BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7368
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G75|A Chain A, Structure Of Paem, A Colicin M-Like Bacteriocin Produced
By Pseudomonas Aeruginosa
pdb|4G76|A Chain A, Structure Of Paem, A Colicin M-Like Bacteriocin Produced
By Pseudomonas Aeruginosa
Length = 297
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 24 AFVIATWEEA--GLGVQWDNWDKKLS--PSDPFSLYDIVWFLY 62
A+V WE+ L QW NW L PS PF Y+ +W ++
Sbjct: 48 AYVNGDWEKPLLALWAQWANWGTTLYGYPSLPFPNYEFIWDIF 90
>pdb|1ESM|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
Length = 316
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 48 PSDPFSLY--DIVWF-LYVDSAIYLILVWYIEAVFPDGVGVFSQP 89
P DP ++ D V F +YVD+ L+ WYI G F+ P
Sbjct: 211 PHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDP 255
>pdb|1SQ5|A Chain A, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|B Chain B, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|C Chain C, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|D Chain D, Crystal Structure Of E. Coli Pantothenate Kinase
Length = 308
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 48 PSDPFSLY--DIVWF-LYVDSAIYLILVWYIEAVFPDGVGVFSQP 89
P DP ++ D V F +YVD+ L+ WYI G F+ P
Sbjct: 203 PHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDP 247
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 28 ATWEEAGLGVQWDNWDKKLSPSDPFSLYD 56
+ W + GL W +SPS PFSL +
Sbjct: 250 SAWPDNGLPTTWRQDHLNISPSTPFSLVE 278
>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
Length = 479
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 6 SANVSFGCF----SANVSFGVGAFVIATWEEAGLGVQWDNWDK 44
SAN++FG + S N+ +G A+ G G W N+++
Sbjct: 128 SANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYNQ 170
>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
Length = 479
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 6 SANVSFGCF----SANVSFGVGAFVIATWEEAGLGVQWDNWDK 44
SAN++FG + S N+ +G A+ G G W N+++
Sbjct: 128 SANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYNQ 170
>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
Length = 479
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 6 SANVSFGCF----SANVSFGVGAFVIATWEEAGLGVQWDNWDK 44
SAN++FG + S N+ +G A+ G G W N+++
Sbjct: 128 SANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYNQ 170
>pdb|3HBU|P Chain P, Prtc Methionine Mutants: M226h Desy
Length = 462
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 6 SANVSFGCF----SANVSFGVGAFVIATWEEAGLGVQWDNWDK 44
SAN++FG + S N+ +G A+ G G W N+++
Sbjct: 111 SANITFGNYTRDASGNLDYGTQAYAYYPGNYQGAGSSWYNYNQ 153
>pdb|1VMJ|A Chain A, Crystal Structure Of A Putative Thiamin Phosphate
Synthase (Tm0723) From Thermotoga Maritima Msb8 At 1.52
A Resolution
Length = 151
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 19 SFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLY 55
+ + A V +E GL ++ W +KL+P P+S Y
Sbjct: 55 AMHITASVFINDDEPGLHHDFEVWLEKLAPEKPYSQY 91
>pdb|3MI6|A Chain A, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|B Chain B, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|C Chain C, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|D Chain D, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
Length = 745
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 59 WFLYVDSAIYLILVWYIEA-VFPDGVGVFSQPLNQ 92
WF + D + W+++ FPDG+ FSQ ++Q
Sbjct: 370 WFGHRDDDTTSLGDWFVDQRKFPDGIEHFSQAVHQ 404
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.487
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,100,120
Number of Sequences: 62578
Number of extensions: 122008
Number of successful extensions: 239
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 16
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)