Query psy7369
Match_columns 265
No_of_seqs 171 out of 755
Neff 7.3
Searched_HMMs 29240
Date Sat Aug 17 00:56:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7369.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7369hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sb0_B Protein C-MYB; CREB-bin 24.0 22 0.00075 19.2 0.5 8 160-167 1-8 (26)
2 3tui_A D-methionine transport 23.7 1.8E+02 0.0063 22.5 6.5 52 147-198 102-153 (217)
3 1f6f_A Placental lactogen; 4-h 14.3 1.7E+02 0.0058 23.8 4.1 19 138-156 86-104 (199)
4 4gnt_B Carbohydrate-responsive 13.0 1.2E+02 0.004 16.2 1.7 12 176-187 8-19 (26)
5 2l8s_A Integrin alpha-1; trans 11.5 1.5E+02 0.0051 19.1 2.3 7 235-241 34-40 (54)
6 2rdd_B UPF0092 membrane protei 11.3 2.6E+02 0.0089 16.1 3.6 13 136-148 6-18 (37)
7 3ggz_E Vacuolar protein-sortin 9.4 1.3E+02 0.0044 16.9 1.2 16 156-171 12-27 (29)
8 1qp6_A Protein (alpha2D); de n 9.0 1.3E+02 0.0045 16.9 1.1 13 157-169 3-15 (35)
9 2qfz_A TBC1 domain family memb 8.3 3E+02 0.01 23.7 4.0 45 150-194 217-261 (345)
10 2elk_A SPCC24B10.08C protein; 6.8 5E+02 0.017 16.1 3.5 23 158-180 14-36 (58)
No 1
>1sb0_B Protein C-MYB; CREB-binding protein, transcriptional activation, constitutive activation, LXXLL motif, KIX; NMR {Mus musculus} PDB: 2agh_A
Probab=23.98 E-value=22 Score=19.22 Aligned_cols=8 Identities=50% Similarity=0.966 Sum_probs=5.7
Q ss_pred HHHhHHHH
Q psy7369 160 KQERLKEM 167 (265)
Q Consensus 160 KE~~lkE~ 167 (265)
||+|+||+
T Consensus 1 kEkriKEl 8 (26)
T 1sb0_B 1 KEKRIKEL 8 (26)
T ss_dssp CHHHHHHH
T ss_pred CchHHHHH
Confidence 57778875
No 2
>3tui_A D-methionine transport system permease protein ME; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} SCOP: f.58.1.1 PDB: 3dhw_A* 3tuj_A 3tuz_A*
Probab=23.70 E-value=1.8e+02 Score=22.52 Aligned_cols=52 Identities=13% Similarity=0.101 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 147 FACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS 198 (265)
Q Consensus 147 ~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~ 198 (265)
......++.-.++..+.+.|.-+..|.+.+-.+.-..+=...-.+++.+.+.
T Consensus 102 ~~~~~~~~~~l~~i~~~~~eaA~~~Gas~~~~~~~i~lP~~~p~i~~~~~~~ 153 (217)
T 3tui_A 102 PFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATIT 153 (217)
T ss_dssp HHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHHHHHhHHhhHHHHHHHHHHH
Confidence 3444556666777888999999999999988776666655544444444433
No 3
>1f6f_A Placental lactogen; 4-helical bundle, alpha helical bundle, ternary complex, FN III domains, beta sheet domains, cytokine-receptor complex; 2.30A {Ovis aries} SCOP: a.26.1.1
Probab=14.32 E-value=1.7e+02 Score=23.83 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy7369 138 PLFMVLSWVFACSMICKSI 156 (265)
Q Consensus 138 ~~~~~l~~l~~v~~~v~~I 156 (265)
.+-++-+|..|+.+++..+
T Consensus 86 ~l~Ll~sW~~PL~~L~~~~ 104 (199)
T 1f6f_A 86 VISLLHSWDEPLHHAVTEL 104 (199)
T ss_dssp HHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445677888888877765
No 4
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=13.04 E-value=1.2e+02 Score=16.19 Aligned_cols=12 Identities=33% Similarity=1.113 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHH
Q psy7369 176 GVHWTAWFIDSI 187 (265)
Q Consensus 176 ~~~wlSW~l~~~ 187 (265)
.+.|-+|++-+.
T Consensus 8 naiwrawyiqyv 19 (26)
T 4gnt_B 8 NAIWRAWYIQYV 19 (26)
T ss_dssp HHHHHHHHHHHT
T ss_pred hHHHHHHHHHHH
Confidence 578999998663
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=11.49 E-value=1.5e+02 Score=19.14 Aligned_cols=7 Identities=29% Similarity=0.202 Sum_probs=3.9
Q ss_pred HhcCCCc
Q psy7369 235 INFTQPG 241 (265)
Q Consensus 235 sfF~~~r 241 (265)
.||+|.|
T Consensus 34 GFFKR~~ 40 (54)
T 2l8s_A 34 GFFKRPL 40 (54)
T ss_dssp HHTTSCC
T ss_pred CcccCCC
Confidence 5565554
No 6
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=11.31 E-value=2.6e+02 Score=16.11 Aligned_cols=13 Identities=8% Similarity=-0.013 Sum_probs=6.4
Q ss_pred hhhHHHHHHHHHH
Q psy7369 136 TFPLFMVLSWVFA 148 (265)
Q Consensus 136 ~~~~~~~l~~l~~ 148 (265)
++|++++++.+|.
T Consensus 6 ~l~~v~~~~ifYF 18 (37)
T 2rdd_B 6 ILMLVVFGLIFYF 18 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554444
No 7
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=9.44 E-value=1.3e+02 Score=16.86 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=12.5
Q ss_pred HHHHHHHhHHHHhhhc
Q psy7369 156 IVYEKQERLKEMMRVM 171 (265)
Q Consensus 156 IV~EKE~~lkE~mkiM 171 (265)
+.+|||.++-|=++..
T Consensus 12 ~~eekEDkLAqRLRAL 27 (29)
T 3ggz_E 12 VDDEKEDKLAQRLRAL 27 (29)
T ss_pred ccchhhHHHHHHHHHH
Confidence 6789999998877653
No 8
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=9.02 E-value=1.3e+02 Score=16.94 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=9.4
Q ss_pred HHHHHHhHHHHhh
Q psy7369 157 VYEKQERLKEMMR 169 (265)
Q Consensus 157 V~EKE~~lkE~mk 169 (265)
|+|-|++.||+-|
T Consensus 3 veelekkfkelwk 15 (35)
T 1qp6_A 3 VEELEKKFKELWK 15 (35)
T ss_dssp SHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc
Confidence 5677888888754
No 9
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=8.35 E-value=3e+02 Score=23.72 Aligned_cols=45 Identities=7% Similarity=0.068 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHH
Q psy7369 150 SMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITA 194 (265)
Q Consensus 150 ~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ 194 (265)
......++.++.-++.+.++-.|+....|-..|+++-|.-.++.-
T Consensus 217 ~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~ 261 (345)
T 2qfz_A 217 VKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLR 261 (345)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHH
Confidence 345677888888999999999999999999999998887666543
No 10
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=6.82 E-value=5e+02 Score=16.13 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=16.4
Q ss_pred HHHHHhHHHHhhhcCCcchHHHH
Q psy7369 158 YEKQERLKEMMRVMGLSNGVHWT 180 (265)
Q Consensus 158 ~EKE~~lkE~mkiMGL~~~~~wl 180 (265)
.|-+.+|.++.+..|.++|.-..
T Consensus 14 ~eED~~L~~~v~~~G~~~W~~IA 36 (58)
T 2elk_A 14 ADEELLLIDACETLGLGNWADIA 36 (58)
T ss_dssp HHHHHHHHHHHHHTTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHCcCCHHHHH
Confidence 35566788888888887765543
Done!