query: 201 IAIIAAGKLQ 210
+ ++
Sbjct: 134 LRRRFDRRIV 143
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 40.3 bits (95), Expect = 6e-04
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 40/162 (24%)
Query: 34 GHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRR-----------------SL 76
G NGAGK+T + +L G + + G IY D+ + R +
Sbjct: 36 GRNGAGKSTLMKILNGEVLLDDGRI-IYEQDL-----IVARLQQDPPRNVEGTVYDFVAE 89
Query: 77 GVCPQ------YNALFDKLTVEEHMWFYSQLKQVPKDLA-----QLE--ISNMIVDLGI- 122
G+ Q Y+ + + + ++L ++ + L QLE I+ ++ LG+
Sbjct: 90 GIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
P S +LSGG RK ++ A + ++LDEPT+ +D
Sbjct: 150 PDAALS---SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
Score = 36.9 bits (86), Expect = 0.009
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 41/177 (23%)
Query: 27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC--PQYNA 84
D+I + +G NG GKTT + +++G L SG L V Q+ A
Sbjct: 346 DKI-ALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTK------------LEVAYFDQHRA 392
Query: 85 LFD-KLTVEEHMWFYSQLKQ------VPKD-LAQLEISNMIVDLGIPHKRTSLANT---- 132
D + TV +++ ++ KQ P+ L L+ D KR A T
Sbjct: 393 ELDPEKTVMDNL---AEGKQEVMVNGRPRHVLGYLQ------DFLFHPKR---AMTPVKA 440
Query: 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH 189
LSGG + +L +A F+ S +ILDEPT+ +D + + ELL Y+ TV+L +H
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQG--TVLLVSH 495
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 39.5 bits (93), Expect = 8e-04
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 120 LGIPHKRTSLANTLSGG-MQR-KLSVAMAFIGGSRTV-ILDEPTSGVDPYSRRSIWELLI 176
LG P A TLSGG QR KL+ ++ +T+ ILDEPT+G+ + + + E+L
Sbjct: 163 LGQP------ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQ 216
Query: 177 KY-KKGRTVILTTHYMD 192
+ KG TV++ H +D
Sbjct: 217 RLVDKGNTVVVIEHNLD 233
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 39.3 bits (92), Expect = 8e-04
Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 43/203 (21%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRR------------- 74
Q+ +G NG GK+T + +L G L + G D D I
Sbjct: 27 QVLGLVGPNGIGKSTALKILAGKLKPNLG-----KFDDPPDWDEILDEFRGSELQNYFTK 81
Query: 75 ------SLGVCPQYNALFDKL---TVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHK 125
+ V PQY L K V E + + ++ + + QLE+ + ++D I
Sbjct: 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRH-VLDRNIDQ- 139
Query: 126 RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR----RSIWELLIKYKKG 181
LSGG +++++A A + DEP+S +D R R I EL +
Sbjct: 140 -------LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELA---EDD 189
Query: 182 RTVILTTHYMDEADLLGDRIAII 204
V++ H + D L D I +
Sbjct: 190 NYVLVVEHDLAVLDYLSDYIHCL 212
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 39.2 bits (92), Expect = 9e-04
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 115 NMIVDLGIPHKRTS-LANTLSGG-MQRKLSVAMAFIGGSRTV----ILDEPTSGVDPYSR 168
+VD+G+ + S A TLSGG QR + +A GS +LDEP+ G+ P
Sbjct: 119 GFLVDVGLGYLTLSRSAPTLSGGEAQR---IRLATQIGSGLTGVLYVLDEPSIGLHPRDN 175
Query: 169 RSIWELLIKYK-KGRTVILTTH 189
+ E L + + G TV++ H
Sbjct: 176 DRLIETLKRLRDLGNTVLVVEH 197
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 39.4 bits (92), Expect = 0.001
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GRTVILTTHY 190
L+ G +K+ +A+A R +I DEPT+ ++P ++ I+ LL + + T++L +H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218
Query: 191 MDEADLLGDRIAIIAAGK 208
+ D+I ++ G+
Sbjct: 219 LQMLSQWADKINVLYCGQ 236
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 39.3 bits (93), Expect = 0.001
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+NLSK F +L ++ L+ + I +G NGAGK+T M+ G SGT KI
Sbjct: 328 ENLSKSF-GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383
Score = 30.9 bits (71), Expect = 0.59
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTA 58
+SK P K + ++++F+ LG NGAGK+T + ++ G+ G A
Sbjct: 10 NRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA 64
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 39.0 bits (91), Expect = 0.001
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 3 IQNLSK--RFPNGKL------AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS 54
++NLSK R+ G AV L+ E Q + +G NG+GK+T ML GM+ +
Sbjct: 7 VRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT 66
Query: 55 SGTAKIYNH 63
SG I +H
Sbjct: 67 SGELLIDDH 75
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 38.6 bits (90), Expect = 0.001
Identities = 42/203 (20%), Positives = 92/203 (45%), Gaps = 27/203 (13%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRS 75
A++ +++ YE + +G NG+GK+T +++ G L + G +++ I S
Sbjct: 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-----EVSVIAIS 93
Query: 76 LGVCPQYNALFDKLTVEEHMWF------YSQLKQVPKDLAQL-EISNMIVDLGIPHKRTS 128
G+ Q LT E++ F + + K++ ++ E S + + P K+
Sbjct: 94 AGLSGQ-------LTGIENIEFKMLCMGFKR-KEIKAMTPKIIEFSELGEFIYQPVKK-- 143
Query: 129 LANTLSGGMQRKLSVAMAFIGGSRTVILDEPTS-GVDPYSRRSIWELLIKYKKGRTVILT 187
S GM+ KL ++ +++DE S G ++++ + ++ ++ +T+
Sbjct: 144 ----YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFV 199
Query: 188 THYMDEADLLGDRIAIIAAGKLQ 210
+H + + +IA I GKL+
Sbjct: 200 SHNLGQVRQFCTKIAWIEGGKLK 222
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 38.7 bits (91), Expect = 0.002
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 40/229 (17%)
Query: 1 MA---IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
MA +Q + K + + G++++ + + +G +G GK+T + M+ G+ ++SG
Sbjct: 1 MAGLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE 60
Query: 58 AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
I + ++ R + + Q AL+ ++V E+M + +++ +PK EI +
Sbjct: 61 IWIGGRVV-NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKA----EIEERV 115
Query: 118 VD----LGI-------PHKRTSLANTLSGGMQRKLSVAM--AFIGGSRTVILDEPTSGVD 164
+ L + P + LSGG QR+ VAM A + + DEP S +D
Sbjct: 116 AEAARILELEPLLDRKPRE-------LSGG-QRQ-RVAMGRAIVREPAVFLFDEPLSNLD 166
Query: 165 PYSR---RSIWELLIKYKKGR---TVILTTHYMDEADLLGDRIAIIAAG 207
R R L I+ R T + TH EA L DR+ ++ G
Sbjct: 167 AKLRVQMR----LEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGG 211
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 38.9 bits (90), Expect = 0.002
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 132 TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVILTTH 189
+LSGG ++++++A A + + ++LDE TS +D S + I + + IK K +T+I H
Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417
Score = 38.1 bits (88), Expect = 0.004
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 128 SLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKGRTVI 185
S A+ LSGG ++++S+A A I + +ILDE TS +D S + + + +K + R I
Sbjct: 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITI 634
Query: 186 LTTH 189
+ H
Sbjct: 635 IIAH 638
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 37.7 bits (88), Expect = 0.003
Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 24/243 (9%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG--MLPVSSGTAKI 60
I+NL N + GLN++ + +I + +G NG+GK+T ++ G + G
Sbjct: 10 IKNLHASV-NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILF 68
Query: 61 YNHDIRTDMTTIRRS-LGV--CPQY--------NALFDKLTVEEHMWFYSQLKQVPKDLA 109
I D+ R+ LG+ QY NA F +L F + P L
Sbjct: 69 KGESI-LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDP--LE 125
Query: 110 QLEISNMIVDLGIPHKRTSLANTL----SGGMQRKLSVAMAFIGGSRTVILDEPTSGVDP 165
LEI N + L + + L+ + SGG +++ + + S ILDE SG+D
Sbjct: 126 FLEIINEKLKL-VGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDI 184
Query: 166 YSRRSIWELLIKYK-KGRTVILTTHYMDEAD-LLGDRIAIIAAGKLQCCGSSVFLKNSFA 223
+ + I E + K ++IL THY D + D + ++ GK+ G + K
Sbjct: 185 DALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELAKELEK 244
Query: 224 RGY 226
+GY
Sbjct: 245 KGY 247
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 36.8 bits (85), Expect = 0.005
Identities = 40/185 (21%), Positives = 65/185 (35%), Gaps = 65/185 (35%)
Query: 24 FYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYN 83
E ++ +G NG GKTT + +L G L + + D T PQY
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD-------NDEWDGITP----VYKPQY- 69
Query: 84 ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSV 143
+DL SGG +++++
Sbjct: 70 ----------------------------------IDL-------------SGGELQRVAI 82
Query: 144 AMAFIGGSRTVILDEPTSGVDPYSR----RSIWELLIKYKKGRTVILTTHYMDEADLLGD 199
A A + + + DEP++ +D R R+I L + KK T ++ H + D L D
Sbjct: 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKK--TALVVEHDLAVLDYLSD 140
Query: 200 RIAII 204
RI +
Sbjct: 141 RIHVF 145
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 36.8 bits (85), Expect = 0.006
Identities = 45/201 (22%), Positives = 82/201 (40%), Gaps = 23/201 (11%)
Query: 3 IQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
I +L R+ N K + + Q G G+GK++ M+ + G I
Sbjct: 22 IHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVID 81
Query: 62 NHDI-RTDMTTIRRSLGVCPQYNALF----------DKLTVEEHMWFYSQLKQVPKDLAQ 110
DI + + T+R L + Q LF + ++ +W ++AQ
Sbjct: 82 GIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLW-------EALEIAQ 134
Query: 111 LEISNMIVDL--GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
L+ NM+ L G+ T S G ++ +A AF+ S +I+DE T+ +D +
Sbjct: 135 LK--NMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE 192
Query: 169 RSIWELLIKYKKGRTVILTTH 189
+ ++++ RTV+ H
Sbjct: 193 NILQKVVMTAFADRTVVTIAH 213
>gnl|CDD|233793 TIGR02237, recomb_radB, DNA repair and recombination protein RadB.
This family consists exclusively of archaeal RadB
protein, a homolog of bacterial RecA (TIGR02012),
eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and
archaeal RadA (TIGR02236).
Length = 209
Score = 36.2 bits (84), Expect = 0.007
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVC-PQYNALFD 87
IT G G+GK T I M++ + G +Y I T+ + R + +
Sbjct: 14 ITQIYGPPGSGK-TNICMILAVNAARQGKKVVY---IDTEGLSPERFKQIAEDRPERALS 69
Query: 88 KLTVEEHMWFYSQLKQVPK--DLAQLEISNMIV 118
V E F Q + K + ++++V
Sbjct: 70 NFIVFEVFDFDEQGVAIQKTSKFIDRDSASLVV 102
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 34.1 bits (79), Expect = 0.009
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 117 IVDLGIPHKRTS-LANTLSGGMQRKL---SVAMAF---IGGS------RTVILDEPTSGV 163
+ D + S + TLSGG ++ L ++A A G + R + LDE + +
Sbjct: 6 VRDEDGSERELSRDSGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKL 65
Query: 164 DPYSRRSIWELL 175
D + RS+ ELL
Sbjct: 66 DEENIRSLLELL 77
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 36.4 bits (85), Expect = 0.009
Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 25/193 (12%)
Query: 29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI-----YNHDIRTDMTTIRRSLGVCPQYN 83
IT+ G +GAGKT+ I+ + G+ G + ++ + + +R +G Q
Sbjct: 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDA 85
Query: 84 ALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD-LGIPHKRTSLANTLSGGMQRKLS 142
LF V ++ + +AQ + IV LGI +LSGG +++++
Sbjct: 86 RLFPHYKVRGNL----RYGMAKSMVAQF---DKIVALLGIEPLLDRYPGSLSGGEKQRVA 138
Query: 143 VAMAFIGGSRTVILDEPTSGVD-PYSRRSIWELLIKY-----KKGRTVIL-TTHYMDEAD 195
+ A + +++DEP + +D P R ELL Y ++ IL +H +DE
Sbjct: 139 IGRALLTAPELLLMDEPLASLDLPRKR----ELL-PYLERLAREINIPILYVSHSLDEIL 193
Query: 196 LLGDRIAIIAAGK 208
L DR+ ++ GK
Sbjct: 194 RLADRVVVLEQGK 206
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 36.7 bits (85), Expect = 0.010
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 14 KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIR 73
++ ++ + +N LG NGAGK+T I +L G L SG + I+
Sbjct: 325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL-AKGIK------- 376
Query: 74 RSLGVCPQYNALFDKLTVEE----HMWFYSQLKQVPKDLAQLEISNMIVDLGIP-HKRTS 128
LG Q+ F L +E H+ + P++L Q ++ + + G K T
Sbjct: 377 --LGYFAQHQLEF--LRADESPLQHL-----ARLAPQELEQ-KLRDYLGGFGFQGDKVTE 426
Query: 129 LANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVI 185
SGG + +L +A+ ++LDEPT+ +D R+++ E LI ++ V+
Sbjct: 427 ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVV 483
Score = 35.9 bits (83), Expect = 0.015
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 134 SGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW-ELLIKYKKGRTVILTTHYMD 192
SGG + +L++A A I S ++LDEPT+ +D + IW E +K +G T+IL +H D
Sbjct: 151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDA--VIWLEKWLKSYQG-TLILISHDRD 207
Query: 193 EADLLGDRI 201
D + D+I
Sbjct: 208 FLDPIVDKI 216
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 35.8 bits (83), Expect = 0.019
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 89 LTVEEHMWFYSQLKQVPKDLAQL-EISNMIVDLGIPHKRTSLANTLSGG-MQR-KLSVAM 145
+TVEE F+ + + + L L ++ + LG P A TLSGG QR KL+ +
Sbjct: 791 MTVEEAYEFFEAVPSISRKLQTLCDVGLGYIRLGQP------ATTLSGGEAQRIKLAKEL 844
Query: 146 AFIGGSRTV-ILDEPTSGVDPYSRRSIWELLIKY-KKGRTVILTTHYMD 192
+ RT+ ILDEPT+G+ + + E+L + KG TV++ H +D
Sbjct: 845 SKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLD 893
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 35.2 bits (81), Expect = 0.026
Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 98 YSQLKQVPKDLAQLEISNMIVDLGI-PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVIL 156
Y +L+ + A+ ++++ L P + T SGG + ++++A A ++L
Sbjct: 309 YKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLL 368
Query: 157 DEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH 189
DEPT+ +D ++ + L+K+ K T I+ +H
Sbjct: 369 DEPTNHLDLHAVLWLETYLLKWPK--TFIVVSH 399
Score = 32.5 bits (74), Expect = 0.21
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 10 FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
+P G L LN D + +G NG GK+T + ++ G L SSGT
Sbjct: 518 YPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGT 565
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 35.4 bits (82), Expect = 0.026
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIK-YKKGRTVILTTHYM 191
LS G RK + A + +ILDEP G+D SR+ + ELL ++ G T++L +
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF 195
Query: 192 DEADLLGDRIAIIA 205
DE ++A
Sbjct: 196 DEIPDFVQFAGVLA 209
Score = 33.4 bits (77), Expect = 0.10
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 120 LGIPHKRTSLAN----TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR---RSIW 172
LGI A+ +LS G QR + A + +ILDEP G+DP +R R
Sbjct: 388 LGID---KRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFV 444
Query: 173 ELLIKYKKGRTVIL-TTHYMDEA 194
++LI +G T +L +H+ ++A
Sbjct: 445 DVLI--SEGETQLLFVSHHAEDA 465
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 33.5 bits (77), Expect = 0.048
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 14/80 (17%)
Query: 130 ANTLSGGMQRKLSVAMAFIGGS--RTV-ILDEPTSGVDPYSRRSIWELLIKYKK----GR 182
+TLSGG +++ +A + + T+ ILDEP++G+ + I +LL K G
Sbjct: 85 LSTLSGGELQRVKLA-SELFSEPPGTLFILDEPSTGLHQ---QDINQLLEVIKGLIDLGN 140
Query: 183 TVILTTH---YMDEADLLGD 199
TVIL H + AD + D
Sbjct: 141 TVILIEHNLDVLSSADWIID 160
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 32.9 bits (75), Expect = 0.082
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 19 GLNVNFYEDQITSFLGHNGAGKTTTISMLMGML 51
L ++F +T G NG+GKTT + + L
Sbjct: 12 DLEIDF-SKGLTLIYGPNGSGKTTILDAIRWAL 43
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 33.9 bits (78), Expect = 0.084
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 133 LSGG------MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVI 185
LSGG + +L++++ G +ILDEPT +D RR + +++ +Y +K VI
Sbjct: 789 LSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVI 848
Query: 186 LTTHYMDE 193
+ +H DE
Sbjct: 849 IVSH--DE 854
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 32.7 bits (75), Expect = 0.15
Identities = 46/212 (21%), Positives = 87/212 (41%), Gaps = 28/212 (13%)
Query: 1 MAIQNLSKRFPNGKLA--------VNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP 52
+ + LS + +G L+ +N ++++ + + LG +G GK+T +L+G+
Sbjct: 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES 63
Query: 53 VSSGTAKIYNHDI----RTDMTTIRRSLGVCPQ--YNALFDKLTVEE-------HMWFYS 99
S G + R RR + + Q +A+ + TV E H+
Sbjct: 64 PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLD 123
Query: 100 QLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEP 159
+ +++ + L VDL LSGG +++ +A A + +ILDE
Sbjct: 124 KAERLARASEMLRA----VDLD-DSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEA 178
Query: 160 TSGVDPYSRRSIWELLIKYKK--GRTVILTTH 189
S +D + + LL K ++ G + TH
Sbjct: 179 VSNLDLVLQAGVIRLLKKLQQQFGTACLFITH 210
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 32.5 bits (74), Expect = 0.15
Identities = 51/220 (23%), Positives = 84/220 (38%), Gaps = 42/220 (19%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLP--VSSGTAKIYNHDI--------RTDMTTIRRSLG 77
++T+ LG NGAGK+T + L G L + A++ D+ D + R
Sbjct: 28 RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTG-DVTLNGEPLAAIDAPRLARLRA 86
Query: 78 VCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLAN------ 131
V PQ + E + L + P ++ D I + +LA
Sbjct: 87 VLPQAAQPAFAFSAREIV----LLGRYPHARRAGALT--HRDGEIAWQALALAGATALVG 140
Query: 132 ----TLSGGMQRKLSVAMAF---------IGGSRTVILDEPTSGVDPYSRRSIWE----L 174
TLSGG ++ A R ++LDEPT+ +D + + + L
Sbjct: 141 RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRL 200
Query: 175 LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
+ G V+ H + A DRIA++A G + G+
Sbjct: 201 ARDWNLG--VLAIVHDPNLAARHADRIAMLADGAIVAHGA 238
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 32.6 bits (75), Expect = 0.18
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 32 FLGHNGAGKTTTISMLMGML 51
F+G NG GKTTTI+ L L
Sbjct: 145 FVGVNGTGKTTTIAKLAYYL 164
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 32.2 bits (74), Expect = 0.23
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 133 LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH 189
LSGG +++L +A A + +ILDE TS +DP + + I + L ++G T I+ H
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL--RRRGCTCIIVAH 670
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 31.0 bits (71), Expect = 0.30
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 26 EDQITSFLGHNGAGKTTTISMLMG 49
+ + + G +G GK+T ++ L+
Sbjct: 34 KGKTSVLAGQSGVGKSTLLNALLP 57
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 31.5 bits (72), Expect = 0.39
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 29 ITSFLGHNGAGKTTTISML 47
+ F+G NG GKTTTI+ L
Sbjct: 141 VILFVGVNGVGKTTTIAKL 159
>gnl|CDD|225586 COG3044, COG3044, Predicted ATPase of the ABC class [General
function prediction only].
Length = 554
Score = 31.4 bits (71), Expect = 0.42
Identities = 43/200 (21%), Positives = 69/200 (34%), Gaps = 44/200 (22%)
Query: 11 PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH---DIRT 67
PNGK V G+ + IT G N GKTT ++ + + NH D R
Sbjct: 230 PNGK-EVVGMGI---PQGITLITGGNFHGKTTLLTAI---------ERGVDNHIPGDGRE 276
Query: 68 DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL-GIPHKR 126
+ T + K EE ++S I L G
Sbjct: 277 RVVTDVKLA-----------KAEAEEGRCVSGL-----------DLSLFINHLPGGKDTP 314
Query: 127 TSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVIL 186
+ SG + A G++T+++DE TS + R + + ++ T ++
Sbjct: 315 DFVTGDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATN-LLVRDVLAKESEGERTLTPLV 373
Query: 187 TTHYMDEADLLGDRIAIIAA 206
+ L GD I+ IA
Sbjct: 374 ----DEIGSLRGDLISTIAV 389
>gnl|CDD|236686 PRK10416, PRK10416, signal recognition particle-docking protein
FtsY; Provisional.
Length = 318
Score = 31.2 bits (72), Expect = 0.45
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 32 FLGHNGAGKTTTI 44
+G NG GKTTTI
Sbjct: 119 VVGVNGVGKTTTI 131
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 31.6 bits (72), Expect = 0.45
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFI------GGSRTVILDEPTSGVDPYSRRSIWELLI 176
P K+ + LSGG ++ L+ A+A + + +LDE + +D + + L+
Sbjct: 1057 PGKKLQSLSLLSGG-EKSLT-ALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIK 1114
Query: 177 KYKKGRTVILTTH---YMDEADLL 197
+ K I+ TH M+ AD L
Sbjct: 1115 EMSKETQFIVITHRKGTMEAADRL 1138
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 31.4 bits (71), Expect = 0.47
Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 15/180 (8%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRS 75
A+N ++ E +I +G NG+GK+T +++ G+ + GT DI+ I S
Sbjct: 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-----DIKGSAALIAIS 93
Query: 76 LGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG-IPHKRTSLANTLS 134
G L +LT E++ + + K+ + EI I++ I T S
Sbjct: 94 SG-------LNGQLTGIENIELKGLMMGLTKEKIK-EIIPEIIEFADIGKFIYQPVKTYS 145
Query: 135 GGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDE 193
GM+ +L A++ +++DE S D + + + ++K +G+T+ +H + +
Sbjct: 146 SGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ 205
>gnl|CDD|226650 COG4187, RocB, Arginine degradation protein (predicted deacylase)
[Amino acid transport and metabolism].
Length = 553
Score = 31.3 bits (71), Expect = 0.52
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 24/89 (26%)
Query: 164 DPYSRRSIWELLIKYKKGRTVILTTHY---------------MDEADLLGDRIAIIAAGK 208
DPY RR+++ L+ RTV+L H+ D LL I + +
Sbjct: 61 DPYGRRNVFALVRGGTSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELRE 120
Query: 209 ---LQCCGSSVFLKNSFARGYYLSLDMKS 234
L+ S +L F RG +LDMKS
Sbjct: 121 ERVLRDLESGDWL---FGRG---ALDMKS 143
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 30.9 bits (70), Expect = 0.65
Identities = 40/196 (20%), Positives = 81/196 (41%), Gaps = 37/196 (18%)
Query: 11 PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT------AKIYNHD 64
PNG + + L+ G NG GK++ +L + PV G K++
Sbjct: 462 PNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVP 521
Query: 65 IRTDMT--TIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
R MT T+R ++ ++ S + L+ ++ ++ ++ +
Sbjct: 522 QRPYMTLGTLR------------------DQIIYPDSSEDMKRRGLSDKDLEQILDNVQL 563
Query: 123 PH--KR----TSLAN---TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
H +R +++ + LSGG ++++++A F + ILDE TS V ++
Sbjct: 564 THILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYR 623
Query: 174 LLIKYKKGRTVILTTH 189
L ++ G T+ +H
Sbjct: 624 LCREF--GITLFSVSH 637
>gnl|CDD|238688 cd01394, radB, RadB. The archaeal protein radB shares similarity
radA, the archaeal functional homologue to the bacterial
RecA. The precise function of radB is unclear.
Length = 218
Score = 30.5 bits (69), Expect = 0.69
Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 11/113 (9%)
Query: 29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD---MTTIRRSLGVCPQYNAL 85
+T G G GK T I++ + + G Y I T+ R+ G P+
Sbjct: 21 VTQVYGPPGTGK-TNIAIQLAVETAGQGKKVAY---IDTEGLSSERFRQIAGDRPE--RA 74
Query: 86 FDKLTVEEHMWFYSQLKQVPK--DLAQLEISNMIVDLGIPHKRTSLANTLSGG 136
+ V E M F Q + + + A ++ ++VD R L + +
Sbjct: 75 ASSIIVFEPMDFNEQGRAIQETETFADEKVDLVVVDSATALYRLELGDDDTTI 127
>gnl|CDD|232804 TIGR00064, ftsY, signal recognition particle-docking protein
FtsY. There is a weak division between FtsY and SRP54;
both are GTPases. In E.coli, ftsY is an essential gene
located in an operon with cell division genes ftsE and
ftsX, but its apparent function is as the signal
recognition particle docking protein [Protein fate,
Protein and peptide secretion and trafficking].
Length = 272
Score = 30.3 bits (69), Expect = 0.79
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 32 FLGHNGAGKTTTISMLMGML 51
F+G NG GKTTTI+ L L
Sbjct: 77 FVGVNGVGKTTTIAKLANKL 96
>gnl|CDD|182746 PRK10805, PRK10805, formate transporter; Provisional.
Length = 285
Score = 30.2 bits (68), Expect = 0.93
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Query: 38 AGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWF 97
+G++ + +LPV+ A + H I +M I +G+ + A + E F
Sbjct: 184 SGRSLMDKAFIMVLPVAMFVASGFEHSI-ANMFMI--PMGIVIRDFA-----SPE----F 231
Query: 98 YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGM 137
++ + P+ + L + N I D IP ++ N + GG+
Sbjct: 232 WTAVGSAPEQFSHLTVMNFITDNLIP---VTIGNIIGGGL 268
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 29.7 bits (68), Expect = 1.1
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 26 EDQITSFLGHNGAGKTTTISMLMG 49
+ + + +G +G GK+T ++ L+
Sbjct: 84 KGKTSVLVGQSGVGKSTLLNALLP 107
>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2. MutS2
homologs in bacteria and eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired
and unpaired bases embedded in duplex DNA and activating
endo- and exonucleases to remove the mismatch. Members
of the MutS family also possess a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 200
Score = 29.5 bits (67), Expect = 1.2
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 154 VILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILTTHY 190
V+LDE SG DP ++ +++ ++G VI TTHY
Sbjct: 112 VLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY 150
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 29.8 bits (67), Expect = 1.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 133 LSGGMQRKLSVAMAFIGGSR--TVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH 189
LS G R L++A + ++LDEP + + P ++ EL+ K VI++TH
Sbjct: 271 LSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTH 329
>gnl|CDD|183704 PRK12726, PRK12726, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 407
Score = 29.7 bits (66), Expect = 1.3
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 10 FPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDM 69
+ +GKLAV + + +I S +G G GKTTT+ L L + T I TD
Sbjct: 190 YLSGKLAVED-SFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGF----ITTD- 243
Query: 70 TTIRRSLGVCPQYNALFDKLTVE 92
T R G Q+ DKL VE
Sbjct: 244 -TFRS--GAVEQFQGYADKLDVE 263
>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS
homologs. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family also possess a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 202
Score = 29.1 bits (66), Expect = 1.4
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 154 VILDEPTSGVDPYSRRSIWELLIKY--KKGRTVILTTHY 190
V++DE G +I ++++ +KG + TH+
Sbjct: 112 VLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHF 150
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 29.9 bits (68), Expect = 1.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 29 ITSFLGHNGAGKTTTISMLM 48
+T+ G NGAGK+TT++ +
Sbjct: 29 VTTLSGGNGAGKSTTMAAFV 48
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 29.7 bits (68), Expect = 1.7
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 130 ANTLSGG-MQR-KLSVAMAFIGGSRTV-ILDEPTSG 162
A TLSGG QR KL+ ++ +T+ ILDEPT+G
Sbjct: 828 ATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTG 863
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 29.4 bits (66), Expect = 1.7
Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 18/242 (7%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGM--LPVSSGTA 58
++I++L K + GLN+ ++ + +G NG+GK+T + L G V+ GT
Sbjct: 2 LSIKDLHVSV-EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60
Query: 59 KIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPK----------DL 108
+ D+ R G+ + + V + + L V D
Sbjct: 61 EFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120
Query: 109 AQLEISNMIVDLGIPHK--RTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
L + I L +P S+ SGG +++ + + ILDE SG+D
Sbjct: 121 QDL-MEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDID 179
Query: 167 SRRSIWELLIKYKKG-RTVILTTHYMDEADLLG-DRIAIIAAGKLQCCGSSVFLKNSFAR 224
+ + + + + + G R+ I+ THY D + D + ++ G++ G +K +
Sbjct: 180 ALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQ 239
Query: 225 GY 226
GY
Sbjct: 240 GY 241
>gnl|CDD|215925 pfam00448, SRP54, SRP54-type protein, GTPase domain. This family
includes relatives of the G-domain of the SRP54 family
of proteins.
Length = 196
Score = 29.1 bits (66), Expect = 1.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 32 FLGHNGAGKTTTISML 47
+G G+GKTTTI+ L
Sbjct: 6 LVGLQGSGKTTTIAKL 21
>gnl|CDD|193531 cd05654, M20_ArgE_RocB, M20 Peptidase Arginine utilization protein,
RocB. Peptidase M20 family, ArgE RocB (Arginine
utilization protein, RocB; arginine degradation protein,
RocB) subfamily. This group of proteins is possibly
related to acetylornithine deacetylase (ArgE) and may be
involved in the arginine and/or ornithine degradation
pathway. In Bacillus subtilis, RocB is one of the three
genes found in the rocABC operon, which is sigma L
dependent and induced by arginine. The function of
members of this family is as yet unknown, although they
are predicted as deacetylases.
Length = 535
Score = 29.5 bits (67), Expect = 1.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 164 DPYSRRSIWELLIKYKKGRTVILTTHY 190
DP R++++ L+ +TVIL H+
Sbjct: 54 DPLGRKNVFALVKGPTSKKTVILIGHF 80
>gnl|CDD|214940 smart00962, SRP54, SRP54-type protein, GTPase domain. This entry
represents the GTPase domain of the 54 kDa SRP54
component, a GTP-binding protein that interacts with
the signal sequence when it emerges from the ribosome.
SRP54 of the signal recognition particle has a
three-domain structure: an N-terminal helical bundle
domain, a GTPase domain, and the M-domain that binds
the 7s RNA and also binds the signal sequence. The
extreme C-terminal region is glycine-rich and lower in
complexity and poorly conserved between species. The
GTPase domain is evolutionary related to P-loop NTPase
domains found in a variety of other proteins.
Length = 197
Score = 28.5 bits (65), Expect = 2.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 32 FLGHNGAGKTTTI 44
+G NG GKTTTI
Sbjct: 6 LVGPNGVGKTTTI 18
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 28.8 bits (65), Expect = 2.5
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 26 EDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSL 76
+IT LG +G GK+T I+ L+ L T +I R TT L
Sbjct: 163 AGKITVLLGQSGVGKSTLINALLPELNQK--TGEISEKLGRGRHTTTHVEL 211
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 28.9 bits (65), Expect = 2.7
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 128 SLANTLSGG-MQR---KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRT 183
LA SGG + R L V ++ T+I DE GV + ++I + L + +
Sbjct: 436 PLAKVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQ 495
Query: 184 VILTTH 189
V+ TH
Sbjct: 496 VLCVTH 501
>gnl|CDD|226267 COG3744, COG3744, PIN domain nuclease, a component of
toxin-antitoxin system (PIN domain) [Signal transduction
mechanisms].
Length = 130
Score = 28.1 bits (63), Expect = 2.7
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 170 SIWELLIKYKKGR 182
S WE+ IK + G+
Sbjct: 42 SAWEIAIKVRIGK 54
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 28.8 bits (65), Expect = 2.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 134 SGGMQRKLSVAMAFIGGSRTVILDEPTSGVD 164
SGG ++++++A A + V+ DEP S +D
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
>gnl|CDD|236292 PRK08566, PRK08566, DNA-directed RNA polymerase subunit A';
Validated.
Length = 882
Score = 28.7 bits (65), Expect = 3.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 71 TIRRSLGVCPQYNALFD 87
T R +L VCP YNA FD
Sbjct: 443 TFRLNLAVCPPYNADFD 459
>gnl|CDD|233843 TIGR02390, RNA_pol_rpoA1, DNA-directed RNA polymerase subunit A'.
This family consists of the archaeal A' subunit of the
DNA-directed RNA polymerase. The example from
Methanocaldococcus jannaschii contains an intein.
Length = 867
Score = 28.9 bits (65), Expect = 3.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 71 TIRRSLGVCPQYNALFD 87
T R +L VCP YNA FD
Sbjct: 439 TFRLNLAVCPPYNADFD 455
>gnl|CDD|239420 cd03167, oculospanin_like_LEL, Tetraspanin, extracellular domain or
large extracellular loop (LEL), oculospanin_like family.
Tetraspanins are trans-membrane proteins with 4
trans-membrane segments. Both the N- and C-termini lie
on the intracellular side of the membrane. This
alignment model spans the extracellular domain between
the 3rd and 4th trans-membrane segment. Tetraspanins are
involved in diverse processes and their various
functions may relate to their ability to act as
molecular facilitators. Tetraspanins associate laterally
with one another and cluster dynamically with numerous
parnter domains in membrane microdomains, forming a
network of multimolecular complexes, the "tetraspanin
web". This subfamily contains sequences similar to
oculospanin, which is found to be expressed in retinal
pigment epithelium, iris, ciliary body, and retinal
ganglion cells.
Length = 120
Score = 27.4 bits (61), Expect = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 6/32 (18%)
Query: 188 THYMDEADL--LGDRIAIIAAGKLQCCGSSVF 217
HY D+ DL L D++ + LQCCG+S +
Sbjct: 20 AHYQDDPDLRFLIDQVQL----GLQCCGASSY 47
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 28.4 bits (64), Expect = 3.8
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 32 FLGHNGAGKTTTISMLMG---MLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
LG +G GK+T ++ L+G T + D + TT R L P L D
Sbjct: 200 LLGSSGVGKSTLVNALLGEEVQK-----TGAVREDDSKGRHTTTHRELHPLPSGGLLID 253
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 28.0 bits (63), Expect = 3.8
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 133 LSGGMQRKLSVAMAFI------GGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGRTVI 185
LSGG ++ LS A+A I S +LDE + +DP +RR + +++ + K I
Sbjct: 95 LSGG-EKSLS-ALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFI 152
Query: 186 LTTH 189
+ T
Sbjct: 153 VITL 156
>gnl|CDD|239389 cd03115, SRP, The signal recognition particle (SRP) mediates the
transport to or across the plasma membrane in bacteria
and the endoplasmic reticulum in eukaryotes. SRP
recognizes N-terminal sighnal sequences of newly
synthesized polypeptides at the ribosome. The
SRP-polypeptide complex is then targeted to the
membrane by an interaction between SRP and its cognated
receptor (SR). In mammals, SRP consists of six protein
subunits and a 7SL RNA. One of these subunits is a 54
kd protein (SRP54), which is a GTP-binding protein that
interacts with the signal sequence when it emerges from
the ribosome. SRP54 is a multidomain protein that
consists of an N-terminal domain, followed by a central
G (GTPase) domain and a C-terminal M domain.
Length = 173
Score = 27.5 bits (62), Expect = 4.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 32 FLGHNGAGKTTTISML 47
+G G GKTTT + L
Sbjct: 5 LVGLQGVGKTTTAAKL 20
>gnl|CDD|234608 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 28.2 bits (64), Expect = 4.5
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 1 MAIQNLS-KRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKT 41
M + LS F N + L++ + +G NG GKT
Sbjct: 1 MYLTRLSLTDFRNYE----ELDLEL-SPGVNVLVGENGQGKT 37
>gnl|CDD|131085 TIGR02030, BchI-ChlI, magnesium chelatase ATPase subunit I. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 337
Score = 27.9 bits (62), Expect = 5.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 33 LGHNGAGKTTTISMLMGMLP 52
+G G GK+T + L +LP
Sbjct: 31 MGDRGTGKSTAVRALAALLP 50
>gnl|CDD|226217 COG3693, XynA, Beta-1,4-xylanase [Carbohydrate transport and
metabolism].
Length = 345
Score = 27.4 bits (61), Expect = 7.2
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 22/108 (20%)
Query: 71 TIRRSLGVCPQYNALFDKLTVEEHM-WFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL 129
++RRS +D T +++ + ++ D A+L I++ ++ G P KR +
Sbjct: 157 SLRRSAW--------YDGGTGPDYIKLAFHIAREADPD-AKLVINDYSIE-GNPAKRNYV 206
Query: 130 ANTLSG-----------GMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
N + G+Q S I R +L G+ Y
Sbjct: 207 LNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKMRAALLKFSKLGLPIY 254
>gnl|CDD|236482 PRK09361, radB, DNA repair and recombination protein RadB;
Provisional.
Length = 225
Score = 27.1 bits (61), Expect = 7.7
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLGVCPQ-YNALFD 87
IT G G+GK T I + + + +G IY I T+ + R + + + L
Sbjct: 25 ITQIYGPPGSGK-TNICLQLAVEAAKNGKKVIY---IDTEGLSPERFKQIAGEDFEELLS 80
Query: 88 KLTVEEHMWFYSQLKQVPK--DLAQLEISNMIVD 119
+ + E F Q + + K LA+ + +++D
Sbjct: 81 NIIIFEPSSFEEQSEAIRKAEKLAKENVGLIVLD 114
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily.
Length = 320
Score = 27.4 bits (61), Expect = 7.8
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 25 YEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTD 68
+ I +G NG+GKTT + L I D + D
Sbjct: 20 LNEGINVIIGENGSGKTTILEAL--DNLKEKKKIYISISDNKAD 61
>gnl|CDD|237965 PRK15429, PRK15429, formate hydrogenlyase transcriptional activator
FhlA; Provisional.
Length = 686
Score = 27.5 bits (61), Expect = 8.0
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 170 SIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+I +L ++K + I +THY+D+ ++ + AG L
Sbjct: 219 AISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTL 258
>gnl|CDD|179571 PRK03369, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 488
Score = 27.4 bits (61), Expect = 8.7
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 39 GKTTTISMLMGML 51
GKTTT SML ML
Sbjct: 127 GKTTTTSMLHAML 139
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 27.1 bits (61), Expect = 9.1
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 26 EDQITSFLGHNGAGKTTTI 44
++T G +G GK+T +
Sbjct: 163 AGKVTVLAGQSGVGKSTLL 181
>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin. This family consists of
several bacterial zeta toxin proteins. Zeta toxin is
thought to be part of a postregulational killing system
in bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 26.8 bits (60), Expect = 9.3
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 37 GAGKTTTISMLMGMLPVSSGTAKIYNHDIRT 67
GAGKT L+ L +I ++RT
Sbjct: 22 GAGKTELARALLEELG-GGNVVRIDPDELRT 51
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 27.1 bits (60), Expect = 9.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 27 DQITSFLGHNGAGKTTTISMLMGMLPVSSG 56
DQ FLG +GAGKTT+ + L +++G
Sbjct: 86 DQSIIFLGRSGAGKTTSCKHALEYLALAAG 115
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.395
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,718,575
Number of extensions: 1204363
Number of successful extensions: 2280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1804
Number of HSP's successfully gapped: 528
Length of query: 251
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 156
Effective length of database: 6,723,972
Effective search space: 1048939632
Effective search space used: 1048939632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.8 bits)