Query psy7370
Match_columns 247
No_of_seqs 185 out of 810
Neff 7.7
Searched_HMMs 46136
Date Sat Aug 17 00:58:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01257 rim_protein retinal- 100.0 2.2E-44 4.7E-49 376.9 23.1 227 18-246 492-721 (2272)
2 PF12698 ABC2_membrane_3: ABC- 98.8 9.8E-09 2.1E-13 90.5 5.5 185 22-243 29-226 (344)
3 TIGR01257 rim_protein retinal- 98.5 5.8E-07 1.3E-11 97.0 10.6 112 134-245 1628-1747(2272)
4 KOG0059|consensus 98.2 1.5E-05 3.3E-10 80.9 13.0 109 133-245 256-365 (885)
5 COG1668 NatB ABC-type Na+ effl 92.9 0.66 1.4E-05 43.3 9.0 61 179-239 190-250 (407)
6 TIGR00025 Mtu_efflux ABC trans 89.8 2.9 6.3E-05 35.4 9.2 59 179-237 39-97 (232)
7 TIGR01248 drrC daunorubicin re 89.8 2.4 5.3E-05 33.7 8.2 50 194-243 7-56 (152)
8 TIGR01247 drrB daunorubicin re 89.0 3.9 8.4E-05 34.6 9.4 64 180-243 51-114 (236)
9 TIGR03518 ABC_perm_GldF glidin 88.9 4.1 8.9E-05 35.0 9.5 43 195-237 69-111 (240)
10 COG0842 ABC-type multidrug tra 82.1 11 0.00024 31.8 8.8 64 180-243 91-155 (286)
11 PF11298 DUF3099: Protein of u 81.7 3.7 7.9E-05 28.9 4.6 32 199-230 9-40 (73)
12 TIGR03861 phenyl_ABC_PedC alco 81.6 13 0.00027 31.9 9.0 62 180-241 63-124 (253)
13 PF03379 CcmB: CcmB protein; 76.1 19 0.00041 30.5 8.3 62 181-242 50-111 (215)
14 PF12730 ABC2_membrane_4: ABC- 75.9 24 0.00053 28.3 8.8 48 193-240 64-111 (232)
15 PF02687 FtsX: FtsX-like perme 75.8 28 0.0006 25.3 9.3 49 189-238 12-60 (121)
16 PF11455 DUF3018: Protein of 75.3 1.1 2.4E-05 30.8 0.4 24 200-223 1-24 (65)
17 cd06261 TM_PBP2 Transmembrane 72.5 23 0.00049 28.4 7.7 53 189-241 85-137 (190)
18 PRK11026 ftsX cell division AB 70.6 68 0.0015 28.7 10.9 42 179-221 184-225 (309)
19 TIGR01291 nodJ ABC-2 type tran 64.5 67 0.0015 27.5 9.4 61 178-238 59-121 (253)
20 TIGR01190 ccmB heme exporter p 64.0 54 0.0012 27.9 8.3 60 181-240 47-106 (211)
21 PF13346 ABC2_membrane_5: ABC- 61.3 73 0.0016 25.7 8.7 48 196-243 53-100 (206)
22 PF00528 BPD_transp_1: Binding 61.0 37 0.00081 26.6 6.7 55 185-239 61-115 (185)
23 PF09753 Use1: Membrane fusion 56.9 35 0.00075 29.5 6.2 43 197-247 209-251 (251)
24 COG4591 LolE ABC-type transpor 53.0 1.5E+02 0.0033 27.7 10.1 45 189-234 284-328 (408)
25 PRK10971 sulfate/thiosulfate t 52.5 85 0.0019 27.2 8.0 56 188-243 151-206 (277)
26 PRK15111 antimicrobial peptide 50.8 1.2E+02 0.0026 26.8 8.8 45 189-233 170-215 (296)
27 TIGR02790 nickel_nikC nickel A 48.9 1.3E+02 0.0028 26.0 8.5 43 191-233 138-181 (258)
28 PF12679 ABC2_membrane_2: ABC- 47.9 60 0.0013 27.6 6.3 44 189-232 80-123 (277)
29 TIGR01581 Mo_ABC_porter NifC-l 47.8 1.2E+02 0.0027 25.1 8.0 54 187-240 113-166 (225)
30 TIGR00439 ftsX putative protei 47.0 2.1E+02 0.0046 25.6 10.9 42 179-221 184-225 (309)
31 TIGR00955 3a01204 The Eye Pigm 45.4 1.9E+02 0.0041 28.5 10.0 49 195-245 411-460 (617)
32 PF13858 DUF4199: Protein of u 45.4 98 0.0021 24.4 6.8 26 220-245 136-161 (163)
33 PF01061 ABC2_membrane: ABC-2 44.5 3.4 7.4E-05 33.4 -2.0 46 198-243 72-118 (210)
34 PRK10913 dipeptide transporter 44.3 1.9E+02 0.0041 25.6 9.0 43 189-231 173-216 (300)
35 COG3559 TnrB3 Putative exporte 43.4 1.9E+02 0.0042 27.6 8.9 61 178-240 351-411 (536)
36 TIGR03062 pip_yhgE_Cterm YhgE/ 42.9 75 0.0016 26.0 5.9 60 179-243 25-84 (208)
37 PF07988 LMSTEN: LMSTEN motif; 42.5 15 0.00032 23.1 1.1 10 201-210 24-33 (48)
38 PRK11146 outer membrane-specif 42.5 2.7E+02 0.0059 25.5 10.7 36 194-230 287-322 (412)
39 PRK10417 nikC nickel transport 42.1 2E+02 0.0043 25.1 8.7 44 192-235 144-188 (272)
40 TIGR02213 lolE_release lipopro 40.7 2.9E+02 0.0063 25.3 10.7 37 195-232 287-323 (411)
41 PRK11365 ssuC alkanesulfonate 40.2 1.7E+02 0.0036 25.3 7.9 49 190-238 137-185 (263)
42 PRK15066 inner membrane transp 39.9 2.4E+02 0.0051 24.0 9.3 39 194-232 79-117 (257)
43 PRK10782 DL-methionine transpo 38.4 1.7E+02 0.0038 24.1 7.5 51 189-239 101-151 (217)
44 PF06143 Baculo_11_kDa: Baculo 38.2 1.5E+02 0.0033 21.4 6.5 45 172-216 36-83 (84)
45 PRK09421 modB molybdate ABC tr 38.1 1.6E+02 0.0034 24.6 7.3 53 188-240 103-155 (229)
46 TIGR01183 ntrB nitrate ABC tra 38.0 2.4E+02 0.0051 23.5 8.4 45 196-240 100-144 (202)
47 PF14163 SieB: Superinfection 38.0 1E+02 0.0022 24.3 5.7 29 174-202 30-58 (151)
48 TIGR01097 PhnE phosphonate ABC 37.4 1.6E+02 0.0034 25.0 7.2 35 189-223 138-172 (250)
49 PRK15082 glutathione ABC trans 36.0 2.7E+02 0.0059 24.6 8.7 42 189-230 174-216 (301)
50 PRK10814 outer membrane-specif 35.8 3.4E+02 0.0074 24.7 10.2 40 189-229 279-318 (399)
51 PF13197 DUF4013: Protein of u 35.5 2.3E+02 0.0049 22.6 7.6 36 205-240 128-163 (169)
52 PHA02692 hypothetical protein; 33.8 65 0.0014 22.4 3.3 46 193-246 24-69 (70)
53 PRK09174 F0F1 ATP synthase sub 33.0 1.5E+02 0.0032 24.9 6.1 17 196-212 78-94 (204)
54 PF00517 GP41: Retroviral enve 32.4 89 0.0019 26.3 4.7 33 194-226 119-154 (204)
55 PRK10160 taurine transporter s 32.2 2.5E+02 0.0054 24.5 7.7 47 191-237 156-202 (275)
56 TIGR02138 phosphate_pstC phosp 31.7 3.1E+02 0.0067 23.9 8.3 39 189-227 163-201 (295)
57 PRK09500 potC spermidine/putre 31.6 2.7E+02 0.0059 23.6 7.8 52 190-241 140-191 (256)
58 PRK09881 D-ala-D-ala transport 31.5 1.6E+02 0.0034 26.2 6.4 39 189-227 168-207 (296)
59 TIGR01185 devC DevC protein. T 31.4 4.1E+02 0.0089 24.3 10.4 40 195-235 279-318 (380)
60 PRK11268 pstA phosphate transp 29.4 3.1E+02 0.0067 24.1 7.9 50 191-240 167-216 (295)
61 PF15086 UPF0542: Uncharacteri 29.1 2.1E+02 0.0045 20.1 5.6 33 175-209 26-59 (74)
62 TIGR02139 permease_CysT sulfat 28.5 2E+02 0.0044 24.6 6.5 51 185-235 140-190 (265)
63 PLN03211 ABC transporter G-25; 28.0 3.2E+02 0.007 27.2 8.5 50 194-245 456-506 (659)
64 TIGR00974 3a0107s02c phosphate 27.9 3.9E+02 0.0084 22.9 8.3 39 189-227 140-178 (271)
65 TIGR03416 ABC_choXWV_perm chol 27.3 3.9E+02 0.0085 23.1 8.1 39 189-227 162-200 (267)
66 TIGR02212 lolCE lipoprotein re 26.9 4.7E+02 0.01 23.6 10.1 37 193-230 285-321 (411)
67 TIGR03141 cytochro_ccmD heme e 26.6 1.5E+02 0.0032 18.4 3.9 21 214-234 1-21 (45)
68 COG1422 Predicted membrane pro 26.5 1.6E+02 0.0035 24.8 5.1 50 179-228 122-182 (201)
69 PF05663 DUF809: Protein of un 25.6 95 0.002 23.1 3.2 6 221-226 38-43 (138)
70 PF13197 DUF4013: Protein of u 25.6 3.2E+02 0.007 21.6 6.8 45 198-242 115-162 (169)
71 KOG4232|consensus 25.5 2.3E+02 0.005 26.7 6.4 43 200-244 98-154 (430)
72 PF11696 DUF3292: Protein of u 24.6 3.4E+02 0.0074 27.1 7.7 79 157-244 78-156 (642)
73 TIGR03434 ADOP Acidobacterial 24.6 7.2E+02 0.016 24.9 10.7 30 193-223 697-726 (803)
74 PRK10952 glycine betaine trans 23.7 5.3E+02 0.011 23.6 8.5 45 191-235 222-266 (355)
75 PRK06369 nac nascent polypepti 23.7 59 0.0013 24.9 1.9 14 204-217 7-20 (115)
76 PF10192 GpcrRhopsn4: Rhodopsi 23.4 3.9E+02 0.0085 23.0 7.3 59 174-236 172-230 (257)
77 PF03672 UPF0154: Uncharacteri 23.3 2.5E+02 0.0055 19.2 5.5 16 204-219 34-49 (64)
78 COG2981 CysZ Uncharacterized p 22.5 1.8E+02 0.0039 25.3 4.8 29 211-239 56-87 (250)
79 PF03677 UPF0137: Uncharacteri 22.2 1.3E+02 0.0028 26.0 3.8 36 193-229 77-112 (243)
80 PHA02844 putative transmembran 21.3 1.6E+02 0.0036 20.6 3.5 46 193-245 24-70 (75)
81 PHA02677 hypothetical protein; 21.2 1.9E+02 0.0041 21.7 4.1 27 180-206 2-28 (108)
82 PHA02650 hypothetical protein; 20.5 1E+02 0.0022 22.0 2.4 32 193-228 24-55 (81)
83 PF01849 NAC: NAC domain; Int 20.4 32 0.0007 22.7 -0.1 15 204-218 1-15 (58)
No 1
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.2e-44 Score=376.92 Aligned_cols=227 Identities=35% Similarity=0.691 Sum_probs=206.7
Q ss_pred ccCCcceEEEEeecchHHHHHHhhhhcccccccCceeecCCHHHHHHHHHhhcCCCceEEEEEEcCCC--CCCCCCeeeE
Q psy7370 18 MEQAFFTVLQFFCGNTSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPG--YDKLKPTLTY 95 (247)
Q Consensus 18 ~~~~~~~~~~~y~~~~~~~~~i~~~~~~~~~~~~~~~~f~se~~m~~~~~~~~~~~~~~agVvF~~~~--~~~~p~~~~Y 95 (247)
++....+|+.+|.-++.+.+.+.++ ++|+.+|++++++||++|++.+.++.+.+.+||||+|+++. ..++|++++|
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~c~~~d~~~~~~~~~~~~~~~~~l~~~~~~~agI~F~~~~~~~~~~p~~v~y 569 (2272)
T TIGR01257 492 DDMTNFDWRDIFNITDRFLRLANQY--LECLVLDKFESYDDEVQLTQRALSLLEENRFWAGVVFPDMYPWTSSLPPHVKY 569 (2272)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHH--HHHeeccceecCCCHHHHHHHHHHHhhcCCeEEEEEeCCCcccccCCCCceEE
Confidence 4446788999999889999999999 99999999999999999999999998888899999997752 3468999999
Q ss_pred EEecCCCCCCc-cccccCCCCCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHhhCCCCCcceeeeecCCCcccchhHHH
Q psy7370 96 SIRMSTTLIGD-TYISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIK 174 (247)
Q Consensus 96 ~IR~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~Y~~~GFl~LQ~~Id~aii~~~~~~~~~~~v~~~~fP~p~~~~d~~~~ 174 (247)
+||||.+..++ +++.+.+|.+||+.++..|++|+++||++||++|++||++..++....+++++|+||||+|.+|.|..
T Consensus 570 ~IR~~~~~~~~t~~~~~~~w~~g~~~~~~~~~~Y~~~GFl~lQ~ai~~aii~~~~~~~~~~~v~~q~~P~P~y~~d~~l~ 649 (2272)
T TIGR01257 570 KIRMDIDVVEKTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGITRSQMQAEPPVGIYLQQMPYPCFVDDSFMI 649 (2272)
T ss_pred EEecCccccCcchhhccccccCCCCCCccccccHHHhhHHHHHHHHHHHHHHhhcCCCcccceeeeeCCCCCeeccHHHH
Confidence 99999987766 34567789999998877778999999999999999999999887555788999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy7370 175 AVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVI 246 (247)
Q Consensus 175 ~~~~~~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~il~~ 246 (247)
.++.++|++++++|++++..+++.||.|||+|+||+||||||++|+||+|||+.++++.++++++++++++.
T Consensus 650 ~~~~~~pl~~~la~~~~~~~lv~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~~ 721 (2272)
T TIGR01257 650 ILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMH 721 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999998887753
No 2
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=98.76 E-value=9.8e-09 Score=90.49 Aligned_cols=185 Identities=15% Similarity=0.205 Sum_probs=49.7
Q ss_pred cceEEEEeecc--hHHHHHHhhhhcccccccCceeecCCHHHHHHHHHhhcCCCceEEEEEEcCCCCCCC---CCeeeEE
Q psy7370 22 FFTVLQFFCGN--TSARHTLEEYKNNKCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKL---KPTLTYS 96 (247)
Q Consensus 22 ~~~~~~~y~~~--~~~~~~i~~~~~~~~~~~~~~~~f~se~~m~~~~~~~~~~~~~~agVvF~~~~~~~~---p~~~~Y~ 96 (247)
..+.+++.... +...+.+.+. ++.....+...++|++++++.+.+ ++.-+++++++....+. .+.-+++
T Consensus 29 ~~~~~v~vv~~~~~~~~~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~i~~~~~~~~~~~~~~~~~~ 102 (344)
T PF12698_consen 29 PSPIPVAVVDEDNSSLSKQLVQM--LSNSPNFDVVEYDSEEEAKDALKN----GKIDAIIVIPKNFSQDLLSSGESPNIT 102 (344)
T ss_dssp ---EEEEEEETT-SHHHCCCHHH--HCTSSCCEEEECS-HHHHHHHHHH----HT-SEEEEE-TTCCCHCH-TT--ECCE
T ss_pred CCCCeEEEEeCCCChHHHHHHHH--HhcCCCcceeeeCCHHHHHHHHHh----CCCcEEEEcCccccccccccCCcceEE
Confidence 44455665532 2444445554 322111125699999999988764 23457888866532110 0111111
Q ss_pred EecCCCCCCccccccCCCCCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHhhCCC--------CCcceeeeecCCCccc
Q psy7370 97 IRMSTTLIGDTYISDHFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRK--------STPGIVLQQFPYPCYI 168 (247)
Q Consensus 97 IR~~~~~~~~~~~~~~~~~~g~~~~~~~~~~Y~~~GFl~LQ~~Id~aii~~~~~~~--------~~~~v~~~~fP~p~~~ 168 (247)
+..+. .+ ....-.+|+.+++ +.+...+.. ....+..+..|.....
T Consensus 103 ~~~~~----------------------~~----~~~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (344)
T PF12698_consen 103 VYINS----------------------SN----PHSSQIIQNALSS-LLQQLNASSEGKSAIQSSNSPIPVESIPLSNPS 155 (344)
T ss_dssp EEESS----------------------SS----HHHHHHHHHHHHH-HHHHHHHCCCGCCCCHHHT--EEEEEEEECCCH
T ss_pred EEeec----------------------cc----chhhhhhhccccc-cchhhhhhhhhhhhhcccccccccccccccccc
Confidence 11111 01 0111566777777 655443211 1233444444432221
Q ss_pred chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7370 169 EDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLL 243 (247)
Q Consensus 169 ~d~~~~~~~~~~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~i 243 (247)
......+.++++.+.++..+......++.|||+|++|.|+++|++.+.+|++|++..+++.++.++++.++
T Consensus 156 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ek~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~i 226 (344)
T PF12698_consen 156 ----SSFASYLIPFILFFILLIGFSFIAMSIVEEKESGTRERLLSSGVSPWSYWLSKFLAYFLVSLIQSLIIIII 226 (344)
T ss_dssp ----HHCHTT-----------------------------------------------------------------
T ss_pred ----ccccccccccchhHHHHHHHHhhchhhhhHhhhhhhHhhhcccCCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22333455666666666666667889999999999999999999999999999999999999988777664
No 3
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.49 E-value=5.8e-07 Score=97.01 Aligned_cols=112 Identities=13% Similarity=0.223 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHhhCCCC-----CcceeeeecCCCcccchhH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 134 AYLQDMVEQSIIQEHTGRKS-----TPGIVLQQFPYPCYIEDQF---IKAVSKTFPLFMVLSWVFACAMICKSIVYEKQE 205 (247)
Q Consensus 134 l~LQ~~Id~aii~~~~~~~~-----~~~v~~~~fP~p~~~~d~~---~~~~~~~~~l~~~l~~~~~~~~~v~~IV~EKE~ 205 (247)
-..-+.+++|+++...+... .+.+...++|.+....... .......+++++++++.+....++..+|.|||.
T Consensus 1628 p~~lN~l~NaiLr~~~~~~~~~~~~~I~v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~asfv~~~V~ER~s 1707 (2272)
T TIGR01257 1628 VSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQERVN 1707 (2272)
T ss_pred HHHHHHHHHHHHHHhcccccCCccceEEEEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHheeeehHHhh
Confidence 45569999999998654321 3444555666554332111 112234567888889999999999999999999
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7370 206 RLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLV 245 (247)
Q Consensus 206 ~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~il~ 245 (247)
|.|..+.++|++..+||+|.|++.++.++++++++++++.
T Consensus 1708 kaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~ 1747 (2272)
T TIGR01257 1708 KAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFI 1747 (2272)
T ss_pred hHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888876653
No 4
>KOG0059|consensus
Probab=98.23 E-value=1.5e-05 Score=80.92 Aligned_cols=109 Identities=13% Similarity=0.296 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCcceeeeecCCCcccchhHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 133 FAYLQDMVEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKA-VSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMM 211 (247)
Q Consensus 133 Fl~LQ~~Id~aii~~~~~~~~~~~v~~~~fP~p~~~~d~~~~~-~~~~~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m 211 (247)
+-.+....++++.+...+.. +.+...++|+...... ... .....++++.+.+++.+..++...+.||+.|.|..|
T Consensus 256 ~~~~~~~~~n~l~~~~~~~~--i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li~e~~~~~~~~~ 331 (885)
T KOG0059|consen 256 LPFLLGLGSNALRRALNLSG--ISVLNEPMPLSGAQLS--LDLLADLLGALFLLFVFLLLFSVFLLSLILERQQRLRHQQ 331 (885)
T ss_pred HHHhcchHHHHHHHhhcccc--ceeeecCcCccHhhhh--hhhhhHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Confidence 35558888888887765433 3333335554443322 222 345678888899999999999999999999999999
Q ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7370 212 RVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLV 245 (247)
Q Consensus 212 ~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~il~ 245 (247)
+++|+++++||++|+++.++.+++.++++.++..
T Consensus 332 ~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~~ 365 (885)
T KOG0059|consen 332 LIAGLSPSTYWLFALVWDLLLYLLILLILLIFVL 365 (885)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998887666543
No 5
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=92.94 E-value=0.66 Score=43.29 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q psy7370 179 TFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVL 239 (247)
Q Consensus 179 ~~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il 239 (247)
+.++++++.+++........++.|||+|.-|.+..+.++..-+-.+=.+-..++.++...+
T Consensus 190 ~~~ll~~~~~~~~~~~~~~sva~EKe~rtlE~LLssPvSr~~ii~gKil~~~~v~l~~~~~ 250 (407)
T COG1668 190 LIFLLFFIPLSYAGQMVADSVAGEKERRTLEVLLSSPVSRSEIVFGKILGAALVGLTQIAL 250 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhccCcChhhhhHHHHHHHHHHHHHHHHH
Confidence 4455555555666668999999999999999999999999888777776666666555333
No 6
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=89.81 E-value=2.9 Score=35.38 Aligned_cols=59 Identities=5% Similarity=-0.044 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q psy7370 179 TFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITA 237 (247)
Q Consensus 179 ~~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~ 237 (247)
..|.+.+...+.........++.|||++.-+-++.+.++.+.+-++-.+...+..++.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~ 97 (232)
T TIGR00025 39 IPVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQT 97 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 33454555556666777888999999999999999999999999988666555554443
No 7
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=89.79 E-value=2.4 Score=33.74 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7370 194 MICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLL 243 (247)
Q Consensus 194 ~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~i 243 (247)
.....++.|||++.-|.++..-++.+.+.++-.+.+.+..++.++++.++
T Consensus 7 ~~~~~i~~dr~~G~~~~l~~tP~~~~~~~~g~~l~~~~~~~~~~~ii~~v 56 (152)
T TIGR01248 7 FNAIDITIDREIGLLSRLWVLPIHRASALLARIIAETIRAFIGTILILAI 56 (152)
T ss_pred HHHHHHHHHHHhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556899999999999999999999999999988888777766555443
No 8
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=89.03 E-value=3.9 Score=34.60 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7370 180 FPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLL 243 (247)
Q Consensus 180 ~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~i 243 (247)
.|-.+.++.+.........++.|||++.-+-+.....+.+.++++..+...+..++.++++.++
T Consensus 51 ~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i 114 (236)
T TIGR01247 51 VPGIVAMTVFNMSFFSGISVIWDRQFGFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILAL 114 (236)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433444334444445567889999888777788899999999999988888877766555543
No 9
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=88.93 E-value=4.1 Score=35.04 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q psy7370 195 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITA 237 (247)
Q Consensus 195 ~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~ 237 (247)
..+.+++|||+|--|.+....++.+...++-++..+++.++..
T Consensus 69 ~~~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~ 111 (240)
T TIGR03518 69 TMRSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILAL 111 (240)
T ss_pred HHHHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999888776655443
No 10
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=82.07 E-value=11 Score=31.82 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7370 180 FPLFMVLSWVFACAM-ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLL 243 (247)
Q Consensus 180 ~~l~~~l~~~~~~~~-~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~i 243 (247)
.|-++.+..+..... ....+.+||+.+..+.+..+.++...+.++..+...+...+...++.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 155 (286)
T COG0842 91 VPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLV 155 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHhhCcHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343333443444333 3344444699999999999999976666655555555554444444433
No 11
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=81.71 E-value=3.7 Score=28.89 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy7370 199 IVYEKQERLKEMMRVMGLSNGVHWTAWFIDSI 230 (247)
Q Consensus 199 IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~ 230 (247)
..+|...|.|.|+-+||++--.+-+++++...
T Consensus 9 ~~~d~~~R~r~Y~i~M~~Ri~~fvlA~~~~~~ 40 (73)
T PF11298_consen 9 LSQDQRRRRRRYLIMMGIRIPCFVLAAVVYRL 40 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678899999999999999988888888754
No 12
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=81.57 E-value=13 Score=31.91 Aligned_cols=62 Identities=11% Similarity=0.163 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 180 FPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS 241 (247)
Q Consensus 180 ~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~ 241 (247)
.|-++.++.+.....-...++.|||++.-+.++.+.++.+.+-++..+...+..++..+++.
T Consensus 63 ~pGi~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~p~~~~~~~l~~~l~~~~~~~~~~~i~~ 124 (253)
T TIGR03861 63 VPGLCCMILLFNGMQSSLSMVYDREMGSMRVLLTSPLPRPFLLFCKLLASALISLLQVYAFL 124 (253)
T ss_pred HHHHHHHHHHHHHHHhhhHhHHhHhcCHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34333333333334445678999999999999999999999999998888777777654433
No 13
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=76.09 E-value=19 Score=30.45 Aligned_cols=62 Identities=6% Similarity=0.111 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 181 PLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSL 242 (247)
Q Consensus 181 ~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~ 242 (247)
+++.+..++-....+-|....|+|++--|.+++.+.+..+.|++-.+...++..+..++...
T Consensus 50 gllWi~~lfa~~l~~~r~f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~p 111 (215)
T PF03379_consen 50 GLLWIALLFASLLGLNRSFAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFP 111 (215)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555678899999999999999999999999988877777766665555443
No 14
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=75.93 E-value=24 Score=28.25 Aligned_cols=48 Identities=10% Similarity=0.136 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 193 AMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLL 240 (247)
Q Consensus 193 ~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~ 240 (247)
......+..|++.|.-+.+...+.+.+.++.+-++...+..++..++.
T Consensus 64 ~~~~~~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~ 111 (232)
T PF12730_consen 64 ILAALLFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLIS 111 (232)
T ss_pred HHHHHHHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 355566789999999999999999999999988877777666655553
No 15
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=75.82 E-value=28 Score=25.31 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q psy7370 189 VFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAV 238 (247)
Q Consensus 189 ~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~i 238 (247)
...+...++..+.|| +|--..++.+|.+.+.-....+...++..++.++
T Consensus 12 ~~~~~~~~~~~~~~~-~~~~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~ 60 (121)
T PF02687_consen 12 IFILFNIISSSIRER-RREIAILRALGASKRQIRKMFLYEALLIALIGIL 60 (121)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHH
Confidence 334445555555665 5556789999999977766655555555444433
No 16
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=75.28 E-value=1.1 Score=30.75 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhCCchHHHHH
Q psy7370 200 VYEKQERLKEMMRVMGLSNGVHWT 223 (247)
Q Consensus 200 V~EKE~~lke~m~mMGL~~~~~wl 223 (247)
|.||-.+-||-|+.+||++--+|+
T Consensus 1 v~~RV~khR~~lRa~GLRPVqiWV 24 (65)
T PF11455_consen 1 VRERVRKHRERLRAAGLRPVQIWV 24 (65)
T ss_pred ChHHHHHHHHHHHHcCCCcceeeC
Confidence 578999999999999999988884
No 17
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. F
Probab=72.49 E-value=23 Score=28.43 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 189 VFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS 241 (247)
Q Consensus 189 ~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~ 241 (247)
............++..+++.|..+.+|.+.+..|.--.+-...-.++..++..
T Consensus 85 ~~~~~~~~~~~~~~i~~~~~eaa~~~G~~~~~~~~~v~lp~~~~~i~~~~~~~ 137 (190)
T cd06261 85 APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLA 137 (190)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHcCCCHhHHhHHhhhhhhhHHHHHHHHHH
Confidence 55566677888888899999999999999988887765555554444444443
No 18
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=70.60 E-value=68 Score=28.72 Aligned_cols=42 Identities=12% Similarity=0.313 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHH
Q psy7370 179 TFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVH 221 (247)
Q Consensus 179 ~~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~ 221 (247)
.+.+++.++.+..+...++-.+.|| ++-=+.||.+|-+++-.
T Consensus 184 ~~~~l~~~~~~~~i~ntir~~v~~r-~~ei~im~~~GAt~~~I 225 (309)
T PRK11026 184 MIGVLMVAAVFLVIGNSVRLSIFSR-RDTINVMKLIGATDGFI 225 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCChHHH
Confidence 3444555555556667788888899 56668999999998653
No 19
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=64.49 E-value=67 Score=27.54 Aligned_cols=61 Identities=11% Similarity=-0.076 Sum_probs=40.9
Q ss_pred hhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q psy7370 178 KTFPLFMVLSWVFAC--AMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAV 238 (247)
Q Consensus 178 ~~~~l~~~l~~~~~~--~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~i 238 (247)
.+.|-++.++-+... ......+.+|||+|.-|.+...-++.+.+-++-.+...+..++..+
T Consensus 59 f~~pg~l~~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ 121 (253)
T TIGR01291 59 FLAAGMVATSAMTASTFETIYATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGT 121 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 344544444333332 2223467899999999999999999999998888766555544443
No 20
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=63.96 E-value=54 Score=27.85 Aligned_cols=60 Identities=10% Similarity=0.012 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 181 PLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLL 240 (247)
Q Consensus 181 ~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~ 240 (247)
+++.+.+.+-....+-|....|+|.+--|.+.+-+.+....|++-.+...+...+..+++
T Consensus 47 gilWva~lfa~ll~l~rlF~~d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~ 106 (211)
T TIGR01190 47 GIVWVGALLSSLLSLDRLFRDDFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLL 106 (211)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556556666677788899999999999999999999999887776666655544443
No 21
>PF13346 ABC2_membrane_5: ABC-2 family transporter protein
Probab=61.33 E-value=73 Score=25.68 Aligned_cols=48 Identities=13% Similarity=0.320 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7370 196 CKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLL 243 (247)
Q Consensus 196 v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~i 243 (247)
......|++.|-..+..++-++..-.-.|-++..++..++..++..++
T Consensus 53 ~~~~~~d~~~~~~~~~~slPvsr~~iV~akyl~~~i~~~~~~l~~~i~ 100 (206)
T PF13346_consen 53 MSSFSYDEKSKWNKYLNSLPVSRKEIVLAKYLFSLIIILIGSLISLII 100 (206)
T ss_pred HHHHHHHHhcChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777899999999999999999999999888888877766554
No 22
>PF00528 BPD_transp_1: Binding-protein-dependent transport system inner membrane component; InterPro: IPR000515 Bacterial binding protein-dependent transport systems [, ] are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown [, ] that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems [] to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices, however they can be classified into seven families which have been respectively termed: araH, cysTW, fecCD, hisMQ, livHM, malFG and oppBC.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2ONK_H 3PUX_G 3PUY_G 2R6G_G 3PV0_G 3RLF_G 3PUW_G 3PUV_G 3PUZ_G 3TUI_E ....
Probab=60.96 E-value=37 Score=26.65 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q psy7370 185 VLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVL 239 (247)
Q Consensus 185 ~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il 239 (247)
.+..............++..+...|..+.+|.+.|..|.-..+-.....++...+
T Consensus 61 ~~~~~~~~~~~~~~~~~~i~~~~~eaa~~~G~s~~~~~~~v~lP~~~p~i~~~~~ 115 (185)
T PF00528_consen 61 VIFWFPFAIIIIYNALRSIPKEYIEAARILGASRWQIFRKVILPNIKPGILSAFI 115 (185)
T ss_dssp HHHHHHHHHHHHHHHHCCS-THHHHHHHHTTS-HHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCccceeeHHHHHHHHHHHHH
Confidence 4444556666777777788899999999999999988865555444444443333
No 23
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=56.94 E-value=35 Score=29.53 Aligned_cols=43 Identities=28% Similarity=0.421 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy7370 197 KSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVIT 247 (247)
Q Consensus 197 ~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~il~~~ 247 (247)
..+-.|. .||+++.+. +.+ |+-|++.+++ +++.++|++++|++
T Consensus 209 ~~l~~~~-~rl~~~~~~-~~~----~~~~~~i~~v--~~~Fi~mvl~iri~ 251 (251)
T PF09753_consen 209 SSLKRES-KRLKEHSSK-SWG----CWTWLMIFVV--IIVFIMMVLFIRIF 251 (251)
T ss_pred HHHHHHH-HHHHHHHHh-ccc----HHHHHHHHHH--HHHHHHHHHHheeC
Confidence 3444454 578887653 444 6666655443 33456677777654
No 24
>COG4591 LolE ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]
Probab=53.02 E-value=1.5e+02 Score=27.71 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Q psy7370 189 VFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMI 234 (247)
Q Consensus 189 ~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~ 234 (247)
.+.+.+...-+|.|| ++=--.||.||+++...-...+....+.-+
T Consensus 284 ~fnI~ssL~m~V~ek-~~eIAILrtmGa~~~~I~~iFl~~G~~iG~ 328 (408)
T COG4591 284 AFNIISSLTMLVKEK-TREIAILRAMGASPSHIMRIFLLQGLIIGL 328 (408)
T ss_pred HHHHHHHHHHHhhhh-hhHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 456666677789999 455678999999997665444444443333
No 25
>PRK10971 sulfate/thiosulfate transporter subunit; Provisional
Probab=52.50 E-value=85 Score=27.22 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7370 188 WVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLL 243 (247)
Q Consensus 188 ~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~i 243 (247)
........++...++..+++.|.-+++|.+.+-.+.-..+=.....++++.+++..
T Consensus 151 ~~p~~~~~~~~~l~~i~~~l~eaA~~~Gas~~~~~~~i~lP~l~p~i~~~~~l~f~ 206 (277)
T PRK10971 151 SIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFT 206 (277)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34445556677778889999999999999998877666555544444444444433
No 26
>PRK15111 antimicrobial peptide ABC transporter permease SapC; Provisional
Probab=50.85 E-value=1.2e+02 Score=26.79 Aligned_cols=45 Identities=16% Similarity=-0.090 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy7370 189 VFACAMICKSIV-YEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVM 233 (247)
Q Consensus 189 ~~~~~~~v~~IV-~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~ 233 (247)
.......++.-+ +||++...|.-+.+|.+.+-...-+.+-...-.
T Consensus 170 ~p~~~r~vr~~v~~~~~~~yveaAr~~Gas~~~Ii~~~iLP~~~p~ 215 (296)
T PRK15111 170 LPRMVRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAG 215 (296)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHcCCCHHHHHHHHHHHhhHHH
Confidence 334455566656 589999999999999999877655554443333
No 27
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC. This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=48.92 E-value=1.3e+02 Score=25.96 Aligned_cols=43 Identities=19% Similarity=0.137 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q psy7370 191 ACAMICKSIVYE-KQERLKEMMRVMGLSNGVHWTAWFIDSIVVM 233 (247)
Q Consensus 191 ~~~~~v~~IV~E-KE~~lke~m~mMGL~~~~~wlsWfl~~~~~~ 233 (247)
.....++..+.+ |++...|.-+.+|.+.+-.+.-+.+=...-.
T Consensus 138 ~~~r~~r~~~~~~~~~~~veaA~~~G~s~~~ii~~~ilP~~~p~ 181 (258)
T TIGR02790 138 WYARMVRGMVVSLKQREFVLAARTSGASHWQIIRRHILPNILSP 181 (258)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHcCCChhhhHHHHhHHhhHHH
Confidence 345666666644 7788999999999999777766654443333
No 28
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=47.94 E-value=60 Score=27.56 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy7370 189 VFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVV 232 (247)
Q Consensus 189 ~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~ 232 (247)
++.+..-...+..|||+|-=|.+....++.+.+.++=++...+.
T Consensus 80 l~~~~l~~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~ 123 (277)
T PF12679_consen 80 LFAIILASDLIAGERERGTIELLLSKPISRSEILLGKFLAAILF 123 (277)
T ss_pred HHHHHHHHHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHH
Confidence 33555667789999999999999999999999998888776666
No 29
>TIGR01581 Mo_ABC_porter NifC-like ABC-type porter. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Probab=47.77 E-value=1.2e+02 Score=25.09 Aligned_cols=54 Identities=9% Similarity=0.072 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 187 SWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLL 240 (247)
Q Consensus 187 ~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~ 240 (247)
.........++.-.++-.+.+.|..+++|.+.|-.+.--.+=.....++.+.++
T Consensus 113 ~~~p~~~~~~~~~l~~i~~~~~eaA~~~Gas~~~~~~~v~lP~~~p~i~~~~~l 166 (225)
T TIGR01581 113 VASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVL 166 (225)
T ss_pred HHhHHHHHHHHHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334455566777777778899999999999998887555444444444433333
No 30
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=47.03 E-value=2.1e+02 Score=25.55 Aligned_cols=42 Identities=7% Similarity=0.188 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHH
Q psy7370 179 TFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVH 221 (247)
Q Consensus 179 ~~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~ 221 (247)
.+.+++.++.+..+...++--+.|| ++-=+.||.+|-+++..
T Consensus 184 ~l~~ll~~~~~~~i~Ntirl~i~~R-r~EI~im~lvGAt~~~I 225 (309)
T TIGR00439 184 FLSVLMGMAVFLVIGNSIRLQILSR-RESIEVTKLLGATDSFI 225 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHH
Confidence 3344444555555667788888898 56668999999998543
No 31
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=45.38 E-value=1.9e+02 Score=28.47 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7370 195 ICKSIVYEKQERLKEMMRVMGL-SNGVHWTAWFIDSIVVMIITAVLLSLLLV 245 (247)
Q Consensus 195 ~v~~IV~EKE~~lke~m~mMGL-~~~~~wlsWfl~~~~~~~i~~il~~~il~ 245 (247)
.+..+..||..=.||. -.|+ +.++|++|..+..+.+.++.+++.+++..
T Consensus 411 ~~~~f~~er~v~~rE~--~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y 460 (617)
T TIGR00955 411 VINVFTAELPVFLRET--RSGLYRVSAYFLAKTIAELPLFIILPALFTSITY 460 (617)
T ss_pred HHHHHHHHHHHHHHhh--cCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455667777666664 4566 67899999999988887777766666543
No 32
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=45.35 E-value=98 Score=24.37 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7370 220 VHWTAWFIDSIVVMIITAVLLSLLLV 245 (247)
Q Consensus 220 ~~wlsWfl~~~~~~~i~~il~~~il~ 245 (247)
.+-..-++.+++..++.++++++++|
T Consensus 136 ~~~~~~~~~~l~~G~i~sli~a~i~k 161 (163)
T PF13858_consen 136 SLAFSGFISNLIFGFIISLIIALILK 161 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444788888888888888888876
No 33
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=44.52 E-value=3.4 Score=33.42 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7370 198 SIVYEKQERLKEMMRVMGL-SNGVHWTAWFIDSIVVMIITAVLLSLL 243 (247)
Q Consensus 198 ~IV~EKE~~lke~m~mMGL-~~~~~wlsWfl~~~~~~~i~~il~~~i 243 (247)
....|||++.-+..+..|+ +.+.+.++..+..++..++.++++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~ 118 (210)
T PF01061_consen 72 SISFERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLII 118 (210)
T ss_pred hhhhhhhccccccccccccccchhhheeeccccccccccccchhhhh
Confidence 3778999999999999999 999999999988877777766665554
No 34
>PRK10913 dipeptide transporter; Provisional
Probab=44.33 E-value=1.9e+02 Score=25.65 Aligned_cols=43 Identities=9% Similarity=0.046 Sum_probs=31.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy7370 189 VFACAMICKSI-VYEKQERLKEMMRVMGLSNGVHWTAWFIDSIV 231 (247)
Q Consensus 189 ~~~~~~~v~~I-V~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~ 231 (247)
......+++.- .+||++..-|.-+.+|++++-...-+.+-...
T Consensus 173 ~p~~ar~~r~~~l~~~~~~yV~aAra~G~s~~~Ii~rhilPn~~ 216 (300)
T PRK10913 173 LPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCL 216 (300)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHcCCChHHhHHHHHHHhhH
Confidence 33445566655 58999999999999999997766555554443
No 35
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=43.37 E-value=1.9e+02 Score=27.57 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=37.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 178 KTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLL 240 (247)
Q Consensus 178 ~~~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~ 240 (247)
..+.++-+++-.+.+...+|.+-+|||. .-|.+..-+++.+ +|++-++.-.+.....+.++
T Consensus 351 ~lfsIisil~a~~~V~~vlkl~geEr~n-r~eal~a~~vsR~-~vl~syl~~all~~~l~tll 411 (536)
T COG3559 351 LLFSIISILAAAFAVSLVLKLHGEERGN-RAEALLAGAVSRT-HVLASYLAMALLGSALATLL 411 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcc-hHHHHHhcchhhh-hHHHHHHHHHHHHHHHHHHH
Confidence 3445555566677777888888888865 4588888888864 45544444333443434333
No 36
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=42.92 E-value=75 Score=26.00 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7370 179 TFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLL 243 (247)
Q Consensus 179 ~~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~i 243 (247)
+.|.++.++..+ .......+..+||.|. +....+.+.++++-.+...+..++.++++.++
T Consensus 25 ~~p~~~~~~l~~-ga~~~~~~~~~~~~~~----~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~i 84 (208)
T TIGR03062 25 LAPYFLSLALFV-GALVLNMIIPPLSRRA----LPKSARSWRIALAKLLPGGLIGVLQAIILYGV 84 (208)
T ss_pred hHHHHHHHHHHH-HHHHHHHHhccccccc----cccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457666666443 3333444566666554 35667888888888888877777776665554
No 37
>PF07988 LMSTEN: LMSTEN motif; InterPro: IPR012642 Proteins containing the Wos2 domain are involved in the regulation of the cell cycle [] and are Myb-related transcriptional activators. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2AGH_A 1SB0_B.
Probab=42.52 E-value=15 Score=23.13 Aligned_cols=10 Identities=40% Similarity=0.760 Sum_probs=6.3
Q ss_pred HHHHHHHHHH
Q psy7370 201 YEKQERLKEM 210 (247)
Q Consensus 201 ~EKE~~lke~ 210 (247)
-|||+|+||+
T Consensus 24 pdkekrikel 33 (48)
T PF07988_consen 24 PDKEKRIKEL 33 (48)
T ss_dssp ---HHHHHHH
T ss_pred hhHHHHHHHH
Confidence 4799999986
No 38
>PRK11146 outer membrane-specific lipoprotein transporter subunit LolE; Provisional
Probab=42.50 E-value=2.7e+02 Score=25.47 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy7370 194 MICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSI 230 (247)
Q Consensus 194 ~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~ 230 (247)
..+...|.|| +|-=-.||.+|.+++....-.+.-.+
T Consensus 287 ~t~~~~v~eR-~rEigilralG~~~~~I~~~~l~e~~ 322 (412)
T PRK11146 287 STLVMAVKDK-SGDIAILRTLGAKDGLIRAIFVWYGL 322 (412)
T ss_pred HHHHHHHHHH-HHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3345568887 45556799999999755544443333
No 39
>PRK10417 nikC nickel transporter permease NikC; Provisional
Probab=42.13 E-value=2e+02 Score=25.08 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=30.5
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q psy7370 192 CAMICKSIVY-EKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMII 235 (247)
Q Consensus 192 ~~~~v~~IV~-EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i 235 (247)
...+++..+. +|++..-|.-|.+|++.+-...-+.+-.....++
T Consensus 144 ~ar~~r~~~~~~~~~~yv~aAra~G~s~~~i~~~hiLP~~~p~ii 188 (272)
T PRK10417 144 YARMVRSLVISLRQREFVLAARLSGAGHVRVFIDHLLPAVIPQLL 188 (272)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHcCCCchhhHHHHhHHhhHHHHH
Confidence 3445666554 5889999999999999987776665544443333
No 40
>TIGR02213 lolE_release lipoprotein releasing system, transmembrane protein LolE. This protein is part of an unusual ABC transporter complex that releases lipoproteins from the periplasmic side of the bacterial inner membrane, rather than transport any substrate across the inner membrane. In some species, the permease-like transmembrane protein is represented by two paralogs, LolC and LolE, both in the LolCDE complex. This family consists of LolE, as found in E. coli and related species.
Probab=40.66 E-value=2.9e+02 Score=25.31 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy7370 195 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVV 232 (247)
Q Consensus 195 ~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~ 232 (247)
.+...+.|| +|-=-.||.+|.+......-...-.+++
T Consensus 287 ~~~~~v~eR-~~ei~~l~alG~~~~~i~~~~~~e~~~l 323 (411)
T TIGR02213 287 TLIMAVKDK-QGDIAILRTLGANDGLIKRIFVWYGLQA 323 (411)
T ss_pred HHHHHHHHH-HHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 355667887 4455679999999975554444433333
No 41
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional
Probab=40.23 E-value=1.7e+02 Score=25.31 Aligned_cols=49 Identities=20% Similarity=0.170 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q psy7370 190 FACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAV 238 (247)
Q Consensus 190 ~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~i 238 (247)
++...-+..-+++.++...|..+.+|.+.+..+.-..+-..+..+++.+
T Consensus 137 ~p~~~~~~~g~~~i~~~~v~~Ar~~G~s~~~i~~~v~lP~alp~i~t~~ 185 (263)
T PRK11365 137 FPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGV 185 (263)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHcCCCHHHHHHHHhHHhhHHHHHHHH
Confidence 3433335567888999999999999999988887776666655555543
No 42
>PRK15066 inner membrane transport permease; Provisional
Probab=39.87 E-value=2.4e+02 Score=24.03 Aligned_cols=39 Identities=18% Similarity=0.105 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q psy7370 194 MICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVV 232 (247)
Q Consensus 194 ~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~ 232 (247)
.....++.||+.|--|-+...-++.+.+-++-.+...+.
T Consensus 79 ~~~~~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~ 117 (257)
T PRK15066 79 NVASSFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVAR 117 (257)
T ss_pred HHHHHHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 344567888887777777788888888777766655444
No 43
>PRK10782 DL-methionine transporter permease subunit; Provisional
Probab=38.43 E-value=1.7e+02 Score=24.12 Aligned_cols=51 Identities=16% Similarity=0.084 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q psy7370 189 VFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVL 239 (247)
Q Consensus 189 ~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il 239 (247)
.......++.-..+-.+...|..+..|.+.+-.+.-..+-.....+++...
T Consensus 101 ~~~~~~~~~~~l~~v~~~~~eaA~~~G~s~~~~~~~vilP~~~p~i~~~~~ 151 (217)
T PRK10782 101 APFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAAT 151 (217)
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHcCCCHHHHhHHhhHHhhHHHHHHHHH
Confidence 344555566666777889999999999999888766655554444444433
No 44
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=38.19 E-value=1.5e+02 Score=21.36 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=27.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCC
Q psy7370 172 FIKAVSKTFPLFMVLSWVFACAMICKSI---VYEKQERLKEMMRVMGL 216 (247)
Q Consensus 172 ~~~~~~~~~~l~~~l~~~~~~~~~v~~I---V~EKE~~lke~m~mMGL 216 (247)
|.-++..++-+++++.|+..++++-++. -.||+++-|-++.-.|.
T Consensus 36 FvLVic~~lVfVii~lFi~ll~~i~~~~e~~~~~~~~~~~~~l~Nld~ 83 (84)
T PF06143_consen 36 FVLVICCFLVFVIIVLFILLLYNINKNAEQDRAERQQREKTYLANLDY 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 4446666666666666666666655543 45777777777665443
No 45
>PRK09421 modB molybdate ABC transporter permease protein; Reviewed
Probab=38.13 E-value=1.6e+02 Score=24.60 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 188 WVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLL 240 (247)
Q Consensus 188 ~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~ 240 (247)
.++.....++.-.+.-.+++.|.-+..|.+.+-.+.-..+=...-.++++.++
T Consensus 103 ~~p~~~~~~~~~l~~i~~~~~eaA~~~G~s~~~~~~~I~lP~~~p~i~~~~~l 155 (229)
T PRK09421 103 AFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVL 155 (229)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHcCCChhhhhhhhhhHhhHHHHHHHHHH
Confidence 34444556666666667899999999999998776555444433334333333
No 46
>TIGR01183 ntrB nitrate ABC transporter, permease protein. This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB.
Probab=38.00 E-value=2.4e+02 Score=23.47 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 196 CKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLL 240 (247)
Q Consensus 196 v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~ 240 (247)
+..=+++=++++.|..+.+|.+.|..+..=.+-...-.+++.+-+
T Consensus 100 ~~~g~~~v~~~l~e~a~~~g~s~~~~~~~V~lP~a~P~i~~glr~ 144 (202)
T TIGR01183 100 TAVGVQQIPQDYNNVARVLKLSKSDYFLKVLLPAAVPYIFTGLRI 144 (202)
T ss_pred HHHHHHHCCHHHHHHHHHcCCCHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444556667889999999999998877655554554444444433
No 47
>PF14163 SieB: Superinfection exclusion protein B
Probab=37.98 E-value=1e+02 Score=24.34 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=21.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy7370 174 KAVSKTFPLFMVLSWVFACAMICKSIVYE 202 (247)
Q Consensus 174 ~~~~~~~~l~~~l~~~~~~~~~v~~IV~E 202 (247)
..-+.++++.+++|..+.+..++..+..|
T Consensus 30 ~~y~~~i~~~fl~s~s~li~~~~~~~~~~ 58 (151)
T PF14163_consen 30 IKYQPWIGLIFLFSVSYLIAQLLSFIYKE 58 (151)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677888888888888888888655
No 48
>TIGR01097 PhnE phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context).
Probab=37.38 E-value=1.6e+02 Score=25.05 Aligned_cols=35 Identities=17% Similarity=0.008 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Q psy7370 189 VFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWT 223 (247)
Q Consensus 189 ~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wl 223 (247)
........+...+|.+++..|..+++|.+.+..+.
T Consensus 138 ~~~~~~~~~~~l~~i~~~~~eaa~~~Gas~~q~~~ 172 (250)
T TIGR01097 138 VGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIR 172 (250)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHcCCCHHHHhH
Confidence 44555666778888999999999999999866553
No 49
>PRK15082 glutathione ABC transporter permease GsiD; Provisional
Probab=35.98 E-value=2.7e+02 Score=24.63 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy7370 189 VFACAMICKSIVY-EKQERLKEMMRVMGLSNGVHWTAWFIDSI 230 (247)
Q Consensus 189 ~~~~~~~v~~IV~-EKE~~lke~m~mMGL~~~~~wlsWfl~~~ 230 (247)
.......++..+. +|++..-|.-+.+|.+.+-.+.-+.+-..
T Consensus 174 ~~~~~r~vR~~~~~~~~~~yV~aAra~G~s~~~il~rhiLPn~ 216 (301)
T PRK15082 174 IPAFARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGT 216 (301)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHcCCChhhhhHHHhHHhh
Confidence 3444555555444 58888999999999999777665544333
No 50
>PRK10814 outer membrane-specific lipoprotein transporter subunit LolC; Provisional
Probab=35.81 E-value=3.4e+02 Score=24.68 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q psy7370 189 VFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDS 229 (247)
Q Consensus 189 ~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~ 229 (247)
.+.+...+.-.|.|| +|-=-.||.+|.+....-...++-.
T Consensus 279 ~~~i~~~l~~~v~eR-~rEigiLralG~~~~~I~~~~~~E~ 318 (399)
T PRK10814 279 AFNIITSLGLLVMEK-QGEVAILQTQGLTRRQIMMVFMVQG 318 (399)
T ss_pred HHHHHHHHHHhHHHH-HHHHHHHHHcCCChHHHHHHHHHHH
Confidence 344444455678888 4555679999999865544433333
No 51
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=35.46 E-value=2.3e+02 Score=22.55 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 205 ERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLL 240 (247)
Q Consensus 205 ~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~ 240 (247)
-+.||..++++=..|..|+.|++.-.+...+..++.
T Consensus 128 f~~~~i~~~i~~~~~~~~l~~~i~~~ii~~i~~~i~ 163 (169)
T PF13197_consen 128 FNFKEIFKMISSIGWLGYLIAYIVVIIISIIIGLIG 163 (169)
T ss_pred cCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777762334444444444333333333333
No 52
>PHA02692 hypothetical protein; Provisional
Probab=33.76 E-value=65 Score=22.37 Aligned_cols=46 Identities=26% Similarity=0.406 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy7370 193 AMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVI 246 (247)
Q Consensus 193 ~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~il~~ 246 (247)
.-.++.+..+| ..-+-+.+.-|.-|++..++..++..+++.+-||.
T Consensus 24 i~vVksVLtDk--------~~~~~~~~~~~~~~ii~~~~~~~~~vll~flYLK~ 69 (70)
T PHA02692 24 LNIVRTVMTEK--------PACDRSKGVPWTTVFLIGLIAAAIGVLLCFHYLKL 69 (70)
T ss_pred HHHHHHHHcCC--------CcccccCCcchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677777776 12244556667667776666666666666665654
No 53
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=33.04 E-value=1.5e+02 Score=24.95 Aligned_cols=17 Identities=12% Similarity=0.349 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7370 196 CKSIVYEKQERLKEMMR 212 (247)
Q Consensus 196 v~~IV~EKE~~lke~m~ 212 (247)
+..+..||+.++...+.
T Consensus 78 I~~vLe~R~~~I~~~L~ 94 (204)
T PRK09174 78 IGGIIETRRDRIAQDLD 94 (204)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78889999998887664
No 54
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=32.40 E-value=89 Score=26.28 Aligned_cols=33 Identities=9% Similarity=0.271 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC---CchHHHHHHHH
Q psy7370 194 MICKSIVYEKQERLKEMMRVMG---LSNGVHWTAWF 226 (247)
Q Consensus 194 ~~v~~IV~EKE~~lke~m~mMG---L~~~~~wlsWf 226 (247)
.++...-.-.|+..+++.+.=. +.+|..|.+|+
T Consensus 119 ~ll~~a~~qqe~n~~~l~~Ld~w~~l~~wfdit~W~ 154 (204)
T PF00517_consen 119 NLLEEAQNQQEKNEQDLLKLDSWTNLWSWFDITKWL 154 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHHCHHHHH
T ss_pred HHHHHHHhchhhhhhhhcCCcHHhhhhhHHhHHHHH
Confidence 3344444444566777777666 34455555554
No 55
>PRK10160 taurine transporter subunit; Provisional
Probab=32.21 E-value=2.5e+02 Score=24.45 Aligned_cols=47 Identities=17% Similarity=0.059 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q psy7370 191 ACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITA 237 (247)
Q Consensus 191 ~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~ 237 (247)
++...+..-+++-.+++.|..+.+|.+.+-.+.-..+-...-.+++.
T Consensus 156 p~~~~~~~g~~~v~~~~~e~A~~~G~s~~~~~~~v~lP~alp~i~~~ 202 (275)
T PRK10160 156 PVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTG 202 (275)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHHHHhhhHhhHHHHHHH
Confidence 33333444455545789999999999998877655554444444443
No 56
>TIGR02138 phosphate_pstC phosphate ABC transporter, permease protein PstC. The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise.
Probab=31.69 E-value=3.1e+02 Score=23.86 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy7370 189 VFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFI 227 (247)
Q Consensus 189 ~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl 227 (247)
++.+...++.-.+...+.++|.-+.+|.+.|-.+.--.+
T Consensus 163 ~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~IiL 201 (295)
T TIGR02138 163 LPTIASISRDALRAVPRSYKEASYALGATKWETIRRVIL 201 (295)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHcCCCHhhhhhHhHH
Confidence 445556666667777899999999999999876644433
No 57
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=31.63 E-value=2.7e+02 Score=23.62 Aligned_cols=52 Identities=15% Similarity=0.041 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 190 FACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS 241 (247)
Q Consensus 190 ~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~ 241 (247)
......++.-.+..++++.|.-+++|.+.|-.+.--.+=...-.++++.+++
T Consensus 140 p~~~~~~~~~~~~i~~~~~eaA~~lGas~~~~~~~I~lP~l~p~i~~~~~l~ 191 (256)
T PRK09500 140 PFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLS 191 (256)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHcCCChhhHHhHhHHHHhHHHHHHHHHHH
Confidence 3344556666777788999999999999987765554434444444443333
No 58
>PRK09881 D-ala-D-ala transporter subunit; Provisional
Probab=31.52 E-value=1.6e+02 Score=26.16 Aligned_cols=39 Identities=8% Similarity=0.035 Sum_probs=28.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy7370 189 VFACAMICKS-IVYEKQERLKEMMRVMGLSNGVHWTAWFI 227 (247)
Q Consensus 189 ~~~~~~~v~~-IV~EKE~~lke~m~mMGL~~~~~wlsWfl 227 (247)
......+++. +..+|++..-|.-+.+|.+.+-.+.-+.+
T Consensus 168 ~p~~~r~vr~~~l~~~~~~yVeaAra~G~s~~~ii~~hiL 207 (296)
T PRK09881 168 IPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHIL 207 (296)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHcCcCcceeeehhhH
Confidence 3444555654 55788999999999999998766544443
No 59
>TIGR01185 devC DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids.
Probab=31.45 E-value=4.1e+02 Score=24.32 Aligned_cols=40 Identities=8% Similarity=0.134 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q psy7370 195 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMII 235 (247)
Q Consensus 195 ~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i 235 (247)
+..-.|.|| +|-=-.||.+|.+++..-...+.-.+++.++
T Consensus 279 ~~~~~v~er-~~EigiLrAlGa~~~~I~~~~l~Ea~ll~~i 318 (380)
T TIGR01185 279 ILYTEVADH-LSEYATLKAIGYTQKYLLGVILQEALLLACL 318 (380)
T ss_pred HHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 455678888 4555679999999976665555444444443
No 60
>PRK11268 pstA phosphate transporter permease subunit PtsA; Provisional
Probab=29.40 E-value=3.1e+02 Score=24.09 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 191 ACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLL 240 (247)
Q Consensus 191 ~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~ 240 (247)
.....++...++..+.++|.-++.|.+.+--..-..+=...-.+++..++
T Consensus 167 ~~~~~~~~~l~~ip~~l~EAA~~lGas~~~~~~~iilP~~~p~iit~~il 216 (295)
T PRK11268 167 IVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLL 216 (295)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcCCChHHhhHHhhHHhhHHHHHHHHHH
Confidence 34455566677778899999999999998766555444443333333333
No 61
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=29.10 E-value=2.1e+02 Score=20.10 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=17.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy7370 175 AVSKTFPLFMVLSWVFACAMICKSI-VYEKQERLKE 209 (247)
Q Consensus 175 ~~~~~~~l~~~l~~~~~~~~~v~~I-V~EKE~~lke 209 (247)
++-.+.|+|++-++ ...-+.+.| -+|||.+.|+
T Consensus 26 vll~LtPlfiisa~--lSwkLaK~ie~~ere~K~k~ 59 (74)
T PF15086_consen 26 VLLILTPLFIISAV--LSWKLAKAIEKEEREKKKKA 59 (74)
T ss_pred HHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 33344466554433 344566666 4667776664
No 62
>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present.
Probab=28.46 E-value=2e+02 Score=24.60 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q psy7370 185 VLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMII 235 (247)
Q Consensus 185 ~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i 235 (247)
.+.........++....+..+++.|.-+.+|.+.+..+.-..+=.....++
T Consensus 140 ~~~~~p~~~~~~~~~l~~i~~~~~eaA~~lGas~~~~~~~i~lP~~~p~i~ 190 (265)
T TIGR02139 140 VFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALL 190 (265)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCChhhhhhheehhhchHHHH
Confidence 344455566667777788889999999999999987776554433333333
No 63
>PLN03211 ABC transporter G-25; Provisional
Probab=28.04 E-value=3.2e+02 Score=27.22 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7370 194 MICKSIVYEKQERLKEMMRVMGL-SNGVHWTAWFIDSIVVMIITAVLLSLLLV 245 (247)
Q Consensus 194 ~~v~~IV~EKE~~lke~m~mMGL-~~~~~wlsWfl~~~~~~~i~~il~~~il~ 245 (247)
..+.....||.-=.||.. .|+ +.++|++|+.+..+-+.++.+++.+++..
T Consensus 456 ~~~~~f~~er~v~~rE~~--~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y 506 (659)
T PLN03211 456 NSVFVFPQERAIFVKERA--SGMYTLSSYFMARIVGDLPMELILPTIFLTVTY 506 (659)
T ss_pred HHHHHHHHhhHHHHHhhh--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 345556788888888874 454 77999999999998887777777766643
No 64
>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA. This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise.
Probab=27.88 E-value=3.9e+02 Score=22.86 Aligned_cols=39 Identities=8% Similarity=0.001 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy7370 189 VFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFI 227 (247)
Q Consensus 189 ~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl 227 (247)
+......++.-.++..+++.|.-+++|.+.|-.+.--.+
T Consensus 140 ~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~i~l 178 (271)
T TIGR00974 140 LPVIIRTTEEALKAVPKDLREASYALGATKWQTIFKVVL 178 (271)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 445566667777888899999999999999877644433
No 65
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=27.28 E-value=3.9e+02 Score=23.09 Aligned_cols=39 Identities=10% Similarity=-0.061 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy7370 189 VFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFI 227 (247)
Q Consensus 189 ~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl 227 (247)
+++....++.-.++-.+.++|..+.+|.+.|-.+.--.+
T Consensus 162 ~p~~~~~~~~~l~~v~~~~~EaA~~lGas~~q~~~~viL 200 (267)
T TIGR03416 162 IPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVEL 200 (267)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHHHHHhH
Confidence 344455566666777789999999999999877644433
No 66
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC.
Probab=26.87 E-value=4.7e+02 Score=23.57 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q psy7370 193 AMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSI 230 (247)
Q Consensus 193 ~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~ 230 (247)
...+.-.|.|| +|-=-.||.+|.+.+-.-...+.-.+
T Consensus 285 ~~t~~~~v~eR-~rEigilralG~~~~~I~~~~l~E~~ 321 (411)
T TIGR02212 285 VSTLVMAVKDK-QGDIAILRTLGATPGQIMRIFIVQGL 321 (411)
T ss_pred HHHHHhhhHHh-hhHHHHHHHcCCChhhHHHHHHHHHH
Confidence 34455567777 45556799999998655444433333
No 67
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=26.60 E-value=1.5e+02 Score=18.44 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=15.9
Q ss_pred hCCchHHHHHHHHHHHHHHHH
Q psy7370 214 MGLSNGVHWTAWFIDSIVVMI 234 (247)
Q Consensus 214 MGL~~~~~wlsWfl~~~~~~~ 234 (247)
||-+..--|.|+.++.+++..
T Consensus 1 MGgy~~yVW~sYg~t~l~l~~ 21 (45)
T TIGR03141 1 MGGYAFYVWLAYGITALVLAG 21 (45)
T ss_pred CCCccHHHHHHHHHHHHHHHH
Confidence 677778889999997665543
No 68
>COG1422 Predicted membrane protein [Function unknown]
Probab=26.50 E-value=1.6e+02 Score=24.82 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhCC-chHHHHHHHHHH
Q psy7370 179 TFPLFMVLSWVFACAMICKSIVYEKQER----------LKEMMRVMGL-SNGVHWTAWFID 228 (247)
Q Consensus 179 ~~~l~~~l~~~~~~~~~v~~IV~EKE~~----------lke~m~mMGL-~~~~~wlsWfl~ 228 (247)
+-|++...-.+.++...++..+.+=+.. +++-+-..++ .+..+|+.|++.
T Consensus 122 fkPM~~~~v~tI~~F~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gWi~WYfL 182 (201)
T COG1422 122 FKPMLYISVLTIPFFAWLRWFVGTGGYLVSEPNMALPTLFHILYHTAVFGDFLGWIGWYFL 182 (201)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHccCcccccCccchhHHhhhhhhhccccccchHHHHHHHH
Confidence 3465555555555555556555554444 4556666666 778888888654
No 69
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=25.58 E-value=95 Score=23.12 Aligned_cols=6 Identities=50% Similarity=1.830 Sum_probs=3.3
Q ss_pred HHHHHH
Q psy7370 221 HWTAWF 226 (247)
Q Consensus 221 ~wlsWf 226 (247)
.|+|||
T Consensus 38 iwlswf 43 (138)
T PF05663_consen 38 IWLSWF 43 (138)
T ss_pred HHHHHH
Confidence 455665
No 70
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=25.58 E-value=3.2e+02 Score=21.63 Aligned_cols=45 Identities=18% Similarity=0.374 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhCCchH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 198 SIVYEKQERLKEMMRVMGLSNG---VHWTAWFIDSIVVMIITAVLLSL 242 (247)
Q Consensus 198 ~IV~EKE~~lke~m~mMGL~~~---~~wlsWfl~~~~~~~i~~il~~~ 242 (247)
..-.-++.++++..+.--..+. ..|..|.+.+.+..++..++..+
T Consensus 115 ~~~~a~~~~~~~af~~~~i~~~i~~~~~~~~l~~~i~~~ii~~i~~~i 162 (169)
T PF13197_consen 115 LARYARTGSFSAAFNFKEIFKMISSIGWLGYLIAYIVVIIISIIIGLI 162 (169)
T ss_pred HHHHHHcCCHHHHcCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444589999877766663 56999998888866665555544
No 71
>KOG4232|consensus
Probab=25.52 E-value=2.3e+02 Score=26.74 Aligned_cols=43 Identities=30% Similarity=0.426 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhCCchH-------------HH-HHHHHHHHHHHHHHHHHHHHHhh
Q psy7370 200 VYEKQERLKEMMRVMGLSNG-------------VH-WTAWFIDSIVVMIITAVLLSLLL 244 (247)
Q Consensus 200 V~EKE~~lke~m~mMGL~~~-------------~~-wlsWfl~~~~~~~i~~il~~~il 244 (247)
+.|+ +|+||..+-||+.+. ++ .++|++.+.+ ++++++++.+..
T Consensus 98 ~~~f-~klr~~~~~~gl~~~~~~ffl~~~l~~i~~~~~a~~~i~~~-~l~~a~Ll~~a~ 154 (430)
T KOG4232|consen 98 NESF-RKLREKLEDMGLMDLNKTFFLHLLLLIILYLVLAWLLIYLL-SLISAVLLGLAW 154 (430)
T ss_pred hHHH-HHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 6666 689999999998772 22 2344444443 666666665544
No 72
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=24.58 E-value=3.4e+02 Score=27.09 Aligned_cols=79 Identities=16% Similarity=0.278 Sum_probs=39.6
Q ss_pred eeeeecCCCcccchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q psy7370 157 IVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIIT 236 (247)
Q Consensus 157 v~~~~fP~p~~~~d~~~~~~~~~~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~ 236 (247)
..+++=...++..|..-..+.++.-- ++.+++..+.++.+--.++ |.|--..-. .+|+++|++-.++..+++
T Consensus 78 lDLn~a~~e~FspdkLRa~lERlY~t-v~v~~~~~~khi~RLrSW~-eprRT~~fc------~vYf~aW~~dll~p~~~~ 149 (642)
T PF11696_consen 78 LDLNIAEDEEFSPDKLRANLERLYMT-VVVGLAAFIKHIARLRSWR-EPRRTAAFC------AVYFIAWLLDLLVPAFFA 149 (642)
T ss_pred ccccccccccCChHHHHHHhHhheee-hHHHHHHHHHHHHHhhhhc-ccchHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 33444444445445444445444321 2233344445555555553 433333333 389999998776665554
Q ss_pred HHHHHHhh
Q psy7370 237 AVLLSLLL 244 (247)
Q Consensus 237 ~il~~~il 244 (247)
. ++++++
T Consensus 150 ~-L~~li~ 156 (642)
T PF11696_consen 150 F-LIALIL 156 (642)
T ss_pred H-HHHHhc
Confidence 4 444443
No 73
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=24.57 E-value=7.2e+02 Score=24.88 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Q psy7370 193 AMICKSIVYEKQERLKEMMRVMGLSNGVHWT 223 (247)
Q Consensus 193 ~~~v~~IV~EKE~~lke~m~mMGL~~~~~wl 223 (247)
+.++..-+.||. |==-.+|.+|.+.+....
T Consensus 697 ~~~~~~~v~~R~-rEiai~kalGas~~~I~~ 726 (803)
T TIGR03434 697 YGVLAYSVAQRT-REIGIRMALGAQRGDVLR 726 (803)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhCCCHHHHHH
Confidence 444455566652 333458999988865543
No 74
>PRK10952 glycine betaine transporter membrane protein; Provisional
Probab=23.73 E-value=5.3e+02 Score=23.60 Aligned_cols=45 Identities=13% Similarity=0.006 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Q psy7370 191 ACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMII 235 (247)
Q Consensus 191 ~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i 235 (247)
++...++.-.++-.+.+.|..+.+|.+.+....-..+-...-.++
T Consensus 222 p~irlt~~gl~~v~~e~iEAAra~Gas~~qil~~ViLP~alP~Il 266 (355)
T PRK10952 222 PIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIM 266 (355)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcCcCHHHHHHHHHHHhhHHHHH
Confidence 344444444555567899999999999987765554444433333
No 75
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=23.69 E-value=59 Score=24.94 Aligned_cols=14 Identities=36% Similarity=0.824 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhCCc
Q psy7370 204 QERLKEMMRVMGLS 217 (247)
Q Consensus 204 E~~lke~m~mMGL~ 217 (247)
++++|.+|+-||++
T Consensus 7 prk~rkmmkkmGik 20 (115)
T PRK06369 7 PRKMKQMMKQMGID 20 (115)
T ss_pred HHHHHHHHHHcCCc
Confidence 46899999999997
No 76
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=23.40 E-value=3.9e+02 Score=22.96 Aligned_cols=59 Identities=15% Similarity=0.285 Sum_probs=38.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Q psy7370 174 KAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIIT 236 (247)
Q Consensus 174 ~~~~~~~~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~ 236 (247)
+..+..+-.+-++.+.+..+...+.+..||..+.|+.....| .....||+..=++.+++
T Consensus 172 s~pGy~li~lri~~~~~F~~~~~~t~~~~~~~~k~~Fy~~f~----~~~~lWFl~~Pv~~~ia 230 (257)
T PF10192_consen 172 SWPGYILIALRIVLAIWFIYGLYQTISKEKDPEKRKFYLPFG----IIFSLWFLSLPVIVIIA 230 (257)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 344444445555555666667777777899888888888887 45567777655544443
No 77
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=23.32 E-value=2.5e+02 Score=19.16 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhCCchH
Q psy7370 204 QERLKEMMRVMGLSNG 219 (247)
Q Consensus 204 E~~lke~m~mMGL~~~ 219 (247)
|+.+|+.|.-||-+.+
T Consensus 34 e~mir~M~~QMG~kpS 49 (64)
T PF03672_consen 34 EKMIRAMMMQMGRKPS 49 (64)
T ss_pred HHHHHHHHHHhCCCcc
Confidence 5789999999997764
No 78
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=22.53 E-value=1.8e+02 Score=25.30 Aligned_cols=29 Identities=17% Similarity=0.631 Sum_probs=18.8
Q ss_pred HHHhCCchHHHHHH---HHHHHHHHHHHHHHH
Q psy7370 211 MRVMGLSNGVHWTA---WFIDSIVVMIITAVL 239 (247)
Q Consensus 211 m~mMGL~~~~~wls---Wfl~~~~~~~i~~il 239 (247)
+.|-|+.||+-|+| |.+....+.++...+
T Consensus 56 ~Lm~~iPdWl~wLs~v~~~la~L~lll~~~~l 87 (250)
T COG2981 56 TLMPGIPDWLGWLSYLLWILAVLLLLLVFAFL 87 (250)
T ss_pred HHhhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999 555444444443333
No 79
>PF03677 UPF0137: Uncharacterised protein family (UPF0137); InterPro: IPR005350 This family of bacterial proteins includes a number of plasmid-encoded virulence proteins.
Probab=22.18 E-value=1.3e+02 Score=25.98 Aligned_cols=36 Identities=19% Similarity=0.435 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Q psy7370 193 AMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDS 229 (247)
Q Consensus 193 ~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~ 229 (247)
..-..-+..||=.|.||.++-|.-++.+| .||.+..
T Consensus 77 ~~Q~vlL~GErI~kvreiLk~~~y~egtF-SaWl~l~ 112 (243)
T PF03677_consen 77 QKQAVLLHGERIKKVREILKSMNYREGTF-SAWLILT 112 (243)
T ss_pred HHhHHHHhHHHHHHHHHHHhhccCccchH-HHHHHHH
Confidence 34444467899999999999999999887 7887643
No 80
>PHA02844 putative transmembrane protein; Provisional
Probab=21.26 E-value=1.6e+02 Score=20.65 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=25.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7370 193 AMICKSIVYEK-QERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLV 245 (247)
Q Consensus 193 ~~~v~~IV~EK-E~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~il~ 245 (247)
.-.++.+..+| |. ..+ |-+.+.-|..|++. ++..++..++..+-||
T Consensus 24 I~vVksVLtd~~~s----~~~--~~~~~~~~~~~ii~-i~~v~~~~~~~flYLK 70 (75)
T PHA02844 24 IDVVKSVLSDDYDG----VNK--NNVCSSSTKIWILT-IIFVVFATFLTFLYLK 70 (75)
T ss_pred HHHHHHHHcCCCCC----ccc--cccCChhHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 35677777777 32 222 55666777777765 3334444444444444
No 81
>PHA02677 hypothetical protein; Provisional
Probab=21.22 E-value=1.9e+02 Score=21.74 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 180 FPLFMVLSWVFACAMICKSIVYEKQER 206 (247)
Q Consensus 180 ~~l~~~l~~~~~~~~~v~~IV~EKE~~ 206 (247)
+.+|++++++..+..++---..||-++
T Consensus 2 itLFLilCYFILIFNIiVP~I~EKlR~ 28 (108)
T PHA02677 2 ISLFLIICYFVLIFNILVPGIFEKLRQ 28 (108)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888998888888888888998543
No 82
>PHA02650 hypothetical protein; Provisional
Probab=20.50 E-value=1e+02 Score=21.97 Aligned_cols=32 Identities=6% Similarity=0.059 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q psy7370 193 AMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 228 (247)
Q Consensus 193 ~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~ 228 (247)
.-+++.+..+|+. ..+..+-+.+.-|.-|++.
T Consensus 24 I~VVkSVLtD~~~----~~~~~~~~~~~~~~~~ii~ 55 (81)
T PHA02650 24 IDVVKSVLSDEDG----SKKTIKSVSWFNGQNFIFL 55 (81)
T ss_pred HHHHHHHHcCCCC----ccccccccCCchHHHHHHH
Confidence 3567777777632 2222333444444444443
No 83
>PF01849 NAC: NAC domain; InterPro: IPR002715 Nascent polypeptide-associated complex (NAC) is among the first ribosome-associated entities to bind the nascent polypeptide after peptide bond formation. The nascent polypeptide-associated complex (NAC) of yeast functions in the targeting process of ribosomes to the ER membrane []. NAC may prevent binding of ribosome nascent chains (RNCs) without a signal sequence to yeast membranes.; PDB: 3MCE_D 3MCB_A 3LKX_B 1TR8_B.
Probab=20.45 E-value=32 Score=22.65 Aligned_cols=15 Identities=27% Similarity=0.773 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhCCch
Q psy7370 204 QERLKEMMRVMGLSN 218 (247)
Q Consensus 204 E~~lke~m~mMGL~~ 218 (247)
|+++|..|+-||+.+
T Consensus 1 ekk~~~~l~klgl~~ 15 (58)
T PF01849_consen 1 EKKLQKMLKKLGLKE 15 (58)
T ss_dssp -------GHHCT-EE
T ss_pred CHHHHHHHHHcCCcc
Confidence 568999999999853
Done!