RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7369
         (265 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 50/286 (17%), Positives = 94/286 (32%), Gaps = 76/286 (26%)

Query: 7   QYDRL-TDVT----GNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNSQ------MFGA-K 54
           Q DRL  D       N++R++   +  L         R  L E + ++      + G+ K
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQP--YLKL---------RQALLELRPAKNVLIDGVLGSGK 163

Query: 55  LMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFG--------FAYLQDMVEQSIIQEHT 106
              T +  D  +S +          ++   ++              LQ ++ Q I    T
Sbjct: 164 ---TWVALDVCLSYKV--QCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQ-IDPNWT 214

Query: 107 GRESTPGIVLQQFPYPCYIEDQFIKA--VSKTFP--LFMVL-----SWVF-ACSMICKSI 156
            R               +     ++    SK +   L +VL     +  + A ++ CK +
Sbjct: 215 SRSDHS----SNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNAFNLSCKIL 269

Query: 157 VYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFN--------- 207
           +     R K++   +  +   H +   +D   + +    + SLLL  +D           
Sbjct: 270 L---TTRFKQVTDFLSAATTTHIS---LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 208 KIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSI 253
              P   S  A     +R D    W   N+     DKL   +  S+
Sbjct: 324 TTNPRRLSIIA---ESIR-DGLATW--DNWKHVNCDKLTTIIESSL 363


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.0 bits (85), Expect = 0.006
 Identities = 30/157 (19%), Positives = 46/157 (29%), Gaps = 58/157 (36%)

Query: 25  FFTVL--QFFCGNTSARHTLEE----YKNSQMFGAKLMSTA------LIGDTYISDRFYT 72
              +   Q   GNT      EE    Y+   +    L+  +      LI  T  +++ +T
Sbjct: 156 LVAIFGGQ---GNTDD--YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210

Query: 73  --LD-------PRSRPLYD-LKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYP 122
             L+       P + P  D L  I                       S P I + Q    
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPI---------------------SCPLIGVIQL--A 247

Query: 123 CYIEDQFIKAVSKTFP--LFMVLSWVFACSMICKSIV 157
            Y+     K +  T P  L   L      S   + +V
Sbjct: 248 HYV--VTAKLLGFT-PGELRSYLKGATGHS---QGLV 278


>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM:
           PF02562, ST genomics, PSI-2, protein structure
           initiative; 2.35A {Corynebacterium glutamicum atcc
           13032}
          Length = 208

 Score = 29.5 bits (67), Expect = 0.75
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 74  DPRSRPLYDLKYITFGFAYLQDMVEQSII 102
           DP  RPL+D          +  ++E  I+
Sbjct: 80  DPYLRPLHDALRDMVEPEVIPKLMEAGIV 108


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 29.1 bits (65), Expect = 1.7
 Identities = 13/69 (18%), Positives = 18/69 (26%), Gaps = 15/69 (21%)

Query: 38   ARHTLEEYKNS----QMFGAKLMSTALIGDTYI---SDRFYT--------LDPRSRPLYD 82
                  EY       +    K     +I +          YT        LDP +R   D
Sbjct: 1467 TEDRYNEYVAKVSAREKSAYKFFHNGMIYNKLFVSKEHAPYTDELEEDVYLDPLARVSKD 1526

Query: 83   LKYITFGFA 91
             K  +  F 
Sbjct: 1527 KKSGSLTFN 1535


>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer,
           proton pumping, membrane protein, cell inner membrane,
           cell membrane, copper; HET: HEA LDA LMT; 2.25A
           {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
          Length = 298

 Score = 27.8 bits (62), Expect = 3.5
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 173 LSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAEN 220
           L++   W   F+  I+  +   V L LL+  + FN+      +    N
Sbjct: 56  LAHDQQWLDHFVLYIITAVTIFVCLLLLICIVRFNRRANPVPARFTHN 103


>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
           membrane protein, mitochondrial transport; HET: ACP LMT
           CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
          Length = 595

 Score = 27.2 bits (61), Expect = 7.1
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 173 LSNGVHWTAWFIDSIVVMIITAVLLSLLLVCI 204
           LS+G+   A     I +M   +  L+  ++ +
Sbjct: 140 LSDGLRAGAQASVGISMMFFVSPNLATFVLSV 171


>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide
           triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
          Length = 528

 Score = 27.0 bits (59), Expect = 7.5
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 189 VMIITAVLLSLLLVCIDFNKIVPYNDSATAEN-DAFLRMDNNTLWALINFTQPGYDKLK 246
            MI  A L +   + I       Y  S   ++ +A+ ++ +N    ++  T P     +
Sbjct: 286 TMITDAFLKADDYIEITGAGGKKYRISTAIDDMEAYTKLTDNIFLEILYSTDPKLKDAR 344


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0466    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,005,166
Number of extensions: 225213
Number of successful extensions: 425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 10
Length of query: 265
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 173
Effective length of database: 4,133,061
Effective search space: 715019553
Effective search space used: 715019553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.0 bits)