Query psy7368
Match_columns 93
No_of_seqs 102 out of 547
Neff 7.5
Searched_HMMs 29240
Date Sat Aug 17 00:56:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dlq_I Interleukin-22; cytokin 71.8 3.9 0.00013 26.3 3.3 23 65-87 62-84 (151)
2 1n1f_A Interleukin-19; cytokin 43.7 7.7 0.00026 25.1 1.0 20 66-86 59-78 (159)
3 4doh_A Interleukin-20; IL10 fa 39.8 17 0.00058 23.2 2.1 17 65-81 58-74 (153)
4 2ilk_A Interleukin-10; cytokin 37.4 14 0.00048 23.8 1.5 20 65-85 63-82 (160)
5 1lqs_L Interleukin-10-like pro 34.0 17 0.00057 23.4 1.4 16 65-80 64-79 (157)
6 2klq_A CBD, P105MCM, DNA repli 24.5 33 0.0011 20.7 1.5 10 70-79 41-50 (114)
7 1gk7_A Vimentin; intermediate 22.2 40 0.0014 16.5 1.3 10 71-80 15-24 (39)
8 3mko_A Glycoprotein C; trimeri 20.0 37 0.0013 21.1 1.0 19 72-91 74-92 (137)
9 2p06_A Hypothetical protein AF 15.1 1.2E+02 0.004 17.7 2.3 25 64-91 29-54 (114)
10 1btq_A BAND 3 anion transport 14.5 47 0.0016 14.9 0.4 13 9-21 9-21 (26)
No 1
>3dlq_I Interleukin-22; cytokine-receptor complex, fibronectin-III, cytokine, glycoprotein, polymorphism, secreted, membrane; 1.90A {Homo sapiens} SCOP: a.26.1.3 PDB: 1m4r_A 3g9v_B 3q1s_I 1ykb_A* 3dgc_L*
Probab=71.77 E-value=3.9 Score=26.25 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCC
Q psy7368 65 SAIYLILVWYIEAVFPDGVGVFS 87 (93)
Q Consensus 65 ~~ly~ll~wYld~V~Pg~~Gv~~ 87 (93)
+++.-+|-.|+|.|+|..+...+
T Consensus 62 ~~l~~lL~FYL~~Vf~~~~~~~~ 84 (151)
T 3dlq_I 62 YLMKQVLNFTLEEVLFPQSDRFQ 84 (151)
T ss_dssp HHHHHHHHHHHHHTTTTTTTSST
T ss_pred hHHHHHHHHHHHHHhhHhhhccC
Confidence 56778899999999988877654
No 2
>1n1f_A Interleukin-19; cytokine, four helix bundle, immune system; HET: NAG; 1.95A {Homo sapiens} SCOP: a.26.1.3
Probab=43.72 E-value=7.7 Score=25.05 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCC
Q psy7368 66 AIYLILVWYIEAVFPDGVGVF 86 (93)
Q Consensus 66 ~ly~ll~wYld~V~Pg~~Gv~ 86 (93)
++--+|-.|+|.|+| .|..+
T Consensus 59 ~~~~lL~FYLe~Vf~-~~~~~ 78 (159)
T 1n1f_A 59 VTKNLLAFYVDRVFK-DHQEP 78 (159)
T ss_dssp HHHHHHHHHHHTHHH-HCCCC
T ss_pred HHHHHHHHHHHHHHH-hhccC
Confidence 456788999999998 66554
No 3
>4doh_A Interleukin-20; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Probab=39.83 E-value=17 Score=23.18 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhcCC
Q psy7368 65 SAIYLILVWYIEAVFPD 81 (93)
Q Consensus 65 ~~ly~ll~wYld~V~Pg 81 (93)
+++.-+|-.|+|.|+|.
T Consensus 58 ~~~~~lL~FYL~~Vf~~ 74 (153)
T 4doh_A 58 CLLRHLLRLYLDRVFKN 74 (153)
T ss_dssp HHHHHHHHHHHHHTGGG
T ss_pred hHHHHHHHHHHHHhhhc
Confidence 56778999999999974
No 4
>2ilk_A Interleukin-10; cytokine; 1.60A {Homo sapiens} SCOP: a.26.1.3 PDB: 1j7v_L 1y6k_L 2h24_A 1inr_A 1ilk_A 1lk3_A 1y6n_L 1vlk_A 1y6m_L
Probab=37.44 E-value=14 Score=23.81 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCC
Q psy7368 65 SAIYLILVWYIEAVFPDGVGV 85 (93)
Q Consensus 65 ~~ly~ll~wYld~V~Pg~~Gv 85 (93)
.++.-+|..|+|.|+| .+-.
T Consensus 63 ~~l~~lL~FYLe~Vf~-~~~~ 82 (160)
T 2ilk_A 63 QALSEMIQFYLEEVMP-QAEN 82 (160)
T ss_dssp HHHHHHHHHHHHHTHH-HHHT
T ss_pred HHHHHHHHHHHHHHhh-hhcc
Confidence 4578899999999998 4433
No 5
>1lqs_L Interleukin-10-like protein; helix bundle, receptor complex, molecular recognition, structure mimic, immune system; HET: NAG; 2.70A {Human herpesvirus 5} SCOP: a.26.1.3
Probab=34.05 E-value=17 Score=23.39 Aligned_cols=16 Identities=44% Similarity=0.748 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhcC
Q psy7368 65 SAIYLILVWYIEAVFP 80 (93)
Q Consensus 65 ~~ly~ll~wYld~V~P 80 (93)
+++.-+|-.|+|.|+|
T Consensus 64 ~~l~~lL~FYLe~V~~ 79 (157)
T 1lqs_L 64 SVMDWLLRRYLEIVFP 79 (157)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4567889999999998
No 6
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=24.53 E-value=33 Score=20.68 Aligned_cols=10 Identities=20% Similarity=0.919 Sum_probs=7.9
Q ss_pred HHHHHHHHhc
Q psy7368 70 ILVWYIEAVF 79 (93)
Q Consensus 70 ll~wYld~V~ 79 (93)
++.|||+++-
T Consensus 41 Lv~WYLeq~e 50 (114)
T 2klq_A 41 LVNWYLKEIE 50 (114)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5789999864
No 7
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=22.21 E-value=40 Score=16.49 Aligned_cols=10 Identities=30% Similarity=0.301 Sum_probs=7.6
Q ss_pred HHHHHHHhcC
Q psy7368 71 LVWYIEAVFP 80 (93)
Q Consensus 71 l~wYld~V~P 80 (93)
+|-|+|+|..
T Consensus 15 lAsyidkVR~ 24 (39)
T 1gk7_A 15 FANYIDKVRF 24 (39)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5779998863
No 8
>3mko_A Glycoprotein C; trimeric coiled-coil, viral protein; 1.80A {Lymphocytic choriomeningitis virus}
Probab=19.98 E-value=37 Score=21.14 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=10.3
Q ss_pred HHHHHHhcCCCCCCCCCCCC
Q psy7368 72 VWYIEAVFPDGVGVFSQPLN 91 (93)
Q Consensus 72 ~wYld~V~Pg~~Gv~~~pw~ 91 (93)
.||++.-.-|+.-.|| .|.
T Consensus 74 FWYvNhT~~g~hSLPk-CWl 92 (137)
T 3mko_A 74 FWYLEHAKTGETSVPK-CWL 92 (137)
T ss_dssp HHHHHHC-------CC-SBC
T ss_pred eEEecccccCcccCCc-eeE
Confidence 6999999999999998 884
No 9
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=15.07 E-value=1.2e+02 Score=17.70 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhc-CCCCCCCCCCCC
Q psy7368 64 DSAIYLILVWYIEAVF-PDGVGVFSQPLN 91 (93)
Q Consensus 64 d~~ly~ll~wYld~V~-Pg~~Gv~~~pw~ 91 (93)
.-++--.-+-|..+|- ||. .|+ |||
T Consensus 29 ekflremhakymkrvsrpgn--tpr-pwf 54 (114)
T 2p06_A 29 EKFLREMHAKYMKRVSRPGN--TPR-PWF 54 (114)
T ss_dssp HHHHHHHHHHHHHHHTSTTC--CSC-HHH
T ss_pred HHHHHHHHHHHHHHccCCCC--CCC-Ccc
Confidence 3445566788988884 554 666 986
No 10
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=14.53 E-value=47 Score=14.88 Aligned_cols=13 Identities=31% Similarity=0.810 Sum_probs=9.3
Q ss_pred HHHHhhccHHHHH
Q psy7368 9 VSFGCFSANVSFG 21 (93)
Q Consensus 9 k~~~sL~~~~a~~ 21 (93)
...+||.|.++|+
T Consensus 9 lyFa~l~paIaFG 21 (26)
T 1btq_A 9 IYFAALSPAITFG 21 (26)
T ss_pred HHHHHHcchhccc
Confidence 3467888888776
Done!