Query psy7372
Match_columns 352
No_of_seqs 280 out of 1280
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 16:35:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jkw_A Cyclin H; cell cycle, c 100.0 9.4E-66 3.2E-70 499.1 31.7 306 26-335 1-312 (323)
2 3rgf_B Cyclin-C; protein kinas 100.0 2.5E-44 8.4E-49 343.0 22.2 252 24-309 4-271 (285)
3 1zp2_A RNA polymerase II holoe 100.0 1.1E-39 3.7E-44 302.3 17.8 211 27-278 1-218 (235)
4 2ivx_A Cyclin-T2; transcriptio 100.0 1.2E-38 4.1E-43 298.7 24.1 215 32-278 3-238 (257)
5 2i53_A Cyclin K; cell cycle, t 100.0 1.1E-37 3.9E-42 291.8 20.9 223 31-278 12-249 (258)
6 2pk2_A Cyclin-T1, protein TAT; 100.0 4E-37 1.4E-41 302.0 16.3 216 31-278 9-245 (358)
7 1g3n_C V-cyclin; cyclin-depend 100.0 3.2E-29 1.1E-33 234.9 19.8 199 76-283 47-250 (257)
8 1c9b_A General transcription f 100.0 1.8E-28 6.1E-33 222.5 21.9 155 80-246 5-159 (207)
9 3g33_B CCND3 protein; Ser/Thr 100.0 4.9E-29 1.7E-33 239.7 19.2 199 72-278 63-265 (306)
10 2b9r_A Human cyclin B1; cell c 100.0 1.9E-29 6.6E-34 238.1 14.3 205 77-297 35-240 (269)
11 2cch_B Cyclin A2, cyclin-A; co 100.0 8.2E-29 2.8E-33 232.6 14.7 190 76-278 35-226 (260)
12 2f2c_A Cyclin homolog, V-cycli 100.0 6.9E-28 2.4E-32 225.5 19.3 201 74-283 46-250 (254)
13 2w96_A G1/S-specific cyclin-D1 100.0 5.6E-28 1.9E-32 228.2 16.9 195 77-278 54-255 (271)
14 1f5q_B Gamma herpesvirus cycli 99.9 7.8E-26 2.7E-30 211.9 16.9 203 72-283 41-244 (252)
15 1w98_B Cyclin E, G1/S-specific 99.9 9.5E-25 3.2E-29 207.6 19.8 187 77-278 47-240 (283)
16 1ais_B TFB TFIIB, protein (tra 99.9 4.8E-23 1.6E-27 185.6 22.1 186 76-278 6-193 (200)
17 3k7a_M Transcription initiatio 99.8 9.8E-21 3.3E-25 184.7 9.2 153 82-246 128-292 (345)
18 4bbr_M Transcription initiatio 99.6 2.9E-15 9.9E-20 146.1 10.1 153 82-246 128-292 (345)
19 1ais_B TFB TFIIB, protein (tra 97.8 6.4E-05 2.2E-09 66.7 9.6 88 85-178 110-197 (200)
20 1c9b_A General transcription f 97.4 0.00043 1.5E-08 61.7 9.0 85 85-175 104-188 (207)
21 2pmi_B PHO85 cyclin PHO80, ami 97.2 0.0021 7.1E-08 60.8 10.7 91 86-182 80-174 (293)
22 3k7a_M Transcription initiatio 94.8 0.005 1.7E-07 59.5 0.0 67 85-153 237-303 (345)
23 4bbr_M Transcription initiatio 94.0 0.0095 3.3E-07 57.6 0.0 68 84-153 236-303 (345)
24 1zp2_A RNA polymerase II holoe 93.5 0.12 4.2E-06 46.6 6.4 54 86-141 137-190 (235)
25 3rgf_B Cyclin-C; protein kinas 92.1 0.34 1.2E-05 45.1 7.6 55 85-141 159-213 (285)
26 2i53_A Cyclin K; cell cycle, t 91.5 0.27 9.1E-06 44.7 6.0 55 86-142 154-212 (258)
27 2ivx_A Cyclin-T2; transcriptio 89.8 0.56 1.9E-05 42.6 6.5 55 86-142 149-204 (257)
28 2b9r_A Human cyclin B1; cell c 87.3 1.2 4.2E-05 40.9 7.1 55 86-142 141-195 (269)
29 2pk2_A Cyclin-T1, protein TAT; 85.4 0.79 2.7E-05 44.2 4.9 85 85-173 155-244 (358)
30 2cch_B Cyclin A2, cyclin-A; co 84.3 2 6.7E-05 39.1 6.8 61 86-148 142-204 (260)
31 3m03_A ORC6, origin recognitio 83.7 6.8 0.00023 30.6 8.7 80 87-169 6-90 (95)
32 2f2c_A Cyclin homolog, V-cycli 82.0 5.1 0.00017 36.2 8.6 52 86-139 155-210 (254)
33 1jkw_A Cyclin H; cell cycle, c 81.2 1.6 5.6E-05 41.2 5.1 43 98-140 183-225 (323)
34 1g3n_C V-cyclin; cyclin-depend 78.6 7.8 0.00027 35.0 8.6 53 86-140 154-210 (257)
35 2qdj_A Retinoblastoma-associat 76.3 5.3 0.00018 37.7 6.9 65 86-152 5-73 (304)
36 2r7g_A PP110, retinoblastoma-a 75.1 8.3 0.00028 37.0 8.0 79 72-152 204-288 (347)
37 4ell_A Retinoblastoma-associat 74.0 11 0.00038 37.0 8.7 68 83-153 282-353 (411)
38 3g33_B CCND3 protein; Ser/Thr 72.7 8.3 0.00028 36.0 7.3 53 86-140 174-230 (306)
39 2w96_A G1/S-specific cyclin-D1 70.0 4.6 0.00016 36.8 4.8 52 86-139 160-215 (271)
40 4elj_A Retinoblastoma-associat 62.9 22 0.00076 36.9 8.6 74 77-152 518-597 (656)
41 3h4c_A Transcription factor TF 60.0 30 0.001 30.9 7.7 63 85-149 17-82 (260)
42 1w98_B Cyclin E, G1/S-specific 48.9 93 0.0032 28.3 9.7 89 187-278 53-142 (283)
43 1wi3_A DNA-binding protein SAT 43.8 62 0.0021 23.7 6.0 28 86-118 37-66 (71)
44 4elj_A Retinoblastoma-associat 36.5 69 0.0024 33.2 7.2 65 86-152 7-75 (656)
45 1f5q_B Gamma herpesvirus cycli 22.1 3.4E+02 0.012 24.1 8.5 58 186-245 51-108 (252)
46 1j1v_A Chromosomal replication 22.0 1.1E+02 0.0038 23.2 4.5 57 235-298 37-93 (94)
No 1
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=9.4e-66 Score=499.08 Aligned_cols=306 Identities=42% Similarity=0.702 Sum_probs=254.1
Q ss_pred chhhc--ccCcccCCHHHHHHHHHHHhHHHHHHHhhhcCccccccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Q psy7372 26 FFSEG--QSYGQCSVEAELIALREAANQNFILEHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPMPKVVI 103 (352)
Q Consensus 26 ~y~~S--~r~W~Ft~e~~L~~~R~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~l~~~y~~~I~~i~~~l~~~Lp~~V~ 103 (352)
|||+| +|+|+|+++++|+++|.++|+++++++.+++.+.++..++||+++|+.+|.+|+.+|+++|.+|+|+||+.|+
T Consensus 1 ~y~~Stq~~~W~f~~~~~L~~~r~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~lr~~~~~~I~ev~~~l~~~Lp~~t~ 80 (323)
T 1jkw_A 1 MYHNSSQKRHWTFSSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVV 80 (323)
T ss_dssp ----------CCCSCHHHHHHHHHHHHHHHHHHHHHTSSSCTTCTTSCCHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHH
T ss_pred CCCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 79999 9999999878999999999999999987666667789999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccCCCCHHHHHhhhccc---hhhhHHHHHHHHHHHHHHcCccccc
Q psy7372 104 GTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGD---QQKASDIILNNELLLMQQLKYHLTV 180 (352)
Q Consensus 104 aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~~~~i~~~v~~l~~d---~~~~~e~Il~~E~~lL~~L~F~L~v 180 (352)
+||++||||||+++|++++++++|++||||||||+||+++++++|+.+++++ ++.++++|+.+|+.||++|+|+|.+
T Consensus 81 ~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v 160 (323)
T 1jkw_A 81 GTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIV 160 (323)
T ss_dssp HHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccChhhhHHHHHHHHHHHHHHHHHCCCcEEc
Confidence 9999999999999999999999999999999999999999999999888655 2456899999999999999999999
Q ss_pred cCChHHHHHHHHHhhcc-cCCCCchhHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHhcccchhhHHHHHhcCCC
Q psy7372 181 HNPYRPVEGFLIDIKTR-SQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQH 259 (352)
Q Consensus 181 ~~P~r~L~~~l~~l~~~-~~l~~~~~l~~~A~~~l~ds~~Td~~L~y~Ps~IAlAal~lA~~~~~~~~~~y~~~~~~~~~ 259 (352)
+|||++|.+|+.+++.+ +++++++.+.+.||.+++++++||+|+.|+|++||+||||+|+...|..++.|+...+..++
T Consensus 161 ~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~ 240 (323)
T 1jkw_A 161 HNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKE 240 (323)
T ss_dssp CCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCS
T ss_pred CChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc
Confidence 99999999999998654 34556678889999999999999999999999999999999999999999999998876655
Q ss_pred ccccHHHHHHHHHHHHHHHhCcCCCCCHHhHHHHHHHHHHhcCCCCCCCcHHHHHHHhhccCCcchHHHHhhhhHH
Q psy7372 260 ANVRLVDLIEAVRKIRTLVSKPIESPSREMFKQLEKRLEKCRNQANNPDSHIYKERMLESLNDDDESAARRYSQLS 335 (352)
Q Consensus 260 ~~~~l~~l~~~i~~i~~l~~~~~~~~~~~~v~~i~~KL~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (352)
+++++++|++++++|..++ +.+++|+.++++.|++||++|+||+++|++++|+ |++++|||+.++++++..+
T Consensus 241 ~~~~~~~l~~~~~~i~~l~-~~~~~~~~~~~k~i~~KL~~c~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 312 (323)
T 1jkw_A 241 NRTCLSQLLDIMKSMRNLV-KKYEPPRSEEVAVLKQKLDRCHSAELALNVITKK---RKGYEDDDYVSKKSKHEEE 312 (323)
T ss_dssp SSCCTHHHHHHHHHHHHHH-HTCCCCCHHHHHHHHHHHHHHHHSCSCC----------------------------
T ss_pred ccccHHHHHHHHHHHHHHH-HccCCCCHHHHHHHHHHHHHHhChhcCCcHHHHH---Hhhhcccchhhhhhhhhhh
Confidence 6788999999999999999 8888999999999999999999999999998887 6689999999998887554
No 2
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.5e-44 Score=343.01 Aligned_cols=252 Identities=25% Similarity=0.374 Sum_probs=214.5
Q ss_pred ccchhhc--ccCcccCCHHHHHHHHHHHhHHHHHHHhhhcCccccccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q psy7372 24 LKFFSEG--QSYGQCSVEAELIALREAANQNFILEHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPMPKV 101 (352)
Q Consensus 24 ~~~y~~S--~r~W~Ft~e~~L~~~R~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~l~~~y~~~I~~i~~~l~~~Lp~~ 101 (352)
...||+| +++|+||+ +||.+.|. .+.+++|+++|..+|.++++||+++|.+|+ ||+.
T Consensus 4 ~~~~w~Ss~~~~Wlft~-~el~~~~~------------------~~~~~l~~~~e~~~R~~~~~~I~~v~~~l~--L~~~ 62 (285)
T 3rgf_B 4 AGNFWQSSHYLQWILDK-QDLLKERQ------------------KDLKFLSEEEYWKLQIFFTNVIQALGEHLK--LRQQ 62 (285)
T ss_dssp TTCGGGSHHHHHHSCCH-HHHHHHHT------------------TGGGTSCHHHHHHHHHHHHHHHHHHHHHTT--CCHH
T ss_pred cchhhcccccCCcCcCH-HHHHHhhh------------------cccccCCHHHHHHHHHHHHHHHHHHHHHhC--CCHH
Confidence 4469999 99999996 69987653 145689999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccCCC-CHHHHHhhhc------------cchhhhHHHHHHHHH
Q psy7372 102 VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNL-SISQFVSNIK------------GDQQKASDIILNNEL 168 (352)
Q Consensus 102 V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~~~-~i~~~v~~l~------------~d~~~~~e~Il~~E~ 168 (352)
|++||++||||||.+++++.+++++|++||||||||+||+++ ++++|+.... .+....+++|+++|+
T Consensus 63 t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~~~~~~~~~~~Il~~E~ 142 (285)
T 3rgf_B 63 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEF 142 (285)
T ss_dssp HHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTCCSCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccCchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988 6888876531 122346789999999
Q ss_pred HHHHHcCccccccCChHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHhcccchh
Q psy7372 169 LLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLD 248 (352)
Q Consensus 169 ~lL~~L~F~L~v~~P~r~L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~~Td~~L~y~Ps~IAlAal~lA~~~~~~~~~ 248 (352)
.||++|+|+|.++|||++|.+|+..++. ...+.+.||.++++++.|++|+.|+|++||+||||+|+...|.+..
T Consensus 143 ~iL~~L~f~l~v~~P~~fL~~~~~~l~~------~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~~ 216 (285)
T 3rgf_B 143 YLLELMDCCLIVYHPYRPLLQYVQDMGQ------EDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDAR 216 (285)
T ss_dssp HHHHHTTTCCCCCCSHHHHHHHHHHHTC------HHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHcCCCeEeCChHHHHHHHHHHhCC------CHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCChh
Confidence 9999999999999999999999998752 4578899999999999999999999999999999999999988888
Q ss_pred hHHHHHhcCCCccccHHHHHHHHHHHHHHHhCcCC-CCCHHhHHHHHHHHHHhcCCCCCCCc
Q psy7372 249 AYVTQTLLGQHANVRLVDLIEAVRKIRTLVSKPIE-SPSREMFKQLEKRLEKCRNQANNPDS 309 (352)
Q Consensus 249 ~y~~~~~~~~~~~~~l~~l~~~i~~i~~l~~~~~~-~~~~~~v~~i~~KL~~c~~p~~~~~~ 309 (352)
.|+... +++.++|.+++..|.+++ ...+ -.+++++..+.+|+.+-..|...|.+
T Consensus 217 ~W~~~~------~~~~~~l~~~~~~il~ly-~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 271 (285)
T 3rgf_B 217 QWFAEL------SVDMEKILEIIRVILKLY-EQWKNFDERKEMATILSKMPKPKPPPNSEGE 271 (285)
T ss_dssp HHHHTS------CSCHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHSCCCCCCC-----
T ss_pred hHHHHH------CCCHHHHHHHHHHHHHHH-HhcccCchhhhHHHHHHhCCCCCCCCCCCCC
Confidence 887632 377899999999999998 3322 24678888998888776655544433
No 3
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-39 Score=302.29 Aligned_cols=211 Identities=20% Similarity=0.292 Sum_probs=183.0
Q ss_pred hhhc--ccCcccCCHHHHHHHHHHHhHHHHHHHhhhcCccccccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Q psy7372 27 FSEG--QSYGQCSVEAELIALREAANQNFILEHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIG 104 (352)
Q Consensus 27 y~~S--~r~W~Ft~e~~L~~~R~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~l~~~y~~~I~~i~~~l~~~Lp~~V~a 104 (352)
||+| +++|.||+ +||.+.| + +++++ |.+++++|.++|.+|+ ||+.|++
T Consensus 1 ~~~Ss~~~~w~ft~-~~l~~~~-------------------~-----~~~~~---R~~~~~~i~~v~~~l~--L~~~t~~ 50 (235)
T 1zp2_A 1 YWASSQLTQLFLST-DLESLEP-------------------T-----CLSKD---TIYQWKVVQTFGDRLR--LRQRVLA 50 (235)
T ss_dssp -CCCGGGTGGGSCS-SCTTSSC-------------------C-----CSCHH---HHHHHHHHHHHHHHTT--CCHHHHH
T ss_pred CCccCCCCCCccCH-HHHHHCC-------------------c-----chhHH---HHHHHHHHHHHHHHcC--CCHHHHH
Confidence 7888 99999997 4784321 1 12223 9999999999999999 9999999
Q ss_pred HHHHHHHHHhccCCcCc-cChHHHHHHHHHhhhccccCCCCHHHHHhhhcc----chhhhHHHHHHHHHHHHHHcCcccc
Q psy7372 105 TAFHYLKRFYLNNSVMD-YHPKEILVTCVYLACKVEEFNLSISQFVSNIKG----DQQKASDIILNNELLLMQQLKYHLT 179 (352)
Q Consensus 105 TAi~yf~RFyl~~S~~~-~~p~~I~~tcLfLA~K~EE~~~~i~~~v~~l~~----d~~~~~e~Il~~E~~lL~~L~F~L~ 179 (352)
||++||||||.++++++ +++++|++||||||||+||+++++++|+..... .....+++|+.+|+.||++|+|++.
T Consensus 51 ~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~~~~~~~I~~~E~~iL~~L~f~l~ 130 (235)
T 1zp2_A 51 TAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLI 130 (235)
T ss_dssp HHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchhhccHHHHHHHHHHHHHHCCCcEE
Confidence 99999999999999999 999999999999999999999999999886531 1234678999999999999999999
Q ss_pred ccCChHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHhcccchhhHHHHHhcCCC
Q psy7372 180 VHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQH 259 (352)
Q Consensus 180 v~~P~r~L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~~Td~~L~y~Ps~IAlAal~lA~~~~~~~~~~y~~~~~~~~~ 259 (352)
+++||++|.+|+..++ + ...+.+.||.++++++++++++.|+|++||+||+|+|+...|..++.|..++.
T Consensus 131 ~~~P~~~l~~~~~~~~----~--~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~---- 200 (235)
T 1zp2_A 131 VHHPYTSLEQAFHDGI----I--NQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPKLLDLIK---- 200 (235)
T ss_dssp CCCTHHHHHHHHHTTS----S--CHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHHHHHHHCC----
T ss_pred ecChHHHHHHHHHHcC----C--CHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCCCCcchhh----
Confidence 9999999999997542 2 35678999999999999999999999999999999999998877776766552
Q ss_pred ccccHHHHHHHHHHHHHHH
Q psy7372 260 ANVRLVDLIEAVRKIRTLV 278 (352)
Q Consensus 260 ~~~~l~~l~~~i~~i~~l~ 278 (352)
+.+.+++.++++.|.+++
T Consensus 201 -~~~~~~i~~~~~~i~~ly 218 (235)
T 1zp2_A 201 -STDAFKVILCVQRIISIY 218 (235)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHH
Confidence 578899999999999998
No 4
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=1.2e-38 Score=298.67 Aligned_cols=215 Identities=18% Similarity=0.233 Sum_probs=186.1
Q ss_pred cCcccCCHHHHHHHHHHHhHHHHHHHhhhcCccccccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy7372 32 SYGQCSVEAELIALREAANQNFILEHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLK 111 (352)
Q Consensus 32 r~W~Ft~e~~L~~~R~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~l~~~y~~~I~~i~~~l~~~Lp~~V~aTAi~yf~ 111 (352)
++|.||+ +||.+.+ +..+++++++|..+|..+++||.++|.+|+ ||+.|++||++|||
T Consensus 3 ~~w~~t~-e~l~~~p-------------------s~~~g~~~~~e~~~R~~~~~~i~~v~~~l~--l~~~t~~~A~~~~d 60 (257)
T 2ivx_A 3 SRWFFTR-EQLENTP-------------------SRRCGVEADKELSCRQQAANLIQEMGQRLN--VSQLTINTAIVYMH 60 (257)
T ss_dssp GGGSCCH-HHHHSCH-------------------HHHTTCCHHHHHHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHH
T ss_pred CCeeecH-HHHHhCh-------------------HhhcCCCHHHHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHH
Confidence 6899996 5885432 234589999999999999999999999999 99999999999999
Q ss_pred HHhccCCcCccChHHHHHHHHHhhhccccCCCCHHHHHhhhc------------cchhh--hHHHHHHHHHHHHHHcCcc
Q psy7372 112 RFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIK------------GDQQK--ASDIILNNELLLMQQLKYH 177 (352)
Q Consensus 112 RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~~~~i~~~v~~l~------------~d~~~--~~e~Il~~E~~lL~~L~F~ 177 (352)
|||.++++.++++++|++||||||||+||.++++++|+.... .+... .+++|+.+|+.||++|+|+
T Consensus 61 Rf~~~~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~ 140 (257)
T 2ivx_A 61 RFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFE 140 (257)
T ss_dssp HHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHhhCChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccc
Confidence 999999999999999999999999999999999999987542 12222 3889999999999999999
Q ss_pred ccccCChHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh-ccccccccCHHHHHHHHHHHHHHhcccchh------hH
Q psy7372 178 LTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMF-LTDACLLFSPSQIALAAVLQSASKLQENLD------AY 250 (352)
Q Consensus 178 L~v~~P~r~L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~-~Td~~L~y~Ps~IAlAal~lA~~~~~~~~~------~y 250 (352)
|.++|||++|..|+..++. ...+.+.||.++++++ .+++++.|+|++||+||+++|+...|..++ .|
T Consensus 141 l~~~~P~~fl~~~~~~l~~------~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W 214 (257)
T 2ivx_A 141 ITIEHPHTDVVKCTQLVRA------SKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHW 214 (257)
T ss_dssp CCCCCHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCG
T ss_pred eEeeCcHHHHHHHHHHhCC------CcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchH
Confidence 9999999999999987642 3568899999999998 599999999999999999999999886654 25
Q ss_pred HHHHhcCCCccccHHHHHHHHHHHHHHH
Q psy7372 251 VTQTLLGQHANVRLVDLIEAVRKIRTLV 278 (352)
Q Consensus 251 ~~~~~~~~~~~~~l~~l~~~i~~i~~l~ 278 (352)
... + ..+.+.++|.++++.|.+++
T Consensus 215 ~~~---~-~~~~~~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 215 WEY---V-DPTVTLELLDELTHEFLQIL 238 (257)
T ss_dssp GGG---T-CSSCCHHHHHHHHHHHHHHH
T ss_pred HHH---h-CCCCCHHHHHHHHHHHHHHH
Confidence 432 2 23478899999999999998
No 5
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.1e-37 Score=291.75 Aligned_cols=223 Identities=19% Similarity=0.229 Sum_probs=188.4
Q ss_pred ccCcccCCHHHHHHHHHHHhHHHHHHHhhhcCccccccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy7372 31 QSYGQCSVEAELIALREAANQNFILEHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYL 110 (352)
Q Consensus 31 ~r~W~Ft~e~~L~~~R~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~l~~~y~~~I~~i~~~l~~~Lp~~V~aTAi~yf 110 (352)
..+|.|+. +||.+.+ +..+++++++|..+|..+++||.++|.+|+ ||+.|++||++||
T Consensus 12 ~~~w~~~~-~el~~~p-------------------s~~~~~~~~~e~~~R~~~~~~i~~v~~~l~--l~~~t~~~A~~~~ 69 (258)
T 2i53_A 12 KPCWYWDK-KDLAHTP-------------------SQLEGLDPATEARYRREGARFIFDVGTRLG--LHYDTLATGIIYF 69 (258)
T ss_dssp SSSCCCCG-GGGGGCH-------------------HHHTTCCHHHHHHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHH
T ss_pred ccCCccCH-HHHHhCc-------------------hhhcCCCHHHHHHHHHHHHHHHHHHHHHcC--CChHHHHHHHHHH
Confidence 67899996 5774332 234589999999999999999999999999 9999999999999
Q ss_pred HHHhccCCcCccChHHHHHHHHHhhhccccCCCCHHHHHhhhc---cchh------hhHHHHHHHHHHHHHHcCcccccc
Q psy7372 111 KRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIK---GDQQ------KASDIILNNELLLMQQLKYHLTVH 181 (352)
Q Consensus 111 ~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~~~~i~~~v~~l~---~d~~------~~~e~Il~~E~~lL~~L~F~L~v~ 181 (352)
||||.++++.++++++|++||||||||+||+++++++|+.... .+.. ..+++|+++|+.||++|+|++.++
T Consensus 70 dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~ 149 (258)
T 2i53_A 70 HRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVE 149 (258)
T ss_dssp HHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred HHHHHhCChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceecc
Confidence 9999999999999999999999999999999999999987532 1211 147899999999999999999999
Q ss_pred CChHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHhcccchhhHHH------HHh
Q psy7372 182 NPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVT------QTL 255 (352)
Q Consensus 182 ~P~r~L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~~Td~~L~y~Ps~IAlAal~lA~~~~~~~~~~y~~------~~~ 255 (352)
|||++|..|+..++.. .+....+.+.||.++++++.++.++.|+|++||+||+++|+...|..++.|.. ||.
T Consensus 150 ~P~~fl~~~~~~l~~~--~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~ 227 (258)
T 2i53_A 150 HPYQFLLKYAKQLKGD--KNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWE 227 (258)
T ss_dssp CHHHHHHHHHHTBCSC--HHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGG
T ss_pred ChHHHHHHHHHHhCCC--cchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHH
Confidence 9999999998766421 00012678999999999999999999999999999999999998887776632 332
Q ss_pred cCCCccccHHHHHHHHHHHHHHH
Q psy7372 256 LGQHANVRLVDLIEAVRKIRTLV 278 (352)
Q Consensus 256 ~~~~~~~~l~~l~~~i~~i~~l~ 278 (352)
.+ ..+.+.+++.++++.|.+++
T Consensus 228 ~~-~~~~~~~~l~~~~~~il~ly 249 (258)
T 2i53_A 228 QF-VQDVPVDVLEDICHQILDLY 249 (258)
T ss_dssp GT-SSSCCHHHHHHHHHHHHTTT
T ss_pred Hh-ccCCCHHHHHHHHHHHHHHH
Confidence 22 13578899999999999888
No 6
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=4e-37 Score=302.01 Aligned_cols=216 Identities=17% Similarity=0.219 Sum_probs=185.7
Q ss_pred ccCcccCCHHHHHHHHHHHhHHHHHHHhhhcCccccccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy7372 31 QSYGQCSVEAELIALREAANQNFILEHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYL 110 (352)
Q Consensus 31 ~r~W~Ft~e~~L~~~R~~~n~~~~~~~~~~~~~~~~~~~~lt~eeE~~l~~~y~~~I~~i~~~l~~~Lp~~V~aTAi~yf 110 (352)
.++|.||. +||.+.+ +..+++++++|..+|..+++||.++|.+|+ ||+.|++||++||
T Consensus 9 ~~~wlft~-eeL~~~p-------------------S~~dgi~~~~E~~~R~~~v~wI~ev~~~l~--L~~~t~~tAv~~~ 66 (358)
T 2pk2_A 9 NKRWYFTR-EQLENSP-------------------SRRFGVDPDKELSYRQQAANLLQDMGQRLN--VSQLTINTAIVYM 66 (358)
T ss_dssp CSSSSCCS-HHHHTCT-------------------THHHHCCHHHHHHHHHHHHHHHHHHHTTTT--CCHHHHHHHHHHH
T ss_pred CCCceeCH-HHHHhCh-------------------hhhcCCChHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 68999997 5885432 223379999999999999999999999999 9999999999999
Q ss_pred HHHhccCCcCccChHHHHHHHHHhhhccccCCCCHHHHHhhhc------------cchh--hhHHHHHHHHHHHHHHcCc
Q psy7372 111 KRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIK------------GDQQ--KASDIILNNELLLMQQLKY 176 (352)
Q Consensus 111 ~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~~~~i~~~v~~l~------------~d~~--~~~e~Il~~E~~lL~~L~F 176 (352)
||||.++++.++++++|++||||||||+||.++++++|+.... .+.. ..+++|+.+|+.||++|+|
T Consensus 67 dRFl~~~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f 146 (358)
T 2pk2_A 67 HRFYMIQSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGF 146 (358)
T ss_dssp HHHTTTSCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTT
T ss_pred HHHHhcCCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999987542 1222 2378899999999999999
Q ss_pred cccccCChHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh-ccccccccCHHHHHHHHHHHHHHhcccchh------h
Q psy7372 177 HLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMF-LTDACLLFSPSQIALAAVLQSASKLQENLD------A 249 (352)
Q Consensus 177 ~L~v~~P~r~L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~-~Td~~L~y~Ps~IAlAal~lA~~~~~~~~~------~ 249 (352)
+|.++|||++|..|+..+.. ...+.+.||.++++++ .+++++.|+|++||+||||+|+...+..++ .
T Consensus 147 ~L~v~~P~~fL~~~~~~l~~------~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~ 220 (358)
T 2pk2_A 147 ELTIDHPHTHVVKCTQLVRA------SKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKH 220 (358)
T ss_dssp CCCCCCTTHHHHHHHHHTTC------CHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCC
T ss_pred ceeCCCHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccc
Confidence 99999999999999987642 3568899999999998 589999999999999999999998876553 2
Q ss_pred HHHHHhcCCCccccHHHHHHHHHHHHHHH
Q psy7372 250 YVTQTLLGQHANVRLVDLIEAVRKIRTLV 278 (352)
Q Consensus 250 y~~~~~~~~~~~~~l~~l~~~i~~i~~l~ 278 (352)
|+. .+ +..++.++|.++++.|.+++
T Consensus 221 W~~---~~-~~~vt~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 221 WWE---YV-DATVTLELLDELTHEFLQIL 245 (358)
T ss_dssp TTT---TS-CSSCCHHHHHHHHHHHHHHT
T ss_pred hHH---HH-hccCCHHHHHHHHHHHHHHH
Confidence 433 22 23468899999999999988
No 7
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.96 E-value=3.2e-29 Score=234.93 Aligned_cols=199 Identities=15% Similarity=0.163 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccC-CCCHHHHHhhhcc
Q psy7372 76 ERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEF-NLSISQFVSNIKG 154 (352)
Q Consensus 76 E~~l~~~y~~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~-~~~i~~~v~~l~~ 154 (352)
...+|...++||.++|.+|+ ++++|+++|++|++||+..+++...+++++++||+|+|||+||. +.++++|+....
T Consensus 47 ~~~~R~~lvdwl~ev~~~~~--l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~- 123 (257)
T 1g3n_C 47 TSHMRKLLGTWMFSVCQEYN--LEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAA- 123 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHHHhC--CCccHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHC-
Confidence 34589999999999999999 99999999999999999999999999999999999999999997 789999987653
Q ss_pred chhhhHHHHHHHHHHHHHHcCccccccCChHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhccccccccCHHHHHHH
Q psy7372 155 DQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALA 234 (352)
Q Consensus 155 d~~~~~e~Il~~E~~lL~~L~F~L~v~~P~r~L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~~Td~~L~y~Ps~IAlA 234 (352)
...++++|+++|+.||++|+|++.+++|+.+|..|+..++.. .+....+.+.|+.+++.++.+..++.|+||+||+|
T Consensus 124 -~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~--~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaA 200 (257)
T 1g3n_C 124 -DSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGG--SQHLDFWHHEVNTLITKALVDPLTGSLPASIISAA 200 (257)
T ss_dssp -TCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCS--STTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCC--hhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHH
Confidence 235678999999999999999999999999999999877531 12233456789999999999888999999999999
Q ss_pred HHHHHHHhcccc----hhhHHHHHhcCCCccccHHHHHHHHHHHHHHHhCcCC
Q psy7372 235 AVLQSASKLQEN----LDAYVTQTLLGQHANVRLVDLIEAVRKIRTLVSKPIE 283 (352)
Q Consensus 235 al~lA~~~~~~~----~~~y~~~~~~~~~~~~~l~~l~~~i~~i~~l~~~~~~ 283 (352)
|+++|....|.. .+.|...... ..+.+.++|.++++.|.+++ +++.
T Consensus 201 ai~lA~~~l~~~~~~~~~~w~~~l~~--~t~~~~~~l~~c~~~i~~l~-~~~~ 250 (257)
T 1g3n_C 201 GCALLVPANVIPQDTHSGGVVPQLAS--ILGCDVSVLQAAVEQILTSV-SDFD 250 (257)
T ss_dssp HHHHHCCGGGSCC-----CHHHHHHH--HHTCCHHHHHHHHHHHHHHH-HHCC
T ss_pred HHHHHHHHhCCCcccchhhHHHHHHH--HHCcCHHHHHHHHHHHHHHH-HHCC
Confidence 999999877643 1346554322 13477889999999999998 5554
No 8
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.96 E-value=1.8e-28 Score=222.52 Aligned_cols=155 Identities=16% Similarity=0.246 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccCCCCHHHHHhhhccchhhh
Q psy7372 80 VRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGDQQKA 159 (352)
Q Consensus 80 ~~~y~~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~~~~i~~~v~~l~~d~~~~ 159 (352)
...+..+|.++|..|+ ||+.|++||++||||||..++++.++++.|++||||+|||+||.|+++++|+...+. .
T Consensus 5 l~~a~~~I~~~~~~L~--L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~----~ 78 (207)
T 1c9b_A 5 MMNAFKEITTMADRIN--LPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRI----S 78 (207)
T ss_dssp HHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSS----C
T ss_pred HHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCC----C
Confidence 3468899999999999 999999999999999999999999999999999999999999999999999988752 3
Q ss_pred HHHHHHHHHHHHHHcCccccccCChHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhccccccccCHHHHHHHHHHHH
Q psy7372 160 SDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQS 239 (352)
Q Consensus 160 ~e~Il~~E~~lL~~L~F~L~v~~P~r~L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~~Td~~L~y~Ps~IAlAal~lA 239 (352)
..+|..+|+.|++.|+|++.++||+.++..|...++ + ++.+.+.||.++++++.+++++.|+|+.||+||+|+|
T Consensus 79 ~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~----l--~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA 152 (207)
T 1c9b_A 79 KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLC----L--PKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMA 152 (207)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTT----C--CHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCC----C--CHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHH
Confidence 567999999999999999999999999999998764 2 4578899999999999999999999999999999999
Q ss_pred HHhcccc
Q psy7372 240 ASKLQEN 246 (352)
Q Consensus 240 ~~~~~~~ 246 (352)
+...|..
T Consensus 153 ~~~~~~~ 159 (207)
T 1c9b_A 153 SQASAEK 159 (207)
T ss_dssp HHTSSSC
T ss_pred HHHHCCC
Confidence 9988764
No 9
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.96 E-value=4.9e-29 Score=239.72 Aligned_cols=199 Identities=15% Similarity=0.158 Sum_probs=166.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccC-CCCHHHHHh
Q psy7372 72 SASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEF-NLSISQFVS 150 (352)
Q Consensus 72 t~eeE~~l~~~y~~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~-~~~i~~~v~ 150 (352)
.++-+..+|...++||.++|..|+ |++.|+++|++||+||+.++++...++++|++||+|||||+||. +.++++|+.
T Consensus 63 q~~i~~~~R~~lvdwl~ev~~~~~--l~~~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~ 140 (306)
T 3g33_B 63 QREIKPHMRKMLAYWMLEVCEEQR--CEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCI 140 (306)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTT--CCTTHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHHhC--CcHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 344455799999999999999999 99999999999999999999999999999999999999999996 668999987
Q ss_pred hhccchhhhHHHHHHHHHHHHHHcCccccccCChHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhccccccccCHHH
Q psy7372 151 NIKGDQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQ 230 (352)
Q Consensus 151 ~l~~d~~~~~e~Il~~E~~lL~~L~F~L~v~~P~r~L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~~Td~~L~y~Ps~ 230 (352)
... ...++++|++||+.||++|+|+|.+++|+.||..|+..++.. -+....+.+.|+.+++.++.++.++.|+||+
T Consensus 141 ~~~--~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~--~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~ 216 (306)
T 3g33_B 141 YTD--HAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLP--RDRQALVKKHAQTFLALCATDYTFAMYPPSM 216 (306)
T ss_dssp HTT--TSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCC--TTTHHHHHHHHHHHHHHHHHCGGGTTSCHHH
T ss_pred Hhc--cCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCC--hhHHHHHHHHHHHHHHHHHhhhhhccCCHHH
Confidence 653 235678999999999999999999999999999999766421 1223446788999999999999999999999
Q ss_pred HHHHHHHHHHHhcccch---hhHHHHHhcCCCccccHHHHHHHHHHHHHHH
Q psy7372 231 IALAAVLQSASKLQENL---DAYVTQTLLGQHANVRLVDLIEAVRKIRTLV 278 (352)
Q Consensus 231 IAlAal~lA~~~~~~~~---~~y~~~~~~~~~~~~~l~~l~~~i~~i~~l~ 278 (352)
||+||+++|....+... ..|...... ..+.+.++|.++++.|.+++
T Consensus 217 IAaAai~lA~~~l~~~~~w~~~w~~~L~~--~tg~~~~~l~~c~~~I~~l~ 265 (306)
T 3g33_B 217 IATGSIGAAVQGLGACSMSGDELTELLAG--ITGTEVDCLRACQEQIEAAL 265 (306)
T ss_dssp HHHHHHHHHHHTCC---CCHHHHHHHHHH--HHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCchhhHHHHHHH--HHCCCHHHHHHHHHHHHHHH
Confidence 99999999999876432 233332211 13577889999999999998
No 10
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.96 E-value=1.9e-29 Score=238.14 Aligned_cols=205 Identities=16% Similarity=0.119 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccC-CCCHHHHHhhhccc
Q psy7372 77 RVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEF-NLSISQFVSNIKGD 155 (352)
Q Consensus 77 ~~l~~~y~~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~-~~~i~~~v~~l~~d 155 (352)
..+|...++||.++|.+|+ ++++|+++|++||+||+..+++...+++++++||+|+|||+||. +.++++|+....
T Consensus 35 ~~~R~~lv~wl~~v~~~~~--l~~~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~-- 110 (269)
T 2b9r_A 35 GNMRAILIDWLVQVQMKFR--LLQETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTD-- 110 (269)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhc--
Confidence 4688899999999999999 99999999999999999999999999999999999999999998 678999997653
Q ss_pred hhhhHHHHHHHHHHHHHHcCccccccCChHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhccccccccCHHHHHHHH
Q psy7372 156 QQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAA 235 (352)
Q Consensus 156 ~~~~~e~Il~~E~~lL~~L~F~L~v~~P~r~L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~~Td~~L~y~Ps~IAlAa 235 (352)
...++++|+++|+.||+.|+|++.+++|+.+|..|+..++ .+..+...|+.++++++.++.++.|+|+.||+||
T Consensus 111 ~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~------~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAa 184 (269)
T 2b9r_A 111 NTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGE------VDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGA 184 (269)
T ss_dssp SSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSC------CCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHH
Confidence 2346789999999999999999999999999999875432 2356778999999999999999999999999999
Q ss_pred HHHHHHhcccchhhHHHHHhcCCCccccHHHHHHHHHHHHHHHhCcCCCCCHHhHHHHHHHH
Q psy7372 236 VLQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVRKIRTLVSKPIESPSREMFKQLEKRL 297 (352)
Q Consensus 236 l~lA~~~~~~~~~~y~~~~~~~~~~~~~l~~l~~~i~~i~~l~~~~~~~~~~~~v~~i~~KL 297 (352)
+++|....|.. .|....... .+.+.++|.++++.|..++ .....+ ....+++.+|.
T Consensus 185 i~lA~~~l~~~--~w~~~l~~~--tg~~~~~l~~~~~~l~~~~-~~~~~~-~~~~~ai~~Ky 240 (269)
T 2b9r_A 185 FSLALKILDNG--EWTPTLQHY--LSYTEESLLPVMQHLAKNV-VMVNQG-LTKHMTVKNKY 240 (269)
T ss_dssp HHHHHHHHTCC--CSCTTHHHH--SCCCSSTTTTHHHHHHHHH-HHTTTS-CCSCCHHHHHT
T ss_pred HHHHHHHhCCC--CCCHHHHHH--HCCCHHHHHHHHHHHHHHH-HHhcCC-CcchHHHHHHh
Confidence 99999987654 454432211 2355667788888888877 332222 13456677764
No 11
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.96 E-value=8.2e-29 Score=232.56 Aligned_cols=190 Identities=15% Similarity=0.172 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccC-CCCHHHHHhhhcc
Q psy7372 76 ERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEF-NLSISQFVSNIKG 154 (352)
Q Consensus 76 E~~l~~~y~~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~-~~~i~~~v~~l~~ 154 (352)
...+|...++||.++|..|+ ++++|+++|++|++||+..+++.+.+++++++||+|+|||+||. +.++++|+....
T Consensus 35 ~~~~R~~lvdwl~~v~~~~~--l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~- 111 (260)
T 2cch_B 35 TNSMRAILVDWLVEVGEEYK--LQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITD- 111 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHc-
Confidence 34678999999999999999 99999999999999999999999999999999999999999998 889999987653
Q ss_pred chhhhHHHHHHHHHHHHHHcCccccccCChHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcccc-ccccCHHHHHH
Q psy7372 155 DQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDA-CLLFSPSQIAL 233 (352)
Q Consensus 155 d~~~~~e~Il~~E~~lL~~L~F~L~v~~P~r~L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~~Td~-~L~y~Ps~IAl 233 (352)
...++++|+++|+.||++|+|++.+++|+.+|..|+..++ .. ...+...|+.++++++.+.. ++.|+|+.||+
T Consensus 112 -~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~----~~-~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAa 185 (260)
T 2cch_B 112 -DTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQ----PA-NCKVESLAMFLGELSLIDADPYLKYLPSVIAG 185 (260)
T ss_dssp -SSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCS----SC-CHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHH
T ss_pred -CCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcC----CC-hHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHH
Confidence 2346789999999999999999999999999999987653 11 23678899999999987776 99999999999
Q ss_pred HHHHHHHHhcccchhhHHHHHhcCCCccccHHHHHHHHHHHHHHH
Q psy7372 234 AAVLQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVRKIRTLV 278 (352)
Q Consensus 234 Aal~lA~~~~~~~~~~y~~~~~~~~~~~~~l~~l~~~i~~i~~l~ 278 (352)
||+++|....|. +.|...... ..+.+.+++.++++.|..++
T Consensus 186 Aai~lA~~~~~~--~~w~~~l~~--~~g~~~~~i~~~~~~l~~~~ 226 (260)
T 2cch_B 186 AAFHLALYTVTG--QSWPESLIR--KTGYTLESLKPCLMDLHQTY 226 (260)
T ss_dssp HHHHHHHHHHHS--CCSCHHHHH--HHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CcchHHHHH--HhCcCHHHHHHHHHHHHHHH
Confidence 999999987654 455543321 13467788889988888887
No 12
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.96 E-value=6.9e-28 Score=225.51 Aligned_cols=201 Identities=12% Similarity=0.107 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccC-CCCHHHHHhhh
Q psy7372 74 SEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEF-NLSISQFVSNI 152 (352)
Q Consensus 74 eeE~~l~~~y~~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~-~~~i~~~v~~l 152 (352)
+-...+|...++||.++|.+|+ ++++|+++|++|++||+.++++...+++++++||+|+|||+||. +.++++|+...
T Consensus 46 ~i~~~~R~~lvdwl~~v~~~~~--l~~etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~ 123 (254)
T 2f2c_A 46 EVTVDNRTILLTWMHLLCESFE--LDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLS 123 (254)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTT--CCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHh
Confidence 3345689999999999999999 99999999999999999999999999999999999999999995 78999998654
Q ss_pred ccchhhhHHHHHHHHHHHHHHcCccccccCChHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhccccccccCHHHHH
Q psy7372 153 KGDQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIA 232 (352)
Q Consensus 153 ~~d~~~~~e~Il~~E~~lL~~L~F~L~v~~P~r~L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~~Td~~L~y~Ps~IA 232 (352)
. ...++++|+++|+.||++|+|++.+++|+.||..|+..++.. .+....+...|+.+++.++.+..++.|+||+||
T Consensus 124 ~--~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~--~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iA 199 (254)
T 2f2c_A 124 C--DCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIP--EDLWPQLYEAASTTICKALIQPNIALLSPGLIC 199 (254)
T ss_dssp -----CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCC--GGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHH
T ss_pred C--CCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCC--hhhHHHHHHHHHHHHHHHHcCcchhccCHHHHH
Confidence 3 335678999999999999999999999999999999876521 111233567899999999998899999999999
Q ss_pred HHHHHHHHHhcccchhhH---HHHHhcCCCccccHHHHHHHHHHHHHHHhCcCC
Q psy7372 233 LAAVLQSASKLQENLDAY---VTQTLLGQHANVRLVDLIEAVRKIRTLVSKPIE 283 (352)
Q Consensus 233 lAal~lA~~~~~~~~~~y---~~~~~~~~~~~~~l~~l~~~i~~i~~l~~~~~~ 283 (352)
+||+++|....+..--.| ...... ..+.+.++|.++.+.|.+++ ++|.
T Consensus 200 aAai~la~~~~~~~~~~w~~~~~~l~~--~tg~~~~~l~~c~~~i~~~~-~~~~ 250 (254)
T 2f2c_A 200 AGGLLTTIETDNTNCRPWTCYLEDLSS--ILNFSTNTVRTVKDQVSEAF-SLYD 250 (254)
T ss_dssp HHHHHHHHHTTCCSSCCTHHHHHHHHH--HHTCCHHHHHHHHHHHHHHH-HTCC
T ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHH--HHCcCHHHHHHHHHHHHHHH-HhCC
Confidence 999999998742221112 222211 13467788999999999888 5553
No 13
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.95 E-value=5.6e-28 Score=228.16 Aligned_cols=195 Identities=19% Similarity=0.234 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccC-CCCHHHHHhhhccc
Q psy7372 77 RVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEF-NLSISQFVSNIKGD 155 (352)
Q Consensus 77 ~~l~~~y~~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~-~~~i~~~v~~l~~d 155 (352)
..+|...++||.+++.+++ +++.|+++|++|++||+.++++.+.++++|++||+|+|||+||. |.++++|+....
T Consensus 54 ~~~R~~lv~wl~~v~~~~~--l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~-- 129 (271)
T 2w96_A 54 PSMRKIVATWMLEVCEEQK--CEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTD-- 129 (271)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CCTTHHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHC--CchhHHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhc--
Confidence 3588999999999999999 99999999999999999999999999999999999999999998 899999987653
Q ss_pred hhhhHHHHHHHHHHHHHHcCccccccCChHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhccccccccCHHHHHHHH
Q psy7372 156 QQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAA 235 (352)
Q Consensus 156 ~~~~~e~Il~~E~~lL~~L~F~L~v~~P~r~L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~~Td~~L~y~Ps~IAlAa 235 (352)
...++++|+++|+.||++|+|++.+++|+.||..|+..++.. .+....+.+.|+.+++.++.+..++.|+||+||+||
T Consensus 130 ~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~--~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAa 207 (271)
T 2w96_A 130 NSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEA--EENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGS 207 (271)
T ss_dssp TSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCC--HHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHH
Confidence 235678999999999999999999999999999999765421 001123457899999998776678999999999999
Q ss_pred HHHHHHhcccc---hhhHHHH---HhcCCCccccHHHHHHHHHHHHHHH
Q psy7372 236 VLQSASKLQEN---LDAYVTQ---TLLGQHANVRLVDLIEAVRKIRTLV 278 (352)
Q Consensus 236 l~lA~~~~~~~---~~~y~~~---~~~~~~~~~~l~~l~~~i~~i~~l~ 278 (352)
+++|....|.. .+.|... .+. ...+++.+.+.++.+.|..++
T Consensus 208 i~lA~~~l~~~~~~~~~w~~~~~~~l~-~~~~v~~~~l~~c~~~i~~l~ 255 (271)
T 2w96_A 208 VVAAVQGLNLRSPNNFLSYYRLTRFLS-RVIKCDPDCLRACQEQIEALL 255 (271)
T ss_dssp HHHHHHHHHHHSTTSCGGGTTHHHHHH-HHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCCCCcHHHHHHHHH-HHHCcCHHHHHHHHHHHHHHH
Confidence 99999876531 1223321 111 113467788889999999888
No 14
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.94 E-value=7.8e-26 Score=211.92 Aligned_cols=203 Identities=10% Similarity=0.061 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccC-CCCHHHHHh
Q psy7372 72 SASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEF-NLSISQFVS 150 (352)
Q Consensus 72 t~eeE~~l~~~y~~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~-~~~i~~~v~ 150 (352)
.++-...+|...++||.++|..|+ +.++|+++|+.|++||+..+++...+.+++++||+|||||+||. |.++++|+.
T Consensus 41 q~~i~~~~R~~lvdWl~ev~~~~~--l~~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~ 118 (252)
T 1f5q_B 41 DQHFTSQYRKVLTTWMFCVCKDLR--QDNNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAY 118 (252)
T ss_dssp HHHHHCSHHHHHHHHHHHHHHHTT--CCTTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 345566789999999999999999 99999999999999999999999999999999999999999997 678999987
Q ss_pred hhccchhhhHHHHHHHHHHHHHHcCccccccCChHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhccccccccCHHH
Q psy7372 151 NIKGDQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQ 230 (352)
Q Consensus 151 ~l~~d~~~~~e~Il~~E~~lL~~L~F~L~v~~P~r~L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~~Td~~L~y~Ps~ 230 (352)
... ...++++|++||..||++|+|++.+++|+.||..|+..+... -+....+...|+.++..++...-++.|+||.
T Consensus 119 ~~~--~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~--~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~ 194 (252)
T 1f5q_B 119 LCG--GATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAP--REDYLNIYNLCRPKIFCALCDGRSAMKRPVL 194 (252)
T ss_dssp HHC--TTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHHHHCHHHHTSCHHH
T ss_pred HhC--CCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCC--cchHHHHHHHHHHHHHHHHhchhhhccCHHH
Confidence 653 345788999999999999999999999999999998776421 0011245678999999988877899999999
Q ss_pred HHHHHHHHHHHhcccchhhHHHHHhcCCCccccHHHHHHHHHHHHHHHhCcCC
Q psy7372 231 IALAAVLQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVRKIRTLVSKPIE 283 (352)
Q Consensus 231 IAlAal~lA~~~~~~~~~~y~~~~~~~~~~~~~l~~l~~~i~~i~~l~~~~~~ 283 (352)
||+||+.++.......-+.|...... ..+.+.++|.++.+.|.+++ .++.
T Consensus 195 iAaaa~~~~l~~~~~~~~~~~~~L~~--~t~~~~~~l~~C~~~i~~~l-~~~~ 244 (252)
T 1f5q_B 195 ITLACMHLTMNQKYDYYENRIDGVCK--SLYITKEELHQCCDLVDIAI-VSFD 244 (252)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHH--HTTCCHHHHHHHHHHHHHHH-HHCC
T ss_pred HHHHHHHHHhccCCCchhhHHHHHHH--HHCcCHHHHHHHHHHHHHHH-HHhC
Confidence 99999766542211011112222211 13467788999998888888 5554
No 15
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.93 E-value=9.5e-25 Score=207.57 Aligned_cols=187 Identities=19% Similarity=0.274 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcc-CCcCccChHHHHHHHHHhhhccccC-CCCHHHHHhhhcc
Q psy7372 77 RVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLN-NSVMDYHPKEILVTCVYLACKVEEF-NLSISQFVSNIKG 154 (352)
Q Consensus 77 ~~l~~~y~~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~-~S~~~~~p~~I~~tcLfLA~K~EE~-~~~i~~~v~~l~~ 154 (352)
..+|...++||.++|.+++ ++++|+++|++|++||+.. .++...+++++++||+|+|||+||. +.++++|+....
T Consensus 47 ~~~R~~lv~wl~~v~~~~~--l~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~- 123 (283)
T 1w98_B 47 PKMRAILLDWLMEVCEVYK--LHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTD- 123 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CBHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTT-
T ss_pred HHHHHHHHHHHHHHHHHhC--CCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHc-
Confidence 3588899999999999999 9999999999999999998 6899999999999999999999998 778999987653
Q ss_pred chhhhHHHHHHHHHHHHHHcCccccccCChHHHHHHHHHhhcccC----CCC-chhHHHHHHHHHHHHhccccccccCHH
Q psy7372 155 DQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQ----LRD-PDRLRPGIDEFLDKMFLTDACLLFSPS 229 (352)
Q Consensus 155 d~~~~~e~Il~~E~~lL~~L~F~L~v~~P~r~L~~~l~~l~~~~~----l~~-~~~l~~~A~~~l~ds~~Td~~L~y~Ps 229 (352)
...++++|+++|+.||++|+|++.+++|+.||..|+..+..... +.. .......+..+++.++++..++.|+||
T Consensus 124 -~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS 202 (283)
T 1w98_B 124 -GACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYG 202 (283)
T ss_dssp -TSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHH
T ss_pred -CCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHH
Confidence 23567899999999999999999999999999999987652211 111 112234566788999888889999999
Q ss_pred HHHHHHHHHHHHhcccchhhHHHHHhcCCCccccHHHHHHHHHHHHHHH
Q psy7372 230 QIALAAVLQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVRKIRTLV 278 (352)
Q Consensus 230 ~IAlAal~lA~~~~~~~~~~y~~~~~~~~~~~~~l~~l~~~i~~i~~l~ 278 (352)
+||+||+++|.. .+. +... .+.+.++|.++++.|..++
T Consensus 203 ~iAaAai~la~~-----~~~-l~~~-----tg~~~~~i~~c~~~l~~~~ 240 (283)
T 1w98_B 203 ILAASALYHFSS-----SEL-MQKV-----SGYQWCDIENCVKWMVPFA 240 (283)
T ss_dssp HHHHHHHHHTSC-----HHH-HHHH-----SCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-----hHH-HHHH-----hCCCHHHHHHHHHHHHHHH
Confidence 999999999863 111 1212 3467788888888777765
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.91 E-value=4.8e-23 Score=185.63 Aligned_cols=186 Identities=16% Similarity=0.193 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccCCCCHHHHHhhhccc
Q psy7372 76 ERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGD 155 (352)
Q Consensus 76 E~~l~~~y~~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~~~~i~~~v~~l~~d 155 (352)
|+.+ ..+.++|.++|..|+ ||+.|+.+|..||+||+..+++...++..|++||||+|||.||.|+++++|+...+.
T Consensus 6 er~l-~~a~~~I~~~~~~L~--L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v- 81 (200)
T 1ais_B 6 ERNL-AFALSELDRITAQLK--LPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARV- 81 (200)
T ss_dssp --CH-HHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTS-
T ss_pred HHHH-HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCC-
Confidence 4444 478899999999999 999999999999999999999999999999999999999999999999999988753
Q ss_pred hhhhHHHHHHHHHHHHHHcCccccc--cCChHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhccccccccCHHHHHH
Q psy7372 156 QQKASDIILNNELLLMQQLKYHLTV--HNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIAL 233 (352)
Q Consensus 156 ~~~~~e~Il~~E~~lL~~L~F~L~v--~~P~r~L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~~Td~~L~y~Ps~IAl 233 (352)
...+|..++..|++.|+|++.+ .+|+.++..|...++ + ++.+.+.||.+++++..++++..++|+.||+
T Consensus 82 ---~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~----l--~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAa 152 (200)
T 1ais_B 82 ---DKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELG----L--SEKVRRRAIEILDEAYKRGLTSGKSPAGLVA 152 (200)
T ss_dssp ---CHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHT----C--CHHHHHHHHHHHHHHHHTTCCTTSCHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcC----C--CHHHHHHHHHHHHHHHHcCcccCCCHHHHHH
Confidence 3567999999999999999999 999999999998875 2 3568899999999999999999999999999
Q ss_pred HHHHHHHHhcccchhhHHHHHhcCCCccccHHHHHHHHHHHHHHH
Q psy7372 234 AAVLQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVRKIRTLV 278 (352)
Q Consensus 234 Aal~lA~~~~~~~~~~y~~~~~~~~~~~~~l~~l~~~i~~i~~l~ 278 (352)
||||+|+...|.. .+..+... ..++.-..+....+.+...+
T Consensus 153 Aaly~A~~~~~~~--~t~~ei~~--~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 153 AALYIASLLEGEK--RTQREVAE--VARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp HHHHHHHHHTTCC--CCHHHHHH--HHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC--CCHHHHHH--HhCCCHHHHHHHHHHHHHHc
Confidence 9999999987754 23333221 12344456666666666655
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.82 E-value=9.8e-21 Score=184.72 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccCCCCHHHHHhhhccchhhhHH
Q psy7372 82 HYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGDQQKASD 161 (352)
Q Consensus 82 ~y~~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~~~~i~~~v~~l~~d~~~~~e 161 (352)
.....|.++|..|+ ||+.|+.||..||+|||..+++...+...|++||||+|||.|+.|+++++|+..++. ...
T Consensus 128 ~a~~~I~~~~~~L~--Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~v----~~k 201 (345)
T 3k7a_M 128 AAFAKITMLCDAAE--LPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHV----KTK 201 (345)
T ss_dssp HHHHHHHHHHHHTT--CCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSSC----CSH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCC----CHH
Confidence 56689999999999 999999999999999999999999999999999999999999999999999988753 245
Q ss_pred HHHHHHHHHHHHcC------------ccccccCChHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhccccccccCHH
Q psy7372 162 IILNNELLLMQQLK------------YHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPS 229 (352)
Q Consensus 162 ~Il~~E~~lL~~L~------------F~L~v~~P~r~L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~~Td~~L~y~Ps 229 (352)
+|..++..|++.|+ |++.+.+|+.++..|...|+ + +..+.+.||.+++++..++++..++|+
T Consensus 202 eIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~----l--~~~v~~~A~~i~~~~~~~~l~~Gr~P~ 275 (345)
T 3k7a_M 202 EFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLG----L--PMQVTTSAEYTAKKCKEIKEIAGKSPI 275 (345)
T ss_dssp HHHHHHHHHHHHHTCC----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcC----C--CHHHHHHHHHHHHHHHHhchhcCCCHH
Confidence 79999999999999 99999999999999998775 2 246788999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccc
Q psy7372 230 QIALAAVLQSASKLQEN 246 (352)
Q Consensus 230 ~IAlAal~lA~~~~~~~ 246 (352)
.||+||||+|+...|..
T Consensus 276 ~IAaAaIylAa~~~~~~ 292 (345)
T 3k7a_M 276 TIAVVSIYLNILLFQIP 292 (345)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 99999999999987653
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.59 E-value=2.9e-15 Score=146.06 Aligned_cols=153 Identities=14% Similarity=0.131 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccCCCCHHHHHhhhccchhhhHH
Q psy7372 82 HYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGDQQKASD 161 (352)
Q Consensus 82 ~y~~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~~~~i~~~v~~l~~d~~~~~e 161 (352)
.....|.++|..|+ ||+.|..+|..+|++++..+.+.......|+++|||+||+.++.|+++.+|+..++.+ ..
T Consensus 128 ~a~~~I~~~~~~L~--Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v~----~k 201 (345)
T 4bbr_M 128 AAFAKITMLCDAAE--LPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVK----TK 201 (345)
T ss_dssp HHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTCC----TT
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCC----HH
Confidence 34568999999999 9999999999999999999999999999999999999999999999999999887533 34
Q ss_pred HHHHHHHHHHHHcCcc------------ccccCChHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhccccccccCHH
Q psy7372 162 IILNNELLLMQQLKYH------------LTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPS 229 (352)
Q Consensus 162 ~Il~~E~~lL~~L~F~------------L~v~~P~r~L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~~Td~~L~y~Ps 229 (352)
+|......|.+.|+.. +.+.+|..++..|...|. + +..+.+.|+.+++.+....+.....|.
T Consensus 202 eigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~----l--~~~v~~~A~~i~~~~~~~~i~~GR~P~ 275 (345)
T 4bbr_M 202 EFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLG----L--PMQVTTSAEYTAKKCKEIKEIAGKSPI 275 (345)
T ss_dssp HHHHHHHHHHHCC-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcC----C--cHHHHHHHHHHHHHHHhcccccCCChH
Confidence 6889999999999974 667899999999987764 2 346778999999999888888999999
Q ss_pred HHHHHHHHHHHHhcccc
Q psy7372 230 QIALAAVLQSASKLQEN 246 (352)
Q Consensus 230 ~IAlAal~lA~~~~~~~ 246 (352)
.||+||||+|+...|..
T Consensus 276 ~IAAAaIylAa~l~g~~ 292 (345)
T 4bbr_M 276 TIAVVSIYLNILLFQIP 292 (345)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999999887653
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.84 E-value=6.4e-05 Score=66.75 Aligned_cols=88 Identities=15% Similarity=0.196 Sum_probs=76.6
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccCCCCHHHHHhhhccchhhhHHHHH
Q psy7372 85 LQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGDQQKASDIIL 164 (352)
Q Consensus 85 ~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~~~~i~~~v~~l~~d~~~~~e~Il 164 (352)
.+|.++|..|+ +|..+..+|..++++.....-+..+.|..|++||||+||+..+.+++.+++....+. ...+|.
T Consensus 110 ~~i~r~~~~L~--l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~v----s~~ti~ 183 (200)
T 1ais_B 110 DYVNKFADELG--LSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARV----TEVTVR 183 (200)
T ss_dssp GGHHHHHHHHT--CCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTC----CHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCC----CHHHHH
Confidence 38889999999 999999999999999998877888999999999999999999999999999887652 235688
Q ss_pred HHHHHHHHHcCccc
Q psy7372 165 NNELLLMQQLKYHL 178 (352)
Q Consensus 165 ~~E~~lL~~L~F~L 178 (352)
..-..+.+.||..+
T Consensus 184 ~~~~~l~~~l~~~~ 197 (200)
T 1ais_B 184 NRYKELVEKLKIKV 197 (200)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHcCCCC
Confidence 88888888888654
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=97.45 E-value=0.00043 Score=61.72 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=70.2
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccCCCCHHHHHhhhccchhhhHHHHH
Q psy7372 85 LQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGDQQKASDIIL 164 (352)
Q Consensus 85 ~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~~~~i~~~v~~l~~d~~~~~e~Il 164 (352)
.+|.++|..++ +|..+..+|..++.+-+...-+..+.|..|++||+|+||+..+.+++.+++....+.+ ..+|.
T Consensus 104 ~~l~r~~~~l~--l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~----~~tI~ 177 (207)
T 1c9b_A 104 DFMSRFCSNLC--LPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVA----DVTIR 177 (207)
T ss_dssp HHHHHHHHHTT--CCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCC----HHHHH
T ss_pred HHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCC----HHHHH
Confidence 47788999999 9999999999999998887777899999999999999999999999999998776532 34566
Q ss_pred HHHHHHHHHcC
Q psy7372 165 NNELLLMQQLK 175 (352)
Q Consensus 165 ~~E~~lL~~L~ 175 (352)
..-..|.+.++
T Consensus 178 ~~~~~l~~~l~ 188 (207)
T 1c9b_A 178 QSYRLIYPRAP 188 (207)
T ss_dssp HHHHHHGGGHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 21
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.18 E-value=0.0021 Score=60.76 Aligned_cols=91 Identities=12% Similarity=0.091 Sum_probs=71.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC---CcCccChHHHHHHHHHhhhcc-ccCCCCHHHHHhhhccchhhhHH
Q psy7372 86 QLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNN---SVMDYHPKEILVTCVYLACKV-EEFNLSISQFVSNIKGDQQKASD 161 (352)
Q Consensus 86 ~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~---S~~~~~p~~I~~tcLfLA~K~-EE~~~~i~~~v~~l~~d~~~~~e 161 (352)
+|.++.+.-+ ++..++-.|++|++|+-..+ .+....++-+.++|+.+|+|+ ++...+-..+..+-. ...+
T Consensus 80 Yl~RI~k~t~--ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgG----isl~ 153 (293)
T 2pmi_B 80 YFIRLTKFSS--LEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGG----VRCH 153 (293)
T ss_dssp HHHHHHHTTT--CCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHT----SCHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccC----cCHH
Confidence 5666666666 89999999999999998743 345678999999999999996 555556666655421 2457
Q ss_pred HHHHHHHHHHHHcCccccccC
Q psy7372 162 IILNNELLLMQQLKYHLTVHN 182 (352)
Q Consensus 162 ~Il~~E~~lL~~L~F~L~v~~ 182 (352)
++-.+|+..|..|+|+|.|..
T Consensus 154 ELN~LE~eFL~lLdf~L~V~~ 174 (293)
T 2pmi_B 154 ELNILENDFLKRVNYRIIPRD 174 (293)
T ss_dssp HHHHHHHHHHHTTTTCCSCCT
T ss_pred HHHHHHHHHHHHcCCceeeCH
Confidence 799999999999999998764
No 22
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.005 Score=59.47 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccCCCCHHHHHhhhc
Q psy7372 85 LQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIK 153 (352)
Q Consensus 85 ~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~~~~i~~~v~~l~ 153 (352)
.+|.++|..|+ ++..|.-+|..+.++-....-...+.|..|++||||+||..-+..++.+++...+.
T Consensus 237 ~~i~Rf~~~L~--l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~ 303 (345)
T 3k7a_M 237 TYIPRFCSHLG--LPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQ 303 (345)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
Confidence 56778999999 99999999999999887766667899999999999999999888888888876654
No 23
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=94.01 E-value=0.0095 Score=57.59 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccCCCCHHHHHhhhc
Q psy7372 84 QLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIK 153 (352)
Q Consensus 84 ~~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~~~~i~~~v~~l~ 153 (352)
..+|.++|..|+ |+..|..+|..+.++.--..-....+|.-|++||||+||..-+..++.++++.+..
T Consensus 236 ~~~i~Rf~s~L~--l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~ 303 (345)
T 4bbr_M 236 LTYIPRFCSHLG--LPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQ 303 (345)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHcC--CcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHC
Confidence 357889999999 99999999999998877655556789999999999999999988899888887654
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=93.49 E-value=0.12 Score=46.59 Aligned_cols=54 Identities=13% Similarity=0.229 Sum_probs=46.9
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccC
Q psy7372 86 QLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEF 141 (352)
Q Consensus 86 ~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~ 141 (352)
+|..++..++ ++..+..+|..++..-+....+..|.|..|++||+|+|++.-+.
T Consensus 137 ~l~~~~~~~~--~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~ 190 (235)
T 1zp2_A 137 SLEQAFHDGI--INQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDEN 190 (235)
T ss_dssp HHHHHHHTTS--SCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCC
Confidence 5666667778 88999999999999988888888999999999999999997654
No 25
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=92.14 E-value=0.34 Score=45.10 Aligned_cols=55 Identities=18% Similarity=0.393 Sum_probs=46.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccC
Q psy7372 85 LQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEF 141 (352)
Q Consensus 85 ~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~ 141 (352)
.+|..++..++ .+..+...|..++..-+....+..|.|..|++||||+|++....
T Consensus 159 ~fL~~~~~~l~--~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~ 213 (285)
T 3rgf_B 159 RPLLQYVQDMG--QEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQK 213 (285)
T ss_dssp HHHHHHHHHHT--CHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCC
Confidence 36677788888 78888899999998888777777899999999999999997654
No 26
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=91.45 E-value=0.27 Score=44.75 Aligned_cols=55 Identities=20% Similarity=0.394 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCCCH----HHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccCC
Q psy7372 86 QLRDFCKRFSPPMPK----VVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFN 142 (352)
Q Consensus 86 ~I~~i~~~l~~~Lp~----~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~~ 142 (352)
+|..++..++ .+. .+...|..+...-+....+..|.|..|++||+|+|++.-+..
T Consensus 154 fl~~~~~~l~--~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~ 212 (258)
T 2i53_A 154 FLLKYAKQLK--GDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFE 212 (258)
T ss_dssp HHHHHHHTBC--SCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhC--CCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCC
Confidence 5667777777 665 577888888888888777889999999999999999976543
No 27
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=89.82 E-value=0.56 Score=42.65 Aligned_cols=55 Identities=20% Similarity=0.385 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHh-ccCCcCccChHHHHHHHHHhhhccccCC
Q psy7372 86 QLRDFCKRFSPPMPKVVIGTAFHYLKRFY-LNNSVMDYHPKEILVTCVYLACKVEEFN 142 (352)
Q Consensus 86 ~I~~i~~~l~~~Lp~~V~aTAi~yf~RFy-l~~S~~~~~p~~I~~tcLfLA~K~EE~~ 142 (352)
+|..++..++ .+..+..+|..++..-+ ...-+..|.|..|++||+|+|++.-+..
T Consensus 149 fl~~~~~~l~--~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~ 204 (257)
T 2ivx_A 149 DVVKCTQLVR--ASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWE 204 (257)
T ss_dssp HHHHHHHHTT--CCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCC
Confidence 5666777888 78888888887776654 3444678999999999999999986543
No 28
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=87.33 E-value=1.2 Score=40.85 Aligned_cols=55 Identities=18% Similarity=0.112 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccCC
Q psy7372 86 QLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFN 142 (352)
Q Consensus 86 ~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~~ 142 (352)
++..++..++ ++..+...|..+...-.....+..|.|..|++||+|+|++.-+.+
T Consensus 141 fl~~~~~~~~--~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~ 195 (269)
T 2b9r_A 141 FLRRASKIGE--VDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG 195 (269)
T ss_dssp HHHHHHHSSC--CCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC
Confidence 5666777777 788888888888887777777888999999999999999976543
No 29
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=85.37 E-value=0.79 Score=44.19 Aligned_cols=85 Identities=13% Similarity=0.254 Sum_probs=55.2
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc-cCCcCccChHHHHHHHHHhhhccccCCCCHHH----HHhhhccchhhh
Q psy7372 85 LQLRDFCKRFSPPMPKVVIGTAFHYLKRFYL-NNSVMDYHPKEILVTCVYLACKVEEFNLSISQ----FVSNIKGDQQKA 159 (352)
Q Consensus 85 ~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl-~~S~~~~~p~~I~~tcLfLA~K~EE~~~~i~~----~v~~l~~d~~~~ 159 (352)
.+|..++..++ .+..+..+|..++..-+. ..-+..|.|..||+||||+|++.-+..++... ....+. ...+
T Consensus 155 ~fL~~~~~~l~--~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~--~~vt 230 (358)
T 2pk2_A 155 THVVKCTQLVR--ASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVD--ATVT 230 (358)
T ss_dssp HHHHHHHHHTT--CCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSC--SSCC
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHh--ccCC
Confidence 36667778888 788888888887766553 33367899999999999999998664432110 111111 1124
Q ss_pred HHHHHHHHHHHHHH
Q psy7372 160 SDIILNNELLLMQQ 173 (352)
Q Consensus 160 ~e~Il~~E~~lL~~ 173 (352)
.++|.+.-..|+..
T Consensus 231 ~~~l~~i~~~il~~ 244 (358)
T 2pk2_A 231 LELLDELTHEFLQI 244 (358)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666654
No 30
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=84.26 E-value=2 Score=39.14 Aligned_cols=61 Identities=13% Similarity=0.020 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCCCCH-HHHHHHHHHHHHHhccCC-cCccChHHHHHHHHHhhhccccCCCCHHHH
Q psy7372 86 QLRDFCKRFSPPMPK-VVIGTAFHYLKRFYLNNS-VMDYHPKEILVTCVYLACKVEEFNLSISQF 148 (352)
Q Consensus 86 ~I~~i~~~l~~~Lp~-~V~aTAi~yf~RFyl~~S-~~~~~p~~I~~tcLfLA~K~EE~~~~i~~~ 148 (352)
++..++..++ ++. .+...|..+...-..... +..|.|..|++||+|+|++.-+.+.-.+.+
T Consensus 142 fl~~~~~~l~--~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l 204 (260)
T 2cch_B 142 FLTQYFLHQQ--PANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESL 204 (260)
T ss_dssp HHHHHHTTCS--SCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred HHHHHHHHcC--CChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHH
Confidence 5666677776 665 666666666555444444 678999999999999999875544333344
No 31
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=83.71 E-value=6.8 Score=30.60 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=53.0
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhccCC-----cCccChHHHHHHHHHhhhccccCCCCHHHHHhhhccchhhhHH
Q psy7372 87 LRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNS-----VMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGDQQKASD 161 (352)
Q Consensus 87 I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S-----~~~~~p~~I~~tcLfLA~K~EE~~~~i~~~v~~l~~d~~~~~e 161 (352)
|.++|..|+ ++. +...|-.++.+|=..-+ -.|+.--...++|+|.|||.--..++=..++.........+..
T Consensus 6 v~dLcVqfg--c~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~~ 82 (95)
T 3m03_A 6 IRDLAVQFS--CIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDR 82 (95)
T ss_dssp HHHHHHHHT--CGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHHH
T ss_pred HHHHHHHhC--CHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHHH
Confidence 578999999 766 77888899999863211 2355455677899999999877777766666654333333334
Q ss_pred HHHHHHHH
Q psy7372 162 IILNNELL 169 (352)
Q Consensus 162 ~Il~~E~~ 169 (352)
-..++|..
T Consensus 83 l~~~~e~~ 90 (95)
T 3m03_A 83 LCKQLEKI 90 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44455544
No 32
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=82.00 E-value=5.1 Score=36.19 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCCCHHH----HHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccc
Q psy7372 86 QLRDFCKRFSPPMPKVV----IGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVE 139 (352)
Q Consensus 86 ~I~~i~~~l~~~Lp~~V----~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~E 139 (352)
++..++..++ ++... ...|..++..-.....+..|.|..|++||+|+|.+..
T Consensus 155 fl~~~~~~~~--~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~ 210 (254)
T 2f2c_A 155 FLIPLCNALK--IPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETD 210 (254)
T ss_dssp SHHHHHHHTT--CCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhc
Confidence 4555666666 66553 2345555555555556678999999999999999985
No 33
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=81.17 E-value=1.6 Score=41.23 Aligned_cols=43 Identities=23% Similarity=0.405 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhcccc
Q psy7372 98 MPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEE 140 (352)
Q Consensus 98 Lp~~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE 140 (352)
.|..+...|..|+..-+....+..|.|..||+||+|+|++..+
T Consensus 183 ~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~ 225 (323)
T 1jkw_A 183 NPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAG 225 (323)
T ss_dssp CHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcC
Confidence 4456667788888877766666789999999999999998654
No 34
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=78.55 E-value=7.8 Score=35.01 Aligned_cols=53 Identities=4% Similarity=-0.144 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCCCHHH----HHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhcccc
Q psy7372 86 QLRDFCKRFSPPMPKVV----IGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEE 140 (352)
Q Consensus 86 ~I~~i~~~l~~~Lp~~V----~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE 140 (352)
++..++..++ ++..+ ...|..++..-.....+..|.|..|++||+|+|.+.-+
T Consensus 154 fl~~~~~~~~--~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~ 210 (257)
T 1g3n_C 154 VTSFLLLKLV--GGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANV 210 (257)
T ss_dssp HHHHHHHHHS--CSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHcC--CChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhC
Confidence 5555666666 55443 34455566555556667789999999999999999765
No 35
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=76.30 E-value=5.3 Score=37.68 Aligned_cols=65 Identities=18% Similarity=0.417 Sum_probs=46.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCc---CccChHHHHHHHHHhhhcc-ccCCCCHHHHHhhh
Q psy7372 86 QLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSV---MDYHPKEILVTCVYLACKV-EEFNLSISQFVSNI 152 (352)
Q Consensus 86 ~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~---~~~~p~~I~~tcLfLA~K~-EE~~~~i~~~v~~l 152 (352)
.-.++|+.|+ |+..|...|...|++--..-++ ..-+......+|||.||.. ++..+++.+++...
T Consensus 5 rF~~lC~~Ln--ld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~ 73 (304)
T 2qdj_A 5 DFTALCQKLK--IPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNI 73 (304)
T ss_dssp HHHHHHHHTT--CCHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHc
Confidence 3467899999 9999999999999996654122 2234667788889999984 55678888776654
No 36
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=75.10 E-value=8.3 Score=37.03 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHH---HHHHHHHHHhCCCCCH-HHHHHHHHHHHHHhcc-CC-cCccChHHHHHHHHHhhhccccCCCCH
Q psy7372 72 SASEERVLVRHYQ---LQLRDFCKRFSPPMPK-VVIGTAFHYLKRFYLN-NS-VMDYHPKEILVTCVYLACKVEEFNLSI 145 (352)
Q Consensus 72 t~eeE~~l~~~y~---~~I~~i~~~l~~~Lp~-~V~aTAi~yf~RFyl~-~S-~~~~~p~~I~~tcLfLA~K~EE~~~~i 145 (352)
+..--..+++.|. ..|.++|.+|+ ++. .+..-..+.|...... .. +.+-|...|+++|+|.-||+....++-
T Consensus 204 ~~sl~~f~rKvy~La~~Rl~~LC~~L~--~~~~~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF 281 (347)
T 2r7g_A 204 STSLSLFYKKVYRLAYLRLNTLCERLL--SEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKF 281 (347)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCH
Confidence 3334445555544 67899999997 554 3333333444443332 22 456788999999999999998878888
Q ss_pred HHHHhhh
Q psy7372 146 SQFVSNI 152 (352)
Q Consensus 146 ~~~v~~l 152 (352)
.+|+..-
T Consensus 282 ~~Ii~~Y 288 (347)
T 2r7g_A 282 KIIVTAY 288 (347)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887754
No 37
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=74.04 E-value=11 Score=36.99 Aligned_cols=68 Identities=25% Similarity=0.382 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCCCCH----HHHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccccCCCCHHHHHhhhc
Q psy7372 83 YQLQLRDFCKRFSPPMPK----VVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIK 153 (352)
Q Consensus 83 y~~~I~~i~~~l~~~Lp~----~V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE~~~~i~~~v~~l~ 153 (352)
....|..+|.+|+ +++ .-+.|.+-+.=.- -..=+.+-|...|+++|+|.-||+....++-.+|+..-+
T Consensus 282 Aa~Rl~~LC~~L~--~~~~~l~~~IWt~fe~~l~~-~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr 353 (411)
T 4ell_A 282 AYLRLNTLCERLL--SEHPELEHIIWTLFQHTLQN-EYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 353 (411)
T ss_dssp HHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHH-CGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHh-hhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 3468899999998 654 3455554443211 122245678889999999999999988888888887543
No 38
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=72.74 E-value=8.3 Score=36.02 Aligned_cols=53 Identities=21% Similarity=0.159 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCCCHH----HHHHHHHHHHHHhccCCcCccChHHHHHHHHHhhhcccc
Q psy7372 86 QLRDFCKRFSPPMPKV----VIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEE 140 (352)
Q Consensus 86 ~I~~i~~~l~~~Lp~~----V~aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~EE 140 (352)
+|..+...++ ++.. +...|..++.--.....+..|.|..||+||+|+|.+.-+
T Consensus 174 fl~~~l~~l~--~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~ 230 (306)
T 3g33_B 174 FLAFILHRLS--LPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLG 230 (306)
T ss_dssp GHHHHHHTSS--CCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcC--CChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhc
Confidence 4445555555 4432 334555555555556667789999999999999999655
No 39
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=70.04 E-value=4.6 Score=36.84 Aligned_cols=52 Identities=10% Similarity=0.060 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCCCCHHHH----HHHHHHHHHHhccCCcCccChHHHHHHHHHhhhccc
Q psy7372 86 QLRDFCKRFSPPMPKVVI----GTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVE 139 (352)
Q Consensus 86 ~I~~i~~~l~~~Lp~~V~----aTAi~yf~RFyl~~S~~~~~p~~I~~tcLfLA~K~E 139 (352)
+|..++..++ ++..+. ..|..++..-.....+..|.|..|++||+|+|+..-
T Consensus 160 fl~~~~~~l~--~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l 215 (271)
T 2w96_A 160 FIEHFLSKMP--EAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGL 215 (271)
T ss_dssp HHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHh
Confidence 5556666776 666553 234444443333334567899999999999998753
No 40
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=62.86 E-value=22 Score=36.94 Aligned_cols=74 Identities=20% Similarity=0.393 Sum_probs=50.9
Q ss_pred HHHHHHHH---HHHHHHHHHhCCCCCH-HHHHHHHHHHHHHhcc-CC-cCccChHHHHHHHHHhhhccccCCCCHHHHHh
Q psy7372 77 RVLVRHYQ---LQLRDFCKRFSPPMPK-VVIGTAFHYLKRFYLN-NS-VMDYHPKEILVTCVYLACKVEEFNLSISQFVS 150 (352)
Q Consensus 77 ~~l~~~y~---~~I~~i~~~l~~~Lp~-~V~aTAi~yf~RFyl~-~S-~~~~~p~~I~~tcLfLA~K~EE~~~~i~~~v~ 150 (352)
..+++.|. ..|+.+|.+|+ +++ .+..-.-+.|+..... .. +.+-|.-.|+++|+|.-||+....++-.+|+.
T Consensus 518 iffrKvy~LAa~Rl~~LC~~L~--~~~~~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~ 595 (656)
T 4elj_A 518 LFYKKVYRLAYLRLNTLCERLL--SEHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVT 595 (656)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHH
Confidence 34444444 78999999998 553 3333344444444432 22 45678889999999999999988888888877
Q ss_pred hh
Q psy7372 151 NI 152 (352)
Q Consensus 151 ~l 152 (352)
.-
T Consensus 596 ~Y 597 (656)
T 4elj_A 596 AY 597 (656)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 41
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=60.05 E-value=30 Score=30.88 Aligned_cols=63 Identities=13% Similarity=0.250 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCC---cCccChHHHHHHHHHhhhccccCCCCHHHHH
Q psy7372 85 LQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNS---VMDYHPKEILVTCVYLACKVEEFNLSISQFV 149 (352)
Q Consensus 85 ~~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S---~~~~~p~~I~~tcLfLA~K~EE~~~~i~~~v 149 (352)
..|..+.++-+ +|..|+.-|+-+-+.|--..- ..--+++.|+++|+.+|+---..|+++.++-
T Consensus 17 nclr~L~kKs~--~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r 82 (260)
T 3h4c_A 17 NCMRGLHKKAV--LPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVR 82 (260)
T ss_dssp HHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHhhcc--CcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 34567777777 999999999999999975322 2335789999999999987777799887763
No 42
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=48.91 E-value=93 Score=28.26 Aligned_cols=89 Identities=10% Similarity=0.064 Sum_probs=50.3
Q ss_pred HHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcc-ccccccCHHHHHHHHHHHHHHhcccchhhHHHHHhcCCCccccHH
Q psy7372 187 VEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLT-DACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQHANVRLV 265 (352)
Q Consensus 187 L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~~T-d~~L~y~Ps~IAlAal~lA~~~~~~~~~~y~~~~~~~~~~~~~l~ 265 (352)
+..++.+++...++ .....-.|..+++..+.. ...-......||+||+++|++..+...+. +.+.....+...+.+
T Consensus 53 lv~wl~~v~~~~~l--~~~tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p~-l~~~~~i~~~~~~~~ 129 (283)
T 1w98_B 53 LLDWLMEVCEVYKL--HRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPK-LHQFAYVTDGACSGD 129 (283)
T ss_dssp HHHHHHHHHHHTTC--BHHHHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCCC-HHHHHHTTTTSSCHH
T ss_pred HHHHHHHHHHHhCC--CccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCCc-HHHHHHHHcCCCCHH
Confidence 34555555543233 334456788888776543 34457888999999999999976542211 112211112234556
Q ss_pred HHHHHHHHHHHHH
Q psy7372 266 DLIEAVRKIRTLV 278 (352)
Q Consensus 266 ~l~~~i~~i~~l~ 278 (352)
++...=..|.+-+
T Consensus 130 ei~~mE~~IL~~L 142 (283)
T 1w98_B 130 EILTMELMIMKAL 142 (283)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 6666555555555
No 43
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=43.76 E-value=62 Score=23.74 Aligned_cols=28 Identities=18% Similarity=0.575 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHH--HHHhccCC
Q psy7372 86 QLRDFCKRFSPPMPKVVIGTAFHYL--KRFYLNNS 118 (352)
Q Consensus 86 ~I~~i~~~l~~~Lp~~V~aTAi~yf--~RFyl~~S 118 (352)
-+.+++..++ ||..++ .++| +|||.++.
T Consensus 37 ~r~~La~~tG--L~~~~I---qVWFQNrR~~~~~~ 66 (71)
T 1wi3_A 37 AIHTLSAQLD--LPKHTI---IKFFQNQRYHVKHS 66 (71)
T ss_dssp HHHHHHHHSC--CCHHHH---HHHHHHHHHHCCSS
T ss_pred HHHHHHHHhC--CCHHHH---HHhhccceeeecCC
Confidence 4567888999 998776 4677 59998875
No 44
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=36.48 E-value=69 Score=33.24 Aligned_cols=65 Identities=14% Similarity=0.273 Sum_probs=47.0
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCc-C---ccChHHHHHHHHHhhhccccCCCCHHHHHhhh
Q psy7372 86 QLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSV-M---DYHPKEILVTCVYLACKVEEFNLSISQFVSNI 152 (352)
Q Consensus 86 ~I~~i~~~l~~~Lp~~V~aTAi~yf~RFyl~~S~-~---~~~p~~I~~tcLfLA~K~EE~~~~i~~~v~~l 152 (352)
...++|+.|+ +...|...|...|..--..++. + +=+....+++.+|.||.+|+..+++.+++...
T Consensus 7 ~f~~lC~~Ln--~d~~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC~ly~~~~~~gn~vsLt~lLr~~ 75 (656)
T 4elj_A 7 DFTALCQKLK--IPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNI 75 (656)
T ss_dssp HHHHHHHHTT--CCHHHHHHHHHHHHHHHHHCSCC-----CCHHHHHHHHHHHHHHTTCCCSCHHHHHHHH
T ss_pred HHHHHHHHhC--CCHHHHHHHHHHHHHHHhccccccCCcccchHHhhhhhheeeeeccCCeeeHHHHHHHh
Confidence 3467899999 9999999999999887743222 1 22445556666666777898889988887654
No 45
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=22.07 E-value=3.4e+02 Score=24.09 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=37.7
Q ss_pred HHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHhccc
Q psy7372 186 PVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQE 245 (352)
Q Consensus 186 ~L~~~l~~l~~~~~l~~~~~l~~~A~~~l~ds~~Td~~L~y~Ps~IAlAal~lA~~~~~~ 245 (352)
.+..++.++....++. ....-.|-++++..+..-..-......||++|+++|++....
T Consensus 51 ~lvdWl~ev~~~~~l~--~eT~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~ 108 (252)
T 1f5q_B 51 VLTTWMFCVCKDLRQD--NNVFPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAY 108 (252)
T ss_dssp HHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666665443443 233457778877755443445667889999999999986543
No 46
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=21.97 E-value=1.1e+02 Score=23.18 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=35.4
Q ss_pred HHHHHHHhcccchhhHHHHHhcCCCccccHHHHHHHHHHHHHHHhCcCCCCCHHhHHHHHHHHH
Q psy7372 235 AVLQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVRKIRTLVSKPIESPSREMFKQLEKRLE 298 (352)
Q Consensus 235 al~lA~~~~~~~~~~y~~~~~~~~~~~~~l~~l~~~i~~i~~l~~~~~~~~~~~~v~~i~~KL~ 298 (352)
|+|++-...+..++. +...|++ -+..-++-+++.|.+++ +. .+.=.+.+..|.++|+
T Consensus 37 amyL~r~~t~~Sl~~-IG~~fgg----rdHsTV~ha~~ki~~~~-~~-d~~~~~~i~~l~~~l~ 93 (94)
T 1j1v_A 37 AMALAKELTNHSLPE-IGDAFGG----RDHTTVLHACRKIEQLR-EE-SHDIKEDFSNLIRTLS 93 (94)
T ss_dssp HHHHHHHHSCCCHHH-HHHHTTS----CCHHHHHHHHHHHHHHH-HH-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCcCHHH-HHHHhCC----CCHHHHHHHHHHHHHHH-Hh-CHHHHHHHHHHHHHHh
Confidence 567777777776665 3445533 35567788888888887 21 2223466777777663
Done!