RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7368
         (93 letters)



>d1e9ya2 d.8.1.1 (A:1-105) Urease, gamma-subunit {Helicobacter
          pylori [TaxId: 210]}
          Length = 105

 Score = 24.5 bits (54), Expect = 1.8
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query: 75 IEAVFPDG 82
          IEA+FPDG
Sbjct: 83 IEAMFPDG 90


>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
          [TaxId: 28901]}
          Length = 643

 Score = 25.0 bits (54), Expect = 1.9
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 30 WEEAGLGVQWD-NWDKKLSPSDPFSLYDIVWF 60
          W E G  + W   + K  + S       I W+
Sbjct: 35 WGEQGKILDWITPYQKVKNTSFAPGNVSIKWY 66


>d4ubpa_ d.8.1.1 (A:) Urease, gamma-subunit {Bacillus pasteurii
          [TaxId: 1474]}
          Length = 100

 Score = 24.1 bits (53), Expect = 2.0
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 75 IEAVFPDG 82
           EA FPDG
Sbjct: 82 AEATFPDG 89


>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
          ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
          [TaxId: 2234]}
          Length = 240

 Score = 23.0 bits (49), Expect = 7.7
 Identities = 9/28 (32%), Positives = 10/28 (35%)

Query: 1  MFQCFSANVSFGCFSANVSFGVGAFVIA 28
          MF    A    G F  NV F +G     
Sbjct: 1  MFLKVRAEKRLGNFRLNVDFEMGRDYCV 28


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.142    0.487 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 386,742
Number of extensions: 16029
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 6
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (21.8 bits)