RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7367
(251 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 239 bits (613), Expect = 8e-80
Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 2/221 (0%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+++L KR K + G++ E +I +G NGAGKTTT+ ++ ++ SSG ++
Sbjct: 18 VKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG 76
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
++ + +R+ + P+ + + E++ F + + + G+
Sbjct: 77 KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL 136
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-G 181
K +T S GM RKL +A A + R ILDEPTSG+D + R + ++L + + G
Sbjct: 137 GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196
Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSF 222
T+++++H M E + L DRIA+I G + G+ LK +
Sbjct: 197 LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 237
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 202 bits (517), Expect = 7e-66
Identities = 38/209 (18%), Positives = 85/209 (40%), Gaps = 15/209 (7%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
I++LS + K + + + + + +F G NG GKTT + + L G
Sbjct: 13 IRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 70
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
I ++ + P+ + K++VE+++ + L V + + EI + + + +
Sbjct: 71 VPIT----KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEV 124
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-- 180
+ L LS G R++ +A + + +LD+P +D S+ + + +++ K
Sbjct: 125 LDLKKKL-GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEK 183
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKL 209
G +I + + D +
Sbjct: 184 GIVIISSREELSYC----DVNENLHKYST 208
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 153 bits (388), Expect = 1e-45
Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 13/224 (5%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+ + + GK + ++ + G NGAGKTT +++L P +SGT ++
Sbjct: 24 LDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFG 82
Query: 63 HDI---RTDMTTIRRSLGVCPQ--YNALFDKLTVEE--HMWFYSQLK--QVPKDLAQLEI 113
T+R+ +G + V + + + Q D + E
Sbjct: 83 KMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEA 142
Query: 114 SNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWE 173
++ +G+ K LS G ++++ +A A +G + +ILDEP +G+D +R S+
Sbjct: 143 HQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS 202
Query: 174 L---LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
+ L +I TH+++E +I ++ G+ G+
Sbjct: 203 ILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 138 bits (349), Expect = 5e-40
Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 25/235 (10%)
Query: 3 IQNLSKRFPNG---KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
++N+ + ++ +N+ + LG NG+GKTT + + G+LP SG
Sbjct: 4 LKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLP-YSGNIF 61
Query: 60 IYNHDIRTDMTTIRRSLGVCPQYNALFDK-LTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
I ++ IR + ++ +TV + ++ Y +LK + +D M+
Sbjct: 62 INGMEV----RKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRD----LFLEMLK 113
Query: 119 DLGIPHKRTSLAN----TLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
L + + + LS G + ++A V LDEP VD R I
Sbjct: 114 ALKLGEE---ILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRY 170
Query: 175 LIKYKKGRTVILTTHYMDEADLLGDRIAIIAAG-KLQCCGS-SVFLKNSFARGYY 227
+ +Y K IL TH +D +L + A G +LQ S S L++S G
Sbjct: 171 IKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGER 223
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 133 bits (337), Expect = 4e-38
Identities = 66/222 (29%), Positives = 115/222 (51%), Gaps = 14/222 (6%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++ L+ + +G A+ G+N+N ++T+ LG NG GK+T G+L SSG N
Sbjct: 10 VEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDN 69
Query: 63 HDIRTD---MTTIRRSLGVCPQY--NALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
I + +R S+G+ Q N LF +V + + F + ++P+D + + N +
Sbjct: 70 KPIDYSRKGIMKLRESIGIVFQDPDNQLFSA-SVYQDVSFGAVNMKLPEDEIRKRVDNAL 128
Query: 118 VDLGIPHKRTSLANTLSGG-MQRKLSVAMAFI--GGSRTVILDEPTSGVDPYSRRSIWEL 174
GI H + + LS G +R VA+A + + +ILDEPT+G+DP I +L
Sbjct: 129 KRTGIEHLKDKPTHCLSFGQKKR---VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL 185
Query: 175 LIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
L++ +K G T+I+ TH +D L D + ++ G++ G+
Sbjct: 186 LVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 128 bits (324), Expect = 3e-36
Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 33/234 (14%)
Query: 1 MAI--QNLSKRFPNG----KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVS 54
M I N+S F G K A+ +++ E + G+ G+GK+T + ++ G++ +
Sbjct: 1 MRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 60
Query: 55 SGTAKIYNHDIRTDMTTIRRSLGVCPQY--NALFDKLTVEEHMWF--------YSQLKQV 104
SG + R IRR++G+ QY + F + V + + F + V
Sbjct: 61 SGD--VLYDGERKKGYEIRRNIGIAFQYPEDQFFAE-RVFDEVAFAVKNFYPDRDPVPLV 117
Query: 105 PKDLAQLEISNMIVDLGIPHKRTSLANTLSGG-MQRKLSVAMAFI--GGSRTVILDEPTS 161
K + + + +P LSGG +R VA+A + +ILDEP
Sbjct: 118 KKAMEFVGLDFDSFKDRVPFF-------LSGGEKRR---VAIASVIVHEPDILILDEPLV 167
Query: 162 GVDPYSRRSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
G+D + + ++ K+K G+TVIL +H ++ DR+ ++ GK G+
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 111 bits (280), Expect = 6e-30
Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 31/221 (14%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
++NL + LN + + I + LG NG GK+T + +L+G+ G ++Y
Sbjct: 7 VENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY- 65
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEE--------HMWFYSQLKQVPKDLAQLEIS 114
+S+G PQ+ + +V + H+ +++ K +A
Sbjct: 66 -----------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM---- 110
Query: 115 NMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
+ L + H +LSGG ++ + +A A + ++LDEPTS +D ++ + L
Sbjct: 111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSL 170
Query: 175 L--IKYKKGRTVILTTHYMDEADLLGDRIA-----IIAAGK 208
L + + TV+ TTH ++ + ++ G+
Sbjct: 171 LIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGE 211
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 101 bits (253), Expect = 9e-25
Identities = 42/202 (20%), Positives = 77/202 (38%), Gaps = 18/202 (8%)
Query: 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
+ K+ + +L V+ N E +I LG NG GKTT +L+G + G+
Sbjct: 274 KIIKKLGDFQLVVD--NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGS------- 324
Query: 65 IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH 124
+ + + PQ +F + + K + + L +
Sbjct: 325 VTPEKQILSYK----PQR--IFPNYDGTVQQYLENASKD-ALSTSSWFFEEVTKRLNLHR 377
Query: 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK--GR 182
S N LSGG +KL +A + +LD+P+S +D R + + + + +
Sbjct: 378 LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437
Query: 183 TVILTTHYMDEADLLGDRIAII 204
+ H + D + DRI +
Sbjct: 438 VTFIIDHDLSIHDYIADRIIVF 459
Score = 85.8 bits (213), Expect = 2e-19
Identities = 40/187 (21%), Positives = 77/187 (41%), Gaps = 12/187 (6%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI---YNHDIR----TDMTTIRRSLGVCP 80
I LG NG GKTT + +L G + + G + ++ ++ + L
Sbjct: 26 TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNE 85
Query: 81 QYNAL---FDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGM 137
+ + + + + + K + + + L + + AN LSGG
Sbjct: 86 L-KIVHKIQYVEYASKFL-KGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGG 143
Query: 138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTHYMDEADLL 197
++L VA + + + I D+P+S +D R ++ + + + K + VI+ H + D L
Sbjct: 144 LQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYL 203
Query: 198 GDRIAII 204
D I II
Sbjct: 204 TDLIHII 210
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 97.2 bits (243), Expect = 2e-24
Identities = 52/230 (22%), Positives = 100/230 (43%), Gaps = 31/230 (13%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+N+ K F A++G++++ + +T +G NG+GK+T I+++ G L G N
Sbjct: 10 TENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN 68
Query: 63 HDIRTDMTTIRR-SLGVCP--QYNALFDKLTVEEHM---------------WFYSQLKQ- 103
DI T+ G+ Q ++TV E++ ++ + +
Sbjct: 69 KDI-TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE 127
Query: 104 ---VPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPT 160
V K LE L + H A LSGG + + + A + + +++DEP
Sbjct: 128 EEMVEKAFKILEF------LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPI 181
Query: 161 SGVDPYSRRSIWELLIKYK-KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+GV P I+ +++ K KG T ++ H +D D + ++ G++
Sbjct: 182 AGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 98.9 bits (247), Expect = 8e-24
Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 26/205 (12%)
Query: 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
L K + G + + ++ +G NG GKTT + ML G+ + G
Sbjct: 362 RLVKDY--GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK------- 412
Query: 65 IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH 124
+ D+T + PQY + TV E K + + ++ LGI
Sbjct: 413 VEWDLTVAYK-----PQYIKAEYEGTVYE--LLSKIDS--SKLNSNFYKTELLKPLGIID 463
Query: 125 KRTSLANTLSGG-MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKG 181
LSGG +QR +++A + + +LDEP++ +D R ++ + K
Sbjct: 464 LYDRNVEDLSGGELQR-VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE 522
Query: 182 RTVILTTH--YMDEADLLGDRIAII 204
+T ++ H M D + DR+ +
Sbjct: 523 KTALVVEHDVLM--IDYVSDRLIVF 545
Score = 80.8 bits (200), Expect = 1e-17
Identities = 39/218 (17%), Positives = 84/218 (38%), Gaps = 28/218 (12%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK---- 59
++ R+ + L + + + +G NG GKTT + +L G L +
Sbjct: 95 EDCVHRYGVNAFVLYRLPI-VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 153
Query: 60 -IYNHDIRTDMTTIRRSLGVC-------PQYNALFDKLTVEEHMWFYSQLKQV-PKDLAQ 110
+ ++ L PQY L K +++++ K
Sbjct: 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKG-------KVRELLKKVDEV 206
Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
+ ++ +L + + + LSGG +++++A A + + DEP+S +D R
Sbjct: 207 GKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLK 266
Query: 171 IWELLIKYKK-GRTVILTTH---YMDEADLLGDRIAII 204
+ ++ + G+ V++ H +D L D I ++
Sbjct: 267 VARVIRRLANEGKAVLVVEHDLAVLDY---LSDVIHVV 301
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 98.6 bits (246), Expect = 9e-24
Identities = 44/210 (20%), Positives = 84/210 (40%), Gaps = 20/210 (9%)
Query: 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
A S + G +N F + +I +G NG GKTT I +L G L G
Sbjct: 353 AFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ---- 408
Query: 62 NHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLG 121
+ ++ + PQ A TV F+ +++ + L ++++ L
Sbjct: 409 --------DIPKLNVSMKPQKIAPKFPGTV--RQLFFKKIR--GQFLNPQFQTDVVKPLR 456
Query: 122 IPHKRTSLANTLSGG-MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-- 178
I LSGG +QR +++ +A + ++DEP++ +D R +++ ++
Sbjct: 457 IDDIIDQEVQHLSGGELQR-VAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL 515
Query: 179 KKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
+T + H A L D++ +
Sbjct: 516 HNKKTAFIVEHDFIMATYLADKVIVFEGIP 545
Score = 97.8 bits (244), Expect = 2e-23
Identities = 39/215 (18%), Positives = 87/215 (40%), Gaps = 17/215 (7%)
Query: 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG-------- 56
+++ R+ ++ L Q+ +G NG GK+T + +L G + G
Sbjct: 82 HVTHRYSANSFKLHRLPT-PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEW 140
Query: 57 --TAKIYN-HDIRTDMTTIR---RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQ 110
K + +++ T + + PQY + ++ + +L ++ + +
Sbjct: 141 QEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR-AIKGPVQKVGELLKLRMEKSP 199
Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
++ I L + + LSGG ++ ++ M+ + + + DEP+S +D R +
Sbjct: 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLN 259
Query: 171 IWELLIKYKK-GRTVILTTHYMDEADLLGDRIAII 204
+++ + VI H + D L D + II
Sbjct: 260 AAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII 294
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 94.2 bits (235), Expect = 1e-23
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 11/213 (5%)
Query: 5 NLSKRFPNGKLAVNGLNVNFYEDQ-ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
KR N +L NV+F + LG GAGK+ + ++ G++ G ++
Sbjct: 6 RAEKRLGNFRL-----NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGA 60
Query: 64 DIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIP 123
DI T + RR +G PQ ALF L+V ++ + L+ V + + M LGI
Sbjct: 61 DI-TPLPPERRGIGFVPQDYALFPHLSVYRNIAY--GLRNVERVERDRRVREMAEKLGIA 117
Query: 124 HKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSI-WELL-IKYKKG 181
H LSGG ++++++A A + R ++LDEP S VD ++ + EL ++ +
Sbjct: 118 HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD 177
Query: 182 RTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
++ TH + EA +L D +A++ G++ G
Sbjct: 178 VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 93.8 bits (234), Expect = 3e-23
Identities = 39/212 (18%), Positives = 84/212 (39%), Gaps = 17/212 (8%)
Query: 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTI 72
+ L+ +I +G NGAGK+T ++ + GM G+ + + +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLE-AWSAT 69
Query: 73 R--RSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLA 130
+ Q V Y L Q K +L ++++ L + K
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWH----YLTLHQHDKTRTEL-LNDVAGALALDDKLGRST 124
Query: 131 NTLSGGMQRKLSVAMA-------FIGGSRTVILDEPTSGVDPYSRRSIWELLIKY-KKGR 182
N LSGG +++ +A + ++LDEP + +D + ++ ++L ++G
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGL 184
Query: 183 TVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
+++++H ++ R ++ GK+ G
Sbjct: 185 AIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 94.3 bits (235), Expect = 2e-22
Identities = 47/203 (23%), Positives = 83/203 (40%), Gaps = 22/203 (10%)
Query: 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHD 64
L K + G + + ++ +G NG GKTT + ML G+ + G
Sbjct: 292 RLVKDY--GSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK------- 342
Query: 65 IRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPH 124
I D+T + PQY + TV E K + + ++ LGI
Sbjct: 343 IEWDLTVAYK-----PQYIKADYEGTVYE--LLSKIDA--SKLNSNFYKTELLKPLGIID 393
Query: 125 KRTSLANTLSGG-MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKY--KKG 181
N LSGG +QR +++A + + +LDEP++ +D R ++ + K
Sbjct: 394 LYDREVNELSGGELQR-VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE 452
Query: 182 RTVILTTHYMDEADLLGDRIAII 204
+T ++ H + D + DR+ +
Sbjct: 453 KTALVVEHDVLMIDYVSDRLMVF 475
Score = 79.3 bits (196), Expect = 4e-17
Identities = 40/213 (18%), Positives = 85/213 (39%), Gaps = 20/213 (9%)
Query: 5 NLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP------VSSGTA 58
+ R+ + L V E + +G NG GK+T + +L G L S
Sbjct: 26 DCVHRYGVNAFVLYRLPV-VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDG 84
Query: 59 KIYN---HDIRTDMTTIR-RSLGVCP--QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE 112
I ++++ ++ + QY L K + ++ + K +
Sbjct: 85 VIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGK------VIELLKKADETGK 138
Query: 113 ISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172
+ ++ L + + LSGG +++++A A + + DEP+S +D R +
Sbjct: 139 LEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA 198
Query: 173 ELLIKYKK-GRTVILTTHYMDEADLLGDRIAII 204
+ + + G++V++ H + D L D I ++
Sbjct: 199 RAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 91.5 bits (228), Expect = 1e-21
Identities = 57/210 (27%), Positives = 109/210 (51%), Gaps = 8/210 (3%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
I++LS+++ +++ L++ + LG GAGKT + ++ G SG +
Sbjct: 4 IESLSRKW--KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDG 61
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
D+ TD++ + + Q +LF + V++++ F ++K++ L+ + L I
Sbjct: 62 KDV-TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARD---LKI 117
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS-IWEL-LIKYKK 180
H TLSGG Q+++++A A + + ++LDEP S +DP ++ + L ++ K
Sbjct: 118 EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN 177
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
TV+ TH EA ++ DRIA++ GKL
Sbjct: 178 KLTVLHITHDQTEARIMADRIAVVMDGKLI 207
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 90.7 bits (226), Expect = 2e-21
Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 22/221 (9%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
I +LSK F +N ++++ +I +G +G GKTT + L G SG +
Sbjct: 7 IGHLSKSF-QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSG 65
Query: 63 HDIRTDMTTI---RRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVD 119
I + T + R LG Q LF LTV ++ + + + I M+
Sbjct: 66 KTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLEL 125
Query: 120 LGIPHKRTSLANTLSGGM-QRKLSVAMAFIGGSRTVI-------LDEPTSGVDPYSRRSI 171
GI + LSGG QR A+A R + LDEP S +D RR I
Sbjct: 126 TGISELAGRYPHELSGGQQQR---AALA-----RALAPDPELILLDEPFSALDEQLRRQI 177
Query: 172 -WELL-IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
+++ G++ + +H +EA DRIA++ G++
Sbjct: 178 REDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL 218
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 90.4 bits (225), Expect = 2e-21
Identities = 55/214 (25%), Positives = 109/214 (50%), Gaps = 3/214 (1%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN 62
+ K +P G +V G++ E ++ LG +G+GKTT + ++ G+ + G I
Sbjct: 17 FVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGG 76
Query: 63 HDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGI 122
+ TD+ +R++G+ Q ALF +TV +++ F + K+VPKD + ++ + +
Sbjct: 77 KRV-TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRL 135
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS--IWELLIKYKK 180
+ LSGG Q+++++A A + ++ DEP + +D RR + + +
Sbjct: 136 ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM 195
Query: 181 GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
G T + TH +EA + DR+ ++ G ++ G+
Sbjct: 196 GVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGT 229
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 88.9 bits (221), Expect = 8e-21
Identities = 61/216 (28%), Positives = 116/216 (53%), Gaps = 9/216 (4%)
Query: 3 IQNLSKRFPNGK---LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAK 59
+ N++K F G A+N ++++ QI +G +GAGK+T I + + + G+
Sbjct: 27 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL 86
Query: 60 IYNHDI----RTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISN 115
+ ++ +++T RR +G+ Q+ L TV ++ +L PKD + ++
Sbjct: 87 VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTE 146
Query: 116 MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
++ +G+ K S + LSGG ++++++A A + ++ D+ TS +DP + RSI ELL
Sbjct: 147 LLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206
Query: 176 --IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
I + G T++L TH MD + D +A+I+ G+L
Sbjct: 207 KDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 80.2 bits (199), Expect = 3e-18
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 19/183 (10%)
Query: 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTT--- 71
A+ G+++ QI + +G NGAGKTTT+S + G++ G DI T+
Sbjct: 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI-TNKPAHVI 78
Query: 72 IRRSLGVCPQYNALFDKLTVEEHM----WFYSQLKQVPKDLAQLEISNMIVDLGIP---H 124
R + + P+ +F +LTV E++ + + + +DL I L P
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLE------WIFSL-FPRLKE 131
Query: 125 KRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRT 183
+ L TLSGG Q+ L++ A + + +++DEP+ G+ P ++E++ K + G T
Sbjct: 132 RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTT 191
Query: 184 VIL 186
++L
Sbjct: 192 ILL 194
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 81.5 bits (202), Expect = 3e-18
Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 34/236 (14%)
Query: 1 MA---IQNLSKRFPNGKL-AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSG 56
M ++N+SK F GK+ A++ +N+N + LG +GAGKTT + ++ G+ S+G
Sbjct: 1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60
Query: 57 TAKI----YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE 112
+ + + R +G+ Q AL+ LT E++ F ++ K+ E
Sbjct: 61 ELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE----E 116
Query: 113 ISNMIVD----LGIPHKRTSLANTLSGG-MQRKLSVAMAFIGGSRTVI-------LDEPT 160
I + + L I H LSG QR VA+A R ++ LDEP
Sbjct: 117 IRKRVEEVAKILDIHHVLNHFPRELSGAQQQR---VALA-----RALVKDPSLLLLDEPF 168
Query: 161 SGVDPYSRRSIWELLIKYKK--GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
S +D R S L+ + + G T+++ +H + + DR+ ++ GKL G
Sbjct: 169 SNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 70.2 bits (173), Expect = 7e-15
Identities = 51/220 (23%), Positives = 107/220 (48%), Gaps = 22/220 (10%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGML--PVSSGTAKI 60
+N+ K + + G++++ + + S +G +G+GK+T + +L G+L P + G +
Sbjct: 7 AENIKKVIRGYE-ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAP-TEGKVFL 63
Query: 61 YNHDIRT----DMTTIR-RSLG-VCPQYNALFDKLTVEEH----MWFYSQLKQVPKDLAQ 110
++ +++ +R R LG V + L +LT E+ M PK A+
Sbjct: 64 EGKEVDYTNEKELSLLRNRKLGFVFQFHY-LIPELTALENVIVPMLK----MGKPKKEAK 118
Query: 111 LEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRS 170
++ +LG+ K + LSGG Q+++++A A + DEPT +D + +
Sbjct: 119 ERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR 178
Query: 171 IWELLIK-YKKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
+ ++ +K + G ++++ TH + A+ L R + GK+
Sbjct: 179 VMDIFLKINEGGTSIVMVTHERELAE-LTHRTLEMKDGKV 217
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 71.6 bits (176), Expect = 2e-14
Identities = 55/203 (27%), Positives = 99/203 (48%), Gaps = 18/203 (8%)
Query: 18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSL 76
GLN+ Q + +G++G GK+TT+ ++ + G I DIRT ++ +R +
Sbjct: 407 KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII 466
Query: 77 GVCPQYNALFDKLTVEEHMWF---YSQLKQVPKDLAQLEISNMIVDLGIPHK-RTSL--- 129
GV Q LF T+ E++ + + ++ K + + + I+ L PH+ T +
Sbjct: 467 GVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL--PHQFDTLVGER 523
Query: 130 ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH 189
LSGG ++++++A A + + ++LDE TS +D S + L K ++GRT I+ H
Sbjct: 524 GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAH 583
Query: 190 YMD---EADLLGDRIAIIAAGKL 209
+ A D IA G +
Sbjct: 584 RLSTVRNA----DVIAGFDGGVI 602
Score = 69.3 bits (170), Expect = 1e-13
Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 26/208 (12%)
Query: 18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSL 76
GL++ + Q + +G +G GK+T + +L +G+ + +I+ ++ +R L
Sbjct: 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQL 1109
Query: 77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-------ISNMIVDLGIPHK-RTS 128
G+ Q LFD ++ E++ + + V + ++ I I L P K T
Sbjct: 1110 GIVSQEPILFDC-SIAENIAYGDNSRVVSYE--EIVRAAKEANIHQFIDSL--PDKYNTR 1164
Query: 129 L---ANTLSGG-MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTV 184
+ LSGG QR +++A A + ++LDE TS +D S + + E L K ++GRT
Sbjct: 1165 VGDKGTQLSGGQKQR-IAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTC 1223
Query: 185 ILTTHY---MDEADLLGDRIAIIAAGKL 209
I+ H + A D I +I GK+
Sbjct: 1224 IVIAHRLSTIQNA----DLIVVIQNGKV 1247
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 69.0 bits (170), Expect = 3e-14
Identities = 57/248 (22%), Positives = 110/248 (44%), Gaps = 37/248 (14%)
Query: 11 PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM 69
P+ + ++ +N++ + ++ +G +G+GK+T ++ +G I HD+ D
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 78
Query: 70 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS---------NMIVDL 120
+RR +GV Q N L ++ ++ +++ + ++ ++ + I +L
Sbjct: 79 NWLRRQVGVVLQDNVLLNR-SIIDNISLANP------GMSVEKVIYAAKLAGAHDFISEL 131
Query: 121 GIPHK-RTSLA---NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI 176
T + LSGG ++++++A A + + +I DE TS +D S I +
Sbjct: 132 --REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189
Query: 177 KYKKGRTVILTTHYMD---EADLLGDRIAIIAAGKLQCCGS-SVFLKNSFARGYYLSLDM 232
K KGRTVI+ H + A DRI ++ GK+ G L Y L
Sbjct: 190 KICKGRTVIIIAHRLSTVKNA----DRIIVMEKGKIVEQGKHKELLSEP--ESLYSYL-- 241
Query: 233 KSAQLQAE 240
QLQ++
Sbjct: 242 --YQLQSD 247
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 67.8 bits (166), Expect = 3e-13
Identities = 54/260 (20%), Positives = 108/260 (41%), Gaps = 35/260 (13%)
Query: 3 IQNLSKRF-PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+++L+ ++ G + ++ + Q LG G+GK+T +S + +L + G +I
Sbjct: 22 VKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQID 80
Query: 62 NHDIRT-DMTTIRRSLGVCPQYNALF-----------DKLTVEEHMWF---YSQLKQVPK 106
+ + R++ GV PQ +F + +E +W L+ V +
Sbjct: 81 GVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE-IWKVADEVGLRSVIE 139
Query: 107 DLAQLEISNMIVDLGIPHKRTSLANTLSGGMQRKL-SVAMAFIGGSRTVILDEPTSGVDP 165
++ ++VD G LS G ++L +A + + ++ ++LDEP++ +DP
Sbjct: 140 QFPG-KLDFVLVDGG---------CVLSHG-HKQLMCLARSVLSKAKILLLDEPSAHLDP 188
Query: 166 YSRRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS-SVFLKNS--- 221
+ + I L + TVIL + EA L D+ +I K++ S
Sbjct: 189 VTYQIIRRTLKQAFADCTVILCEARI-EAMLECDQFLVIEENKVRQYDSILELYHYPADR 247
Query: 222 FARGYYLSLDMKSAQLQAED 241
F G+ S M ++
Sbjct: 248 FVAGFIGSPKMNFLPVKVTA 267
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 67.6 bits (166), Expect = 3e-13
Identities = 67/233 (28%), Positives = 114/233 (48%), Gaps = 35/233 (15%)
Query: 1 MA---IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
M ++N+ K+F N A+N +N+ + + + LG +G+GK+T + + G+ +SG
Sbjct: 1 MVEIKLENIVKKFGNFT-ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 58 AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
D+ T++ R++G+ Q AL+ +TV +++ F +L++ P++ EI +
Sbjct: 60 IYFDEKDV-TELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPRE----EIDKKV 114
Query: 118 VD----LGIPHKRTSLANTLSGG-MQRKLSVAMAFIGGSRTVI-------LDEPTSGVDP 165
+ L I LSGG QR VA+A R ++ LDEP S +D
Sbjct: 115 REVAKMLHIDKLLNRYPWQLSGGQQQR---VAIA-----RALVKEPEVLLLDEPLSNLDA 166
Query: 166 YSR---RSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
R R+ EL K+ G T + TH EA + DRIA+I G++ G+
Sbjct: 167 LLRLEVRA--ELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGT 217
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 66.9 bits (164), Expect = 4e-13
Identities = 70/244 (28%), Positives = 109/244 (44%), Gaps = 51/244 (20%)
Query: 1 MA---IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
MA + ++ K F AV +++ + + LG +G GKTTT+ M+ G+ S G
Sbjct: 1 MAGVRLVDVWKVFGEVT-AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 58 AKIYNHDIRTDMTTIRRSLGVCP---------QYNALFDKLTVEEHMWFYSQLKQVPKDL 108
I + + + + V P Q AL+ +TV +++ F +L++VP+
Sbjct: 60 IYIGD----KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQ- 114
Query: 109 AQLEISNMIVD----LGIPH--KRTSLANTLSGG-MQRKLSVAMAFIGGSRTVI------ 155
EI + + LG+ R LSGG QR VA+ R ++
Sbjct: 115 ---EIDQRVREVAELLGLTELLNRKPRE--LSGGQRQR---VALG-----RAIVRKPQVF 161
Query: 156 -LDEPTSGVDPYSR---RSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
+DEP S +D R R+ EL ++ G T I TH EA +GDRIA++ G LQ
Sbjct: 162 LMDEPLSNLDAKLRVRMRA--ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ 219
Query: 211 CCGS 214
GS
Sbjct: 220 QVGS 223
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 65.6 bits (161), Expect = 4e-13
Identities = 55/224 (24%), Positives = 110/224 (49%), Gaps = 19/224 (8%)
Query: 3 IQNLSKRFPNGKLAV---NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPV-SSGTA 58
++N++K + G+ + +N+N E + S +G +G+GK+T ++++ G L + G
Sbjct: 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEV 62
Query: 59 KIYNHDI----RTDMTTIRR-SLG-VCPQYNALFDKLTVEEHM---WFYSQLKQVPKDLA 109
I N ++T IRR +G V Q+N L LT E++ + + +
Sbjct: 63 YIDNIKTNDLDDDELTKIRRDKIGFVFQQFN-LIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 110 QLEISNMIVDLGIPHKRTS-LANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSR 168
+ + + + + N LSGG Q+++++A A ++ D+PT +D +
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTG 181
Query: 169 RSIWELLIK--YKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
I +LL K + G+TV++ TH ++ A G+RI + G+++
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGEVE 224
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 64.9 bits (159), Expect = 1e-12
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 23/176 (13%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMT--TIRRSLGVCPQYNAL 85
Q + +G +GAGK+T + +L +SSG +I DI +T ++R +GV PQ L
Sbjct: 81 QTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDIS-QVTQASLRSHIGVVPQDTVL 139
Query: 86 FDKLTVEEHMWFYSQLKQVPKDL---AQL-EISNMIVDLGIPHKRTSLANT--------L 133
F+ T+ +++ Y ++ ++ AQ I + I+ P T L
Sbjct: 140 FND-TIADNI-RYGRVTAGNDEVEAAAQAAGIHDAIMAF--PEGY----RTQVGERGLKL 191
Query: 134 SGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH 189
SGG ++++++A + ++LDE TS +D + R+I L K RT I+ H
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAH 247
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 63.6 bits (156), Expect = 3e-12
Identities = 43/203 (21%), Positives = 87/203 (42%), Gaps = 28/203 (13%)
Query: 4 QNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNH 63
+++ + + + + ++ + I +F G +G GK+T S+L ++G I
Sbjct: 5 RHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
Query: 64 DIRT-DMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD-------LAQLE--I 113
I + R +G Q +A+ T+ E++ Y + LA +
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAG-TIRENL-TYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 114 SNM-------IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPY 166
NM + + G+ +SGG +++L++A AF+ + ++LDE T+ +D
Sbjct: 123 ENMPDQLNTEVGERGV---------KISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173
Query: 167 SRRSIWELLIKYKKGRTVILTTH 189
S + + L KGRT ++ H
Sbjct: 174 SESMVQKALDSLMKGRTTLVIAH 196
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 64.6 bits (158), Expect = 3e-12
Identities = 74/233 (31%), Positives = 112/233 (48%), Gaps = 35/233 (15%)
Query: 1 MA---IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
M ++NL+KRF N AVN LN+ + + LG +G GKTTT+ M+ G+ + G
Sbjct: 9 MVEVKLENLTKRFGNFT-AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 58 AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
+ D+ T + R++ + Q A++ +TV E++ F ++K+ PKD EI +
Sbjct: 68 IYFGDRDV-TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD----EIDKRV 122
Query: 118 VD----LGIPHKRTSLANTLSGG-MQRKLSVAMAFIGGSRTVI-------LDEPTSGVDP 165
L I LSGG QR VA+A R ++ +DEP S +D
Sbjct: 123 RWAAELLQIEELLNRYPAQLSGGQRQR---VAVA-----RAIVVEPDVLLMDEPLSNLDA 174
Query: 166 YSR---RSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
R R+ E+ +K T I TH EA +GDRIA++ G+L GS
Sbjct: 175 KLRVAMRA--EIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 225
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 62.6 bits (153), Expect = 1e-11
Identities = 69/235 (29%), Positives = 109/235 (46%), Gaps = 39/235 (16%)
Query: 1 MA---IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
M + NL K F AV+G++ + + + LG +G GKTTT+ ML G+ +SG
Sbjct: 1 MPSIRVVNLKKYF-GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 58 AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
+ + D+ R +G+ Q AL+ +TV E++ F + +++ KD E+ +
Sbjct: 60 IYFDDVLV-NDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKD----EVEKRV 114
Query: 118 VD----LGIPH--KRTSLANTLSGG-MQRKLSVAMAFIGGSRTVI-------LDEPTSGV 163
V+ L I + R LSGG QR VA+A R ++ DEP S +
Sbjct: 115 VEIARKLLIDNLLDRKPTQ--LSGGQQQR---VALA-----RALVKQPKVLLFDEPLSNL 164
Query: 164 DPYSR---RSIWELLIKYKK-GRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGS 214
D R R+ E+ ++ G T + TH EA + RIA+ GKL G+
Sbjct: 165 DANLRMIMRA--EIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGT 217
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 61.8 bits (151), Expect = 3e-11
Identities = 45/190 (23%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 11 PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM 69
A+ +N+ + + +G +G+GK+T S++ + G + HD+R +
Sbjct: 353 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL 412
Query: 70 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD--LAQLEISN---MIVDLGIPH 124
++R + + Q LF+ TV ++ Y++ ++ ++ ++ I + +
Sbjct: 413 ASLRNQVALVSQNVHLFND-TVANNI-AYARTEEYSREQIEEAARMAYAMDFINKM--DN 468
Query: 125 K-RTSL---ANTLSGGMQR-KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
T + LSGG QR ++++A A + S +ILDE TS +D S R+I L + +
Sbjct: 469 GLDTIIGENGVLLSGG-QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527
Query: 180 KGRTVILTTH 189
K RT ++ H
Sbjct: 528 KNRTSLVIAH 537
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 58.6 bits (142), Expect = 4e-11
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 11/118 (9%)
Query: 89 LTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSL-ANTLSGG-MQR-----KL 141
E +++ + + V L + + LSGG +L
Sbjct: 13 KIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRL 72
Query: 142 SVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTH---YMDEAD 195
++++ G +ILDEPT +D RR + ++ +Y K VIL +H D AD
Sbjct: 73 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 130
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 60.3 bits (147), Expect = 4e-11
Identities = 58/221 (26%), Positives = 113/221 (51%), Gaps = 24/221 (10%)
Query: 3 IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+ L K F G L V G+NV+ E ++ +G +G+GK+T + L + G I
Sbjct: 27 VHQLKKSF--GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIID 84
Query: 62 NHDI---RTDMTTIRRSLG-VCPQYNALFDKLTVEEH-----MWFYSQLKQVPKDLAQLE 112
++ T++ +R +G V ++N LF +TV + M +++ P++ A+ +
Sbjct: 85 GINLKAKDTNLNKVREEVGMVFQRFN-LFPHMTVLNNITLAPMK----VRKWPREKAEAK 139
Query: 113 ISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIW 172
++ +G+ K + ++LSGG +++++A A + ++ DEPTS +DP +
Sbjct: 140 AMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP---EMVG 196
Query: 173 ELL--IKY--KKGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
E+L +K +G T+++ TH M A +GDR+ + G +
Sbjct: 197 EVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYI 237
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 61.1 bits (149), Expect = 5e-11
Identities = 47/190 (24%), Positives = 95/190 (50%), Gaps = 16/190 (8%)
Query: 11 PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM 69
K A++ ++ + + + + +G +G+GK+T ++ V SG+ + HD+R +
Sbjct: 353 GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKL 412
Query: 70 TTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKD--LAQLEISN---MIVDLGIPH 124
T +RR + Q LF+ T+ ++ Y+ + ++ ++ I ++ P
Sbjct: 413 TNLRRHFALVSQNVHLFND-TIANNI-AYAAEGEYTREQIEQAARQAHAMEFIENM--PQ 468
Query: 125 K-RTSL---ANTLSGGMQR-KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
T + +LSGG QR ++++A A + + +ILDE TS +D S R+I L + +
Sbjct: 469 GLDTVIGENGTSLSGG-QRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ 527
Query: 180 KGRTVILTTH 189
K +TV++ H
Sbjct: 528 KNKTVLVIAH 537
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 59.1 bits (144), Expect = 9e-11
Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 47/223 (21%)
Query: 11 PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMT 70
G + +N Q+ + G GAGKT+ + M+MG L S G K
Sbjct: 18 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK----------- 66
Query: 71 TIRRSLGVCPQY----------NALFDKLTVEEHMWFYSQLKQV---PKDLAQLEISNM- 116
+ C Q+ N +F E Y + + +D+++ +
Sbjct: 67 -HSGRISFCSQFSWIMPGTIKENIIFGVSYDEY---RYRSVIKACQLEEDISKFAEKDNI 122
Query: 117 -IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
+ + GI TLSGG + ++S+A A + +LD P +D + + I+E
Sbjct: 123 VLGEGGI---------TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 173
Query: 176 IK-YKKGRTVILTTH---YMDEADLLGDRIAIIAAGKLQCCGS 214
+ +T IL T ++ +A D+I I+ G G+
Sbjct: 174 VCKLMANKTRILVTSKMEHLKKA----DKILILHEGSSYFYGT 212
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 57.6 bits (140), Expect = 3e-10
Identities = 54/225 (24%), Positives = 91/225 (40%), Gaps = 49/225 (21%)
Query: 11 PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMT 70
+ +NG+ + E + + +G G GK++ +S L+ + G I
Sbjct: 15 RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------- 66
Query: 71 TIRRSLGVCPQY----------NALFDKLTVEEHMWFYSQLKQV---PKDLAQLEISNM- 116
S+ PQ N LF E +Y + Q DL L +
Sbjct: 67 ----SVAYVPQQAWIQNDSLRENILFGCQLEEP---YYRSVIQACALLPDLEILPSGDRT 119
Query: 117 -IVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL 175
I + G+ LSGG ++++S+A A + + D+P S VD + + I+E +
Sbjct: 120 EIGEKGV---------NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
Query: 176 IKYK---KGRTVILTTH---YMDEADLLGDRIAIIAAGKLQCCGS 214
I K K +T IL TH Y+ + D I +++ GK+ GS
Sbjct: 171 IGPKGMLKNKTRILVTHSMSYLPQV----DVIIVMSGGKISEMGS 211
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 57.2 bits (139), Expect = 4e-10
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 28/186 (15%)
Query: 21 NVNFYED--QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLG 77
++NF+ + +GH G+GK+T +L G KI ++ + +IR +G
Sbjct: 38 SINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIG 96
Query: 78 VCPQYNALFDKLTVEEHMWF------YSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLAN 131
+ PQ LF++ T++ ++ + ++ + K AQ + + I L P K +
Sbjct: 97 IVPQDTILFNE-TIKYNILYGKLDATDEEVIKATK-SAQ--LYDFIEAL--PKKW----D 146
Query: 132 T--------LSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRT 183
T LSGG ++++++A + + VI DE TS +D + + + +K RT
Sbjct: 147 TIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRT 206
Query: 184 VILTTH 189
+I+ H
Sbjct: 207 LIIIAH 212
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 57.4 bits (139), Expect = 5e-10
Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 48/216 (22%)
Query: 18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMTTIRRSLG 77
+N Q+ + G GAGKT+ + M+MG L S G K +
Sbjct: 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH------------SGRIS 102
Query: 78 VCPQY----------NALFDKLTVEEHMWFYSQLKQV---PKDLAQLEISNM--IVDLGI 122
C Q N + +E+ Y + + +D+++ + + + GI
Sbjct: 103 FCSQNSWIMPGTIKENIIGVSY--DEY--RYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 123 PHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLI-KYKKG 181
TLSGG + ++S+A A + +LD P +D + + I+E + K
Sbjct: 159 ---------TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 209
Query: 182 RTVILTTH---YMDEADLLGDRIAIIAAGKLQCCGS 214
+T IL T ++ +A D+I I+ G G+
Sbjct: 210 KTRILVTSKMEHLKKA----DKILILHEGSSYFYGT 241
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 57.4 bits (138), Expect = 1e-09
Identities = 36/210 (17%), Positives = 80/210 (38%), Gaps = 23/210 (10%)
Query: 1 MAIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKI 60
+ S + K+ +N + + G NG GK+T + + ++
Sbjct: 436 LCNCEFSLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV 486
Query: 61 YNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
+ + R++ V + +V + ++ + + I + +++
Sbjct: 487 DGFPTQEEC----RTVYVEHDIDGTHSDTSVLDFVF------ESGVGTKE-AIKDKLIEF 535
Query: 121 GIPHKRTSLA-NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYK 179
G + ++ + LSGG + KL++A A + + ++LDEPT+ +D + + L
Sbjct: 536 GFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG 595
Query: 180 KGRTVILTTHYMDEADLLGDRIAIIAAGKL 209
T I +H D + + I KL
Sbjct: 596 --ITSITISHDSVFLDNVCEYIINYEGLKL 623
Score = 56.2 bits (135), Expect = 3e-09
Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 16/223 (7%)
Query: 2 AIQNLSKRFPNGK----LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
+ + RF G+ + +N + + + + + ++
Sbjct: 757 PSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYE 816
Query: 58 AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHM--------WFYSQLKQVPKDLA 109
+ R + + NA + + E + + L
Sbjct: 817 YECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLT 876
Query: 110 QLEISNMIVDLGIPHKRTSLA--NTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYS 167
+ EI LG+ + S + LSGG + KL +A ++LDEPT+ +D S
Sbjct: 877 RKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936
Query: 168 RRSIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQ 210
++ + L +++ VI+ TH + L + + + G++
Sbjct: 937 LGALSKALKEFEG--GVIIITHSAEFTKNLTEEVWAVKDGRMT 977
Score = 48.5 bits (115), Expect = 1e-06
Identities = 28/207 (13%), Positives = 68/207 (32%), Gaps = 15/207 (7%)
Query: 3 IQNLSKRFPNG-KLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+ N+ ++P K + +N + +G NGAGK+T I++L G L +SG
Sbjct: 674 VTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT- 732
Query: 62 NHDIRTDMTTIRRSLGVCPQYNALF-DKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDL 120
+ + R + Q+ + + + Q +D ++ +N ++
Sbjct: 733 HENCR---------IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINE 783
Query: 121 GIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK 180
+ + + G +R + + G + + W ++
Sbjct: 784 N-DAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDN 842
Query: 181 GRTVI--LTTHYMDEADLLGDRIAIIA 205
L + + + A+ +
Sbjct: 843 AWIPRGELVESHSKMVAEVDMKEALAS 869
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 55.6 bits (135), Expect = 2e-09
Identities = 58/246 (23%), Positives = 105/246 (42%), Gaps = 52/246 (21%)
Query: 3 IQNLSKRFPNGKLAV-NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIY 61
+ +L KR+ G V G+++ + S +G +G+GK+T + + + S G +
Sbjct: 9 VIDLHKRY--GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 66
Query: 62 NHDIR--------------TDMTTIRRSLG-VCPQYNALFDKLTVEEH-MWFYSQLKQVP 105
+I + +R L V +N L+ +TV E+ M Q+ +
Sbjct: 67 GQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN-LWSHMTVLENVMEAPIQVLGLS 125
Query: 106 KDLAQLEISNMIVDLGIPHK-RTSLANTLSGG-MQRKLSVAMAFIGGSRT------VIL- 156
K A+ + +GI + + LSGG QR V++A R V+L
Sbjct: 126 KHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR---VSIA-----RALAMEPDVLLF 177
Query: 157 DEPTSGVDPYSRRSIWEL------LIKY--KKGRTVILTTHYMDEADLLGDRIAIIAAGK 208
DEPTS +DP EL +++ ++G+T+++ TH M A + + + GK
Sbjct: 178 DEPTSALDP-------ELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 230
Query: 209 LQCCGS 214
++ G
Sbjct: 231 IEEEGD 236
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 55.2 bits (134), Expect = 3e-09
Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 31/211 (14%)
Query: 18 NGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSL 76
GL Y ++T+ +G NG+GK+T ++L + + G + + D + +
Sbjct: 36 QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQV 95
Query: 77 GVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEIS---------NMIVDLGIPHK-R 126
Q LF + + E++ + + + EI+ + I P
Sbjct: 96 AAVGQEPLLFGR-SFRENIAY-----GLTRTPTMEEITAVAMESGAHDFISGF--PQGYD 147
Query: 127 TSL---ANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELL--IKYKKG 181
T + N LSGG ++ +++A A I R +ILD TS +D ++ + LL
Sbjct: 148 TEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWAS 207
Query: 182 RTVILTTHYM---DEADLLGDRIAIIAAGKL 209
RTV+L T + + A I + G +
Sbjct: 208 RTVLLITQQLSLAERA----HHILFLKEGSV 234
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 54.1 bits (131), Expect = 1e-08
Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 15/169 (8%)
Query: 28 QITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRRSLGVCPQYNALF 86
+ + LG G+GK+T ++++ ++ G ++ D+RT + +R + PQ LF
Sbjct: 370 SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLF 429
Query: 87 DKLTVEEHMWF------YSQLKQVPKDLAQLE--ISNMIVDLGIPHKRTSLANTLSGGM- 137
T++E++ + ++ + K +AQ+ I ++ G + SGG
Sbjct: 430 SG-TIKENLKWGREDATDDEIVEAAK-IAQIHDFIISL--PEGYDSRVERGGRNFSGGQK 485
Query: 138 QRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVIL 186
QR LS+A A + + +ILD+ TS VDP + + I + L +Y KG T +
Sbjct: 486 QR-LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFI 533
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 2e-08
Identities = 54/231 (23%), Positives = 81/231 (35%), Gaps = 70/231 (30%)
Query: 15 LAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLP---VSSGTAK-IY--NHDIRTD 68
L+++ L +D + H AGK IS++ G V SG + +Y N +R
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG--AKNLVVSGPPQSLYGLNLTLR-- 394
Query: 69 MTTIRRSLGVCPQYNALFDK---------LTVEEHMWFYSQL-----KQVPKDLAQLEIS 114
+ G Q F + L V F+S L + KDL + +S
Sbjct: 395 --KAKAPSG-LDQSRIPFSERKLKFSNRFLPVASP--FHSHLLVPASDLINKDLVKNNVS 449
Query: 115 NMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTV--ILDEPTSGVDPYSRRSIW 172
D+ IP + +T G R LS +++ R V I+ P V W
Sbjct: 450 FNAKDIQIP-----VYDTFDGSDLRVLSGSIS----ERIVDCIIRLP---VK-------W 490
Query: 173 ELLIKYKKGRTVILTTHYMD----EADLLGDRIA---------IIAAGKLQ 210
E ++K TH +D A LG +I AG L
Sbjct: 491 ETTTQFK-------ATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLD 534
Score = 33.9 bits (77), Expect = 0.049
Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 35/145 (24%)
Query: 132 TLS-GGMQRKLSV-AMAFIGGSR-----TVILDEPTSGV---DPYSRRSIWELLIKY--- 178
TLS G ++ L V +F S+ IL EPT G D + + EL+ K+
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT--TPAELVGKFLGY 67
Query: 179 --------KKGRTVILTTHYMDEAD---LLGDRIAIIAAGKLQCCGSSVFLKNSFARGYY 227
K G+ + + E + L G+ I +AA LQ +++ + Y
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 228 LSLDM---------KSAQLQAEDIG 243
+ M SA +A G
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEG 152
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 49.3 bits (117), Expect = 4e-07
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 7/130 (5%)
Query: 81 QYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGGMQR- 139
A K+ F + ++ N + + + LSGG +
Sbjct: 197 AREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIA 256
Query: 140 -----KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTHYMDE 193
+L++++ G +ILDEPT +D RR + ++ +Y K VIL +H +
Sbjct: 257 LGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 316
Query: 194 ADLLGDRIAI 203
D I I
Sbjct: 317 KDAADHVIRI 326
Score = 29.2 bits (65), Expect = 1.2
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 20 LNVNFYEDQITSFLGHNGAGKTT 42
V F ++ I +G NG+GK++
Sbjct: 17 TVVEF-KEGINLIIGQNGSGKSS 38
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 47.6 bits (114), Expect = 2e-06
Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 31/195 (15%)
Query: 13 GKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRTDMT-- 70
K + + + Q + +G G+GKTT +++LM V G + DIR +
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIR-KIKRS 425
Query: 71 TIRRSLGVCPQYNALFDKLTVEEHMWFYSQL-----------KQVPKDLAQLEISNMIVD 119
++R S+G+ Q LF TV+E++ Y K D + I
Sbjct: 426 SLRSSIGIVLQDTILFST-TVKENL-KYGNPGATDEEIKEAAKLTHSD-------HFIKH 476
Query: 120 LGIPHK-RTSL---ANTLSGGMQRKL-SVAMAFIGGSRTVILDEPTSGVDPYSRRSIWEL 174
L P T L LS G QR+L ++ AF+ + +ILDE TS VD + +SI
Sbjct: 477 L--PEGYETVLTDNGEDLSQG-QRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAA 533
Query: 175 LIKYKKGRTVILTTH 189
+ K +G+T I+ H
Sbjct: 534 MWKLMEGKTSIIIAH 548
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 46.0 bits (110), Expect = 4e-06
Identities = 71/240 (29%), Positives = 110/240 (45%), Gaps = 49/240 (20%)
Query: 1 MA---IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGT 57
MA +QN++K + +N++ +E + F+G +G GK+T + M+ G+ ++SG
Sbjct: 1 MASVQLQNVTKAWGEVV-VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 58 AKIYNHDIRTDMTTIRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMI 117
I + D R +G+ Q AL+ L+V E+M F +L K+ I+ +
Sbjct: 60 LFIGEKRM-NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE----VINQRV 114
Query: 118 VD----LGIPH--KRTSLANTLSGGM-QRKLSVAM---------AFIGGSRTVILDEPTS 161
L + H R A LSGG QR VA+ F+ LDEP S
Sbjct: 115 NQVAEVLQLAHLLDRKPKA--LSGGQRQR---VAIGRTLVAEPSVFL-------LDEPLS 162
Query: 162 GVDPYSR---RS-IWELLIKYKK-GRTVILTTHYMD--EADLLGDRIAIIAAGKLQCCGS 214
+D R R I L +K+ GRT+I TH D EA L D+I ++ AG++ G
Sbjct: 163 NLDAALRVQMRIEISRL---HKRLGRTMIYVTH--DQVEAMTLADKIVVLDAGRVAQVGK 217
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 45.7 bits (109), Expect = 6e-06
Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 29/212 (13%)
Query: 16 AVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DMTTIRR 74
+++ +T+ +G +G+GK+T +S+L+ + +SGT + HDIR + +R
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418
Query: 75 SLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLE-------ISNMIVDLGIPHK-R 126
+G Q LF ++ E++ Y +++ I + P
Sbjct: 419 KIGTVSQEPILFSC-SIAENI-AYGADDPSSVTAEEIQRVAEVANAVAFIRNF--PQGFN 474
Query: 127 TSL---ANTLSGG-MQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGR 182
T + LSGG QR +++A A + + ++LDE TS +D + + E L + GR
Sbjct: 475 TVVGEKGVLLSGGQKQR-IAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGR 533
Query: 183 TVI-----LTTHYMDEADLLGDRIAIIAAGKL 209
TV+ L+T + A + +A++ GK+
Sbjct: 534 TVLVIAHRLST--IKNA----NMVAVLDQGKI 559
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 43.7 bits (104), Expect = 3e-05
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 11 PNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDIRT-DM 69
N + +N++ + + +F+G +G GK+T I+++ V+SG I H+I+
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT 410
Query: 70 TTIRRSLGVCPQYNALF 86
++R +G+ Q N LF
Sbjct: 411 GSLRNQIGLVQQDNILF 427
Score = 40.3 bits (95), Expect = 4e-04
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 132 TLSGGMQR-KLSVAMAFIGGSRTVILDEPTSGVDPYSRRSIWELLIKYKKGRTVILTTH 189
LSGG Q+ +LS+A F+ +ILDE TS +D S I E L K RT ++ H
Sbjct: 477 KLSGG-QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAH 534
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 42.1 bits (99), Expect = 8e-05
Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Query: 72 IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIVDLGIPHKRTSLAN 131
+RR G L +K + + + +E++ +
Sbjct: 220 VRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTID 279
Query: 132 TLSGGMQRKLSVAMAF-----IGGSRT--VILDEPTSGVDPYSRRSIWELLIKYKKGRTV 184
LSGG Q +++++ + G+R +ILDEPT +D R + E+ K K +
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 185 ILTTH 189
I+ TH
Sbjct: 340 IIITH 344
Score = 29.0 bits (65), Expect = 1.3
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 22 VNFYEDQITSFLGHNGAGKTT 42
+ F E I + +G NG+GK++
Sbjct: 21 IKF-EKGIVAIIGENGSGKSS 40
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.004
Identities = 35/272 (12%), Positives = 76/272 (27%), Gaps = 99/272 (36%)
Query: 2 AIQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTT-TISMLMGMLPVSSGTAKI 60
A+ L P + ++G+ G+GKT + + +
Sbjct: 143 ALLELR---PAKNVLIDGVL---------------GSGKTWVALDVCL------------ 172
Query: 61 YNHDIRTDMTT----IRRSLGVCPQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNM 116
++ ++ M + +L C + + L Q+ P ++ + S+
Sbjct: 173 -SYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQK-----LLYQID--PNWTSRSDHSS- 221
Query: 117 IVDLGIPHKRTSLANTLSGGMQRK-----LSVAMAFIGGSRTVILDEPTSGVDPYSRRSI 171
I + S+ L ++ K L ++L + + +
Sbjct: 222 ----NIKLRIHSIQAELRRLLKSKPYENCL------------LVLL------NVQNAK-A 258
Query: 172 WELL-IKYKKGRTVILTTHYMDEADLLGDRIAIIAAGKLQCCGSSVFLKNSFARGYYLSL 230
W + K ++LTT + D L S + SL
Sbjct: 259 WNAFNLSCK----ILLTTRFKQVTDFLS--------AATTTHISLDHHSMTLTPDEVKSL 306
Query: 231 -----DMKSAQL--QAED-----IGLDGDRIR 250
D + L + + + + IR
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Score = 29.1 bits (64), Expect = 1.6
Identities = 29/185 (15%), Positives = 62/185 (33%), Gaps = 53/185 (28%)
Query: 57 TAKIYNH--DIRTDMTTIRRSLGVCPQYNALFDKLTVEEHM-----WFYSQLKQVPKDLA 109
+ + +H + ++ R + VEE + + S +K +
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-- 104
Query: 110 QLEISNMIVDLGIPHKRTSLANTLSGGMQRKLSVAMAFIGGSRTVILDEPTSGVDPYSRR 169
+M+ + I +R L N + K +V SR + PY +
Sbjct: 105 ----PSMMTRMYI-EQRDRLYN--DNQVFAKYNV-------SR----------LQPYLK- 139
Query: 170 SIWELLIKYKKGRTVILTTHYMDEADLLGDRIAIIAAGK----LQCCGSSVFLKNSFARG 225
+ + L++ + + V++ + LG +GK L C S +
Sbjct: 140 -LRQALLELRPAKNVLI--DGV-----LG-------SGKTWVALDVCLSYKVQCKMDFKI 184
Query: 226 YYLSL 230
++L+L
Sbjct: 185 FWLNL 189
Score = 28.3 bits (62), Expect = 3.4
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 24/95 (25%)
Query: 6 LSKRFPNGKLAVNGLNVN-------------FYEDQITSFLGHNGAGKTTTISMLMGMLP 52
L RF K+ + N FY+ I N ++ ++ LP
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD----NDPKYERLVNAILDFLP 553
Query: 53 VSSGTAKIYNHDIRTDMTTIRRSLGVCPQYNALFD 87
KI + I + T + R + + + A+F+
Sbjct: 554 ------KIEENLICSKYTDLLR-IALMAEDEAIFE 581
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 34.5 bits (79), Expect = 0.027
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 100 QLKQVPKDLAQLEISN-----MIVDLGIPHKRTSLANTLSGGMQRKLSVAMAF----IGG 150
L + ++ + +I D GI +R A LSGG + +S+++A +
Sbjct: 246 YLDILTNGRFDIDFDDEKGGFIIKDWGI--ERP--ARGLSGGERALISISLAMSLAEVAS 301
Query: 151 SR--TVILDEPTSGVDPYSRRSIWELLIKYKK-GRTVILTTH 189
R +DE S +D ++ I +L + ++ + ++ TH
Sbjct: 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITH 343
Score = 26.4 bits (58), Expect = 9.9
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 22 VNFYEDQITSFLGHNGAGKTT 42
+ F + IT G NGAGK++
Sbjct: 19 IEF-QSGITVVEGPNGAGKSS 38
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 33.6 bits (78), Expect = 0.058
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 130 ANTLSGG-MQR-KLSVAMAFIGGSRTV-ILDEPTSG 162
A TLSGG QR KL+ + RT+ ILDEPT G
Sbjct: 803 ATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVG 838
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 33.3 bits (77), Expect = 0.076
Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 130 ANTLSGG-MQR-KLSVAMAFIGGSRTV-ILDEPTSG 162
A TLSGG QR KL+ + RTV ILDEPT+G
Sbjct: 861 APTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTG 896
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 33.3 bits (77), Expect = 0.079
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 130 ANTLSGG-MQR-KLSVAMAFIGGSRTV-ILDEPTSG 162
A TLSGG QR KL+ + RT+ ILDEPT+G
Sbjct: 843 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTG 878
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 33.3 bits (77), Expect = 0.080
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 130 ANTLSGG-MQR-KLSVAMAFIGGSRTV-ILDEPTSG 162
A TLSGG QR KL+ + RT+ ILDEPT+G
Sbjct: 541 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTG 576
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 32.5 bits (75), Expect = 0.12
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 130 ANTLSGG-MQR-KLSVAMAFIGGSRTV-ILDEPTSG 162
A LSGG QR KL+ + G TV +LDEPT+G
Sbjct: 728 ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTG 763
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 31.8 bits (71), Expect = 0.21
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 9/99 (9%)
Query: 27 DQITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYN-------HDIRTDMTTIRRSLGVC 79
+ +T+ G NGAGK+TT++ + L N R + GVC
Sbjct: 29 ELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKLKAGVC 88
Query: 80 PQYNALFDKLTVEEHMWFYSQLKQVPKDLAQLEISNMIV 118
Y L + + + +L+Q+ +++I +
Sbjct: 89 --YAVLETVNSRAQRIITGVRLQQIAGRDKKVDIRPFSL 125
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 31.1 bits (71), Expect = 0.30
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 32 FLGHNGAGKTTTI 44
F+G NG+GKTTTI
Sbjct: 134 FVGFNGSGKTTTI 146
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 31.3 bits (71), Expect = 0.33
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 32 FLGHNGAGKTTTI 44
+G NG GKTTTI
Sbjct: 298 MVGVNGVGKTTTI 310
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 30.6 bits (70), Expect = 0.42
Identities = 43/213 (20%), Positives = 82/213 (38%), Gaps = 41/213 (19%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG--MLPVSSGTAKI 60
I++L +G+ + G+N+ + ++ + +G NGAGK+T +L G V G +
Sbjct: 6 IRDLWASI-DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILL 64
Query: 61 YNHDIRTDMTTIRRS-LGV--CPQY--------NALFDKLTV----EEHMWFYSQLKQVP 105
+I +++ R+ G+ QY A F +L + + +V
Sbjct: 65 DGENI-LELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVK 123
Query: 106 KDLAQLEISNMIVDLGIPHKRTSLANTLSGG-------MQRKLSVAMAFIGGSRTVILDE 158
K L L+ + R L SGG +Q + + +LDE
Sbjct: 124 KALELLDWDESYL------SR-YLNEGFSGGEKKRNEILQ------LLVL-EPTYAVLDE 169
Query: 159 PTSGVDPYSRRSIWELLIKYK-KGRTVILTTHY 190
SG+D + + + + + ++ THY
Sbjct: 170 TDSGLDIDALKVVARGVNAMRGPNFGALVITHY 202
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome
partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 30.2 bits (67), Expect = 0.48
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 27 DQITSFLGHNGAGKTTTISMLMGML 51
+ +T+ G NGAGK+TT++ + L
Sbjct: 27 ELVTTLSGGNGAGKSTTMAAFVTAL 51
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 30.2 bits (69), Expect = 0.51
Identities = 46/220 (20%), Positives = 88/220 (40%), Gaps = 51/220 (23%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFLGHNGAGKTTTISMLMG--MLPVSSGTAKI 60
I++L K + GL+++ + ++ + +G NG+GK+T + L G V+ GT +
Sbjct: 23 IKDLHVSV-EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF 81
Query: 61 YNHDIRTDMTTIRRS-LGV--CPQY--------NALFDKLTVEEH-----------MWFY 98
D+ ++ R+ G+ QY N F + + F
Sbjct: 82 KGKDL-LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDF- 139
Query: 99 SQLKQVPKDLAQLEISNMIVDLGIPHKRTSLANTLSGG-------MQRKLSVAMAFIGGS 151
+ + +A L++ ++ R S+ SGG +Q MA +
Sbjct: 140 --QDLMEEKIALLKMPEDLL------TR-SVNVGFSGGEKKRNDILQ------MAVL-EP 183
Query: 152 RTVILDEPTSGVDPYSRRSIWELLIKYK-KGRTVILTTHY 190
ILDE SG+D + + + + + + R+ I+ THY
Sbjct: 184 ELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 223
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein
transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Length = 320
Score = 30.2 bits (69), Expect = 0.63
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 3 IQNLSKRFPNGKLAVNGLNVNFYEDQITSFL--GHNGAGKTTTI 44
+++L + + + ++F E+++ F+ G NG GKTT++
Sbjct: 79 VESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSL 122
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 30.0 bits (68), Expect = 0.79
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 32 FLGHNGAGKTTTI 44
+G NG GKTT++
Sbjct: 162 IVGVNGGGKTTSL 174
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 29.8 bits (68), Expect = 0.82
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 32 FLGHNGAGKTTTI 44
+G NG GKTTTI
Sbjct: 107 VVGVNGVGKTTTI 119
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 29.7 bits (67), Expect = 0.90
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 32 FLGHNGAGKTTTI 44
G GAGKTTT+
Sbjct: 110 LFGSTGAGKTTTL 122
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
translocation, GTP-binding, nucleotide-binding, protein
transport; 1.75A {Arabidopsis thaliana}
Length = 302
Score = 29.4 bits (67), Expect = 0.95
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 32 FLGHNGAGKTTTI 44
+G NG GKTT++
Sbjct: 105 IVGVNGGGKTTSL 117
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 29.4 bits (67), Expect = 0.98
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 32 FLGHNGAGKTTTI 44
+G NG GKTT+
Sbjct: 109 VVGVNGTGKTTSC 121
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 29.1 bits (64), Expect = 1.0
Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 13/88 (14%)
Query: 29 ITSFLGHNGAGKTTTISMLMGMLPVSSGTAKIYNHDI-------------RTDMTTIRRS 75
+ +F +G GKTT + L+ L + H ++
Sbjct: 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 67
Query: 76 LGVCPQYNALFDKLTVEEHMWFYSQLKQ 103
+ Q AL + EE + +
Sbjct: 68 IVASQQRWALMTETPDEEELDLQFLASR 95
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 28.7 bits (65), Expect = 1.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 26 EDQITSFLGHNGAGKTTTISMLMG 49
E I G +G GK++ +S L G
Sbjct: 164 EGFICILAGPSGVGKSSILSRLTG 187
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 28.7 bits (65), Expect = 1.7
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 26 EDQITSFLGHNGAGKTTTISMLMG 49
+D+ T F G +G GK++ ++ +
Sbjct: 172 QDKTTVFAGQSGVGKSSLLNAISP 195
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 28.8 bits (65), Expect = 1.8
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 26 EDQITSFLGHNGAGKTTTISMLMG 49
+I+ F G +G GK++ ++ L+G
Sbjct: 214 TGRISIFAGQSGVGKSSLLNALLG 237
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 28.3 bits (64), Expect = 2.4
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 26 EDQITSFLGHNGAGKTTTISMLM 48
+ +I++ G +G GK++ ++ +
Sbjct: 168 KGKISTMAGLSGVGKSSLLNAIN 190
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 28.0 bits (63), Expect = 2.6
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 22 VNFYEDQITSFLGHNGAGKTT 42
V F ++ I +G NG+GK++
Sbjct: 19 VEF-KEGINLIIGQNGSGKSS 38
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 28.0 bits (63), Expect = 2.9
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 20 LNVNFYEDQITSFLGHNGAGKT 41
+NF + +T G NGAGKT
Sbjct: 20 GTLNF-PEGVTGIYGENGAGKT 40
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 27.3 bits (61), Expect = 3.2
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 22 VNFYEDQITSFLGHNGAGKTT 42
V F ++ I +G NG+GK++
Sbjct: 19 VEF-KEGINLIIGQNGSGKSS 38
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG,
structural genomics structure initiative; 2.20A
{Corynebacterium glutamicum}
Length = 87
Score = 25.8 bits (57), Expect = 5.1
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 9/48 (18%)
Query: 178 YKKGRTVILTTHYMDEADLLGDRIAIIAAG-------KLQCCGSSVFL 218
++ G V+ + + RI AAG K+Q S F
Sbjct: 25 FRDGDAVVFDMSLLSREE--ARRIVDFAAGLCFALHGKMQKIDSVTFA 70
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 26.5 bits (57), Expect = 9.4
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 32 FLGHNGAGKTTTISMLMG--MLPVSSG--TAKI 60
LG GK+T ++ L+G +LP TA +
Sbjct: 74 VLGDMKRGKSTFLNALIGENLLPSDVNPCTAVL 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.395
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,831,367
Number of extensions: 227576
Number of successful extensions: 822
Number of sequences better than 10.0: 1
Number of HSP's gapped: 731
Number of HSP's successfully gapped: 124
Length of query: 251
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 160
Effective length of database: 4,160,982
Effective search space: 665757120
Effective search space used: 665757120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)