RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7370
         (247 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.7 bits (74), Expect = 0.13
 Identities = 41/226 (18%), Positives = 64/226 (28%), Gaps = 60/226 (26%)

Query: 13  GNLTRMEQAFFTVLQFF-----CGN---TSARHTLEEYKNNKCIDFNKIVPYNDSATAEN 64
             + + +Q     L  F      GN     A   L+E           I  Y  +     
Sbjct: 75  SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134

Query: 65  DAFLRMDNNTLWALIN------FTQPG-------Y-DKLKPTLTYSIRMSTTLIGDTYIS 110
             F +  N+ L+  +           G       Y ++L+    Y       L+GD  I 
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR--DLYQT--YHVLVGD-LIK 189

Query: 111 DHFYTLDPRSRPLYDL-KYITFGFAYLQDMVEQSIIQ--EHTGRK-----------STPG 156
               TL    R   D  K  T G          +I++  E+               S P 
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGL---------NILEWLENPSNTPDKDYLLSIPISCPL 240

Query: 157 IVLQQFPYPCYIEDQFIKAVSKTFP--LFMVLSWVFACAMICKSIV 200
           I + Q     Y+     K +  T P  L   L      +   + +V
Sbjct: 241 IGVIQL--AHYV--VTAKLLGFT-PGELRSYLKGATGHS---QGLV 278



 Score = 30.0 bits (67), Expect = 0.75
 Identities = 42/274 (15%), Positives = 81/274 (29%), Gaps = 106/274 (38%)

Query: 49  DFNKIVPYNDSATAENDA----------FL-----RMDNNT-------LWALIN-FTQ-- 83
            FNKI+P      A +D           FL      ++ +        L   +  F    
Sbjct: 36  QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95

Query: 84  -PGYD------KLKPTLTYSIRMSTTLIGDTYISDHFYTLDPRSRP----LY------DL 126
             G D      KL      ++  +  LI   YI+       P  +     L+      + 
Sbjct: 96  LEGNDIHALAAKLLQENDTTLVKTKELI-KNYITARIMAKRPFDKKSNSALFRAVGEGNA 154

Query: 127 K-YITFG-----FAYLQDMVE---------QSIIQEHTGR-----KSTP--------GIV 158
           +    FG       Y +++ +           +I+          ++T         G+ 
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214

Query: 159 LQQF----------PYPCYIEDQFIKAVSKTFPLFMVLSWVFAC-AMICKSIVYEKQERL 207
           + ++           Y   I       +S   PL  V+    A   +  K + +   E L
Sbjct: 215 ILEWLENPSNTPDKDYLLSI------PIS--CPLIGVIQ--LAHYVVTAKLLGFTPGE-L 263

Query: 208 KEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS 241
           +  ++  G +   H            ++TAV ++
Sbjct: 264 RSYLK--GAT--GHSQG---------LVTAVAIA 284


>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM:
           PF02562, ST genomics, PSI-2, protein structure
           initiative; 2.35A {Corynebacterium glutamicum atcc
           13032}
          Length = 208

 Score = 29.5 bits (67), Expect = 0.71
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 117 DPRSRPLYDLKYITFGFAYLQDMVEQSII 145
           DP  RPL+D          +  ++E  I+
Sbjct: 80  DPYLRPLHDALRDMVEPEVIPKLMEAGIV 108


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.7 bits (63), Expect = 2.5
 Identities = 24/216 (11%), Positives = 54/216 (25%), Gaps = 83/216 (38%)

Query: 37  HTLEEYKNNKCIDFNKIVPYNDSA--TAENDAFLRMDNNT------LWALIN-------- 80
              + + +N   D   +     S     E D  +   +         W L++        
Sbjct: 24  VFEDAFVDN--FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 81  FT----QPGYDKLKPTLTYSIRMSTTLIGDTYISDH---------FYTLD-PRSRPLYDL 126
           F     +  Y  L   +    R   +++   YI            F   +  R +P   L
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 127 KYITFGFAYLQDMVEQSIIQEHTGRKSTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVL 186
           +        L ++            +    +++             +    KT      +
Sbjct: 141 R------QALLEL------------RPAKNVLIDG-----------VLGSGKT-----WV 166

Query: 187 SWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHW 222
           +       +C S       +++  M        + W
Sbjct: 167 A-----LDVCLS------YKVQCKM-----DFKIFW 186



 Score = 27.5 bits (60), Expect = 5.7
 Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 7/51 (13%)

Query: 66  AFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTTLIGDTYISDHFYTL 116
             +R    T W   N+     DKL       I  S  ++        F  L
Sbjct: 335 ESIRDGLAT-W--DNWKHVNCDKLTTI----IESSLNVLEPAEYRKMFDRL 378


>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein,
           structural genomics, joint center for structural
           genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis}
           PDB: 3eqx_A*
          Length = 373

 Score = 27.1 bits (60), Expect = 6.3
 Identities = 4/20 (20%), Positives = 10/20 (50%)

Query: 135 YLQDMVEQSIIQEHTGRKST 154
           YL+ + +  +++E    K  
Sbjct: 331 YLKQLCDIGVLEEVQSGKEK 350


>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
           membrane protein, mitochondrial transport; HET: ACP LMT
           CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
          Length = 595

 Score = 26.8 bits (60), Expect = 9.0
 Identities = 7/32 (21%), Positives = 14/32 (43%)

Query: 216 LSNGVHWTAWFIDSIVVMIITAVLLSLLLVIT 247
           LS+G+   A     I +M   +  L+  ++  
Sbjct: 140 LSDGLRAGAQASVGISMMFFVSPNLATFVLSV 171


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,731,963
Number of extensions: 210272
Number of successful extensions: 405
Number of sequences better than 10.0: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 11
Length of query: 247
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,160,982
Effective search space: 649113192
Effective search space used: 649113192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.6 bits)