Query psy7370
Match_columns 247
No_of_seqs 185 out of 810
Neff 7.7
Searched_HMMs 29240
Date Sat Aug 17 00:59:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gnt_B Carbohydrate-responsive 50.3 11 0.00038 19.6 2.0 13 218-230 7-19 (26)
2 3tui_A D-methionine transport 35.1 1E+02 0.0035 23.6 6.8 50 189-238 101-150 (217)
3 1sb0_B Protein C-MYB; CREB-bin 26.8 19 0.00064 18.9 0.5 8 203-210 1-8 (26)
4 3d31_C Sulfate/molybdate ABC t 16.5 4.4E+02 0.015 21.5 8.4 50 191-240 177-226 (295)
5 1f6f_A Placental lactogen; 4-h 13.7 2.2E+02 0.0076 22.6 4.5 33 181-213 86-134 (199)
6 2onk_C Molybdate/tungstate ABC 13.2 5.3E+02 0.018 20.8 8.3 50 192-241 166-215 (284)
7 3s8f_C Cytochrome C oxidase po 12.8 1.2E+02 0.0041 17.2 1.9 10 220-229 18-27 (34)
8 3ggz_E Vacuolar protein-sortin 11.5 98 0.0033 16.9 1.2 16 199-214 12-27 (29)
9 3org_A CMCLC; transporter, tra 10.3 9.7E+02 0.033 22.1 9.8 58 181-239 12-69 (632)
10 1y66_A Engrailed homeodomain; 9.0 2E+02 0.0068 17.1 2.0 13 200-212 5-17 (52)
No 1
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=50.34 E-value=11 Score=19.62 Aligned_cols=13 Identities=38% Similarity=1.124 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHH
Q psy7370 218 NGVHWTAWFIDSI 230 (247)
Q Consensus 218 ~~~~wlsWfl~~~ 230 (247)
+.+.|-+||+.|.
T Consensus 7 nnaiwrawyiqyv 19 (26)
T 4gnt_B 7 NNAIWRAWYIQYV 19 (26)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHH
Confidence 4689999999764
No 2
>3tui_A D-methionine transport system permease protein ME; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} SCOP: f.58.1.1 PDB: 3dhw_A* 3tuj_A 3tuz_A*
Probab=35.12 E-value=1e+02 Score=23.60 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q psy7370 189 VFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAV 238 (247)
Q Consensus 189 ~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~i 238 (247)
.......++.-.++..+.+.|.-+..|.+.+..+.-..+=...-.+++.+
T Consensus 101 ~~~~~~~~~~~l~~i~~~~~eaA~~~Gas~~~~~~~i~lP~~~p~i~~~~ 150 (217)
T 3tui_A 101 APFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAA 150 (217)
T ss_dssp HHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHHHHHhHHhhHHHHHHHH
Confidence 44455556666777788999999999999988775555444444433333
No 3
>1sb0_B Protein C-MYB; CREB-binding protein, transcriptional activation, constitutive activation, LXXLL motif, KIX; NMR {Mus musculus} PDB: 2agh_A
Probab=26.84 E-value=19 Score=18.95 Aligned_cols=8 Identities=50% Similarity=0.966 Sum_probs=5.9
Q ss_pred HHHHHHHH
Q psy7370 203 KQERLKEM 210 (247)
Q Consensus 203 KE~~lke~ 210 (247)
||+|+||.
T Consensus 1 kEkriKEl 8 (26)
T 1sb0_B 1 KEKRIKEL 8 (26)
T ss_dssp CHHHHHHH
T ss_pred CchHHHHH
Confidence 57788875
No 4
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=16.46 E-value=4.4e+02 Score=21.46 Aligned_cols=50 Identities=10% Similarity=0.017 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 191 ACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLL 240 (247)
Q Consensus 191 ~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~ 240 (247)
....+++.-.+.-.+.+.|.-++.|.+.+-.+.--.+=...-.+++..++
T Consensus 177 ~~~~~~~~~l~~i~~~l~EAA~~~Gas~~~~f~~I~lP~~~p~i~~~~~l 226 (295)
T 3d31_C 177 YLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVM 226 (295)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHcCCCHHHHHHHhhHHhhHHHHHHHHHH
Confidence 33444555566667789999999999998776554444443334333333
No 5
>1f6f_A Placental lactogen; 4-helical bundle, alpha helical bundle, ternary complex, FN III domains, beta sheet domains, cytokine-receptor complex; 2.30A {Ovis aries} SCOP: a.26.1.1
Probab=13.68 E-value=2.2e+02 Score=22.61 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHH
Q psy7370 181 PLFMVLSWVFACAMICKSI----------------VYEKQERLKEMMRV 213 (247)
Q Consensus 181 ~l~~~l~~~~~~~~~v~~I----------------V~EKE~~lke~m~m 213 (247)
.+-++-+|..|..+++..+ +.||-+.|.|+++.
T Consensus 86 ~l~Ll~sW~~PL~~L~~~~~~~~~~p~~ilska~~I~ek~~~L~egi~~ 134 (199)
T 1f6f_A 86 VISLLHSWDEPLHHAVTELANSKGTSPALLTKAQEIKEKAKVLVDGVEV 134 (199)
T ss_dssp HHHHHHTTHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccccCcchhcchHHHHHHHHHHHHHHHHH
Confidence 4556677778887776654 67887778886665
No 6
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Probab=13.19 E-value=5.3e+02 Score=20.79 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 192 CAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS 241 (247)
Q Consensus 192 ~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~ 241 (247)
...+++.-.++-.+.+.|.-++.|.+.+-.+.--.+=...-.+++..+++
T Consensus 166 ~~~~~~~~l~~i~~~l~eAA~~~Gas~~~~f~~I~lP~~~p~i~~~~~l~ 215 (284)
T 2onk_C 166 YINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMS 215 (284)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcCCCHhhHHHHhhHHhhHHHHHHHHHHH
Confidence 33444555555567899999999999988765554444444444433333
No 7
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=12.76 E-value=1.2e+02 Score=17.16 Aligned_cols=10 Identities=10% Similarity=0.059 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q psy7370 220 VHWTAWFIDS 229 (247)
Q Consensus 220 ~~wlsWfl~~ 229 (247)
..-++|+..+
T Consensus 18 ~I~i~W~~vf 27 (34)
T 3s8f_C 18 TILVFWLGVY 27 (34)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 8
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=11.51 E-value=98 Score=16.88 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHh
Q psy7370 199 IVYEKQERLKEMMRVM 214 (247)
Q Consensus 199 IV~EKE~~lke~m~mM 214 (247)
+..|||.+|-|=++..
T Consensus 12 ~~eekEDkLAqRLRAL 27 (29)
T 3ggz_E 12 VDDEKEDKLAQRLRAL 27 (29)
T ss_pred ccchhhHHHHHHHHHH
Confidence 6789999998887754
No 9
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=10.29 E-value=9.7e+02 Score=22.12 Aligned_cols=58 Identities=7% Similarity=0.161 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Q psy7370 181 PLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVL 239 (247)
Q Consensus 181 ~l~~~l~~~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il 239 (247)
.+.++++.+.-.....-....|+-.+++..+.-. +.....|+.|++...+..++++.+
T Consensus 12 ~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 69 (632)
T 3org_A 12 CFLTLLGVTAALFIFAVDLAVHGLEELRMKISRL-AGRFAGYILYVVSGVALCLLSTFW 69 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556666666666666543221 222566777877666555444443
No 10
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=9.00 E-value=2e+02 Score=17.08 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHH
Q psy7370 200 VYEKQERLKEMMR 212 (247)
Q Consensus 200 V~EKE~~lke~m~ 212 (247)
..|-|++|||..+
T Consensus 5 seeverklkefvr 17 (52)
T 1y66_A 5 SEEVERKLKEFVR 17 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3566677776654
Done!