BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7372
(352 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9R1A0|CCNH_RAT Cyclin-H OS=Rattus norvegicus GN=Ccnh PE=2 SV=2
Length = 323
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/266 (46%), Positives = 175/266 (65%), Gaps = 5/266 (1%)
Query: 39 EAELIALREAANQNFILEHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPM 98
E +L LR AN+ F + A FL EE L ++Y+ +L +FC F P M
Sbjct: 16 EEQLARLRADANRKFKCKAVANGKVLPNDPLFLEPHEEMTLCKYYEKRLLEFCSVFKPAM 75
Query: 99 PKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGD--- 155
P+ V+GTA Y KRFYLNNSVM+YHP+ I++TC +LACKV+EFN+S QFV N++
Sbjct: 76 PRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLG 135
Query: 156 QQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTR-SQLRDPDRLRPGIDEFL 214
Q+KA + IL ELLL+QQL +HL VHNPYRP EGFLIDIKTR L +P+ LR D+FL
Sbjct: 136 QEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDIKTRYPMLENPEILRKTADDFL 195
Query: 215 DKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVRKI 274
++ LTDA LL++PSQIAL A+L SAS+ +++Y++++L+ + L L++ ++ +
Sbjct: 196 SRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSM 255
Query: 275 RTLVSKPIESPSREMFKQLEKRLEKC 300
R LV K E P E L+++LE+C
Sbjct: 256 RNLVKK-YEPPRSEEVAILKQKLERC 280
>sp|P51946|CCNH_HUMAN Cyclin-H OS=Homo sapiens GN=CCNH PE=1 SV=1
Length = 323
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/268 (46%), Positives = 177/268 (66%), Gaps = 5/268 (1%)
Query: 37 SVEAELIALREAANQNFILEHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSP 96
S E +L LR AN+ F + A FL EE L ++Y+ +L +FC F P
Sbjct: 14 SSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKP 73
Query: 97 PMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGD- 155
MP+ V+GTA Y KRFYLNNSVM+YHP+ I++TC +LACKV+EFN+S QFV N++
Sbjct: 74 AMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESP 133
Query: 156 --QQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQ-LRDPDRLRPGIDE 212
Q+KA + IL ELLL+QQL +HL VHNPYRP EGFLID+KTR L +P+ LR D+
Sbjct: 134 LGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADD 193
Query: 213 FLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVR 272
FL+++ LTDA LL++PSQIAL A+L SAS+ +++Y++++L+ + L L++ ++
Sbjct: 194 FLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMK 253
Query: 273 KIRTLVSKPIESPSREMFKQLEKRLEKC 300
+R LV K E P E L+++LE+C
Sbjct: 254 SMRNLVKK-YEPPRSEEVAVLKQKLERC 280
>sp|Q4R7U4|CCNH_MACFA Cyclin-H OS=Macaca fascicularis GN=CCNH PE=2 SV=1
Length = 323
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/268 (46%), Positives = 177/268 (66%), Gaps = 5/268 (1%)
Query: 37 SVEAELIALREAANQNFILEHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSP 96
S E +L LR AN+ F + A FL EE L ++Y+ +L +FC F P
Sbjct: 14 SSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKP 73
Query: 97 PMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGD- 155
MP+ V+GTA Y KRFYLNNSVM+YHP+ I++TC +LACKV+EFN+S QFV N++
Sbjct: 74 AMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESP 133
Query: 156 --QQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQ-LRDPDRLRPGIDE 212
Q+KA + IL ELLL+QQL +HL VHNPYRP EGFLID+KTR L +P+ LR D+
Sbjct: 134 LGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADD 193
Query: 213 FLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVR 272
FL+++ LTDA LL++PSQIAL A+L SAS+ +++Y++++L+ + L L++ ++
Sbjct: 194 FLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLRENRTCLSQLLDIMK 253
Query: 273 KIRTLVSKPIESPSREMFKQLEKRLEKC 300
+R LV K E P E L+++LE+C
Sbjct: 254 SMRNLVKK-YEPPRSEEVAVLKQKLERC 280
>sp|Q3ZBL9|CCNH_BOVIN Cyclin-H OS=Bos taurus GN=CCNH PE=2 SV=1
Length = 320
Score = 231 bits (589), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 123/266 (46%), Positives = 175/266 (65%), Gaps = 5/266 (1%)
Query: 39 EAELIALREAANQNFILEHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPM 98
E +L LR AN+ F + A FL EE L ++Y+ +L +FC F P M
Sbjct: 16 EEQLARLRADANRKFKCKAVANGKVLPNDPVFLEPHEEITLCKYYEKRLLEFCSVFKPAM 75
Query: 99 PKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGD--- 155
P+ V+GTA Y KRFYLNNSVM+YHP+ I++TC +LACKV+EFN+S QFV N++
Sbjct: 76 PRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLG 135
Query: 156 QQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQ-LRDPDRLRPGIDEFL 214
Q+K + IL ELLL+QQL +HL VHNPYRP EGFLID+KTR L +P+ LR D+FL
Sbjct: 136 QEKTLEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPLLENPEILRKTADDFL 195
Query: 215 DKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVRKI 274
+++ LTDA LL++PSQIAL A+L SAS+ +++Y++++L+ + L L++ ++ +
Sbjct: 196 NRVALTDAHLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTSLSQLLDIMKSM 255
Query: 275 RTLVSKPIESPSREMFKQLEKRLEKC 300
R LV K E P E L+++LE+C
Sbjct: 256 RNLVKK-YEPPRPEEVAALKQKLERC 280
>sp|Q61458|CCNH_MOUSE Cyclin-H OS=Mus musculus GN=Ccnh PE=2 SV=2
Length = 323
Score = 231 bits (588), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 123/266 (46%), Positives = 175/266 (65%), Gaps = 5/266 (1%)
Query: 39 EAELIALREAANQNFILEHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPM 98
E +L LR AN+ F + A FL EE L ++Y+ +L +FC F P M
Sbjct: 16 EEQLARLRADANRKFKCKAVANGKVLPNDPVFLEPHEELTLCKYYEKRLLEFCSVFKPAM 75
Query: 99 PKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGD--- 155
P+ V+GTA Y KRFYLNNSVM+YHP+ I++TC +LACKV+EFN+S QFV N++
Sbjct: 76 PRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLG 135
Query: 156 QQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTR-SQLRDPDRLRPGIDEFL 214
Q++A + IL ELLL+QQL +HL VHNPYRP EGFLIDIKTR L +P+ LR D+FL
Sbjct: 136 QERALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDIKTRYPMLENPEILRKTADDFL 195
Query: 215 DKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVRKI 274
++ LTDA LL++PSQIAL A+L SAS+ +++Y++++L+ + L L++ ++ +
Sbjct: 196 SRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSM 255
Query: 275 RTLVSKPIESPSREMFKQLEKRLEKC 300
R LV K E P + L+++LE+C
Sbjct: 256 RNLVKK-YEPPRSDEVAVLKQKLERC 280
>sp|P51947|CCNH_XENLA Cyclin-H OS=Xenopus laevis GN=ccnh PE=1 SV=1
Length = 323
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/235 (50%), Positives = 165/235 (70%), Gaps = 7/235 (2%)
Query: 71 LSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVT 130
L EE + ++Y+ +L DFC F P MPK V+GTA Y KRFYLNNSVM++HP+ I++T
Sbjct: 48 LEPHEELAICKYYEKRLLDFCNAFKPTMPKSVLGTACMYFKRFYLNNSVMEHHPRIIMLT 107
Query: 131 CVYLACKVEEFNLSISQFVSNIKGD---QQKASDIILNNELLLMQQLKYHLTVHNPYRPV 187
CV+LACKV+EFN+S QFV N+ + Q+K + IL ELLL+QQL +HL VHNPYRP
Sbjct: 108 CVFLACKVDEFNVSSIQFVGNLGENPLGQEKILEQILEYELLLIQQLNFHLIVHNPYRPF 167
Query: 188 EGFLIDIKTR-SQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQEN 246
EGFLID+KTR L +P+ LR DEFL+++ LTDACLLF+PS IAL A+L +AS+ N
Sbjct: 168 EGFLIDVKTRYPMLENPEVLRKSADEFLNRVALTDACLLFAPSVIALTAILSTASRAGLN 227
Query: 247 LDAYVTQTLLGQHANVRLVDLIEAVRKIRTLVSKPIESPSR-EMFKQLEKRLEKC 300
+++Y+T+ L + + L++ +R+++ LVSK P+R E L+KRL+ C
Sbjct: 228 MESYLTECLSLKDNQETMSHLLDGMRRLKILVSK--YEPARPEEVAALKKRLDHC 280
>sp|Q9GP34|CCNH_ECHMU Probable cyclin-H OS=Echinococcus multilocularis GN=CYCH PE=2 SV=1
Length = 335
Score = 151 bits (382), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 153/273 (56%), Gaps = 23/273 (8%)
Query: 63 DEEASEHFLSASEERVLVRHYQLQLRDFCKRFS-PPMPKVVIGTAFHYLKRFYLNNSVMD 121
D A FL+A EE ++V+ Y +++ +FS +P V G A YLKRFYLNNSVMD
Sbjct: 48 DVPAEPTFLTAEEEFIIVKRYIFAMKELFHQFSDSGLPVDVFGFAATYLKRFYLNNSVMD 107
Query: 122 YHPKEILVTCVYLACKVEEFNLSISQFVSNIKGDQQKASDIILNNELLLMQQLKYHLTVH 181
Y P+E+++T +YLACK ++ L + F ++I +++ S+I++++EL LM++L+Y + +H
Sbjct: 108 YFPREMMLTALYLACKAADYPLGLQTFAAHIPRNREHYSEIVVHSELFLMEKLQYDIWIH 167
Query: 182 NPYRPVEGFLIDIKT--RSQLRDPDRLRPG----ID----------EFLDKMFLTDACLL 225
PYRP+ G L+D+ ++QL +P + G D E + K F TD CL
Sbjct: 168 TPYRPLSGLLVDLLAYRKTQLGEPMTIEAGEVATADMMTSLKKEGYEIIHKWFQTDLCLT 227
Query: 226 FSPSQIALAAVLQSASKLQE-NLDAYVTQTLLGQHANVRLVD-----LIEAVRKIRTLVS 279
SPSQ ALA +L+ K + ++ +V ++ +++ L++ L E + +I+T++
Sbjct: 228 HSPSQFALAVLLELGQKHPDLGVEKFVKNSVCEYNSSDELMEQKWTALNEKMEQIQTMIG 287
Query: 280 KPIESPSREMFKQLEKRLEKCRNQANNPDSHIY 312
+ LE L +CRN +P S Y
Sbjct: 288 EFEFLSDLTYGSDLEAVLMQCRNPLYDPLSEEY 320
>sp|Q10D80|CCH11_ORYSJ Cyclin-H1-1 OS=Oryza sativa subsp. japonica GN=CYCH1-1 PE=1 SV=1
Length = 330
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 139/237 (58%), Gaps = 15/237 (6%)
Query: 71 LSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVT 130
LS EER++ Y+ ++++ C F P + TA Y KRFYL SVM++HPK I++T
Sbjct: 71 LSCEEERLMRVFYEQKIQEVCSAFK--FPHKIQATAIIYFKRFYLQWSVMEHHPKHIMLT 128
Query: 131 CVYLACKVEEFNLSISQFVSNIKGDQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGF 190
C+Y +CKVEE ++S + I+ D Q IILNNE+++++ L + L V+ PYR +EGF
Sbjct: 129 CIYSSCKVEENHVSAEELGKGIQQDHQ----IILNNEMIVLKSLDFDLIVYAPYRSIEGF 184
Query: 191 LIDIKTRSQLRDPDR-----LRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQE 245
+ D++ + + + LR +DKM LTDA LL++P Q+ALAA L ++ + +
Sbjct: 185 VDDMEDFCRAGNGEHQRLQDLRQTAISQVDKMMLTDAPLLYTPGQLALAA-LHKSNDMHK 243
Query: 246 --NLDAYVTQTLLGQHANVRLVDLIEAVRKIRTLVSKPIESPSREMFKQLEKRLEKC 300
N + Y+ QH++ + + ++ I LV + ++ P+ + + ++++L+ C
Sbjct: 244 ILNFERYLESVFSRQHSDCPIEQFVGSINMINYLVEQ-LKIPTPKDMRHIDRKLKHC 299
>sp|Q8W5S1|CCH11_ARATH Cyclin-H1-1 OS=Arabidopsis thaliana GN=CYCH1-1 PE=1 SV=1
Length = 336
Score = 137 bits (346), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 138/251 (54%), Gaps = 13/251 (5%)
Query: 71 LSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVT 130
LSA EER + Y+ ++++ C F+ P + TA Y KRFYL SVM +HPKEI++T
Sbjct: 71 LSADEERFMRAFYEAKVQEVCSAFA--FPHKIQATALQYFKRFYLQWSVMQHHPKEIMLT 128
Query: 131 CVYLACKVEEFNLSISQFVSNIKGDQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGF 190
CVY ACK+EE ++S + I D + IIL E+ ++Q L++ L V+ PYR +EGF
Sbjct: 129 CVYAACKIEENHVSAEEIGKGINQDHR----IILKYEMAVLQSLEFDLIVYAPYRAIEGF 184
Query: 191 LIDIKTRSQLRDP-----DRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQE 245
+ +++ Q RD + L G DK+ LTDA LLF P Q+ALA++ + L
Sbjct: 185 VNNMEEFLQARDDEIQKLESLLKGATAEADKVMLTDAPLLFPPGQLALASLRIANGVLGV 244
Query: 246 -NLDAYVTQTLLGQHANVRLVDLIEAVRKIRTLVSKPIESPSREMFKQLEKRLEKCRNQA 304
+ D Y+ + ++ +L + + I LV K + PS + K + ++L+ C +
Sbjct: 245 IDFDRYLENIVSQPNSEHTTSELTKLLDNIEYLV-KNYKCPSEKDMKHINRKLKSCLGHS 303
Query: 305 NNPDSHIYKER 315
++ D +E+
Sbjct: 304 SSHDESKKREK 314
>sp|P37366|CCL1_YEAST Cyclin CCL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=CCL1 PE=1 SV=1
Length = 393
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 25/209 (11%)
Query: 38 VEAELIALREAANQNFILEHRAELTDEE-----ASEHFLSASEERVLVRHYQLQLRDFCK 92
+E L+ REA N LT+EE A L+ EE LV Y +++ +
Sbjct: 80 IEENLLKFREAHN----------LTEEEIKVLEAKAIPLTMEEELDLVNFYAKKVQVIAQ 129
Query: 93 RFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNI 152
+ +P V+ TA + +RF+L NSVM PK I+ T ++LACK E + +S+ F
Sbjct: 130 HLN--LPTEVVATAISFFRRFFLENSVMQIDPKSIVHTTIFLACKSENYFISVDSFAQKA 187
Query: 153 KGDQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKT----RSQLRDPDRLRP 208
K + D +L E L++ LK+ L H+PY+P+ GF +DI+ + L ++
Sbjct: 188 KSTR----DSVLKFEFKLLESLKFSLLNHHPYKPLHGFFLDIQNVLYGKVDLNYMGQIYD 243
Query: 209 GIDEFLDKMFLTDACLLFSPSQIALAAVL 237
+ + LTD ++P QI LA +L
Sbjct: 244 RCKKRITAALLTDVVYFYTPPQITLATLL 272
>sp|Q55F19|CCNH_DICDI Putative cyclin-H OS=Dictyostelium discoideum GN=cycH PE=3 SV=1
Length = 286
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 108/203 (53%), Gaps = 21/203 (10%)
Query: 45 LREAANQNFILEHRAELTDEEASE--HFLSASEERVLVRHYQLQLRDFCKRFSPPMPKVV 102
LRE N +H+ + ++ S + LS +E L+ +Y+ + + + +P V
Sbjct: 22 LREQCNN----QHKQVILEKTPSSEPNILSPDDELSLIHYYETKTLEIAMALN--LPDKV 75
Query: 103 IGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGDQQKASDI 162
A Y+KRFYL NS+M Y K ++++C+++ACK E+ +L I + SNI + SDI
Sbjct: 76 SAPAIIYIKRFYLKNSIMQYGAKLVMLSCLFIACKTEDNHLDI-DYYSNIT--KASPSDI 132
Query: 163 ILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDP---------DRLRPGIDEF 213
N E+++++ L ++L V++P+RP+ G+++DI S + + D L +
Sbjct: 133 T-NLEIIILESLNFNLIVYHPFRPMYGYILDINDNSAIYNNTNGVSPIKFDTLWETCKKS 191
Query: 214 LDKMFLTDACLLFSPSQIALAAV 236
+ K +D C F P IALA +
Sbjct: 192 IQKSLFSDCCFEFHPQIIALACL 214
>sp|P36613|CGM2_SCHPO Cyclin mcs2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mcs2 PE=1 SV=1
Length = 322
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 8/172 (4%)
Query: 71 LSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVT 130
L+ EE LV +Y QL S +P + TA + KRFYL NSVM+Y PK I T
Sbjct: 61 LTVEEELELVNYYSFQLNALSSALS--LPTHIRSTAILFFKRFYLINSVMEYSPKIISFT 118
Query: 131 CVYLACKVEEFNLSISQFVSNIKGDQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGF 190
++LA K + +SI QF N+ + + +L E + Q LK+ L V P+RP++GF
Sbjct: 119 SLFLATKCNDHYISIEQFCKNMP---KTTPEEVLEYEFNVCQSLKWDLYVWLPFRPLQGF 175
Query: 191 LIDIKTRSQLRDPDRLRPGID---EFLDKMFLTDACLLFSPSQIALAAVLQS 239
L+D +T ++ D +FL + +D L SPS IAL A+ +
Sbjct: 176 LLDCQTVLPKVAVEKFYECHDLSKKFLIETLHSDIYFLHSPSIIALGAIYHT 227
>sp|Q86KE7|CCNC_DICDI Cyclin-C OS=Dictyostelium discoideum GN=cycC PE=3 SV=1
Length = 255
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 104/210 (49%), Gaps = 17/210 (8%)
Query: 68 EHFLSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEI 127
+ +L+ E + L HY +++ + + I TA Y KRFYL NS +D P+ +
Sbjct: 29 KQYLTPIELKKLRTHYCFVIQNLGNALK--LRQRAISTAIVYFKRFYLKNSFVDCEPRLV 86
Query: 128 LVTCVYLACKVEEFNLSISQFVSNIKGDQQKASDI---ILNNELLLMQQLKYHLTVHNPY 184
VTC+YL+ KVEE + + +K + + IL E ++++L + L +++PY
Sbjct: 87 AVTCLYLSSKVEECITQAKKCAAKMKEIDHSFNYLMNDILECEFFVLEELDFCLIIYHPY 146
Query: 185 RPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQ 244
+ + +L +S DP + I ++ + TD CLL+ P + L +L + L+
Sbjct: 147 KSLPFYL-----QSSGLDPASIEI-IWGIVNDSYRTDVCLLYPPFVVGLGCILLGSYLLK 200
Query: 245 ENLDAYVTQTLLGQHANVRLVDLIEAVRKI 274
+++ ++++ NV + D+ E + +
Sbjct: 201 KDIKQWLSEL------NVEMKDIWEVSKDL 224
>sp|A4RD79|SSN8_MAGO7 RNA polymerase II holoenzyme cyclin-like subunit OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=SSN8 PE=3 SV=1
Length = 363
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 21/172 (12%)
Query: 75 EERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYL 134
E R L ++ Q+ K S + + I TA Y+KRFY + +P +LVT VYL
Sbjct: 43 EWRHLYNYFNYQMLRLAKNLS--IRQQAIATAQVYMKRFYTRVEIRSTNPTLVLVTAVYL 100
Query: 135 ACKVEEFNLSISQFVSNIKGDQQKASDI---------ILNNELLLMQQLKYHLTVHNPYR 185
ACK+EE L I N+ + +K + I E L+ ++ L VH PYR
Sbjct: 101 ACKMEEMPLHI----RNVSLEAKKVWPMETPSLEIAKIGECEFWLISEMSAQLIVHQPYR 156
Query: 186 PVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVL 237
+ D QL + D + FL+ F+TD LL++P IALAA++
Sbjct: 157 TLTALQQDF----QLANDDHVL--AVSFLNDHFMTDLPLLYAPHTIALAAIM 202
>sp|O74627|CG1C_SCHPO Cyclin pch1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pch1 PE=1 SV=1
Length = 342
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 20/153 (13%)
Query: 98 MPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEE---------FNLS-ISQ 147
+P+ + TA Y RFYL S+ +YH E+ TC++LA KVE+ N + ++Q
Sbjct: 60 LPQTALATANIYFHRFYLRFSLKNYHYYEVAATCIFLATKVEDSVRKLRDIVINCAKVAQ 119
Query: 148 FVSNIKGDQQ-----KASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRD 202
SN+ D+Q + D+IL E +L++ L + TV +PY V F+ + + D
Sbjct: 120 KNSNVLVDEQTKEYWRWRDVILYTEEVLLEALCFDFTVEHPYPYVLSFI-----KKFVAD 174
Query: 203 PDRLRPGIDEFLDKMFLTDACLLFSPSQIALAA 235
+ +++ + ACLL+SP IA AA
Sbjct: 175 DKNVTKVAWTYINDSTRSIACLLYSPKTIAAAA 207
>sp|P93411|CCC11_ORYSJ Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os09g0504400 PE=2
SV=1
Length = 257
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 13/141 (9%)
Query: 102 VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIK----GDQQ 157
VI TA Y +R Y S+ +Y P+ + TC+YLA KVEE + V IK D++
Sbjct: 61 VIATAVTYFRRVYTRKSMTEYDPRLVAPTCLYLASKVEESTVQARLLVFYIKKMCASDEK 120
Query: 158 KASDI--ILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLD 215
+I IL E+ L++ L Y+L V++PYRP+ L D + + D + GI ++
Sbjct: 121 YRFEIKDILEMEMKLLEALDYYLVVYHPYRPLLQLLQD----AGITDLTQFAWGI---VN 173
Query: 216 KMFLTDACLLFSPSQIALAAV 236
+ D L+ P IALA +
Sbjct: 174 DTYKMDLILIHPPYMIALACI 194
>sp|P25008|CCNC_DROME Cyclin-C OS=Drosophila melanogaster GN=CycC PE=1 SV=1
Length = 267
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 84/189 (44%), Gaps = 24/189 (12%)
Query: 102 VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFN-------LSISQFVSNIKG 154
VI TA Y KRFY NS+ + P + TC+ LA KVEEF +SI Q K
Sbjct: 61 VIATATVYFKRFYARNSLKNIDPLLLAPTCILLASKVEEFGVISNSRLISICQSAIKTKF 120
Query: 155 DQQKASDI------ILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRP 208
A + IL E L++ L L V+ PYRP+ + D+ QL
Sbjct: 121 SYAYAQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDMGQEDQLLTLSW--- 177
Query: 209 GIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQHANVRLVDLI 268
++ TD CLL+ P QIA+A + + LQ++ T+ + NV L +
Sbjct: 178 ---RIVNDSLRTDVCLLYPPYQIAIACLQIACVILQKD----ATKQWFAE-LNVDLDKVQ 229
Query: 269 EAVRKIRTL 277
E VR I L
Sbjct: 230 EIVRAIVNL 238
>sp|P0C654|CCNC_CAEBR Cyclin-C OS=Caenorhabditis briggsae GN=cic-1 PE=3 SV=1
Length = 298
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 18/153 (11%)
Query: 102 VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEF-NLSISQFVSN--------- 151
VI TA Y KRFYL S D P + T ++LACKVEE LS+S F+ N
Sbjct: 70 VIATAIVYFKRFYLRQSFRDMCPFLVASTALFLACKVEEHTTLSVSSFLKNTALVLPKRW 129
Query: 152 -IKGDQQKASDIIL-NNELLLMQQLKYHLTVHNPYRPVEGFLIDIK------TRSQLRDP 203
+ + A + +L ++E +L++ L L VH+ RP+ L D K T + ++D
Sbjct: 130 GVAFETNSAKNGVLYDSEFILVEILDCCLVVHHATRPMFELLEDWKQHTLTSTNTPVKDF 189
Query: 204 DRLRPGIDEFLDKMFLTDACLLFSPSQIALAAV 236
D++ + ++ D L+F+P I LA++
Sbjct: 190 DQIEIQCQKVVNDTLRCDVGLMFAPHCIGLASI 222
>sp|Q9TYP2|CCNC_CAEEL Cyclin-C OS=Caenorhabditis elegans GN=cic-1 PE=3 SV=2
Length = 302
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 101/220 (45%), Gaps = 28/220 (12%)
Query: 102 VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEF-NLSISQFVSNIK------- 153
VI TA Y KRFYL S D P + T ++LACKVEE LS+S F+ N
Sbjct: 70 VIATAIIYFKRFYLRQSFRDMCPFLVASTALFLACKVEEHTTLSVSSFLKNTAIVLPKRW 129
Query: 154 ----GDQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQ--------LR 201
+ ++ ++E +L++ L L VH+ RP+ L D+K +Q ++
Sbjct: 130 GVTFETTSTKNGVVYDSEFILVEILDCCLVVHHASRPMFELLEDLKQFTQQSTIANQPIK 189
Query: 202 DPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKL--QENLDAYVTQTLLGQH 259
D + + + + D L+F P I L++++ + + E L+A++ +
Sbjct: 190 DLEAIEAQCQKVANDSLRCDVSLIFPPHVIGLSSIMVAMELMGRGEELEAWLVEVDTDFE 249
Query: 260 ANVRLVDLIEAVRKIRTLVSKPIESPSREMFKQLEKRLEK 299
++ D +E + K+ TL E +E K+L +L K
Sbjct: 250 ---KVTDCVEQIYKMYTLWKSFDE---KEEVKKLMAKLPK 283
>sp|Q6FJE8|SSN8_CANGA RNA polymerase II holoenzyme cyclin-like subunit OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=SSN8 PE=3 SV=1
Length = 339
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 28/175 (16%)
Query: 103 IGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSN--------IKG 154
+ TA YL RF L SV + + ++ TCVYLACKVEE I VS I
Sbjct: 114 LATAHIYLSRFLLKASVREVNLYLLVTTCVYLACKVEECPQYIRTLVSEARSLWPEFIPP 173
Query: 155 DQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDE-- 212
D K ++ E L+++L+ +L VH+PY+ +E + +K +P +L DE
Sbjct: 174 DPTKVTEF----EFYLIEELQCYLIVHHPYKSMEQIVEALK-----EEPFKLTFTSDELQ 224
Query: 213 ----FLDKMFLTDACLLFSPSQIALAAV-----LQSASKLQENLDAYVTQTLLGQ 258
++ F+ D L ++P IA+A + +Q ++ + +L + VT+TL Q
Sbjct: 225 NCWSLINDSFINDVHLTYAPHIIAMACLFITVSIQGSNTKELSLTSAVTETLTSQ 279
>sp|Q29AI1|CCNC_DROPS Cyclin-C OS=Drosophila pseudoobscura pseudoobscura GN=CycC PE=3
SV=1
Length = 267
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 102 VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFN-------LSISQFVSNIKG 154
VI TA Y KRFY NS+ + P + TC+ LA KVEEF +SI Q S IK
Sbjct: 61 VIATATVYFKRFYARNSLKNIDPLLLAPTCILLASKVEEFGVISNSRLISICQ--SAIKT 118
Query: 155 DQQKA--------SDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRL 206
A ++ IL E L++ L L V+ PYRP+ + D+ QL
Sbjct: 119 KFSYAYTQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLVQDMGQEDQLLTLSW- 177
Query: 207 RPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQHANVRLVD 266
++ TD CLL+ P QIA+A + + LQ++ T+ + NV L
Sbjct: 178 -----RIVNDSLRTDVCLLYPPYQIAIACLQIACVILQKD----STKQWFAE-LNVDLDK 227
Query: 267 LIEAVRKIRTL 277
+ E VR I L
Sbjct: 228 VQEIVRAIVNL 238
>sp|P39947|CCNC_RAT Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2
Length = 278
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 71/148 (47%), Gaps = 19/148 (12%)
Query: 102 VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLS-----ISQFVSNIKGDQ 156
VI TA Y KRFY S+ P + TCV+LA KVEEF + I+ S +K
Sbjct: 56 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTSLIAATTSVLKTRF 115
Query: 157 QKAS--------DIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRP 208
AS + IL E L++ + L V++PYRP+ ++ D+ D L P
Sbjct: 116 SYASPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE------DVLLP 169
Query: 209 GIDEFLDKMFLTDACLLFSPSQIALAAV 236
++ + TD CLL+ P IALA +
Sbjct: 170 LAWRIVNDTYRTDLCLLYPPFMIALACL 197
>sp|Q9FJK6|CCC11_ARATH Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=2 SV=2
Length = 253
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 85/156 (54%), Gaps = 14/156 (8%)
Query: 102 VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIK---GDQQK 158
V+ TA Y++R Y+ S++++ P+ + +TC+YLA K EE + V IK D+
Sbjct: 61 VVATAITYMRRVYIRKSMVEFEPRLVALTCLYLASKAEESIVQARNLVFYIKRLYPDEYN 120
Query: 159 ASDI--ILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDP--DRLRPGIDEFL 214
++ IL E+ +++ L Y+L V +PYR + FL D + L D +++ GI +
Sbjct: 121 KYELKDILGMEMKVLEALDYYLVVFHPYRSLSEFLQD----AALNDVNMNQITWGI---V 173
Query: 215 DKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAY 250
+ + D L+ P +IALA + ++ ++++ A+
Sbjct: 174 NDTYKMDLILVHPPYRIALACIYIASVHREKDITAW 209
>sp|Q16JA2|CCNC_AEDAE Cyclin-C OS=Aedes aegypti GN=CycC PE=3 SV=1
Length = 265
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 19/165 (11%)
Query: 102 VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFN-LSISQFVSN----IKGDQ 156
VI TA Y KRFY NS+ P + TC+ LA KVEEF +S S+ ++ IK
Sbjct: 61 VIATATVYFKRFYARNSLKCIDPLLLAPTCILLASKVEEFGVISNSRLITTCQTVIKNKF 120
Query: 157 QKA--------SDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRP 208
A ++ IL E L++ L L V+ PYRP+ + DI D+L
Sbjct: 121 SYAYQQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLIQDIGQE------DQLLT 174
Query: 209 GIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQ 253
++ TD LL+ P QIA+ + + LQ+ L A+ +
Sbjct: 175 LTWRLINDSLRTDVSLLYPPYQIAIGCLQIACVILQKELKAWFAE 219
>sp|P55168|CCNC_CHICK Cyclin-C OS=Gallus gallus GN=CCNC PE=2 SV=1
Length = 283
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 102 VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLS-----ISQFVSNIKGDQ 156
VI TA Y KRFY S+ P + TCV+LA KVEEF + IS S +K
Sbjct: 61 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRF 120
Query: 157 QKA--------SDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRP 208
A + IL E L++ + L V++PYRP+ ++ D+ D L P
Sbjct: 121 SYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE------DMLLP 174
Query: 209 GIDEFLDKMFLTDACLLFSPSQIALAAV 236
++ + TD CLL+ P IALA +
Sbjct: 175 LAWRIVNDTYRTDLCLLYPPFMIALACL 202
>sp|Q4KLA0|CCNC_XENLA Cyclin-C OS=Xenopus laevis GN=ccnc PE=2 SV=1
Length = 283
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 102 VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLS-----ISQFVSNIKGDQ 156
VI TA Y KRFY S+ P + TCV+LA KVEEF + IS S +K
Sbjct: 61 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRF 120
Query: 157 QKA--------SDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRP 208
A + IL E L++ + L V++PYRP+ ++ D+ D L P
Sbjct: 121 SYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE------DMLLP 174
Query: 209 GIDEFLDKMFLTDACLLFSPSQIALAAV 236
++ + TD CLL+ P IALA +
Sbjct: 175 LAWRIVNDTYRTDLCLLYPPFMIALACL 202
>sp|Q28F72|CCNC_XENTR Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1
Length = 283
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 102 VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLS-----ISQFVSNIKGDQ 156
VI TA Y KRFY S+ P + TCV+LA KVEEF + IS S +K
Sbjct: 61 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLISAATSVLKTRF 120
Query: 157 QKA--------SDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRP 208
A + IL E L++ + L V++PYRP+ ++ D+ D L P
Sbjct: 121 SYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE------DMLLP 174
Query: 209 GIDEFLDKMFLTDACLLFSPSQIALAAV 236
++ + TD CLL+ P IALA +
Sbjct: 175 LAWRIVNDTYRTDLCLLYPPFMIALACL 202
>sp|P24863|CCNC_HUMAN Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2
Length = 283
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 102 VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLS-----ISQFVSNIKGDQ 156
VI TA Y KRFY S+ P + TCV+LA KVEEF + I+ S +K
Sbjct: 61 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF 120
Query: 157 QKA--------SDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRP 208
A + IL E L++ + L V++PYRP+ ++ D+ D L P
Sbjct: 121 SYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE------DMLLP 174
Query: 209 GIDEFLDKMFLTDACLLFSPSQIALAAV 236
++ + TD CLL+ P IALA +
Sbjct: 175 LAWRIVNDTYRTDLCLLYPPFMIALACL 202
>sp|Q62447|CCNC_MOUSE Cyclin-C OS=Mus musculus GN=Ccnc PE=2 SV=4
Length = 283
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 102 VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLS-----ISQFVSNIKGDQ 156
VI TA Y KRFY S+ P + TCV+LA KVEEF + I+ S +K
Sbjct: 61 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAATTSVLKTRF 120
Query: 157 QKA--------SDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRP 208
A + IL E L++ + L V++PYRP+ ++ D+ D L P
Sbjct: 121 SYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE------DVLLP 174
Query: 209 GIDEFLDKMFLTDACLLFSPSQIALAAV 236
++ + TD CLL+ P IALA +
Sbjct: 175 LAWRIVNDTYRTDLCLLYPPFMIALACL 202
>sp|Q3ZCK5|CCNC_BOVIN Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1
Length = 283
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 102 VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLS-----ISQFVSNIKGDQ 156
VI TA Y KRFY S+ P + TCV+LA KVEEF + I+ S +K
Sbjct: 61 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF 120
Query: 157 QKA--------SDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRP 208
A + +L E L++ + L V++PYRP+ ++ D+ D L P
Sbjct: 121 SYAFPKEFPYKMNHVLECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE------DMLLP 174
Query: 209 GIDEFLDKMFLTDACLLFSPSQIALAAV 236
++ + TD CLL+ P IALA +
Sbjct: 175 LAWRIVNDTYRTDLCLLYPPFMIALACL 202
>sp|Q9HE63|SSN8_NEUCR RNA polymerase II holoenzyme cyclin-like subunit OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=ssn-8 PE=3 SV=2
Length = 345
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 58 RAELTDEEASEHFLSASEERVLVRH----YQLQLRDFCKRFSPPMPKVVIGTAFHYLKRF 113
RA+L EA E L AS +RH + Q+ KR + + + TA Y+KRF
Sbjct: 25 RAKL---EAEEPNLVASFPLPQLRHLNIYFNQQINRLGKRMG--LRQQALATAQVYIKRF 79
Query: 114 YLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKG----DQQKASDI--ILNNE 167
Y + +P +LVT +YLACK+EE I + +G D Q +++ I E
Sbjct: 80 YTKVEIRRTNPHHVLVTALYLACKMEECPQHIRLMANEARGFWPTDFQSQTEVARIGECE 139
Query: 168 LLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPD-RLRPGIDEFLDKMFLTDACLLF 226
L+ ++ HL VH+PYR L ++ L D L + ++ ++TD LL
Sbjct: 140 FYLISEMSSHLIVHSPYR----TLTSLQGELGLAQEDVNLAWSV---INDHYMTDLPLLH 192
Query: 227 SPSQIALAAVL 237
P IAL A+L
Sbjct: 193 PPHVIALTAIL 203
>sp|Q7QB13|CCNC_ANOGA Cyclin-C OS=Anopheles gambiae GN=CycC PE=3 SV=2
Length = 266
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 19/165 (11%)
Query: 102 VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFN-LSISQFVSN----IKGDQ 156
VI TA Y KRFY NS+ P + TC+ L+ KVEEF +S S+ ++ IK
Sbjct: 61 VIATATVYFKRFYARNSLKCIDPLLLAPTCILLSSKVEEFGVISNSRLITTCQTVIKNKF 120
Query: 157 QKA--------SDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRP 208
A ++ IL E L++ L L V+ PYRP+ + DI QL
Sbjct: 121 SYAYQQEFPYRTNHILECEFYLLENLDCCLIVYQPYRPLLQLMQDIGQEEQLLTLTW--- 177
Query: 209 GIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQ 253
++ TD LL+ P QIA+ + + LQ+ L ++ +
Sbjct: 178 ---RLINDSLRTDVSLLYPPYQIAIGCLQIACVILQKELKSWFAE 219
>sp|Q9FJK7|CCC12_ARATH Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1
Length = 253
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 102 VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIK---GDQQK 158
V+ TA Y++R Y S+ +Y P+ + TC+YLACK EE + V +K D++
Sbjct: 61 VVATAVTYMRRVYTRKSLTEYEPRLVAPTCLYLACKAEESVVHAKLLVFYMKKLYADEKF 120
Query: 159 ASDI--ILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPD--RLRPGIDEFL 214
+I IL E+ +++ L ++L V +PYR + FL D S + D L G+ +
Sbjct: 121 RYEIKDILEMEMKVLEALNFYLVVFHPYRSLPEFLQD----SGINDTSMTHLTWGL---V 173
Query: 215 DKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAY 250
+ + D L+ P I LA + ++ ++++ +
Sbjct: 174 NDTYRMDLILIHPPFLITLACIYIASVHKEKDIKTW 209
>sp|Q6CP20|SSN8_KLULA RNA polymerase II holoenzyme cyclin-like subunit OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SSN8 PE=3 SV=1
Length = 304
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 25/174 (14%)
Query: 100 KVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSN-------- 151
+ + TA YL RF L SV + + ++ TC+YLACKVEE I V+
Sbjct: 91 QCALVTAHVYLSRFLLRASVREVNLYLLITTCIYLACKVEECPQHIRTLVNEARSLWPEF 150
Query: 152 IKGDQQKASDIILNNELLLMQQLKYHLTVHNPYRP---VEGFLIDIKTRSQLRDPDRLRP 208
I D K ++ E L+++L+ +L VH+PYR +E L K +L D D L+
Sbjct: 151 IPPDVTKVTEF----EFYLIEELQSYLIVHHPYRSLEQIEKALSSEKYNYKLSD-DELQ- 204
Query: 209 GIDEFLDKMFLTDACLLFSPSQIALAAVLQSA--------SKLQENLDAYVTQT 254
I ++ + TD LL+SP IA++ + + S + N++ ++ +T
Sbjct: 205 KIWSLINDSYTTDVHLLYSPHVIAISCLFAVSCIIHKPEDSTKRANINMFIAET 258
>sp|Q5BBA8|SSN8_EMENI RNA polymerase II holoenzyme cyclin-like subunit OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=ssn8 PE=3 SV=2
Length = 302
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 21/183 (11%)
Query: 63 DEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDY 122
D+ + HF ++R+L ++ QL KR S + + TA Y+KR+Y N + +
Sbjct: 32 DKASHTHF-PLPDQRLLNIYFNQQLIKLGKRMS--TRQQALATAQVYIKRYYTKNEIRNT 88
Query: 123 HPKEILVTCVYLACKVEEFNLSISQFVSNIKG--------DQQKASDIILNNELLLMQQL 174
+P +L T YLACK+EE I VS + D K + E L+ ++
Sbjct: 89 NPYLVLTTAFYLACKMEECPQHIRFVVSEARALWPEFIVPDVSKVGEC----EFSLISEM 144
Query: 175 KYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALA 234
+ L VH+PYR + ++ S D L + ++ +LTD LL+ P IA+
Sbjct: 145 QAQLIVHHPYRTLSELQPELSLTS---DEVALAWSV---INDHYLTDLSLLYPPHIIAVM 198
Query: 235 AVL 237
A++
Sbjct: 199 AII 201
>sp|Q75AX7|SSN8_ASHGO RNA polymerase II holoenzyme cyclin-like subunit OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SSN8 PE=3 SV=2
Length = 332
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 23/178 (12%)
Query: 100 KVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKG----- 154
+ + TA YL RF L S+ + + ++ TC+YLACKVEE I V+ +
Sbjct: 92 QYALATAHVYLARFCLKASIREVNLYLLVTTCIYLACKVEECPQHIRTLVNEARSLWPEF 151
Query: 155 ---DQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIK--TRSQLRDPDRLRPG 209
D K ++ E L+++L+ ++ VH PYR +E ++ + + PD L+
Sbjct: 152 VPPDPTKVTEF----EFYLIEELQSYMIVHYPYRAMEQIAAALRRPPYNLVLSPDDLQNS 207
Query: 210 IDEFLDKMFLTDACLLFSPSQIALAAVL--------QSASKLQENLDAYVTQTLLGQH 259
++ ++TD LL+ P IA+A + A LQE + ++ + + H
Sbjct: 208 W-SLINDSYITDVHLLYPPHVIAMACLFITVCLRSAAGARDLQETFNRFMADSQVDLH 264
>sp|A1C7R6|SSN8_ASPCL RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=ssn8 PE=3 SV=2
Length = 302
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 25/189 (13%)
Query: 53 FILEHRAELTDEEASEHFLSASE-----ERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAF 107
F E AE+ + H L+ S+ +R+L ++ QL KR S + + TA
Sbjct: 16 FTRERLAEIREAFRERHKLAHSQFPLPDQRLLNIYFSQQLIKLGKRMS--TRQQALATAQ 73
Query: 108 HYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSN--------IKGDQQKA 159
Y+KRFY N + +P +L T YLACK+EE I V I D K
Sbjct: 74 VYIKRFYTKNEIRHTNPYLVLTTAFYLACKMEECPQHIRFVVGEARSLWPEFITPDVSKL 133
Query: 160 SDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFL 219
+ E L+ ++ L VH+PYR + G ++ S D L + ++ +L
Sbjct: 134 GEC----EFSLISEMNSQLIVHHPYRTLSGLQSELSLTS---DEVALAWSV---INDHYL 183
Query: 220 TDACLLFSP 228
TD LL+SP
Sbjct: 184 TDLPLLYSP 192
>sp|Q9C1M4|SSN8_GIBMO RNA polymerase II holoenzyme cyclin-like subunit OS=Gibberella
moniliformis GN=SSN8 PE=1 SV=1
Length = 319
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 18/170 (10%)
Query: 75 EERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYL 134
++R L ++ QL KR + + + + TA Y+KRFY + +P ++ T +YL
Sbjct: 43 QQRRLYIYFNQQLIRLAKRLT--IRQQSMATAQVYMKRFYSKVEIRRTNPYLVIATAIYL 100
Query: 135 ACKVEEFNLSISQFVSNIKGDQQKASDIILNN-------ELLLMQQLKYHLTVHNPYRPV 187
ACK+EE I V+ + Q D++ + E ++ +++ L V PYR +
Sbjct: 101 ACKIEESPQHIRLIVTEAR---QMWGDLVAIDTSKLGECEFFMISEMRSQLIVFQPYRTI 157
Query: 188 EGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVL 237
R++L D ++ F+TD LL+ P IA+ A+L
Sbjct: 158 TAL------RNELSLVDDEVQLARSVINDHFMTDLPLLYPPHIIAMVAIL 201
>sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2
Length = 579
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 32/186 (17%)
Query: 76 ERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLA 135
E L + Y L+D R +P+V I TA + RF+ S + I C++LA
Sbjct: 56 ETYLRKSYCTFLQDLGMRLK--VPQVTIATAIIFCHRFFFRQSHAKNDRRTIATVCMFLA 113
Query: 136 CKVEEFNLSISQ--FVS----NIK--GDQQK---------ASDIILNNELLLMQQLKYHL 178
KVEE + FVS N K G QK ++ILN E +++ L + L
Sbjct: 114 GKVEETPRPLKDVIFVSYEIINKKDPGASQKIKQKEVYEQQKELILNGEKIVLSTLGFDL 173
Query: 179 TVHNPYRP----VEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALA 234
V++PY+P ++ F + +Q+ F++ T CL F P IA
Sbjct: 174 NVYHPYKPLVEAIKKFKVAQNALAQV---------AWNFVNDGLRTSLCLQFKPHHIAAG 224
Query: 235 AVLQSA 240
A+ +A
Sbjct: 225 AIFLAA 230
>sp|Q4WZT9|SSN8_ASPFU RNA polymerase II holoenzyme cyclin-like subunit OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=ssn8 PE=3 SV=1
Length = 302
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 75 EERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYL 134
++R+L ++ QL KR S + + TA Y+KRFY N + +P +L T YL
Sbjct: 43 DQRLLNIYFSQQLIKLGKRMS--TRQQALATAQVYIKRFYTKNEIRHTNPYLVLTTAFYL 100
Query: 135 ACKVEEFNLSISQFVSN--------IKGDQQKASDIILNNELLLMQQLKYHLTVHNPYRP 186
ACK+EE I V I D K + E L+ ++ L VH+PYR
Sbjct: 101 ACKMEECPQHIRFVVGEARSLWPEFITPDVSKLGEC----EFSLISEMNSQLIVHHPYRT 156
Query: 187 VEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVL 237
+ ++ S D L + ++ +LTD LL++P IA+ A++
Sbjct: 157 LSELQPELSLTS---DEVALAWSV---INDHYLTDLPLLYAPHVIAVMAII 201
>sp|Q2UDB2|SSN8_ASPOR RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=ssn8 PE=3 SV=2
Length = 301
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 12/167 (7%)
Query: 75 EERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYL 134
++R+L ++ QL KR S + + TA Y+KRFY N + +P ++ T YL
Sbjct: 43 DQRLLNIYFSQQLIKLGKRMS--TRQQALATAQVYIKRFYTKNEIRHTNPYLVVTTAFYL 100
Query: 135 ACKVEEFNLSISQFVSNIKGDQQK--ASDI--ILNNELLLMQQLKYHLTVHNPYRPVEGF 190
ACK+EE I V+ + + A D+ + E L+ ++ L VH+PYR +
Sbjct: 101 ACKMEECPQHIRFVVAEARNFWPEFIAPDVSKLGECEFALISEMNSQLIVHHPYRTLSEL 160
Query: 191 LIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVL 237
++ S D L + ++ +LTD LL+ P IA+ A++
Sbjct: 161 QPELSLTS---DEVALAWSV---INDHYLTDLPLLYPPHVIAVMAII 201
>sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1
Length = 543
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 36/193 (18%)
Query: 75 EERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYL 134
+E L + Y L+D R +P+V I TA + RFYL S + I C++L
Sbjct: 58 KESYLRKSYCTFLQDLGMRLK--VPQVTIATAIVFCHRFYLRQSHAKNDRRTIATVCMFL 115
Query: 135 ACKVEEFNLSISQFV---------------SNIKG----DQQKASDIILNNELLLMQQLK 175
A KVEE + + IK DQQK ++IL E +++ L
Sbjct: 116 AGKVEETPRPLKDVILVSYEIIHKKDPAAGQRIKQKEVYDQQK--ELILLAERVVLATLG 173
Query: 176 YHLTVHNPYRP----VEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQI 231
+ L VH+PY+P + F + +Q+ F++ T CL F P I
Sbjct: 174 FDLNVHHPYKPLVEAIRKFKVAQNALAQV---------AWNFVNDGLRTSLCLQFKPHHI 224
Query: 232 ALAAVLQSASKLQ 244
A A+ +A L+
Sbjct: 225 AAGAIFLAAKFLK 237
>sp|Q0CV29|SSN8_ASPTN RNA polymerase II holoenzyme cyclin-like subunit OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=ssn8 PE=3 SV=1
Length = 301
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 12/167 (7%)
Query: 75 EERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYL 134
++R+L ++ QL KR + + + TA Y+KRFY N + +P ++ T YL
Sbjct: 43 DQRLLNIYFSQQLIKLGKRTT--TRQQALATAQVYIKRFYTKNDIRHTNPYLVITTAFYL 100
Query: 135 ACKVEEFNLSISQFVSNIKGDQQK--ASDI--ILNNELLLMQQLKYHLTVHNPYRPVEGF 190
ACK+EE I V+ + + A D+ + E L+ ++ L VH+PYR +
Sbjct: 101 ACKMEECPQHIRFVVAEARSFWPEFIAPDVSKLGECEFALISEMNSQLIVHHPYRTLSEL 160
Query: 191 LIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVL 237
+++ S D L + ++ +LTD LL+ P IA+ A++
Sbjct: 161 TPELQLTS---DEVALAWSV---INDHYLTDLPLLYPPHVIAVMAII 201
>sp|Q6Z7H3|CCT12_ORYSJ Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2
Length = 630
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 108/250 (43%), Gaps = 44/250 (17%)
Query: 87 LRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSIS 146
+RD R +P++ I TA + RFYL S+ + I C++LA KVE+ +
Sbjct: 52 IRDVGIRLK--LPQMTIATAIMFCHRFYLYQSLAKNGWQTIATVCIFLASKVEDTPCPLD 109
Query: 147 QFVSNIKG-------------------DQQKASDIILNNELLLMQQLKYHLTVHNPYRPV 187
Q + G ++QKA +IL E L++ +++ + +PYRP
Sbjct: 110 QVIRVAYGTMYRRDPATARRIHQKDVFEKQKA--LILTGERLVLTTVRFDFNIQHPYRP- 166
Query: 188 EGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQENL 247
L+D + + + + + F++ T CL + P IA A L A+K Q
Sbjct: 167 ---LLDAMEKLGISQKEVKQVAWN-FVNDWLKTTLCLQYKPQYIA-AGSLYLAAKFQN-- 219
Query: 248 DAYVTQTLLGQHANVRLVDL----IEAV-RKIRTLV---SKPIESPSREMFKQLEKRLEK 299
V + G H D+ +EAV +++R +V +K PS KQ E E
Sbjct: 220 ---VKLPVHGGHVWWHQFDVAPKPLEAVLQQMREMVHMKAKLFAHPSPA--KQKEVLFEG 274
Query: 300 CRNQANNPDS 309
+N+PDS
Sbjct: 275 MLLISNSPDS 284
>sp|P47821|SSN8_YEAST RNA polymerase II holoenzyme cyclin-like subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSN8 PE=1
SV=1
Length = 323
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 23/153 (15%)
Query: 103 IGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSN--------IKG 154
+ TA YL RF + SV + + ++ TCVYLACKVEE I VS I
Sbjct: 96 LATAHIYLSRFLIKASVREINLYMLVTTCVYLACKVEECPQYIRTLVSEARTLWPEFIPP 155
Query: 155 DQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDE-- 212
D K ++ E L+++L+ +L VH+PY+ ++ + +K + P ++ D+
Sbjct: 156 DPTKVTEF----EFYLLEELESYLIVHHPYQSLKQIVQVLK-----QPPFQITLSSDDLQ 206
Query: 213 ----FLDKMFLTDACLLFSPSQIALAAVLQSAS 241
++ ++ D LL+ P IA+A + + S
Sbjct: 207 NCWSLINDSYINDVHLLYPPHIIAVACLFITIS 239
>sp|Q9C8P7|CCT11_ARATH Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1
Length = 247
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 13/148 (8%)
Query: 99 PKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQ--FVS-NIKGD 155
P+ I TA +RF+ S+ PK + + C+++A KVE FVS + +
Sbjct: 51 PQKTIATAIVLCQRFFTRQSLTKNDPKTVAIICMFIAGKVEGSPRPAGDVVFVSYRVLFN 110
Query: 156 QQKASDI-------ILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRP 208
++ D+ +L E L++ L+ L + +PY+ V + +K + D RL
Sbjct: 111 KEPLRDVFERLKMTVLTGEKLVLSTLECDLEIEHPYKLVMDW---VKRSVKTEDGRRLCQ 167
Query: 209 GIDEFLDKMFLTDACLLFSPSQIALAAV 236
F++ T CL F PSQIA AA+
Sbjct: 168 AAFNFVNDSLRTSLCLQFGPSQIASAAI 195
>sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2
Length = 490
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 36/196 (18%)
Query: 75 EERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYL 134
+E L + Y L+D R +P+V I TA + RF+L S + I C++L
Sbjct: 59 KESYLRKSYCTFLQDLGMRLK--VPQVTIATAIVFCHRFFLRQSHAKNDRRTIATVCMFL 116
Query: 135 ACKVEEFNLSISQF---------------VSNIKG----DQQKASDIILNNELLLMQQLK 175
A KVEE + V IK +QQK ++IL E +++ L
Sbjct: 117 AGKVEETPRPLKDVILISYEIIHKKDAAAVQRIKQKEVYEQQK--ELILLGERVVLVTLG 174
Query: 176 YHLTVHNPYRP----VEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQI 231
+ L VH+PY+P ++ F + +Q+ F++ T CL F P I
Sbjct: 175 FDLNVHHPYKPLVEAIKKFKVAQNALAQV---------AWNFVNDGLRTSLCLQFKPHHI 225
Query: 232 ALAAVLQSASKLQENL 247
A A+ +A L+ L
Sbjct: 226 AAGAIFLAAKFLKVKL 241
>sp|Q8GYM6|CCT14_ARATH Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1
Length = 541
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 36/196 (18%)
Query: 75 EERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYL 134
+E L + Y L+D R +P+V I TA + RF++ S + I C++L
Sbjct: 55 KETYLRKSYCTFLQDLGMRLK--VPQVTIATAIIFCHRFFIRQSHARNDRRTIATVCMFL 112
Query: 135 ACKVEEFNLSISQFV---------------SNIKG----DQQKASDIILNNELLLMQQLK 175
A KVEE + + IK +QQK ++ILN E +++ L
Sbjct: 113 AGKVEETPRPLKDVIVVSYEIIHKKDPTTAQKIKQKEVYEQQK--ELILNGEKIVLSTLG 170
Query: 176 YHLTVHNPYRP----VEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQI 231
+ V++PY+P ++ F + +Q+ F++ T CL F P I
Sbjct: 171 FDFNVYHPYKPLVEAIKKFKVAQNALAQV---------AWNFVNDGLRTSLCLQFKPHHI 221
Query: 232 ALAAVLQSASKLQENL 247
A A+ +A L+ L
Sbjct: 222 AAGAIFLAAKFLKVKL 237
>sp|Q6NRK9|FA58A_XENLA Cyclin-related protein FAM58A OS=Xenopus laevis GN=fam58a PE=2 SV=2
Length = 244
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 15/154 (9%)
Query: 98 MPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVS-----NI 152
M V I TA +FY S+ +Y P + ++ +YLA KVEE +L ++ N
Sbjct: 39 MHSVPIATACTIYHKFYKETSLENYDPHLVAMSAIYLAGKVEEQHLRTRDIINVCHRYNN 98
Query: 153 KGDQ--------QKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPD 204
G + + D I++ ELL+++ L + ++ +P++ + +LI +K +
Sbjct: 99 PGSEPLEVDSKFWELRDNIVHCELLMLRMLNFRVSFQHPHKYLLHYLISLKNWMNRHSWE 158
Query: 205 R--LRPGIDEFLDKMFLTDACLLFSPSQIALAAV 236
R + L + D CL + P QIA+A +
Sbjct: 159 RTPIATAAWALLRDSYHGDLCLRYEPQQIAVAVL 192
>sp|Q1EAW8|SSN8_COCIM RNA polymerase II holoenzyme cyclin-like subunit OS=Coccidioides
immitis (strain RS) GN=SSN8 PE=3 SV=2
Length = 303
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 32/166 (19%)
Query: 86 QLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSI 145
QL KR + + + + TA Y+KRFY + +P +L T YLACK+EE I
Sbjct: 54 QLIKLAKRLN--VRQQALATAQVYVKRFYTKVEIRRTNPYLVLTTAFYLACKIEECPQHI 111
Query: 146 SQFVSNIKG--------DQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTR 197
+ +G D K + E L+ ++ L VH+PYR T
Sbjct: 112 RLVLGEARGLWPEFIAPDSAKIGEC----EFWLISEMNSQLIVHHPYR----------TL 157
Query: 198 SQLRDPDRLRPGIDEF------LDKMFLTDACLLFSPSQIALAAVL 237
S+L+ L DE ++ +LTD LL P I++ A+
Sbjct: 158 SELQSYLSLTS--DEIALAWSVINDHYLTDLLLLHPPHVISVMAIF 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,439,364
Number of Sequences: 539616
Number of extensions: 4784324
Number of successful extensions: 14840
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 14597
Number of HSP's gapped (non-prelim): 194
length of query: 352
length of database: 191,569,459
effective HSP length: 118
effective length of query: 234
effective length of database: 127,894,771
effective search space: 29927376414
effective search space used: 29927376414
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)