RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7368
         (93 letters)



>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter.  This
           model describes the photoreceptor protein (rim protein)
           in eukaryotes. It is the member of ABC transporter
           superfamily. Rim protein is a membrane glycoprotein
           which is localized in the photoreceptor outer segment
           discs. Mutation/s in its genetic loci is implicated in
           the recessive Stargardt's disease [Transport and binding
           proteins, Other].
          Length = 2272

 Score = 56.2 bits (135), Expect = 9e-11
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 16  ANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYI 75
           + V+FG G   +  +EE GLG+QW N        D FS    +  + +D+A+Y +L WY+
Sbjct: 798 SPVAFGFGTEYLVRFEEQGLGLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLAWYL 857

Query: 76  EAVFPDGVGVFSQPL 90
           + VFP   G +  PL
Sbjct: 858 DQVFP---GDYGTPL 869


>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
           ion transport and metabolism].
          Length = 304

 Score = 27.6 bits (62), Expect = 0.91
 Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 4/57 (7%)

Query: 18  VSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWY 74
            S  V   + A    AG  +  +   + +SP         +    +   I   L  Y
Sbjct: 84  ASLIVSILIFA----AGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRY 136


>gnl|CDD|238983 cd02025, PanK, Pantothenate kinase (PanK) catalyzes the
           phosphorylation of pantothenic acid to form
           4'-phosphopantothenic, which is the first of five steps
           in coenzyme A (CoA) biosynthetic pathway. The reaction
           carried out by this enzyme is a key regulatory point in
           CoA biosynthesis.
          Length = 220

 Score = 26.1 bits (58), Expect = 2.4
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 5/46 (10%)

Query: 34  GLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEAVF 79
           GL V     + +L  SD    +D    +YVD+    I  WYI+   
Sbjct: 111 GLNVLQTGQNPRLFVSD---FFDFS--IYVDADEDDIEKWYIKRFL 151


>gnl|CDD|179615 PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional.
          Length = 274

 Score = 25.7 bits (57), Expect = 3.5
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 4/26 (15%)

Query: 64  DSAIYLILVWYIE----AVFPDGVGV 85
           D A++   +W +      VFPDGVG+
Sbjct: 157 DEAVFTRTLWEMSTECLVVFPDGVGI 182


>gnl|CDD|218788 pfam05872, DUF853, Bacterial protein of unknown function (DUF853). 
           This family consists of several bacterial proteins of
           unknown function. BMEI1370 is thought to be an ATPase.
          Length = 504

 Score = 25.1 bits (55), Expect = 6.0
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 3   QCFSANVSFGCFSANVSFGVGAFVIATWEEAG 34
             F  N  F    A    G G  +++T +E G
Sbjct: 337 DTFRPNPDFDTEEAITELGTGEALVSTLDEKG 368


>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase.  Members
          of this protein family are salicylate 1-monooxygenase,
          also called salicylate hydroxylase. This enzyme
          converts salicylate to catechol, which is a common
          intermediate in the degradation of a number of aromatic
          compounds (phenol, toluene, benzoate, etc.). The gene
          for this protein may occur in catechol degradation
          genes, such as those of the meta-cleavage pathway.
          Length = 414

 Score = 25.2 bits (55), Expect = 6.8
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 3  QCFSANVSFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWF 60
          Q F A  +FG   A VSFG  A  +      GLG  +     +++ S P    DI WF
Sbjct: 28 QLFEAAPAFGEVGAGVSFGANA--VRAIVGLGLGEAY----TQVADSTPAPWQDI-WF 78


>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase. 
            Members of this protein family are
            L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
            product of the LYS2 gene. It is also called
            alpha-aminoadipate reductase. In fungi, lysine is
            synthesized via aminoadipate. Currently, all members of
            this family are fungal.
          Length = 1389

 Score = 24.6 bits (54), Expect = 9.7
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 16/61 (26%)

Query: 15   SANVSFGVGAFVIATWEEAGL----------GVQWDNWDKKLSP-----SDP-FSLYDIV 58
             +N +F V A V A  EEAGL          G+  + W  ++       S   F L D  
Sbjct: 995  RSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGLSDEK 1054

Query: 59   W 59
            W
Sbjct: 1055 W 1055


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.142    0.487 

Gapped
Lambda     K      H
   0.267   0.0673    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,923,912
Number of extensions: 411683
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 460
Number of HSP's successfully gapped: 17
Length of query: 93
Length of database: 10,937,602
Length adjustment: 60
Effective length of query: 33
Effective length of database: 8,276,362
Effective search space: 273119946
Effective search space used: 273119946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)