Query psy7369
Match_columns 265
No_of_seqs 171 out of 755
Neff 7.3
Searched_HMMs 13730
Date Sat Aug 17 00:57:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7369.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7369hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dhwa1 f.58.1.1 (A:6-208) D-m 13.8 1.4E+02 0.0099 21.5 5.4 55 146-200 96-150 (203)
2 d2onkc1 f.58.1.1 (C:1-252) Mol 11.2 2.8E+02 0.021 20.3 8.0 55 149-203 143-197 (252)
3 d1xrsb2 d.230.4.1 (B:33-84) D- 10.7 79 0.0057 18.7 2.3 17 159-175 15-31 (52)
4 d1fkma2 a.69.2.1 (A:443-630) Y 10.2 74 0.0054 23.3 2.6 45 151-195 10-54 (188)
5 d1f6fb2 b.1.2.1 (B:101-203) Pr 9.8 53 0.0039 20.9 1.4 7 43-49 42-48 (103)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 9.2 1.3E+02 0.0096 15.1 3.5 17 224-240 9-26 (30)
7 d2bmfa1 c.37.1.14 (A:483-618) 8.4 1.1E+02 0.0083 21.7 2.8 29 155-186 42-70 (136)
8 d1j2jb_ a.7.8.1 (B:) ADP-ribos 6.3 70 0.0051 17.9 0.6 15 149-163 26-40 (41)
9 d1n26a3 b.1.2.1 (A:196-299) In 6.2 1.1E+02 0.008 19.2 1.7 16 242-257 65-80 (104)
10 d2czca2 c.2.1.3 (A:1-139,A:302 5.8 20 0.0015 26.6 -2.7 11 255-265 139-149 (172)
No 1
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=13.78 E-value=1.4e+02 Score=21.52 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369 146 VFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLL 200 (265)
Q Consensus 146 l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~ii 200 (265)
...+...++.-.++..+++.|.-|..|.+.+-.+.--.+=...-.+++...+...
T Consensus 96 ~p~~~~~~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~~p~i~~~~~~~~~ 150 (203)
T d3dhwa1 96 APFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLI 150 (203)
T ss_dssp HHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHcCCchhhhhHHhhHHHhHHHHHHHHHHHHH
Confidence 3344445666677777899999999999998777665555555555554444433
No 2
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=11.20 E-value=2.8e+02 Score=20.30 Aligned_cols=55 Identities=16% Similarity=0.045 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7369 149 CSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVC 203 (265)
Q Consensus 149 v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~ 203 (265)
...+.+.-.+.-.+++.|..+++|.+.+..+.--.+=...-.++.+.++..+...
T Consensus 143 ~~~~~~~~~~~i~~~~~eaA~~lGas~~~~~~~i~lP~~~p~i~~~~~l~~~~~~ 197 (252)
T d2onkc1 143 YINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGI 197 (252)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhHHHHHHHHhcCCCccccceEEEhHHhHHHHHHHHHHHHHHHH
Confidence 4445556666667889999999999998888766666665556665555555443
No 3
>d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=10.71 E-value=79 Score=18.71 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=12.7
Q ss_pred HHHHhHHHHhhhcCCcc
Q psy7369 159 EKQERLKEMMRVMGLSN 175 (265)
Q Consensus 159 EKE~~lkE~mkiMGL~~ 175 (265)
|-+.--|++++.|||.+
T Consensus 15 ~A~eAAk~la~kMGl~~ 31 (52)
T d1xrsb2 15 RSAEAAKQIALKMGLEE 31 (52)
T ss_dssp HHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 33456788999999876
No 4
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.17 E-value=74 Score=23.29 Aligned_cols=45 Identities=7% Similarity=-0.071 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHH
Q psy7369 151 MICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAV 195 (265)
Q Consensus 151 ~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~i 195 (265)
..+..++.++.-++-++++-.|+....|-.-|+++-+.-.+..-.
T Consensus 10 ~~l~~ll~~~dp~L~~hl~~~~i~~~~~~~rW~~~lf~~~~~~~~ 54 (188)
T d1fkma2 10 KNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGT 54 (188)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeeeeHHHHHHHhhccCCHHH
Confidence 456788999999999999999999999999999988766555433
No 5
>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.81 E-value=53 Score=20.89 Aligned_cols=7 Identities=29% Similarity=0.287 Sum_probs=3.2
Q ss_pred eEEEEec
Q psy7369 43 EEYKNSQ 49 (265)
Q Consensus 43 ~~YtIR~ 49 (265)
+.|.+|.
T Consensus 42 l~Y~v~~ 48 (103)
T d1f6fb2 42 MEYEIRL 48 (103)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 4454443
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.18 E-value=1.3e+02 Score=15.11 Aligned_cols=17 Identities=24% Similarity=0.295 Sum_probs=8.8
Q ss_pred HHHHHHHHHHH-HhcCCC
Q psy7369 224 LRMDNNTLWAL-INFTQP 240 (265)
Q Consensus 224 l~~~~~~~~~~-sfF~~~ 240 (265)
.|.+....|.+ .||+.|
T Consensus 9 ifac~i~lfffaiffrep 26 (30)
T d2axtt1 9 IFACIIALFFFAIFFREP 26 (30)
T ss_dssp HHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 34444444444 677665
No 7
>d2bmfa1 c.37.1.14 (A:483-618) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=8.40 E-value=1.1e+02 Score=21.66 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=22.0
Q ss_pred HHHHHHHHhHHHHhhhcCCcchHHHHHHHHHH
Q psy7369 155 SIVYEKQERLKEMMRVMGLSNGVHWTAWFIDS 186 (265)
Q Consensus 155 ~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~ 186 (265)
++..||-+..+|+|+.-.+. -||||-+..
T Consensus 42 RL~~E~RK~F~~Ll~~~D~p---~WLAw~VA~ 70 (136)
T d2bmfa1 42 RLRGEARKTFVDLMRRGDLP---VWLAYRVAA 70 (136)
T ss_dssp CCCHHHHHHHHHHHHTSCCC---HHHHHHHHH
T ss_pred ecChhhHHHHHHHHhhcCCc---hhhhHHHHH
Confidence 45678888889998877766 588887643
No 8
>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.34 E-value=70 Score=17.92 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHh
Q psy7369 149 CSMICKSIVYEKQER 163 (265)
Q Consensus 149 v~~~v~~IV~EKE~~ 163 (265)
.-.+++++|.|-|.|
T Consensus 26 ANrLIK~mVkedq~r 40 (41)
T d1j2jb_ 26 ANKLIKEMVQEDQKR 40 (41)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcc
Confidence 456788888887765
No 9
>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.20 E-value=1.1e+02 Score=19.22 Aligned_cols=16 Identities=6% Similarity=-0.072 Sum_probs=0.0
Q ss_pred ccccccceEEEEEeee
Q psy7369 242 YDKLKPTLTYSIRGNC 257 (265)
Q Consensus 242 ~a~~~~~~~~~~~~~~ 257 (265)
+.++.+.-.|.+|++|
T Consensus 65 i~~L~p~t~Y~~rVra 80 (104)
T d1n26a3 65 IHDAWSGLRHVVQLRA 80 (104)
T ss_dssp ESSCCTTCCEEEEEEE
T ss_pred ECCCCCCCEEEEEEEE
No 10
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=5.85 E-value=20 Score=26.64 Aligned_cols=11 Identities=27% Similarity=-0.164 Sum_probs=0.0
Q ss_pred eeecCcccccC
Q psy7369 255 GNCNCNTLAIA 265 (265)
Q Consensus 255 ~~~~~~~~~~~ 265 (265)
.+|||+|-++|
T Consensus 139 ~scsctTn~la 149 (172)
T d2czca2 139 VVIPENIDAIR 149 (172)
T ss_dssp CTHHHHHHHHH
T ss_pred EecCchHHHHH
Done!