Query psy7370
Match_columns 247
No_of_seqs 185 out of 810
Neff 7.7
Searched_HMMs 13730
Date Sat Aug 17 00:59:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7370.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7370hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2onkc1 f.58.1.1 (C:1-252) Mol 25.8 1.2E+02 0.0086 22.3 8.1 55 189-243 140-194 (252)
2 d3dhwa1 f.58.1.1 (A:6-208) D-m 20.2 87 0.0064 22.2 5.7 50 189-238 96-145 (203)
3 d3d31c1 f.58.1.1 (C:13-260) Su 17.8 1.7E+02 0.012 21.1 8.4 53 189-241 140-192 (248)
4 d2axtm1 f.23.35.1 (M:1-36) Pho 10.2 1.3E+02 0.0094 15.7 3.1 18 226-243 8-25 (36)
5 d1fkma2 a.69.2.1 (A:443-630) Y 9.5 1.3E+02 0.0092 21.4 3.7 39 193-231 9-47 (188)
6 d1rzhh2 f.23.10.1 (H:11-35) Ph 9.4 1.2E+02 0.0084 14.6 2.3 15 218-232 4-18 (26)
7 d1h5wa_ e.27.1.1 (A:) Upper co 8.7 1.2E+02 0.0087 23.4 3.3 24 196-219 191-214 (268)
8 d1xrsb2 d.230.4.1 (B:33-84) D- 8.4 91 0.0066 17.9 1.9 15 204-218 17-31 (52)
9 d1x41a1 a.4.1.1 (A:8-54) Trans 7.8 1.8E+02 0.013 15.6 3.2 22 201-222 6-27 (47)
10 d1j2jb_ a.7.8.1 (B:) ADP-ribos 7.8 80 0.0058 17.2 1.3 15 192-206 26-40 (41)
No 1
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=25.79 E-value=1.2e+02 Score=22.28 Aligned_cols=55 Identities=18% Similarity=0.083 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7370 189 VFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLL 243 (247)
Q Consensus 189 ~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~~i 243 (247)
+.....+.+.-.+.=.+++.|..+++|.+.+..|.-=.+=...-.++.+.+++.+
T Consensus 140 ~p~~~~~~~~~~~~i~~~~~eaA~~lGas~~~~~~~i~lP~~~p~i~~~~~l~~~ 194 (252)
T d2onkc1 140 VPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWA 194 (252)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHhhhHHHHHHHHhcCCCccccceEEEhHHhHHHHHHHHHHHHH
Confidence 3344445555555556789999999999998887665555555555555544443
No 2
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=20.16 E-value=87 Score=22.24 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHH
Q psy7370 189 VFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAV 238 (247)
Q Consensus 189 ~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~i 238 (247)
.......++.-.++-.+++.|.-+..|.+.|-.+.--.+=...-.+++..
T Consensus 96 ~p~~~~~~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~~p~i~~~~ 145 (203)
T d3dhwa1 96 APFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAA 145 (203)
T ss_dssp HHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHcCCchhhhhHHhhHHHhHHHHHHHH
Confidence 44444456666677778999999999999987775444433333333333
No 3
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=17.81 E-value=1.7e+02 Score=21.15 Aligned_cols=53 Identities=9% Similarity=0.012 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy7370 189 VFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS 241 (247)
Q Consensus 189 ~~~~~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~~~~i~~il~~ 241 (247)
+.....++..-.++-.+++.|.-+++|.+.+-.+.-=.+=...-.++++.+++
T Consensus 140 ~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~I~lP~~~p~i~~~~~l~ 192 (248)
T d3d31c1 140 MPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMT 192 (248)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhcchhHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555566667899999999999988775444444444444444433
No 4
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.19 E-value=1.3e+02 Score=15.71 Aligned_cols=18 Identities=22% Similarity=0.582 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy7370 226 FIDSIVVMIITAVLLSLL 243 (247)
Q Consensus 226 fl~~~~~~~i~~il~~~i 243 (247)
|+...++.++.++++.++
T Consensus 8 ~iAt~LFilvPt~FLliL 25 (36)
T d2axtm1 8 LIATALFVLVPSVFLIIL 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344555666666555544
No 5
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.45 E-value=1.3e+02 Score=21.40 Aligned_cols=39 Identities=8% Similarity=-0.038 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q psy7370 193 AMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIV 231 (247)
Q Consensus 193 ~~~v~~IV~EKE~~lke~m~mMGL~~~~~wlsWfl~~~~ 231 (247)
...+..++.++.-+|-+.++-.|+....|-.-|+++-|.
T Consensus 9 ~~~l~~ll~~~dp~L~~hl~~~~i~~~~~~~rW~~~lf~ 47 (188)
T d1fkma2 9 VKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLM 47 (188)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeeeeeHHHHHHHhh
Confidence 345677889999999999999999999999999876544
No 6
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.36 E-value=1.2e+02 Score=14.57 Aligned_cols=15 Identities=7% Similarity=0.255 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHH
Q psy7370 218 NGVHWTAWFIDSIVV 232 (247)
Q Consensus 218 ~~~~wlsWfl~~~~~ 232 (247)
..+.|+-|.....++
T Consensus 4 slaiw~fw~ffalli 18 (26)
T d1rzhh2 4 SLAIYSFWIFLAGLI 18 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345677775544433
No 7
>d1h5wa_ e.27.1.1 (A:) Upper collar protein gp10 (connector protein) {Bacteriophage phi-29 [TaxId: 10756]}
Probab=8.67 E-value=1.2e+02 Score=23.45 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchH
Q psy7370 196 CKSIVYEKQERLKEMMRVMGLSNG 219 (247)
Q Consensus 196 v~~IV~EKE~~lke~m~mMGL~~~ 219 (247)
+-.+..||+..+.|+|.+.|+++.
T Consensus 191 ~d~L~~~k~~~~nE~~t~LGI~n~ 214 (268)
T d1h5wa_ 191 VDKLNAQKNAVWNEMMTFLGIKNA 214 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred hHHHHHHHHHHHHHHHHHhCcccC
Confidence 344566999999999999998763
No 8
>d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=8.45 E-value=91 Score=17.93 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhCCch
Q psy7370 204 QERLKEMMRVMGLSN 218 (247)
Q Consensus 204 E~~lke~m~mMGL~~ 218 (247)
+.--|++++.|||.+
T Consensus 17 ~eAAk~la~kMGl~~ 31 (52)
T d1xrsb2 17 AEAAKQIALKMGLEE 31 (52)
T ss_dssp HHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHhCCCc
Confidence 345688899999875
No 9
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.82 E-value=1.8e+02 Score=15.64 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhCCchHHHH
Q psy7370 201 YEKQERLKEMMRVMGLSNGVHW 222 (247)
Q Consensus 201 ~EKE~~lke~m~mMGL~~~~~w 222 (247)
.|-+.+|.++++..|.++|.--
T Consensus 6 ~eEd~~L~~~v~~~G~~nW~~I 27 (47)
T d1x41a1 6 AQEEMALLEAVMDCGFGNWQDV 27 (47)
T ss_dssp HHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCccHHHH
Confidence 3556789999999998887654
No 10
>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.79 E-value=80 Score=17.17 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy7370 192 CAMICKSIVYEKQER 206 (247)
Q Consensus 192 ~~~~v~~IV~EKE~~ 206 (247)
.-.+++++|.|-|.|
T Consensus 26 ANrLIK~mVkedq~r 40 (41)
T d1j2jb_ 26 ANKLIKEMVQEDQKR 40 (41)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcc
Confidence 356788888887765
Done!