RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7369
         (265 letters)



>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase,
           small subunit C-terminal domain {Escherichia coli
           [TaxId: 562]}
          Length = 228

 Score = 26.3 bits (57), Expect = 3.4
 Identities = 12/60 (20%), Positives = 19/60 (31%)

Query: 123 CYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAW 182
                   + V K  P  + LS        C   +   Q+ L+  + V G+  G    A 
Sbjct: 66  IVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLAL 125


>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
           enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
          Length = 257

 Score = 26.2 bits (58), Expect = 4.2
 Identities = 4/19 (21%), Positives = 13/19 (68%)

Query: 127 DQFIKAVSKTFPLFMVLSW 145
           D+F++AV+  + +  ++ +
Sbjct: 214 DEFMEAVTSRYGMNCLIQF 232


>d1n3ka_ a.77.1.4 (A:) PEA-15 (phosphoprotein enriched in
          astrocytes 15 kDa) {Chinese hamster (Cricetulus
          griseus) [TaxId: 10029]}
          Length = 130

 Score = 25.2 bits (55), Expect = 4.9
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 6/62 (9%)

Query: 1  MSDMAVQYDRLTDVTGNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNSQMFGAKLMSTAL 60
          M++       LT+   N+T  +      L+  C         EE      + + L S   
Sbjct: 1  MAEYGTLLQDLTN---NITLED---LEQLKSACKEDIPSEKSEEITTGSAWFSFLESHNK 54

Query: 61 IG 62
          + 
Sbjct: 55 LD 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0511    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 978,104
Number of extensions: 43347
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 10
Length of query: 265
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,254,276
Effective search space: 227023956
Effective search space used: 227023956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.3 bits)