RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7370
         (247 letters)



>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase,
           small subunit C-terminal domain {Escherichia coli
           [TaxId: 562]}
          Length = 228

 Score = 25.9 bits (56), Expect = 3.8
 Identities = 12/60 (20%), Positives = 19/60 (31%)

Query: 166 CYIEDQFIKAVSKTFPLFMVLSWVFACAMICKSIVYEKQERLKEMMRVMGLSNGVHWTAW 225
                   + V K  P  + LS        C   +   Q+ L+  + V G+  G    A 
Sbjct: 66  IVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLAL 125


>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
           enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
          Length = 257

 Score = 26.2 bits (58), Expect = 3.9
 Identities = 4/19 (21%), Positives = 13/19 (68%)

Query: 170 DQFIKAVSKTFPLFMVLSW 188
           D+F++AV+  + +  ++ +
Sbjct: 214 DEFMEAVTSRYGMNCLIQF 232


>g1bev.1 b.121.4.1 (4:,2:) Bovine enterovirus coat proteins {Bovine
           enterovirus, VG-5-27 [TaxId: 12064]}
          Length = 284

 Score = 26.0 bits (57), Expect = 4.1
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 48  IDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRMSTTLIGDT 107
           I++N I  Y+ +A+A   A  + D         FTQP  D +K    YS R++   +G++
Sbjct: 3   INYNNINYYSHAASA---AQNKQDFTQ--DPSKFTQPIADVIKEACGYSDRVAQLTLGNS 57

Query: 108 YI 109
            I
Sbjct: 58  TI 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 917,581
Number of extensions: 41705
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 10
Length of query: 247
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,268,006
Effective search space: 207952984
Effective search space used: 207952984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)