BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7368
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R420|ABCA3_MOUSE ATP-binding cassette sub-family A member 3 OS=Mus musculus GN=Abca3
PE=2 SV=3
Length = 1704
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 11 FGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLI 70
C +NV+ +GA +I +E G G+QW + ++ D F ++ L +DSA+Y +
Sbjct: 406 LSCLLSNVAMAMGAQLIGKFEAKGTGIQWRDLLNPVNVDDNFCFGQVLGMLLLDSALYGL 465
Query: 71 LVWYIEAVFPDGVGVFSQP 89
+ WY+EAVFP GV QP
Sbjct: 466 VTWYVEAVFPGQFGV-PQP 483
>sp|Q99758|ABCA3_HUMAN ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3
PE=1 SV=2
Length = 1704
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 13 CFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILV 72
C +NV+ +GA +I +E G+G+QW + ++ D F ++ L +DS +Y ++
Sbjct: 408 CLLSNVAMAMGAQLIGKFEAKGMGIQWRDLLSPVNVDDDFCFGQVLGMLLLDSVLYGLVT 467
Query: 73 WYIEAVFPDGVGVFSQP 89
WY+EAVFP GV QP
Sbjct: 468 WYMEAVFPGQFGV-PQP 483
>sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2
PE=1 SV=3
Length = 2435
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 16 ANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYI 75
+ +FG+G+ A +E AG+G+QW + + D F+L V L VD+ +Y IL WYI
Sbjct: 854 STTAFGLGSKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMVDAVVYGILTWYI 913
Query: 76 EAVFPDGVGV 85
EAV P G+
Sbjct: 914 EAVHPGMYGL 923
>sp|P41233|ABCA1_MOUSE ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1
PE=1 SV=4
Length = 2261
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 11 FGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLI 70
F + V+FG G A +EE G+GVQWDN + D F+L V + D+ +Y +
Sbjct: 778 FASLLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTAVSMMLFDTFLYGV 837
Query: 71 LVWYIEAVFPDGVGV 85
+ WYIEAVFP G+
Sbjct: 838 MTWYIEAVFPGQYGI 852
>sp|Q9ESR9|ABCA2_RAT ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus
GN=Abca2 PE=1 SV=1
Length = 2434
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 16 ANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYI 75
+ +FG+G+ A +E AG+G+QW + + D F+L V L VD+ +Y +L WYI
Sbjct: 854 STTAFGLGSKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMVDTVVYGVLTWYI 913
Query: 76 EAVFPDGVGV 85
EAV P G+
Sbjct: 914 EAVHPGMYGL 923
>sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1
PE=1 SV=3
Length = 2261
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 11 FGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLI 70
F + V+FG G A +EE G+GVQWDN + D F+L V + D+ +Y +
Sbjct: 778 FASLLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTSVSMMLFDTFLYGV 837
Query: 71 LVWYIEAVFPDGVGV 85
+ WYIEAVFP G+
Sbjct: 838 MTWYIEAVFPGQYGI 852
>sp|O35600|ABCA4_MOUSE Retinal-specific ATP-binding cassette transporter OS=Mus musculus
GN=Abca4 PE=2 SV=1
Length = 2310
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 16 ANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYI 75
++V+FG G + +EE GLG+QW N K D FS + + +D+A+Y +L WY+
Sbjct: 798 SSVAFGFGTEYLVRFEEQGLGLQWSNIGKSPLEGDEFSFLLSMKMMLLDAALYGLLAWYL 857
Query: 76 EAVFPDGVGVFSQPL 90
+ VFP G + PL
Sbjct: 858 DQVFP---GDYGTPL 869
>sp|P78363|ABCA4_HUMAN Retinal-specific ATP-binding cassette transporter OS=Homo sapiens
GN=ABCA4 PE=1 SV=3
Length = 2273
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 18 VSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEA 77
V+FG G + +EE GLG+QW N + D FS + + +D+A+Y +L WY++
Sbjct: 800 VAFGFGTEYLVRFEEQGLGLQWSNIGNSPTEGDEFSFLLSMQMMLLDAAVYGLLAWYLDQ 859
Query: 78 VFPDGVGVFSQPL 90
VFP G + PL
Sbjct: 860 VFP---GDYGTPL 869
>sp|Q91V24|ABCA7_MOUSE ATP-binding cassette sub-family A member 7 OS=Mus musculus GN=Abca7
PE=1 SV=1
Length = 2159
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 18 VSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEA 77
V+FG G +A EE G G QW N D FSL + FL +D+ IY + +WY+EA
Sbjct: 692 VAFGFGCESLALLEEQGDGAQWHNLGTG-PAEDVFSLAQVSAFLLLDAVIYGLALWYLEA 750
Query: 78 VFPDGVGVFSQPLNQP 93
V P G+ +P N P
Sbjct: 751 VCPGQYGI-PEPWNFP 765
>sp|Q7TNJ2|ABCA7_RAT ATP-binding cassette sub-family A member 7 OS=Rattus norvegicus
GN=Abca7 PE=1 SV=1
Length = 2170
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 18 VSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEA 77
V+FG G +A EE G G QW N D FSL + FL +D+ IY + +WY+EA
Sbjct: 693 VAFGFGCESLALLEEQGDGAQWHNLGTG-PAEDVFSLAQVSAFLLLDAVIYGLALWYLEA 751
Query: 78 VFPDGVGVFSQPLNQP 93
V P G+ +P N P
Sbjct: 752 VCPGQYGI-PEPWNFP 766
>sp|Q8IZY2|ABCA7_HUMAN ATP-binding cassette sub-family A member 7 OS=Homo sapiens GN=ABCA7
PE=1 SV=3
Length = 2146
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 18 VSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEA 77
V+FG G +A EE G G QW N + + +D FSL + L +D+A+Y + WY+EA
Sbjct: 695 VAFGFGCESLALLEEQGEGAQWHNVGTRPT-ADVFSLAQVSGLLLLDAALYGLATWYLEA 753
Query: 78 VFPDGVGVFSQPLNQP 93
V P G+ +P N P
Sbjct: 754 VCPGQYGI-PEPWNFP 768
>sp|Q86UK0|ABCAC_HUMAN ATP-binding cassette sub-family A member 12 OS=Homo sapiens GN=ABCA12
PE=1 SV=3
Length = 2595
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 19 SFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEAV 78
+F + IA +EE G+G+QW+N D S + + DS IY ++ WY+ V
Sbjct: 1215 AFSYASQYIARYEEQGIGLQWENMYTSPVQDDTTSFGWLCCLILADSFIYFLIAWYVRNV 1274
Query: 79 FPDGVGV 85
FP G+
Sbjct: 1275 FPGTYGM 1281
>sp|Q86UQ4|ABCAD_HUMAN ATP-binding cassette sub-family A member 13 OS=Homo sapiens GN=ABCA13
PE=2 SV=3
Length = 5058
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 8 NVSFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAI 67
N +F C + +FG G F I E G+QW+N + L + + W + DS++
Sbjct: 3707 NQTFLCLLSTTAFGQGVFFITFLEGQETGIQWNNMYQALEQGG-MTFGWVCWMILFDSSL 3765
Query: 68 YLILVWYIEAVFPDGVGV 85
Y + WY+ + P G+
Sbjct: 3766 YFLCGWYLSNLIPGTFGL 3783
>sp|P41234|ABCA2_MOUSE ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2
PE=1 SV=4
Length = 2434
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 30 WEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEAVFPDGVGV 85
W+E +QW + + D F+L V L VD+ +Y +L WYIEAV P G+
Sbjct: 869 WQEWA-SIQWHTFSQSPVEGDDFNLLLAVTMLMVDTVVYGVLTWYIEAVHPGMYGL 923
>sp|Q5SSE9|ABCAD_MOUSE ATP-binding cassette sub-family A member 13 OS=Mus musculus GN=Abca13
PE=2 SV=1
Length = 5034
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 13 CFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILV 72
C + +FG G F I E G+QW N + P + + W + D+ +Y +
Sbjct: 3680 CLLSTTAFGQGVFFITFLEGQEEGIQWGNMYRAPEPGG-MTFGWVCWMILFDAILYFLGG 3738
Query: 73 WYIEAVFPDGVGV 85
WY + P G+
Sbjct: 3739 WYFSNLVPGTFGL 3751
>sp|Q54DT1|ABCA9_DICDI ABC transporter A family member 9 OS=Dictyostelium discoideum
GN=abcA9 PE=3 SV=1
Length = 845
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 52 FSLYDIVWFLYVDSAIYLILVWYIEAVFPDGVGVFSQPL 90
F + I+++LY+D+ +YL++ Y++ V P GV S PL
Sbjct: 414 FEMSKIIFWLYIDAIVYLLIALYLDQVLPREFGVPSHPL 452
>sp|Q8T6J0|ABCA7_DICDI ABC transporter A family member 7 OS=Dictyostelium discoideum
GN=abcA7 PE=3 SV=1
Length = 839
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 52 FSLYDIVWFLYVDSAIYLILVWYIEAVFPDGVGVFSQPL 90
F L I+++L++D+ +YL L Y++ V P GV S PL
Sbjct: 414 FELSRILFWLFIDTIVYLTLAVYLDKVLPREFGVPSHPL 452
>sp|Q84M24|AB1A_ARATH ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1
PE=2 SV=2
Length = 1882
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 19 SFGVGAFVIATWEEAGLGVQWDN-WDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEA 77
+F +G+ A +E A +G++W N W S S + + + +DS +Y L Y++
Sbjct: 422 AFALGSINFADYERAHVGLRWSNIW----RASSGVSFFVCLLMMLLDSILYCALGLYLDK 477
Query: 78 VFPDGVGV 85
V P GV
Sbjct: 478 VLPRENGV 485
>sp|Q9JK23|PSMG1_MOUSE Proteasome assembly chaperone 1 OS=Mus musculus GN=Psmg1 PE=1 SV=1
Length = 289
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 16 ANVSFGVGAFVI--ATWEEAGLGVQWDNWDK-----KLSPSDPFSLYDIVWFLYVDSAIY 68
+N + + AFV+ WEE G W+ W + +LSP+D F ++ + L D +++
Sbjct: 78 SNATAFLSAFVMNSGVWEEVGCAKLWNEWCRTTDTVRLSPTDVFCVF---YQLKSDPSVF 134
Query: 69 L 69
L
Sbjct: 135 L 135
>sp|Q4WRZ5|MNS1B_ASPFU Probable mannosyl-oligosaccharide alpha-1,2-mannosidase 1B
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=mns1B PE=3 SV=1
Length = 493
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 34 GLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEAVF 79
G+G + WD+K P+D LY+ F YV S Y++ IE+ +
Sbjct: 363 GIGPESFGWDEKSVPADQKELYERAGF-YVQSGAYILRPEVIESFY 407
>sp|B0XMT4|MNS1B_ASPFC Probable mannosyl-oligosaccharide alpha-1,2-mannosidase 1B
OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 /
FGSC A1163) GN=mns1B PE=3 SV=1
Length = 493
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 34 GLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEAVF 79
G+G + WD+K P+D LY+ F YV S Y++ IE+ +
Sbjct: 363 GIGPESFGWDEKSVPADQKELYERAGF-YVQSGAYILRPEVIESFY 407
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.142 0.487
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,926,798
Number of Sequences: 539616
Number of extensions: 1402569
Number of successful extensions: 3124
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3099
Number of HSP's gapped (non-prelim): 29
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)