RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7368
         (93 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.5 bits (63), Expect = 0.28
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 39   WDNWDKKLSPSDPFSLYDIV 58
            W+  D     +  FS+ DIV
Sbjct: 1646 WNRADNHFKDTYGFSILDIV 1665


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.7 bits (63), Expect = 0.30
 Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 33/67 (49%)

Query: 39  WDNW-----DKK----------LSPSDPFSLYDIVWFLYVDSAIYLILVWYIEAVFPDGV 83
           WDNW     DK           L P++   ++D            L       +VFP   
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-----------RL-------SVFPPSA 385

Query: 84  GVFSQPL 90
            + +  L
Sbjct: 386 HIPTILL 392


>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
           kinase, STRU genomics, joint center for structural
           genomics, JCSG; 1.95A {Silicibacter SP}
          Length = 208

 Score = 24.3 bits (53), Expect = 7.2
 Identities = 4/23 (17%), Positives = 10/23 (43%), Gaps = 2/23 (8%)

Query: 54  LYDIVWFLYVDSAIYLILVWYIE 76
           ++D+   L V  A   +    ++
Sbjct: 147 IWDVSIRLEVPMAD--LEARLVQ 167


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.142    0.487 

Gapped
Lambda     K      H
   0.267   0.0482    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,537,474
Number of extensions: 79229
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 8
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.0 bits)