Query psy7369
Match_columns 265
No_of_seqs 171 out of 755
Neff 7.3
Searched_HMMs 46136
Date Sat Aug 17 00:56:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01257 rim_protein retinal- 100.0 3.1E-49 6.8E-54 422.5 21.7 239 5-253 519-771 (2272)
2 PF12698 ABC2_membrane_3: ABC- 99.2 5.6E-12 1.2E-16 113.2 2.9 154 91-252 114-278 (344)
3 TIGR01257 rim_protein retinal- 99.0 6.5E-09 1.4E-13 114.1 14.1 151 92-243 1629-1791(2272)
4 KOG0059|consensus 98.9 5.1E-08 1.1E-12 100.8 16.7 154 90-250 256-413 (885)
5 TIGR01247 drrB daunorubicin re 95.8 0.1 2.2E-06 45.3 10.1 66 137-202 51-116 (236)
6 TIGR03518 ABC_perm_GldF glidin 95.6 0.17 3.6E-06 44.7 10.8 44 152-195 69-112 (240)
7 TIGR00025 Mtu_efflux ABC trans 95.4 0.52 1.1E-05 40.8 13.2 62 137-198 40-101 (232)
8 COG1668 NatB ABC-type Na+ effl 94.9 0.4 8.6E-06 45.7 11.9 65 137-201 191-255 (407)
9 TIGR01248 drrC daunorubicin re 94.3 1.1 2.3E-05 36.6 11.6 50 152-201 8-57 (152)
10 TIGR03861 phenyl_ABC_PedC alco 93.1 2.2 4.7E-05 37.4 12.2 66 136-201 62-127 (253)
11 TIGR01291 nodJ ABC-2 type tran 92.7 2.9 6.3E-05 36.9 12.5 98 134-234 58-157 (253)
12 COG0842 ABC-type multidrug tra 91.9 3.6 7.8E-05 35.5 12.1 97 136-234 90-187 (286)
13 PF12679 ABC2_membrane_2: ABC- 89.0 1.8 3.9E-05 37.9 7.6 43 148-190 82-124 (277)
14 TIGR03062 pip_yhgE_Cterm YhgE/ 87.2 8.2 0.00018 32.6 10.3 96 136-239 25-123 (208)
15 TIGR00955 3a01204 The Eye Pigm 86.1 7.5 0.00016 39.0 10.8 95 151-250 410-510 (617)
16 PF12730 ABC2_membrane_4: ABC- 85.1 12 0.00027 30.6 10.2 47 152-198 66-112 (232)
17 PF03379 CcmB: CcmB protein; 84.6 10 0.00023 32.8 9.7 54 148-201 60-113 (215)
18 PLN03211 ABC transporter G-25; 83.8 6.9 0.00015 39.7 9.4 96 151-250 456-556 (659)
19 PF01061 ABC2_membrane: ABC-2 81.0 0.11 2.3E-06 43.3 -4.1 93 155-250 72-168 (210)
20 TIGR00956 3a01205 Pleiotropic 76.0 17 0.00036 40.3 9.8 93 155-250 1150-1254(1394)
21 PLN03140 ABC transporter G fam 73.3 30 0.00065 38.6 10.9 91 156-250 1270-1365(1470)
22 PF13346 ABC2_membrane_5: ABC- 71.3 57 0.0012 26.9 11.7 51 152-202 52-102 (206)
23 PF12051 DUF3533: Protein of u 71.3 92 0.002 29.3 12.5 23 13-35 80-102 (382)
24 TIGR01190 ccmB heme exporter p 70.8 71 0.0015 27.7 11.0 63 139-201 48-110 (211)
25 KOG0061|consensus 65.8 1.2E+02 0.0026 30.6 12.7 95 152-250 408-507 (613)
26 COG1277 NosY ABC-type transpor 65.0 44 0.00095 29.3 8.5 94 152-247 79-182 (278)
27 PF02687 FtsX: FtsX-like perme 64.9 54 0.0012 24.2 9.6 49 147-196 13-61 (121)
28 cd06261 TM_PBP2 Transmembrane 63.7 43 0.00094 27.3 7.8 55 146-200 85-139 (190)
29 PF11455 DUF3018: Protein of 59.7 3.5 7.6E-05 29.0 0.3 24 157-180 1-24 (65)
30 PRK11026 ftsX cell division AB 57.9 1.5E+02 0.0033 27.1 10.9 55 137-192 185-239 (309)
31 PF11298 DUF3099: Protein of u 56.9 19 0.00041 26.0 3.7 32 156-187 9-40 (73)
32 PRK15066 inner membrane transp 54.4 1.5E+02 0.0032 25.9 12.1 46 151-196 79-124 (257)
33 PLN03140 ABC transporter G fam 54.0 67 0.0014 36.0 9.1 75 173-250 608-687 (1470)
34 COG4591 LolE ABC-type transpor 49.9 1.6E+02 0.0034 28.3 9.9 52 145-197 283-334 (408)
35 PF00528 BPD_transp_1: Binding 48.4 69 0.0015 25.6 6.5 55 144-198 63-117 (185)
36 PRK15111 antimicrobial peptide 40.8 2.1E+02 0.0046 25.8 8.9 42 149-190 173-215 (296)
37 PF07988 LMSTEN: LMSTEN motif; 40.7 16 0.00035 23.6 1.1 10 158-167 24-33 (48)
38 TIGR02790 nickel_nikC nickel A 39.8 1.8E+02 0.004 25.5 8.3 43 149-191 139-182 (258)
39 TIGR01097 PhnE phosphonate ABC 37.5 1.5E+02 0.0033 25.7 7.3 35 146-180 138-172 (250)
40 PRK11365 ssuC alkanesulfonate 37.3 2E+02 0.0043 25.4 8.1 50 146-195 136-185 (263)
41 PRK10913 dipeptide transporter 37.2 2.4E+02 0.0051 25.6 8.7 41 148-188 175-216 (300)
42 TIGR00956 3a01205 Pleiotropic 37.1 1.5E+02 0.0033 33.1 8.5 89 157-250 476-570 (1394)
43 PRK10417 nikC nickel transport 35.1 2.6E+02 0.0056 24.8 8.5 44 149-192 144-188 (272)
44 PRK10971 sulfate/thiosulfate t 34.4 2.7E+02 0.0058 24.6 8.5 53 149-201 155-207 (277)
45 TIGR01581 Mo_ABC_porter NifC-l 32.6 2.9E+02 0.0063 23.3 8.1 58 146-203 115-172 (225)
46 PRK10782 DL-methionine transpo 31.1 2.5E+02 0.0054 23.6 7.5 47 148-194 103-149 (217)
47 TIGR00439 ftsX putative protei 31.0 4.1E+02 0.009 24.2 10.9 42 136-178 184-225 (309)
48 PF11677 DUF3273: Protein of u 29.9 4.2E+02 0.0091 23.9 11.1 80 107-189 46-128 (265)
49 TIGR01183 ntrB nitrate ABC tra 29.8 3.5E+02 0.0075 22.9 8.4 49 147-195 94-142 (202)
50 PF13858 DUF4199: Protein of u 29.5 2.2E+02 0.0048 22.8 6.6 26 177-202 136-161 (163)
51 PF11026 DUF2721: Protein of u 29.3 2.6E+02 0.0056 22.1 6.7 53 170-226 52-104 (130)
52 PRK11146 outer membrane-specif 28.6 4.9E+02 0.011 24.3 10.6 42 149-191 285-326 (412)
53 PRK15082 glutathione ABC trans 28.5 3.6E+02 0.0078 24.4 8.4 42 148-189 176-218 (301)
54 PRK10160 taurine transporter s 28.1 3.1E+02 0.0067 24.4 7.8 50 147-196 155-204 (275)
55 PF03904 DUF334: Domain of unk 27.9 4.2E+02 0.0092 23.3 8.7 77 153-231 122-212 (230)
56 KOG0500|consensus 27.7 1.9E+02 0.0042 28.5 6.6 67 118-184 200-274 (536)
57 PRK09881 D-ala-D-ala transport 27.3 2E+02 0.0044 26.0 6.5 37 148-184 170-207 (296)
58 COG3559 TnrB3 Putative exporte 27.2 6.1E+02 0.013 24.9 10.3 63 136-200 352-414 (536)
59 TIGR02213 lolE_release lipopro 26.5 5.3E+02 0.012 24.0 10.6 42 150-192 285-326 (411)
60 COG2991 Uncharacterized protei 25.2 87 0.0019 22.5 2.8 33 230-262 16-50 (77)
61 COG1422 Predicted membrane pro 24.6 1.8E+02 0.0039 25.1 5.2 51 136-186 122-183 (201)
62 PF06143 Baculo_11_kDa: Baculo 24.4 3E+02 0.0065 20.4 6.6 44 129-172 36-82 (84)
63 PF14163 SieB: Superinfection 23.1 3.3E+02 0.0072 21.8 6.5 42 134-175 33-83 (151)
64 TIGR01654 bact_immun_7tm bacte 23.1 8.1E+02 0.018 25.0 12.2 25 168-192 198-222 (679)
65 PRK09421 modB molybdate ABC tr 22.4 4.8E+02 0.01 22.1 7.7 52 149-200 107-158 (229)
No 1
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.1e-49 Score=422.54 Aligned_cols=239 Identities=32% Similarity=0.570 Sum_probs=222.2
Q ss_pred cccccccccch-------hhhhhhccCceEEEEEecCC----CCCCCcceEEEEecCCccCccccccCCccccccCCCCC
Q psy7369 5 AVQYDRLTDVT-------GNLTRMEQAFFTVLQFFCGN----TSARHTLEEYKNSQMFGAKLMSTALIGDTYISDRFYTL 73 (265)
Q Consensus 5 ~~~~~~~~~~~-------~~~~~~~~~~~~agVvF~~~----~~~p~~~~~YtIR~~~~~~~~~~~~~~T~~~~~~~~~~ 73 (265)
||++||++++. +|++++++++++|||+|+++ +++|.+ ++|+||+|.+ ..++|++..+.+|.+
T Consensus 519 c~~~d~~~~~~~~~~~~~~~~~l~~~~~~~agI~F~~~~~~~~~~p~~-v~y~IR~~~~------~~~~t~~~~~~~w~~ 591 (2272)
T TIGR01257 519 CLVLDKFESYDDEVQLTQRALSLLEENRFWAGVVFPDMYPWTSSLPPH-VKYKIRMDID------VVEKTNKIKDRYWDS 591 (2272)
T ss_pred HeeccceecCCCHHHHHHHHHHHhhcCCeEEEEEeCCCcccccCCCCc-eEEEEecCcc------ccCcchhhccccccC
Confidence 99999999887 79999999999999999872 457888 9999999988 457788877888999
Q ss_pred CCCCCCCCCcchhhccHHHHHHHHHHHHHHHHhCCCCCcceeeeecCCCccchhHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy7369 74 DPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMIC 153 (265)
Q Consensus 74 gp~~~~~~d~~Y~~~GFl~LQ~~Id~aii~~~~~~~~~~~v~~~~fP~p~~~~~~f~~~~~~~~~~~~~l~~l~~v~~~v 153 (265)
||+.++..|+.|+.+||++||++||++|++..++....+++++|+||||+|.+|.++..++..+|++++++|++++..++
T Consensus 592 g~~~~~~~~~~Y~~~GFl~lQ~ai~~aii~~~~~~~~~~~v~~q~~P~P~y~~d~~l~~~~~~~pl~~~la~~~~~~~lv 671 (2272)
T TIGR01257 592 GPRADPVEDFRYIWGGFAYLQDMVEQGITRSQMQAEPPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTV 671 (2272)
T ss_pred CCCCCccccccHHHhhHHHHHHHHHHHHHHhhcCCCcccceeeeeCCCCCeeccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987666789999999999999999999998776667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecCChhHHHHHHHHHHHHHHHHH
Q psy7369 154 KSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRMDNNTLWA 233 (265)
Q Consensus 154 ~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s~~~vlf~~~~l~~~~~~~~~ 233 (265)
+.||.|||+|+||+||||||++++||+|||+.+++..++++++++++++. +.+|++||++++|+++++|+++.+.||
T Consensus 672 ~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~~---~~~~~~s~~~~lfl~~~~y~~s~I~~~ 748 (2272)
T TIGR01257 672 KSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMH---GRILHYSDPFILFLFLLAFSTATIMQC 748 (2272)
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CceeecCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888877 689999999999999999999999999
Q ss_pred H---HhcCCCcccccccceEEEE
Q psy7369 234 L---INFTQPGYDKLKPTLTYSI 253 (265)
Q Consensus 234 ~---sfF~~~r~a~~~~~~~~~~ 253 (265)
| +||+|+|+|+++++++|++
T Consensus 749 fliS~fFska~~A~~~~~li~f~ 771 (2272)
T TIGR01257 749 FLLSTFFSKASLAAACSGVIYFT 771 (2272)
T ss_pred HHHHHHhCchHHHHHHHHHHHHH
Confidence 9 9999999999999999754
No 2
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=99.21 E-value=5.6e-12 Score=113.22 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhCCC--------CCcceeeeecCCCccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 91 AYLQDMVEQSIIQEHTGRE--------STPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQE 162 (265)
Q Consensus 91 l~LQ~~Id~aii~~~~~~~--------~~~~v~~~~fP~p~~~~~~f~~~~~~~~~~~~~l~~l~~v~~~v~~IV~EKE~ 162 (265)
..+|+.+++ +.+...... ...++..+..|...... .......++++.+.++..+......+++|||+
T Consensus 114 ~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~ek~~ 188 (344)
T PF12698_consen 114 QIIQNALSS-LLQQLNASSEGKSAIQSSNSPIPVESIPLSNPSS----SFASYLIPFILFFILLIGFSFIAMSIVEEKES 188 (344)
T ss_dssp HHHHHHHHH-HHHHHHHCCCGCCCCHHHT--EEEEEEEECCCHH----HCHTT---------------------------
T ss_pred hhhhccccc-cchhhhhhhhhhhhhccccccccccccccccccc----cccccccccchhHHHHHHHHhhchhhhhHhhh
Confidence 557777777 555433211 12334455544422221 22334556666666666666678899999999
Q ss_pred hHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecCChhHHHHHHHHHHHHHHHHHH---HhcCC
Q psy7369 163 RLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRMDNNTLWAL---INFTQ 239 (265)
Q Consensus 163 ~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s~~~vlf~~~~l~~~~~~~~~~---sfF~~ 239 (265)
|++|.|+++|++.+.+|++|++..++..++.++++.++ .. +...++..++..+++++++++.+.+++++ ++|++
T Consensus 189 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~i-~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~is~~~~~ 265 (344)
T PF12698_consen 189 GTRERLLSSGVSPWSYWLSKFLAYFLVSLIQSLIIIII-IF--GISGIPFGNFLLLLLLLLLFSLAFISFGFLISSFFKN 265 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHhhhcccCCHHHHHHHHHHHHhhHHHHHHHHHHHH-Hh--ccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999988777664 22 00135666888888888999999888877 89999
Q ss_pred CcccccccceEEE
Q psy7369 240 PGYDKLKPTLTYS 252 (265)
Q Consensus 240 ~r~a~~~~~~~~~ 252 (265)
++.+..+.+++..
T Consensus 266 ~~~~~~~~~~~~~ 278 (344)
T PF12698_consen 266 SSTAISVASIIIL 278 (344)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 9888776665543
No 3
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.97 E-value=6.5e-09 Score=114.09 Aligned_cols=151 Identities=11% Similarity=0.128 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHhCCCC-----CcceeeeecCCCccchhHH--H-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7369 92 YLQDMVEQSIIQEHTGRES-----TPGIVLQQFPYPCYIEDQF--I-KAVSKTFPLFMVLSWVFACSMICKSIVYEKQER 163 (265)
Q Consensus 92 ~LQ~~Id~aii~~~~~~~~-----~~~v~~~~fP~p~~~~~~f--~-~~~~~~~~~~~~l~~l~~v~~~v~~IV~EKE~~ 163 (265)
..-+.+++|+++...++.. .+.+.-.++|.+....... . ......+++++++++.+..+.++..+|.|||.|
T Consensus 1629 ~~lN~l~NaiLr~~~~~~~~~~~~~I~v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~asfv~~~V~ER~sk 1708 (2272)
T TIGR01257 1629 SFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQERVNK 1708 (2272)
T ss_pred HHHHHHHHHHHHHhcccccCCccceEEEEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHheeeehHHhhh
Confidence 4568899999987644321 2334445666554332111 1 122334577788888888899999999999999
Q ss_pred HHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cceeecCChhHHHHHHHHHHHHHHHHHH---HhcCC
Q psy7369 164 LKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDF-NKIVPYNDSATAENDAFLRMDNNTLWAL---INFTQ 239 (265)
Q Consensus 164 lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~-~~vf~~s~~~vlf~~~~l~~~~~~~~~~---sfF~~ 239 (265)
.|.++.++|++..+||+|.|++-++.++++++++.+++.. ++ ..+....++..+++++++||++.+.++. -+|++
T Consensus 1709 aK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~-f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~SflF~~ 1787 (2272)
T TIGR01257 1709 AKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIG-FQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFDV 1787 (2272)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999998888777654 22 1233446777889999999999999877 55666
Q ss_pred Cccc
Q psy7369 240 PGYD 243 (265)
Q Consensus 240 ~r~a 243 (265)
+..|
T Consensus 1788 ~~~A 1791 (2272)
T TIGR01257 1788 PSTA 1791 (2272)
T ss_pred chhH
Confidence 6655
No 4
>KOG0059|consensus
Probab=98.89 E-value=5.1e-08 Score=100.77 Aligned_cols=154 Identities=13% Similarity=0.210 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcceeeeecCCCccchhHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q psy7369 90 FAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKA-VSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMM 168 (265)
Q Consensus 90 Fl~LQ~~Id~aii~~~~~~~~~~~v~~~~fP~p~~~~~~f~~~-~~~~~~~~~~l~~l~~v~~~v~~IV~EKE~~lkE~m 168 (265)
+-.+....++++.+...+.. +..+.-|.|.......... .....++++.+.+.+.....+...+.||+.|.|..|
T Consensus 256 ~~~~~~~~~n~l~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~e~~~~~~~~~ 331 (885)
T KOG0059|consen 256 LPFLLGLGSNALRRALNLSG----ISVLNEPMPLSGAQLSLDLLADLLGALFLLFVFLLLFSVFLLSLILERQQRLRHQQ 331 (885)
T ss_pred HHHhcchHHHHHHHhhcccc----ceeeecCcCccHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Confidence 44558888888887665443 4444334444333322222 345667788888888888899999999999999999
Q ss_pred hhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecCChhHHHHHHHHHHHHHHHHHH---HhcCCCccccc
Q psy7369 169 RVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRMDNNTLWAL---INFTQPGYDKL 245 (265)
Q Consensus 169 kiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s~~~vlf~~~~l~~~~~~~~~~---sfF~~~r~a~~ 245 (265)
+++|+++++||++|+++-.+.+++..+++.+++.. +..+...+..++++++++|+.+.+.+.+ .+|+++..+..
T Consensus 332 ~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~---f~~~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v 408 (885)
T KOG0059|consen 332 LIAGLSPSTYWLFALVWDLLLYLLILLILLIFVLI---FGFFAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASV 408 (885)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhe---eecccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCcee
Confidence 99999999999999999999999998888777765 3357777888999999999999888877 88999998887
Q ss_pred ccceE
Q psy7369 246 KPTLT 250 (265)
Q Consensus 246 ~~~~~ 250 (265)
...+.
T Consensus 409 ~~~i~ 413 (885)
T KOG0059|consen 409 ILSIY 413 (885)
T ss_pred ehhhH
Confidence 75544
No 5
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.76 E-value=0.1 Score=45.30 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 137 FPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLV 202 (265)
Q Consensus 137 ~~~~~~l~~l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~ 202 (265)
.|-.+..+.+.........+..|||++.-+-+.....+.+.++++..+...+..++..+++.++..
T Consensus 51 ~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~ 116 (236)
T TIGR01247 51 VPGIVAMTVFNMSFFSGISVIWDRQFGFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSF 116 (236)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344344433333333456788999999888888889999999999999998888877666555543
No 6
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.58 E-value=0.17 Score=44.70 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHH
Q psy7369 152 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAV 195 (265)
Q Consensus 152 ~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~i 195 (265)
..+.+++|||+|--|.+....++.+...++-++...+..++..+
T Consensus 69 ~~~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~ 112 (240)
T TIGR03518 69 TMRSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALL 112 (240)
T ss_pred HHHHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999988877665443
No 7
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=95.36 E-value=0.52 Score=40.84 Aligned_cols=62 Identities=6% Similarity=0.001 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 137 FPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS 198 (265)
Q Consensus 137 ~~~~~~l~~l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~ 198 (265)
.|...+...+.........+++|||+|.-|-++.+.++.+.+.++..+...+..++..++..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~ 101 (232)
T TIGR00025 40 PVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQTLILL 101 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666778899999999999999999999999999997776666555544433
No 8
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=94.91 E-value=0.4 Score=45.73 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 137 FPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 201 (265)
Q Consensus 137 ~~~~~~l~~l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil 201 (265)
.++++++.+++........++.|||+|.-|.+-.+.++...+..+-.+...++.+....+..+.+
T Consensus 191 ~~ll~~~~~~~~~~~~~~sva~EKe~rtlE~LLssPvSr~~ii~gKil~~~~v~l~~~~~~~l~~ 255 (407)
T COG1668 191 IFLLFFIPLSYAGQMVADSVAGEKERRTLEVLLSSPVSRSEIVFGKILGAALVGLTQIALWLLAL 255 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhccCcChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555889999999999999999999999999999999988877776644444333
No 9
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=94.26 E-value=1.1 Score=36.61 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 152 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 201 (265)
Q Consensus 152 ~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil 201 (265)
.-..++.|||+|.-|-++..-++.+.+.++..+...+..++..+++.++.
T Consensus 8 ~~~~i~~dr~~G~~~~l~~tP~~~~~~~~g~~l~~~~~~~~~~~ii~~v~ 57 (152)
T TIGR01248 8 NAIDITIDREIGLLSRLWVLPIHRASALLARIIAETIRAFIGTILILAIA 57 (152)
T ss_pred HHHHHHHHHHhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578999999999999999999999999999999888888776665554
No 10
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=93.05 E-value=2.2 Score=37.45 Aligned_cols=66 Identities=11% Similarity=0.148 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 136 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 201 (265)
Q Consensus 136 ~~~~~~~l~~l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil 201 (265)
..|-++.++.+.........++.|||++.-+.++.+.++...+.++..+...+..++..+++.++.
T Consensus 62 l~pGi~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~ 127 (253)
T TIGR03861 62 IVPGLCCMILLFNGMQSSLSMVYDREMGSMRVLLTSPLPRPFLLFCKLLASALISLLQVYAFLAIA 127 (253)
T ss_pred HHHHHHHHHHHHHHHHhhhHhHHhHhcCHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333445678999999999999999999999999999999888888765544443
No 11
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=92.71 E-value=2.9 Score=36.87 Aligned_cols=98 Identities=8% Similarity=-0.090 Sum_probs=58.3
Q ss_pred hhhhhHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceee
Q psy7369 134 SKTFPLFMVLSWVFAC--SMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVP 211 (265)
Q Consensus 134 ~~~~~~~~~l~~l~~v--~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~ 211 (265)
+...|-++.++.+... ......+.+|||+|.-|.+...-++...+-++..+...+..++..+++.++... ....+
T Consensus 58 ~f~~pg~l~~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~---~g~~~ 134 (253)
T TIGR01291 58 AFLAAGMVATSAMTASTFETIYATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTAT---LGYIE 134 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhch
Confidence 3445555555444332 222346789999999999999999999999999988777666655544433322 12223
Q ss_pred cCChhHHHHHHHHHHHHHHHHHH
Q psy7369 212 YNDSATAENDAFLRMDNNTLWAL 234 (265)
Q Consensus 212 ~s~~~vlf~~~~l~~~~~~~~~~ 234 (265)
..++..++...++++.+...+++
T Consensus 135 ~~~~l~~~~~~ll~~l~~~~lg~ 157 (253)
T TIGR01291 135 WWSLIYILPVIALTGLAFASLSM 157 (253)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 33343333444445544444443
No 12
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=91.93 E-value=3.6 Score=35.50 Aligned_cols=97 Identities=14% Similarity=0.068 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecCC
Q psy7369 136 TFPLFMVLSWVFA-CSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYND 214 (265)
Q Consensus 136 ~~~~~~~l~~l~~-v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s~ 214 (265)
..|-.+.+..++. .......+.+|||.+..|.+..+.++...+.++..+...+...+...++.++..... ++-...+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--g~~~~~~ 167 (286)
T COG0842 90 IVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLL--GVPFLGS 167 (286)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHhhCcHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCc
Confidence 3344333443333 333334444469999999999999996665665555555555444444444433311 2223344
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy7369 215 SATAENDAFLRMDNNTLWAL 234 (265)
Q Consensus 215 ~~vlf~~~~l~~~~~~~~~~ 234 (265)
+........++....+.+++
T Consensus 168 ~~~~~~~~~~~~~~~~~lg~ 187 (286)
T COG0842 168 LLLLLLLLLLLLLATVALGL 187 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333
No 13
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=88.98 E-value=1.8 Score=37.87 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHH
Q psy7369 148 ACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVM 190 (265)
Q Consensus 148 ~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~ 190 (265)
....-...+..|||+|--|.+-...++.+.+.++-++...+..
T Consensus 82 ~~~l~~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~ 124 (277)
T PF12679_consen 82 AIILASDLIAGERERGTIELLLSKPISRSEILLGKFLAAILFS 124 (277)
T ss_pred HHHHHHHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4445677899999999999999999999999999999887773
No 14
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=87.19 E-value=8.2 Score=32.55 Aligned_cols=96 Identities=13% Similarity=0.024 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecCCh
Q psy7369 136 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDS 215 (265)
Q Consensus 136 ~~~~~~~l~~l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s~~ 215 (265)
+.|.++.++..+ .......+..+||.|. +....+.+.++++-.+...+..++.++++.++..... ++ +..++
T Consensus 25 ~~p~~~~~~l~~-ga~~~~~~~~~~~~~~----~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~--g~-~~~~~ 96 (208)
T TIGR03062 25 LAPYFLSLALFV-GALVLNMIIPPLSRRA----LPKSARSWRIALAKLLPGGLIGVLQAIILYGVLILGL--GL-DPAHP 96 (208)
T ss_pred hHHHHHHHHHHH-HHHHHHHHhccccccc----cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CC-ccCCH
Confidence 456665555332 3333444556666544 3566888889999999988888887777666554311 11 22355
Q ss_pred hHHHHHHHHHHHHHHHHHH---HhcCC
Q psy7369 216 ATAENDAFLRMDNNTLWAL---INFTQ 239 (265)
Q Consensus 216 ~vlf~~~~l~~~~~~~~~~---sfF~~ 239 (265)
..+++..++.+.+..+.+. +.+++
T Consensus 97 ~~~~l~~~l~~~~~~~lg~~l~~~~~~ 123 (208)
T TIGR03062 97 PATFGFAILTSLTFMAIIQFLVALFGN 123 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 5555555666666555444 55543
No 15
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=86.10 E-value=7.5 Score=39.03 Aligned_cols=95 Identities=15% Similarity=0.032 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecC--ChhHHHHHHHHHHH
Q psy7369 151 MICKSIVYEKQERLKEMMRVMGL-SNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYN--DSATAENDAFLRMD 227 (265)
Q Consensus 151 ~~v~~IV~EKE~~lkE~mkiMGL-~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s--~~~vlf~~~~l~~~ 227 (265)
..+..+..||..=.||.- .|+ +..+|++|..+..+...++..++.+++..+- .=++.+ .+...++..++..+
T Consensus 410 ~~~~~f~~er~v~~rE~~--~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~---~gl~~~~~~f~~f~l~~~l~~~ 484 (617)
T TIGR00955 410 PVINVFTAELPVFLRETR--SGLYRVSAYFLAKTIAELPLFIILPALFTSITYWM---IGLRSGATHFLTFLFLVTLVAN 484 (617)
T ss_pred HHHHHHHHHHHHHHHhhc--CCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhee---ccCCccHHHHHHHHHHHHHHHH
Confidence 345567788887777764 454 7789999999999888888777777776551 112222 11221222222333
Q ss_pred HHHHHHH---HhcCCCcccccccceE
Q psy7369 228 NNTLWAL---INFTQPGYDKLKPTLT 250 (265)
Q Consensus 228 ~~~~~~~---sfF~~~r~a~~~~~~~ 250 (265)
+..+++. +++.+...|..+++++
T Consensus 485 ~~~s~~~~i~~~~~~~~~a~~~~~~~ 510 (617)
T TIGR00955 485 VATSFGYLISCAFSSTSMALTVGPPF 510 (617)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 3333333 7778888888877765
No 16
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=85.08 E-value=12 Score=30.58 Aligned_cols=47 Identities=11% Similarity=0.105 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 152 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS 198 (265)
Q Consensus 152 ~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~ 198 (265)
....+.+|+|+|.-+.+...+.+...++.+-++...+..++..++..
T Consensus 66 ~~~~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~ 112 (232)
T PF12730_consen 66 AALLFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISF 112 (232)
T ss_pred HHHHHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999999999999988887777666543
No 17
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=84.61 E-value=10 Score=32.77 Aligned_cols=54 Identities=7% Similarity=0.156 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 148 ACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 201 (265)
Q Consensus 148 ~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil 201 (265)
....+-|...+|+|+|--|.+++-+.+..+.+++-.+...+...+..++...+.
T Consensus 60 ~~l~~~r~f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~ 113 (215)
T PF03379_consen 60 SLLGLNRSFAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLF 113 (215)
T ss_pred HHHHhhHhHHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456789999999999999999999999999999988888877666555444
No 18
>PLN03211 ABC transporter G-25; Provisional
Probab=83.76 E-value=6.9 Score=39.72 Aligned_cols=96 Identities=9% Similarity=-0.071 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecC--ChhHHHHHHHHHHHH
Q psy7369 151 MICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYN--DSATAENDAFLRMDN 228 (265)
Q Consensus 151 ~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s--~~~vlf~~~~l~~~~ 228 (265)
..+.....||.-=.||.-.-| .+..+|++|+.+.-+-..++.+++++++.++- .=++.+ .+...++..++..++
T Consensus 456 ~~~~~f~~er~v~~rE~~~~~-Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m---~Gl~~~~~~F~~f~li~~l~~~~ 531 (659)
T PLN03211 456 NSVFVFPQERAIFVKERASGM-YTLSSYFMARIVGDLPMELILPTIFLTVTYWM---AGLKPELGAFLLTLLVLLGYVLV 531 (659)
T ss_pred HHHHHHHHhhHHHHHhhhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHhheeEc---CCCcCCHHHHHHHHHHHHHHHHH
Confidence 455667889998889985444 57799999999999888888888877776651 112322 223333333444555
Q ss_pred HHHHHH---HhcCCCcccccccceE
Q psy7369 229 NTLWAL---INFTQPGYDKLKPTLT 250 (265)
Q Consensus 229 ~~~~~~---sfF~~~r~a~~~~~~~ 250 (265)
..+++. +.+.+...|..+++++
T Consensus 532 ~~s~g~~i~a~~~~~~~a~~~~~~~ 556 (659)
T PLN03211 532 SQGLGLALGAAIMDAKKASTIVTVT 556 (659)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555544 7778888888777765
No 19
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=80.99 E-value=0.11 Score=43.33 Aligned_cols=93 Identities=14% Similarity=0.080 Sum_probs=61.1
Q ss_pred HHHHHHHHhHHHHhhhcCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecCChhHHHHHHHHHHHHHHHHH
Q psy7369 155 SIVYEKQERLKEMMRVMGL-SNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRMDNNTLWA 233 (265)
Q Consensus 155 ~IV~EKE~~lkE~mkiMGL-~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s~~~vlf~~~~l~~~~~~~~~ 233 (265)
....|||++.-+..+..|+ +...+.++..+..++..++..+++.++..... ++ +..++...++..++..+.....+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~~g 148 (210)
T PF01061_consen 72 SISFERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLF--GL-DFESFFLFLLILLLSILCSSGLG 148 (210)
T ss_pred hhhhhhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhh--cc-ccccchheecccccccccccccc
Confidence 3788999999999999999 99999999999998888887777766554411 11 11133333333334333333333
Q ss_pred H---HhcCCCcccccccceE
Q psy7369 234 L---INFTQPGYDKLKPTLT 250 (265)
Q Consensus 234 ~---sfF~~~r~a~~~~~~~ 250 (265)
. +++.+.+.+....+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~ 168 (210)
T PF01061_consen 149 LLLAALFPSFRDASAISSLI 168 (210)
T ss_pred cccccchhhhhhhhhhhhhc
Confidence 3 6666777777666655
No 20
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=76.02 E-value=17 Score=40.31 Aligned_cols=93 Identities=6% Similarity=-0.111 Sum_probs=53.3
Q ss_pred HHHHHHHH-hHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecC-C-------hhHHHHHHHHH
Q psy7369 155 SIVYEKQE-RLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYN-D-------SATAENDAFLR 225 (265)
Q Consensus 155 ~IV~EKE~-~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s-~-------~~vlf~~~~l~ 225 (265)
..+.||+. -.||.-.-| .+..+|.+|..+.-+-..++.++++.++..+. .++-... . ++..++..+++
T Consensus 1150 ~f~~~r~~~~~RE~~s~~-Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~--~Gl~~~~~~~~~~~~~f~~~~~~~~~~ 1226 (1394)
T TIGR00956 1150 PFVAQRDLYEVRERPSRT-FSWLAFIAAQITVEIPYNLVAGTIFFFIWYYP--VGFYWNASKTGQVHERGVLFWLLSTMF 1226 (1394)
T ss_pred hHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHhheeec--ccccCcccccccccchHHHHHHHHHHH
Confidence 34455554 356744322 45567777777777777777776666665441 1111111 1 44444444555
Q ss_pred HHHHHHHHH---HhcCCCcccccccceE
Q psy7369 226 MDNNTLWAL---INFTQPGYDKLKPTLT 250 (265)
Q Consensus 226 ~~~~~~~~~---sfF~~~r~a~~~~~~~ 250 (265)
.+...+++. +.+.+..+|..+.+++
T Consensus 1227 ~~~~~s~g~~~~~~~~~~~~a~~~~~~~ 1254 (1394)
T TIGR00956 1227 FLYFSTLGQMVISFNPNADNAAVLASLL 1254 (1394)
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 555555555 8888888888877765
No 21
>PLN03140 ABC transporter G family member; Provisional
Probab=73.34 E-value=30 Score=38.60 Aligned_cols=91 Identities=11% Similarity=0.016 Sum_probs=53.8
Q ss_pred HHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecCChhHHHHHH--HHHHHHHHHHH
Q psy7369 156 IVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDA--FLRMDNNTLWA 233 (265)
Q Consensus 156 IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s~~~vlf~~~--~l~~~~~~~~~ 233 (265)
+..||.-=.||.-.-| .+.++|.+|..+.-+-..++.+++..++..+. .=|+.+-....++++ ++..+...+++
T Consensus 1270 ~~~eR~vf~REr~~~~-Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m---~Gl~~~~~~f~~~~~~~~l~~~~~~~~g 1345 (1470)
T PLN03140 1270 VAVERTVFYRERAAGM-YSALPYAIAQVVCEIPYVLIQTTYYTLIVYAM---VAFEWTAAKFFWFYFISFFSFLYFTYYG 1345 (1470)
T ss_pred HHHHHHHHHHHHhcCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446655555554333 56788888888888888888888888777662 112322222222222 22233344443
Q ss_pred H---HhcCCCcccccccceE
Q psy7369 234 L---INFTQPGYDKLKPTLT 250 (265)
Q Consensus 234 ~---sfF~~~r~a~~~~~~~ 250 (265)
. +.+.+..+|+.+++++
T Consensus 1346 ~~~~a~~p~~~~A~~~~~~~ 1365 (1470)
T PLN03140 1346 MMTVSLTPNQQVAAIFAAAF 1365 (1470)
T ss_pred HHHHHHCCcHHHHHHHHHHH
Confidence 3 7778888888877765
No 22
>PF13346 ABC2_membrane_5: ABC-2 family transporter protein
Probab=71.33 E-value=57 Score=26.88 Aligned_cols=51 Identities=12% Similarity=0.315 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 152 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLV 202 (265)
Q Consensus 152 ~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~ 202 (265)
.......|+++|-.++..++-.+...+-.|-++...+..++..++..+...
T Consensus 52 ~~~~~~~d~~~~~~~~~~slPvsr~~iV~akyl~~~i~~~~~~l~~~i~~~ 102 (206)
T PF13346_consen 52 VMSSFSYDEKSKWNKYLNSLPVSRKEIVLAKYLFSLIIILIGSLISLIIAF 102 (206)
T ss_pred HHHHHHHHHhcChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677889999999999999999999999999988888777665543
No 23
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=71.26 E-value=92 Score=29.25 Aligned_cols=23 Identities=4% Similarity=-0.142 Sum_probs=19.9
Q ss_pred cchhhhhhhccCceEEEEEecCC
Q psy7369 13 DVTGNLTRMEQAFFTVLQFFCGN 35 (265)
Q Consensus 13 ~~~~~~~~~~~~~~~agVvF~~~ 35 (265)
.-+++.+..++.++||||+-+.+
T Consensus 80 ~~~~~~~~V~~~kywaAI~I~~n 102 (382)
T PF12051_consen 80 SPEEAREGVYDGKYWAAIVIPPN 102 (382)
T ss_pred CHHHHHHHHhcccEEEEEEeCCC
Confidence 45589999999999999999983
No 24
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=70.79 E-value=71 Score=27.75 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 139 LFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 201 (265)
Q Consensus 139 ~~~~l~~l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil 201 (265)
++++.+.+-....+=|...+|+|+|--|.+.+-+.+....|++-.+...+...+.-++..-+.
T Consensus 48 ilWva~lfa~ll~l~rlF~~d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~ 110 (211)
T TIGR01190 48 IVWVGALLSSLLSLDRLFRDDFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLL 110 (211)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455567789999999999999999999999999999988887776665554443
No 25
>KOG0061|consensus
Probab=65.85 E-value=1.2e+02 Score=30.57 Aligned_cols=95 Identities=7% Similarity=-0.058 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecCChhHHHHHHHHHHHHHH-
Q psy7369 152 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRMDNNT- 230 (265)
Q Consensus 152 ~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s~~~vlf~~~~l~~~~~~- 230 (265)
.+-....|+..=+||.-.-+= +.++|.+|+.+...-..++.+++.+.+..+ ..-++.+....+++...+....+.
T Consensus 408 ~i~~f~~e~~~f~rE~~~~~Y-~~s~y~la~~l~~lP~~~i~~~if~~i~Y~---m~gl~~~~~~f~~~~l~~~~~~~~a 483 (613)
T KOG0061|consen 408 AVPVFPQERPIFLRETSSGLY-RLSSYYLAKTLAELPFLLVLSIIFSSIVYW---MVGLNPGLSRFLYFLLIILLSSLVA 483 (613)
T ss_pred HHHHhHHHHHHHHHHHhcCch-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---hccCCcchHHHHHHHHHHHHHHHHH
Confidence 345566677666666543332 678999999998888888888877777665 111222222222222222222222
Q ss_pred -HHHH---HhcCCCcccccccceE
Q psy7369 231 -LWAL---INFTQPGYDKLKPTLT 250 (265)
Q Consensus 231 -~~~~---sfF~~~r~a~~~~~~~ 250 (265)
++.. +-+.+.+.|...++.+
T Consensus 484 ~s~~~~i~~~~~~~~~a~~~~~~~ 507 (613)
T KOG0061|consen 484 ESLGLFISAIVPNLSLATSLGPVL 507 (613)
T ss_pred HHHHHHHHHhccchhheeehHHHH
Confidence 2222 6666667766666554
No 26
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=65.00 E-value=44 Score=29.30 Aligned_cols=94 Identities=15% Similarity=0.051 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH--HH-HHhhcCcceeecCChh----HHHHHHHH
Q psy7369 152 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS--LL-LVCIDFNKIVPYNDSA----TAENDAFL 224 (265)
Q Consensus 152 ~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~--ii-l~~~~~~~vf~~s~~~----vlf~~~~l 224 (265)
-..-+..|+|+|--+.+-.--.+.+.-.+|-++...+..++..++.. +. .... ....+..+.. .......+
T Consensus 79 ~~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~l 156 (278)
T COG1277 79 GADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLL--FGFPGNVSSISRLLLFLGSSLL 156 (278)
T ss_pred ccchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcccchHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999988877777666555 11 1110 1122222222 22333356
Q ss_pred HHHHHHHHHH---HhcCCCccccccc
Q psy7369 225 RMDNNTLWAL---INFTQPGYDKLKP 247 (265)
Q Consensus 225 ~~~~~~~~~~---sfF~~~r~a~~~~ 247 (265)
++....++++ +.++++..+..++
T Consensus 157 ~~~~~~~~~~~~s~~~~~~~~~~~~~ 182 (278)
T COG1277 157 YGLVLLSISLLISSLFSSSSLALLVS 182 (278)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHH
Confidence 6766665555 7777766655444
No 27
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=64.93 E-value=54 Score=24.21 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHH
Q psy7369 147 FACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVL 196 (265)
Q Consensus 147 ~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii 196 (265)
..+....+..++|| +|--..+|.+|.+...-....+....+..+++.++
T Consensus 13 ~~~~~~~~~~~~~~-~~~~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~ 61 (121)
T PF02687_consen 13 FILFNIISSSIRER-RREIAILRALGASKRQIRKMFLYEALLIALIGILI 61 (121)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHH
Confidence 33444555555555 45567889999999766666555555555544433
No 28
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. F
Probab=63.66 E-value=43 Score=27.29 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 146 VFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLL 200 (265)
Q Consensus 146 l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~ii 200 (265)
............+|.++++.|..+.+|.+.+..|.-..+-...-.+++.++..+.
T Consensus 85 ~~~~~~~~~~~~~~i~~~~~eaa~~~G~~~~~~~~~v~lp~~~~~i~~~~~~~~~ 139 (190)
T cd06261 85 APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFA 139 (190)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHcCCCHhHHhHHhhhhhhhHHHHHHHHHHHH
Confidence 4445566778888999999999999999998888777666655555555544433
No 29
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=59.74 E-value=3.5 Score=29.02 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.1
Q ss_pred HHHHHHhHHHHhhhcCCcchHHHH
Q psy7369 157 VYEKQERLKEMMRVMGLSNGVHWT 180 (265)
Q Consensus 157 V~EKE~~lkE~mkiMGL~~~~~wl 180 (265)
|.||-.+-||-|+.+||++.-.|+
T Consensus 1 v~~RV~khR~~lRa~GLRPVqiWV 24 (65)
T PF11455_consen 1 VRERVRKHRERLRAAGLRPVQIWV 24 (65)
T ss_pred ChHHHHHHHHHHHHcCCCcceeeC
Confidence 578999999999999999987774
No 30
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=57.90 E-value=1.5e+02 Score=27.08 Aligned_cols=55 Identities=9% Similarity=0.269 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHH
Q psy7369 137 FPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMII 192 (265)
Q Consensus 137 ~~~~~~l~~l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li 192 (265)
+.+++.++.+..+.+.++-.+.||. +-=+.||.+|-+++---.=+..-..+..++
T Consensus 185 ~~~l~~~~~~~~i~ntir~~v~~r~-~ei~im~~~GAt~~~I~~~fl~eg~~~g~~ 239 (309)
T PRK11026 185 IGVLMVAAVFLVIGNSVRLSIFSRR-DTINVMKLIGATDGFILRPFLYGGALLGFS 239 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 3444455555556678888888995 456889999999865333344444443333
No 31
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=56.93 E-value=19 Score=25.96 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=27.4
Q ss_pred HHHHHHHhHHHHhhhcCCcchHHHHHHHHHHH
Q psy7369 156 IVYEKQERLKEMMRVMGLSNGVHWTAWFIDSI 187 (265)
Q Consensus 156 IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~ 187 (265)
..+|.+.|.|.++-+||+.--.+-+++++...
T Consensus 9 ~~~d~~~R~r~Y~i~M~~Ri~~fvlA~~~~~~ 40 (73)
T PF11298_consen 9 LSQDQRRRRRRYLIMMGIRIPCFVLAAVVYRL 40 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45788899999999999999888888887754
No 32
>PRK15066 inner membrane transport permease; Provisional
Probab=54.40 E-value=1.5e+02 Score=25.86 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHH
Q psy7369 151 MICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVL 196 (265)
Q Consensus 151 ~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii 196 (265)
.....+++|||.|.-|-+...-++...+-++-.+...+..+...++
T Consensus 79 ~~~~~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~i 124 (257)
T PRK15066 79 NVASSFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGIL 124 (257)
T ss_pred HHHHHHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899888777788889999998888888776664544333
No 33
>PLN03140 ABC transporter G family member; Provisional
Probab=53.96 E-value=67 Score=35.98 Aligned_cols=75 Identities=11% Similarity=-0.136 Sum_probs=43.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecC--ChhHHHHHHHHHHHHHHHHHH---HhcCCCccccccc
Q psy7369 173 LSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYN--DSATAENDAFLRMDNNTLWAL---INFTQPGYDKLKP 247 (265)
Q Consensus 173 L~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s--~~~vlf~~~~l~~~~~~~~~~---sfF~~~r~a~~~~ 247 (265)
.+.++|.++-.+.-+-..++.+++.+++..+- .=|..+ .++..+++.++..++..+++. +.+.+...|..++
T Consensus 608 Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m---~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~ 684 (1470)
T PLN03140 608 HPPWTFTLPTFLLGIPISIIESVVWVVITYYS---IGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGG 684 (1470)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh---cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 46789999888888888888777777776662 112222 222222222332223333322 6777777777777
Q ss_pred ceE
Q psy7369 248 TLT 250 (265)
Q Consensus 248 ~~~ 250 (265)
+++
T Consensus 685 ~~~ 687 (1470)
T PLN03140 685 ALV 687 (1470)
T ss_pred HHH
Confidence 665
No 34
>COG4591 LolE ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]
Probab=49.91 E-value=1.6e+02 Score=28.26 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy7369 145 WVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLL 197 (265)
Q Consensus 145 ~l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~ 197 (265)
-.+.+.+.+..+|.||. |=--.||.||+++..--...+.-..+.-++.+++=
T Consensus 283 A~fnI~ssL~m~V~ek~-~eIAILrtmGa~~~~I~~iFl~~G~~iG~iG~llG 334 (408)
T COG4591 283 AAFNIISSLTMLVKEKT-REIAILRAMGASPSHIMRIFLLQGLIIGLIGALLG 334 (408)
T ss_pred HHHHHHHHHHHHhhhhh-hHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778899995 44578999999998777666666666665555443
No 35
>PF00528 BPD_transp_1: Binding-protein-dependent transport system inner membrane component; InterPro: IPR000515 Bacterial binding protein-dependent transport systems [, ] are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown [, ] that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems [] to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices, however they can be classified into seven families which have been respectively termed: araH, cysTW, fecCD, hisMQ, livHM, malFG and oppBC.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2ONK_H 3PUX_G 3PUY_G 2R6G_G 3PV0_G 3RLF_G 3PUW_G 3PUV_G 3PUZ_G 3TUI_E ....
Probab=48.44 E-value=69 Score=25.56 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 144 SWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS 198 (265)
Q Consensus 144 ~~l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~ 198 (265)
..............++..+...|..+.+|.+.+..+.-..+-...-.++...+..
T Consensus 63 ~~~~~~~~~~~~~~~~i~~~~~eaa~~~G~s~~~~~~~v~lP~~~p~i~~~~~~~ 117 (185)
T PF00528_consen 63 FWFPFAIIIIYNALRSIPKEYIEAARILGASRWQIFRKVILPNIKPGILSAFILS 117 (185)
T ss_dssp HHHHHHHHHHHHHHCCS-THHHHHHHHTTS-HHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCccceeeHHHHHHHHHHHHHHH
Confidence 3344455567777778888999999999999988887666655555554444443
No 36
>PRK15111 antimicrobial peptide ABC transporter permease SapC; Provisional
Probab=40.78 E-value=2.1e+02 Score=25.79 Aligned_cols=42 Identities=17% Similarity=-0.085 Sum_probs=30.0
Q ss_pred HHHHHHHHH-HHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHH
Q psy7369 149 CSMICKSIV-YEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVM 190 (265)
Q Consensus 149 v~~~v~~IV-~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~ 190 (265)
..+.++.-+ +||++...|.-|.+|.+++-...-+.+-...-.
T Consensus 173 ~~r~vr~~v~~~~~~~yveaAr~~Gas~~~Ii~~~iLP~~~p~ 215 (296)
T PRK15111 173 MVRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAG 215 (296)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHcCCCHHHHHHHHHHHhhHHH
Confidence 444566655 689999999999999999766655555444333
No 37
>PF07988 LMSTEN: LMSTEN motif; InterPro: IPR012642 Proteins containing the Wos2 domain are involved in the regulation of the cell cycle [] and are Myb-related transcriptional activators. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2AGH_A 1SB0_B.
Probab=40.69 E-value=16 Score=23.63 Aligned_cols=10 Identities=40% Similarity=0.760 Sum_probs=6.3
Q ss_pred HHHHHhHHHH
Q psy7369 158 YEKQERLKEM 167 (265)
Q Consensus 158 ~EKE~~lkE~ 167 (265)
-|||+|+||+
T Consensus 24 pdkekrikel 33 (48)
T PF07988_consen 24 PDKEKRIKEL 33 (48)
T ss_dssp ---HHHHHHH
T ss_pred hhHHHHHHHH
Confidence 3799999986
No 38
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC. This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=39.83 E-value=1.8e+02 Score=25.49 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=30.1
Q ss_pred HHHHHHHHHHH-HHHhHHHHhhhcCCcchHHHHHHHHHHHHHHH
Q psy7369 149 CSMICKSIVYE-KQERLKEMMRVMGLSNGVHWTAWFIDSIVVMI 191 (265)
Q Consensus 149 v~~~v~~IV~E-KE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~l 191 (265)
....++..+.| |++...|.-|.+|.+++-.+.-+.+=...-.+
T Consensus 139 ~~r~~r~~~~~~~~~~~veaA~~~G~s~~~ii~~~ilP~~~p~i 182 (258)
T TIGR02790 139 YARMVRGMVVSLKQREFVLAARTSGASHWQIIRRHILPNILSPI 182 (258)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHcCCChhhhHHHHhHHhhHHHH
Confidence 45566666644 78889999999999997766666554443333
No 39
>TIGR01097 PhnE phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context).
Probab=37.49 E-value=1.5e+02 Score=25.72 Aligned_cols=35 Identities=17% Similarity=0.007 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHH
Q psy7369 146 VFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWT 180 (265)
Q Consensus 146 l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wl 180 (265)
........+...+|.+++..|..+++|.+.+..+.
T Consensus 138 ~~~~~~~~~~~l~~i~~~~~eaa~~~Gas~~q~~~ 172 (250)
T TIGR01097 138 VGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIR 172 (250)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHcCCCHHHHhH
Confidence 44556677888999999999999999998855543
No 40
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional
Probab=37.34 E-value=2e+02 Score=25.37 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHH
Q psy7369 146 VFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAV 195 (265)
Q Consensus 146 l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~i 195 (265)
.+|...-+.+-++|.++...|..+.+|.+++..+.-..+-..+-.+++.+
T Consensus 136 ~~p~~~~~~~g~~~i~~~~v~~Ar~~G~s~~~i~~~v~lP~alp~i~t~~ 185 (263)
T PRK11365 136 LFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGV 185 (263)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHcCCCHHHHHHHHhHHhhHHHHHHHH
Confidence 34544345677899999999999999999988887777766666655543
No 41
>PRK10913 dipeptide transporter; Provisional
Probab=37.23 E-value=2.4e+02 Score=25.58 Aligned_cols=41 Identities=10% Similarity=0.055 Sum_probs=29.9
Q ss_pred HHHHHHHHH-HHHHHHhHHHHhhhcCCcchHHHHHHHHHHHH
Q psy7369 148 ACSMICKSI-VYEKQERLKEMMRVMGLSNGVHWTAWFIDSIV 188 (265)
Q Consensus 148 ~v~~~v~~I-V~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i 188 (265)
.+.++++.- .+||++..-|.-+.+|++++-...-+.+-...
T Consensus 175 ~~ar~~r~~~l~~~~~~yV~aAra~G~s~~~Ii~rhilPn~~ 216 (300)
T PRK10913 175 HYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCL 216 (300)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCCChHHhHHHHHHHhhH
Confidence 345556555 68999999999999999997666555554443
No 42
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=37.12 E-value=1.5e+02 Score=33.06 Aligned_cols=89 Identities=10% Similarity=-0.083 Sum_probs=46.8
Q ss_pred HHHHHHhHHHHhhhcC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecC--ChhHHHHHHHHHHHHHHHHH
Q psy7369 157 VYEKQERLKEMMRVMG-LSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYN--DSATAENDAFLRMDNNTLWA 233 (265)
Q Consensus 157 V~EKE~~lkE~mkiMG-L~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s--~~~vlf~~~~l~~~~~~~~~ 233 (265)
..||.-=.||. ..| .+.++|.+|-.+..+-..++.+++..++..+- .=++.+ .+++.++..++..++..+++
T Consensus 476 ~~eR~i~~re~--~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm---~gl~~~~~~Ff~f~l~~~l~~~~~~~~~ 550 (1394)
T TIGR00956 476 YEARPIVEKHR--KYALYHPSADAIASIISEIPFKIIESVVFNIILYFM---VNFRRTAGRFFFYLLILFICTLAMSHLF 550 (1394)
T ss_pred HhcCcceeeec--cccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEc---CCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554444443 334 46688888888888777777777777666551 112222 12222222233333333332
Q ss_pred H---HhcCCCcccccccceE
Q psy7369 234 L---INFTQPGYDKLKPTLT 250 (265)
Q Consensus 234 ~---sfF~~~r~a~~~~~~~ 250 (265)
. +++.+...|...+++.
T Consensus 551 ~~i~a~~~~~~~A~~~~~~~ 570 (1394)
T TIGR00956 551 RSIGAVTKTLSEAMTPAAIL 570 (1394)
T ss_pred HHHHHhcCCHHHHHHHHHHH
Confidence 2 6667777777666653
No 43
>PRK10417 nikC nickel transporter permease NikC; Provisional
Probab=35.11 E-value=2.6e+02 Score=24.84 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=31.0
Q ss_pred HHHHHHHHHH-HHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHH
Q psy7369 149 CSMICKSIVY-EKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMII 192 (265)
Q Consensus 149 v~~~v~~IV~-EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li 192 (265)
...+++..+. +|++..-|.-|.+|.+++-...-+.+-...-.++
T Consensus 144 ~ar~~r~~~~~~~~~~yv~aAra~G~s~~~i~~~hiLP~~~p~ii 188 (272)
T PRK10417 144 YARMVRSLVISLRQREFVLAARLSGAGHVRVFIDHLLPAVIPQLL 188 (272)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHcCCCchhhHHHHhHHhhHHHHH
Confidence 3445565544 5889999999999999987776666655544443
No 44
>PRK10971 sulfate/thiosulfate transporter subunit; Provisional
Probab=34.41 E-value=2.7e+02 Score=24.56 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 149 CSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 201 (265)
Q Consensus 149 v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil 201 (265)
....++...++.++++.|.-+++|.+.+-.+.-..+=...-.+++..++.+..
T Consensus 155 ~~~~~~~~l~~i~~~l~eaA~~~Gas~~~~~~~i~lP~l~p~i~~~~~l~f~~ 207 (277)
T PRK10971 155 VVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTR 207 (277)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcCCCHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44556677788999999999999999988777776666666666555555443
No 45
>TIGR01581 Mo_ABC_porter NifC-like ABC-type porter. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Probab=32.59 E-value=2.9e+02 Score=23.28 Aligned_cols=58 Identities=9% Similarity=0.062 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7369 146 VFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVC 203 (265)
Q Consensus 146 l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~ 203 (265)
+......++.-.++-.+.+.|..+++|.+.+-.+.-..+=...-.++..+++++....
T Consensus 115 ~p~~~~~~~~~l~~i~~~~~eaA~~~Gas~~~~~~~v~lP~~~p~i~~~~~l~f~~~~ 172 (225)
T TIGR01581 115 SPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARAL 172 (225)
T ss_pred hHHHHHHHHHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3344456777777778999999999999998888766665555555555555544433
No 46
>PRK10782 DL-methionine transporter permease subunit; Provisional
Probab=31.12 E-value=2.5e+02 Score=23.64 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHH
Q psy7369 148 ACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITA 194 (265)
Q Consensus 148 ~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ 194 (265)
.....++.-.+|-++++.|..+..|.+.+-.+.-..+-...-.+++.
T Consensus 103 ~~~~~~~~~l~~v~~~~~eaA~~~G~s~~~~~~~vilP~~~p~i~~~ 149 (217)
T PRK10782 103 FIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNA 149 (217)
T ss_pred HHHHHHHHHHHhCCccHHHHHHHcCCCHHHHhHHhhHHhhHHHHHHH
Confidence 44556667777778899999999999998777666555544444333
No 47
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=30.96 E-value=4.1e+02 Score=24.21 Aligned_cols=42 Identities=7% Similarity=0.196 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHH
Q psy7369 136 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVH 178 (265)
Q Consensus 136 ~~~~~~~l~~l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~ 178 (265)
.+..++.++.+..+.+.++--+.||. +-=+.||.+|-+++-.
T Consensus 184 ~l~~ll~~~~~~~i~Ntirl~i~~Rr-~EI~im~lvGAt~~~I 225 (309)
T TIGR00439 184 FLSVLMGMAVFLVIGNSIRLQILSRR-ESIEVTKLLGATDSFI 225 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHH
Confidence 33444555555567778888888985 4557899999998433
No 48
>PF11677 DUF3273: Protein of unknown function (DUF3273); InterPro: IPR021691 Some members in this family of proteins are annotated as multi-transmembrane proteins however this cannot be confirmed. Currently this family has no known function.
Probab=29.91 E-value=4.2e+02 Score=23.92 Aligned_cols=80 Identities=9% Similarity=0.111 Sum_probs=43.5
Q ss_pred CCCCCcceeeeecCCCccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH--H-HHhHHHHhhhcCCcchHHHHHHH
Q psy7369 107 GRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYE--K-QERLKEMMRVMGLSNGVHWTAWF 183 (265)
Q Consensus 107 ~~~~~~~v~~~~fP~p~~~~~~f~~~~~~~~~~~~~l~~l~~v~~~v~~IV~E--K-E~~lkE~mkiMGL~~~~~wlSW~ 183 (265)
|......-.++.+|.....++++...+.....++++=+......+ .++.+ | -+|.|..=|+++.....--+||.
T Consensus 46 Gg~glf~Fdl~~~pe~~~~~~~~~~~~~~~~~~yliGtl~l~~Fq---~l~aDDsk~~RGyRaGsKiL~~At~ld~is~~ 122 (265)
T PF11677_consen 46 GGLGLFSFDLHALPETVRVSQSFHLSVAFFSGIYLIGTLYLMSFQ---VLVADDSKWARGYRAGSKILRQATFLDLISSI 122 (265)
T ss_pred CCceEEEEEcccCCcccccCCchHHHHHHHHHHHHHHHHHHHHHH---hhcCCchhHhhhhhhHhHHHHHHHHHHHHHHH
Confidence 333333334677777445555555444444443332222222111 22222 2 36789999999998888888887
Q ss_pred HHHHHH
Q psy7369 184 IDSIVV 189 (265)
Q Consensus 184 l~~~i~ 189 (265)
+.....
T Consensus 123 L~~v~~ 128 (265)
T PF11677_consen 123 LRFVFY 128 (265)
T ss_pred HHHHHH
Confidence 755443
No 49
>TIGR01183 ntrB nitrate ABC transporter, permease protein. This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB.
Probab=29.76 E-value=3.5e+02 Score=22.95 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHH
Q psy7369 147 FACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAV 195 (265)
Q Consensus 147 ~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~i 195 (265)
+|...-+..=+++=++++.|..+.+|.+++..+..=.+=...-++++.+
T Consensus 94 ~pi~~~~~~g~~~v~~~l~e~a~~~g~s~~~~~~~V~lP~a~P~i~~gl 142 (202)
T TIGR01183 94 WPIIINTAVGVQQIPQDYNNVARVLKLSKSDYFLKVLLPAAVPYIFTGL 142 (202)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHcCCCHHHHHHHHHHHhhHHHHHHHH
Confidence 4444445566677788999999999999987776655555554444444
No 50
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=29.52 E-value=2.2e+02 Score=22.79 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 177 VHWTAWFIDSIVVMIITAVLLSLLLV 202 (265)
Q Consensus 177 ~~wlSW~l~~~i~~li~~ii~~iil~ 202 (265)
.+-..-++...+..++.++++++++|
T Consensus 136 ~~~~~~~~~~l~~G~i~sli~a~i~k 161 (163)
T PF13858_consen 136 SLAFSGFISNLIFGFIISLIIALILK 161 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334556666666666666666554
No 51
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=29.30 E-value=2.6e+02 Score=22.09 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=30.4
Q ss_pred hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecCChhHHHHHHHHHH
Q psy7369 170 VMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRM 226 (265)
Q Consensus 170 iMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s~~~vlf~~~~l~~ 226 (265)
+--++.-..++-|-+.......+.+.+.++.+.. +.++ +-+........|..+
T Consensus 52 l~~L~rR~~li~~ai~~~~~s~ll~~l~i~~lf~---~~~~-~~~~~~~~~~lF~~a 104 (130)
T PF11026_consen 52 LRILRRRARLIRRAITLATLSALLVCLVILLLFL---SALL-SIDLSWLVAILFVLA 104 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-ccchHHHHHHHHHHH
Confidence 3345667788888888877777766666555554 2333 344444443333333
No 52
>PRK11146 outer membrane-specific lipoprotein transporter subunit LolE; Provisional
Probab=28.59 E-value=4.9e+02 Score=24.25 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHH
Q psy7369 149 CSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMI 191 (265)
Q Consensus 149 v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~l 191 (265)
+...+...|.||. |-=-.||.+|.++.....-.+.-.+++.+
T Consensus 285 i~~t~~~~v~eR~-rEigilralG~~~~~I~~~~l~e~~~~~~ 326 (412)
T PRK11146 285 IVSTLVMAVKDKS-GDIAILRTLGAKDGLIRAIFVWYGLLAGL 326 (412)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 3344556678874 44567999999997555544444444433
No 53
>PRK15082 glutathione ABC transporter permease GsiD; Provisional
Probab=28.51 E-value=3.6e+02 Score=24.37 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=28.8
Q ss_pred HHHHHHHHHHH-HHHHhHHHHhhhcCCcchHHHHHHHHHHHHH
Q psy7369 148 ACSMICKSIVY-EKQERLKEMMRVMGLSNGVHWTAWFIDSIVV 189 (265)
Q Consensus 148 ~v~~~v~~IV~-EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~ 189 (265)
.....+|.-+. +|++..-|.-+.+|.+++-.+.-+.+-...-
T Consensus 176 ~~~r~vR~~~~~~~~~~yV~aAra~G~s~~~il~rhiLPn~~p 218 (301)
T PRK15082 176 AFARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVS 218 (301)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHcCCChhhhhHHHhHHhhHH
Confidence 34455555444 6888899999999999977666655544433
No 54
>PRK10160 taurine transporter subunit; Provisional
Probab=28.14 E-value=3.1e+02 Score=24.37 Aligned_cols=50 Identities=14% Similarity=0.029 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHH
Q psy7369 147 FACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVL 196 (265)
Q Consensus 147 ~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii 196 (265)
+|+...+..-+++-++++.|..+.+|.+++-.+.-..+-...-.+++.+.
T Consensus 155 ~p~~~~~~~g~~~v~~~~~e~A~~~G~s~~~~~~~v~lP~alp~i~~~l~ 204 (275)
T PRK10160 155 APVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLR 204 (275)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHHHHhhhHhhHHHHHHHHH
Confidence 44444455556665678999999999999887766666555554444433
No 55
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=27.95 E-value=4.2e+02 Score=23.34 Aligned_cols=77 Identities=12% Similarity=0.012 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cc-------------eeecCChhHH
Q psy7369 153 CKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDF-NK-------------IVPYNDSATA 218 (265)
Q Consensus 153 v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~-~~-------------vf~~s~~~vl 218 (265)
++.+-.|-++-++|.=+ +..+.--|..|+-..+...+.+.++++++..+..+ +. ....|..++-
T Consensus 122 i~k~r~e~~~ml~evK~--~~E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~ 199 (230)
T PF03904_consen 122 IKKVREENKSMLQEVKQ--SHEKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWT 199 (230)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHH
Confidence 44445666666666322 55566678888888888777776666666544211 12 3345777788
Q ss_pred HHHHHHHHHHHHH
Q psy7369 219 ENDAFLRMDNNTL 231 (265)
Q Consensus 219 f~~~~l~~~~~~~ 231 (265)
+++|++|++--+.
T Consensus 200 ~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 200 YLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHhhHHHH
Confidence 8889888877544
No 56
>KOG0500|consensus
Probab=27.67 E-value=1.9e+02 Score=28.45 Aligned_cols=67 Identities=15% Similarity=0.227 Sum_probs=46.5
Q ss_pred ecCCCccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH------HHHHHhHHHHhhhcCCcch--HHHHHHHH
Q psy7369 118 QFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIV------YEKQERLKEMMRVMGLSNG--VHWTAWFI 184 (265)
Q Consensus 118 ~fP~p~~~~~~f~~~~~~~~~~~~~l~~l~~v~~~v~~IV------~EKE~~lkE~mkiMGL~~~--~~wlSW~l 184 (265)
+-|.|....+..+.++..+.+++++...+..+..++.++- ++|=.|+|.+|+.=+++.. ..-+.||-
T Consensus 200 e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfd 274 (536)
T KOG0500|consen 200 EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFD 274 (536)
T ss_pred CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4577776665555666777777777766666666666554 4556899999999998873 45566664
No 57
>PRK09881 D-ala-D-ala transporter subunit; Provisional
Probab=27.29 E-value=2e+02 Score=26.02 Aligned_cols=37 Identities=8% Similarity=0.031 Sum_probs=26.8
Q ss_pred HHHHHHH-HHHHHHHHhHHHHhhhcCCcchHHHHHHHH
Q psy7369 148 ACSMICK-SIVYEKQERLKEMMRVMGLSNGVHWTAWFI 184 (265)
Q Consensus 148 ~v~~~v~-~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l 184 (265)
...++++ .+.+||++..-|.-|.+|.+++-...-+.+
T Consensus 170 ~~~r~vr~~~l~~~~~~yVeaAra~G~s~~~ii~~hiL 207 (296)
T PRK09881 170 FYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHIL 207 (296)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCcCcceeeehhhH
Confidence 3455565 456889999999999999998655544443
No 58
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=27.20 E-value=6.1e+02 Score=24.90 Aligned_cols=63 Identities=25% Similarity=0.300 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 136 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLL 200 (265)
Q Consensus 136 ~~~~~~~l~~l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~ii 200 (265)
.+.++=+++-.+++..++|-+-+|||.| -|.+..-+++.+ +|++-++...+.....+.+++++
T Consensus 352 lfsIisil~a~~~V~~vlkl~geEr~nr-~eal~a~~vsR~-~vl~syl~~all~~~l~tllAl~ 414 (536)
T COG3559 352 LFSIISILAAAFAVSLVLKLHGEERGNR-AEALLAGAVSRT-HVLASYLAMALLGSALATLLALV 414 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhcch-HHHHHhcchhhh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566777888888999999865 577778888865 45555554445555555554444
No 59
>TIGR02213 lolE_release lipoprotein releasing system, transmembrane protein LolE. This protein is part of an unusual ABC transporter complex that releases lipoproteins from the periplasmic side of the bacterial inner membrane, rather than transport any substrate across the inner membrane. In some species, the permease-like transmembrane protein is represented by two paralogs, LolC and LolE, both in the LolCDE complex. This family consists of LolE, as found in E. coli and related species.
Probab=26.47 E-value=5.3e+02 Score=24.03 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHH
Q psy7369 150 SMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMII 192 (265)
Q Consensus 150 ~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li 192 (265)
...+...+.||. |---.||.+|.++.....-...-..++.++
T Consensus 285 ~~~~~~~v~eR~-~ei~~l~alG~~~~~i~~~~~~e~~~l~~~ 326 (411)
T TIGR02213 285 VSTLIMAVKDKQ-GDIAILRTLGANDGLIKRIFVWYGLQAGMK 326 (411)
T ss_pred HHHHHHHHHHHH-HHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 334566677874 344578999999975555444444444333
No 60
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.21 E-value=87 Score=22.54 Aligned_cols=33 Identities=12% Similarity=0.254 Sum_probs=25.0
Q ss_pred HHHHH-HhcCCCcccccccceE-EEEEeeecCccc
Q psy7369 230 TLWAL-INFTQPGYDKLKPTLT-YSIRGNCNCNTL 262 (265)
Q Consensus 230 ~~~~~-sfF~~~r~a~~~~~~~-~~~~~~~~~~~~ 262 (265)
..++. --|+|.-++|..+++. .-|..-|+|.+-
T Consensus 16 ~gMsiG~I~krk~I~GSCGGi~alGi~K~CdC~~p 50 (77)
T COG2991 16 AGMSIGYIFKRKSIKGSCGGIAALGIEKVCDCDEP 50 (77)
T ss_pred HHHhHhhheeccccccccccHHhhccchhcCCCCc
Confidence 33444 5678888999999988 678888998753
No 61
>COG1422 Predicted membrane protein [Function unknown]
Probab=24.60 E-value=1.8e+02 Score=25.13 Aligned_cols=51 Identities=10% Similarity=0.165 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHhhhcCC-cchHHHHHHHHHH
Q psy7369 136 TFPLFMVLSWVFACSMICKSIVYEKQER----------LKEMMRVMGL-SNGVHWTAWFIDS 186 (265)
Q Consensus 136 ~~~~~~~l~~l~~v~~~v~~IV~EKE~~----------lkE~mkiMGL-~~~~~wlSW~l~~ 186 (265)
+-|.+.....+.++..-++..+.+=+.. +++-+...++ ++..+|+.|++.+
T Consensus 122 fkPM~~~~v~tI~~F~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gWi~WYfLc 183 (201)
T COG1422 122 FKPMLYISVLTIPFFAWLRWFVGTGGYLVSEPNMALPTLFHILYHTAVFGDFLGWIGWYFLC 183 (201)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHccCcccccCccchhHHhhhhhhhccccccchHHHHHHHHH
Confidence 3465555555555555566666555544 4566667776 7788888887633
No 62
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=24.37 E-value=3e+02 Score=20.38 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=25.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHhhhcC
Q psy7369 129 FIKAVSKTFPLFMVLSWVFACSMICK---SIVYEKQERLKEMMRVMG 172 (265)
Q Consensus 129 f~~~~~~~~~~~~~l~~l~~v~~~v~---~IV~EKE~~lkE~mkiMG 172 (265)
|.-++..++.+++.+.|+..+.++-+ ..-.||+++-|-++.-.+
T Consensus 36 FvLVic~~lVfVii~lFi~ll~~i~~~~e~~~~~~~~~~~~~l~Nld 82 (84)
T PF06143_consen 36 FVLVICCFLVFVIIVLFILLLYNINKNAEQDRAERQQREKTYLANLD 82 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 44466666556555555555544433 345577777777765444
No 63
>PF14163 SieB: Superinfection exclusion protein B
Probab=23.09 E-value=3.3e+02 Score=21.79 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=27.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH---------HHHhHHHHhhhcCCcc
Q psy7369 134 SKTFPLFMVLSWVFACSMICKSIVYE---------KQERLKEMMRVMGLSN 175 (265)
Q Consensus 134 ~~~~~~~~~l~~l~~v~~~v~~IV~E---------KE~~lkE~mkiMGL~~ 175 (265)
+.++++.+++|..|.+.+++..+..| |++++++.++-+--.+
T Consensus 33 ~~~i~~~fl~s~s~li~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~Lt~~E 83 (151)
T PF14163_consen 33 QPWIGLIFLFSVSYLIAQLLSFIYKEAKDRYQRKRKKKKIEKKLNSLTPEE 83 (151)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 45677778888888888888888665 3445555544443333
No 64
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=23.07 E-value=8.1e+02 Score=24.95 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=17.3
Q ss_pred hhhcCCcchHHHHHHHHHHHHHHHH
Q psy7369 168 MRVMGLSNGVHWTAWFIDSIVVMII 192 (265)
Q Consensus 168 mkiMGL~~~~~wlSW~l~~~i~~li 192 (265)
.|++|.+.+.-|.--+.......++
T Consensus 198 ~rL~G~s~~~I~~~~l~~~~~~~~l 222 (679)
T TIGR01654 198 YRLNGFSLRKILFRLFSKNCTYLLI 222 (679)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 5789999988887766655443333
No 65
>PRK09421 modB molybdate ABC transporter permease protein; Reviewed
Probab=22.41 E-value=4.8e+02 Score=22.07 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 149 CSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLL 200 (265)
Q Consensus 149 v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~ii 200 (265)
....++.-.++-++++.|.-+.+|.+.+-.+.-..+-...-.+++..++...
T Consensus 107 ~~~~~~~~l~~i~~~~~eaA~~~G~s~~~~~~~I~lP~~~p~i~~~~~l~f~ 158 (229)
T PRK09421 107 MVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFA 158 (229)
T ss_pred HHHHHHHHHHhCChHHHHHHHHcCCChhhhhhhhhhHhhHHHHHHHHHHHHH
Confidence 3445666677778899999999999998777665555554455554444433
Done!