RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7372
(352 letters)
>gnl|CDD|129660 TIGR00569, ccl1, cyclin ccl1. All proteins in this family for
which functions are known are cyclins that are
components of TFIIH, a complex that is involved in
nucleotide excision repair and transcription initiation.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, StanfordUniversity) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 305
Score = 314 bits (806), Expect = e-106
Identities = 141/289 (48%), Positives = 186/289 (64%), Gaps = 4/289 (1%)
Query: 37 SVEAELIALREAANQNFILEHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSP 96
+ E +L R AN F H E EA FL+ EE LV++Y+ +L DFC F P
Sbjct: 13 TSEEQLQEKRADANAKFREAHEEEEKVLEAKPIFLTPEEELDLVKYYEKRLLDFCSAFKP 72
Query: 97 PMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGDQ 156
MP V+GTA Y KRFYLNNSVM+YHPK I++TCV+LACKVEEFN+SI QFV N+K
Sbjct: 73 TMPTSVVGTAIMYFKRFYLNNSVMEYHPKIIMLTCVFLACKVEEFNVSIDQFVGNLKETP 132
Query: 157 QKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRS-QLRDPDRLRPGIDEFLD 215
KA + +L ELLL+QQL +HL VHNPYRP+EGFLIDIKTR L +P+ LR D+FL+
Sbjct: 133 LKALEQVLEYELLLIQQLNFHLIVHNPYRPLEGFLIDIKTRLPGLENPEYLRKHADKFLN 192
Query: 216 KMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVRKIR 275
+ LTDA LL++PSQIALAA+L +AS+ N+++Y+T+ L L LI+ +R++R
Sbjct: 193 RTLLTDAYLLYTPSQIALAAILHTASRAGLNMESYLTEQLSVPGNREELPQLIDIMRELR 252
Query: 276 TLVSKPIESPSREMFKQLEKRLEKCRNQANNPDSHIYKERMLESLNDDD 324
LV K E P E L+K+L++C + N S ++R DD
Sbjct: 253 ILVKKYEE-PRSEKVAALKKKLDECHSIEENLSSVKIRKRKGYE--DDT 298
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II
transcription initiation/nucleotide excision repair
factor TFIIH/TFIIK, cyclin H subunit [Cell division and
chromosome partitioning / Transcription / DNA
replication, recombination, and repair].
Length = 297
Score = 110 bits (276), Expect = 6e-28
Identities = 67/191 (35%), Positives = 99/191 (51%), Gaps = 10/191 (5%)
Query: 57 HRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLN 116
A D E L+ +E LV +Y + D C R + P V+ TA + RFYL
Sbjct: 22 QNAIELDLLVLEPELTLEKELNLVIYYLKLIMDLCTRLNLPQT--VLATAILFFSRFYLK 79
Query: 117 NSVMDYHPKEILVTCVYLACKVEEF--NLSISQFVSNIKGDQQKAS--DIILNNELLLMQ 172
NSV + ++ TCVYLACKVE+ ++SI F + ++ S + IL E L++
Sbjct: 80 NSVEEISLYSVVTTCVYLACKVEDTPRDISIESFEARDLWSEEPKSSRERILEYEFELLE 139
Query: 173 QLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIA 232
L + L VH+PY+ +EGFL D+ Q +D +L + ++ TD CLL+ P IA
Sbjct: 140 ALDFDLHVHHPYKYLEGFLKDL----QEKDKYKLLQIAWKIINDALRTDLCLLYPPHIIA 195
Query: 233 LAAVLQSASKL 243
LAA+L + L
Sbjct: 196 LAALLIACEVL 206
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold. Protein binding domain
functioning in cell-cycle and transcription control.
Present in cyclins, TFIIB and Retinoblastoma (RB).The
cyclins consist of 8 classes of cell cycle regulators
that regulate cyclin dependent kinases (CDKs). TFIIB is
a transcription factor that binds the TATA box. Cyclins,
TFIIB and RB contain 2 copies of the domain.
Length = 88
Score = 64.6 bits (158), Expect = 2e-13
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 87 LRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSIS 146
LR K + + A + L RF L+ SV+ P + +YLA KVEE +
Sbjct: 9 LRRVAKALG--LSPETLTLAVNLLDRFLLDYSVLGRSPSLVAAAALYLAAKVEEIPPWLK 66
Query: 147 QFVSNIKGDQQKASDIILNNELLLM 171
V + + IL E LL+
Sbjct: 67 DLVHVTGYATE---EEILRMEKLLL 88
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and
Retinoblastoma. A helical domain present in cyclins and
TFIIB (twice) and Retinoblastoma (once). A protein
recognition domain functioning in cell-cycle and
transcription control.
Length = 83
Score = 59.9 bits (146), Expect = 1e-11
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 87 LRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSIS 146
LR CK + + + A + L RF + + Y P I +YLA K EE
Sbjct: 3 LRRVCKALN--LDPETLNLAVNLLDRFLSDYKFLKYSPSLIAAAALYLASKTEETPPWTK 60
Query: 147 QFVSNIKGDQQKASDIILNNELLLMQ 172
+ V + + IL E LL++
Sbjct: 61 ELVHYTGYFTE---EEILRMERLLLE 83
Score = 26.8 bits (60), Expect = 5.3
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 213 FLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQHANVR-LVDLIEAV 271
LD+ L +SPS IA AA+ ASK + L + +++
Sbjct: 23 LLDRFLSDYKFLKYSPSLIAAAALYL-ASKT---EETPPWTKELVHYTGYFTEEEILRME 78
Query: 272 RKI 274
R +
Sbjct: 79 RLL 81
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain. Cyclins regulate
cyclin dependent kinases (CDKs). Human cyclin-O is a
Uracil-DNA glycosylase that is related to other cyclins.
Cyclins contain two domains of similar all-alpha fold,
of which this family corresponds with the N-terminal
domain.
Length = 127
Score = 56.8 bits (138), Expect = 4e-10
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 105 TAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFN-LSISQFVSNIKGDQQKASDII 163
A +YL RF V + + VTC+ +A K EE S+ FV K + I
Sbjct: 54 LAVNYLDRFLSKQPVPRTKLQLVGVTCLLIAAKYEEIYPPSVEDFVYITDNAYTK--EEI 111
Query: 164 LNNELLLMQQLKYHLT 179
L ELL++ L + L+
Sbjct: 112 LRMELLILSTLNWDLS 127
>gnl|CDD|236414 PRK09213, PRK09213, pur operon repressor; Provisional.
Length = 271
Score = 34.0 bits (79), Expect = 0.090
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 187 VEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQEN 246
F+ ++ R L +PDR+ PG +L +L+D LL +PS + + +++ +
Sbjct: 80 AREFVEELCER--LSEPDRILPG--GYL---YLSD--LLGNPSILRKIGRIIASAFADKK 130
Query: 247 LDAYVT 252
+DA +T
Sbjct: 131 IDAVMT 136
>gnl|CDD|109440 pfam00382, TFIIB, Transcription factor TFIIB repeat.
Length = 71
Score = 30.3 bits (69), Expect = 0.22
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 98 MPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVS 150
+PK V A K +N + P+ I C+Y+AC++EE ++ + S
Sbjct: 10 LPKKVADAANELAKLALDDNLLKGRSPESIAAACLYIACRLEEVKRTLKEISS 62
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain. Cyclins regulate
cyclin dependent kinases (CDKs). Human CCNO is a
Uracil-DNA glycosylase that is related to other cyclins.
Cyclins contain two domains of similar all-alpha fold,
of which this family corresponds with the C-terminal
domain.
Length = 117
Score = 30.7 bits (70), Expect = 0.39
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 219 LTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVRKIRTLV 278
L L + PS IA AAV + L T+TL + DL V+ + L+
Sbjct: 33 LDYDFLKYPPSLIAAAAVYLARKTLGSP---PWTETLE-HYTGYSEEDLKPCVKLLLELL 88
Query: 279 SKPIESPSREMFK 291
+ S + + K
Sbjct: 89 LRAPNSKLQAVRK 101
>gnl|CDD|226793 COG4343, COG4343, CRISPR-associated protein, RecB family
exonuclease [Defense mechanisms].
Length = 281
Score = 30.9 bits (70), Expect = 0.85
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 4/79 (5%)
Query: 251 VTQTLLGQ--HANVRLVDLIEAVRKIRTLVSKPIESPSREMFKQLEKRLEKCRNQANNPD 308
LLG H IE + + P ES + + ++ + N
Sbjct: 73 GFPLLLGAAIHEAFAKA--IEEHKSLIYSGESPRESVLEDAREMANILAKRVWARLNEYC 130
Query: 309 SHIYKERMLESLNDDDESA 327
Y E + +SA
Sbjct: 131 EISYMAVRSEKASRTSDSA 149
>gnl|CDD|216744 pfam01857, RB_B, Retinoblastoma-associated protein B domain. The
crystal structure of the Rb pocket bound to a
nine-residue E7 peptide containing the LxCxE motif,
shared by other Rb-binding viral and cellular proteins,
shows that the LxCxE peptide binds a highly conserved
groove on the B domain. The B domain has a cyclin fold.
Length = 130
Score = 29.7 bits (67), Expect = 1.1
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 85 LQLRDFCKRFS-PPMPKVVIGTAFHYLKRFYLNNS---VMDYHPKEILVTCVYLACKVEE 140
++LRD C+R S + I T F + L +MD H +IL+ +Y KV++
Sbjct: 16 VRLRDLCERLSLSEELREKIWTLFEHT----LQQETELMMDRHLDQILLCAIYGIAKVKQ 71
Query: 141 FNLSISQFVSNIKGDQQ 157
+L + + + Q
Sbjct: 72 EDLKFKEIMRAYRKQPQ 88
>gnl|CDD|219841 pfam08438, MMR_HSR1_C, GTPase of unknown function C-terminal.
This domain is found at the C-terminus of pfam01926 in
archaeal and eukaryotic GTP-binding proteins. The
C-terminal domain of the GTP-binding proteins is
necessary for the complete activity of the protein of
interacting with the 50S ribosome and binding of both
adenine and guanine nucleotides, with a preference for
guanine nucleotides.
Length = 109
Score = 29.1 bits (66), Expect = 1.3
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 36 CSVEAELIALREAANQNFI 54
S EAEL ALR+AA I
Sbjct: 29 TSAEAEL-ALRKAAKAGLI 46
>gnl|CDD|132602 TIGR03563, perox_SACOL1771, peroxiredoxin, SACOL1771 subfamily.
This protein family belongs to the OsmC/Ohr family
(pfam02566, OsmC-like protein) of peroxiredoxins.
Length = 138
Score = 29.4 bits (66), Expect = 1.6
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 208 PGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQHANVRLVDL 267
PG+ D+M L A + I LAA+L+ A E L + +VD+
Sbjct: 37 PGVGTNPDEMLLGAAATCYI---ITLAAMLERAGLEDEKL----------TLESEGIVDV 83
Query: 268 IEAVRKIRTLVSKPIESPSREMFKQLEKRLEKCRNQANN 306
V ++ P +E + LEK+ K +A +
Sbjct: 84 TNGVFTYEKIIHYPKIVLKKEAKQNLEKKAPKLAKKAES 122
>gnl|CDD|236261 PRK08412, flgL, flagellar hook-associated protein FlgL; Validated.
Length = 827
Score = 30.2 bits (68), Expect = 1.9
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 282 IESPSREMFKQLEKRLEKCRNQANNPDS 309
I+ PS F QL+ + R PD+
Sbjct: 699 IDDPSVNFFDQLDNIITAVRKGIYRPDA 726
>gnl|CDD|178274 PLN02669, PLN02669, xylulokinase.
Length = 556
Score = 29.4 bits (66), Expect = 3.0
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 51 QNFILEHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPM-PKVVIGT 105
+NF E L +EE F SE R ++ L +R +RF P+ PK +I T
Sbjct: 398 ENFSGEALDGLVEEEV-GEFDPPSEVRAIIEGQFLSMRAHAERFGMPVPPKRIIAT 452
>gnl|CDD|182791 PRK10865, PRK10865, protein disaggregation chaperone; Provisional.
Length = 857
Score = 29.4 bits (66), Expect = 3.4
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 265 VDLI-EAVRKIRTLV-SKPIESPSREMFKQLEKRL--EKCRNQANNPDSHIYKERMLESL 320
+DLI EA IR + SKP E +L++R+ K QA +S ++ L+ L
Sbjct: 391 IDLIDEAASSIRMQIDSKP------EELDRLDRRIIQLKLEQQALMKESDEASKKRLDML 444
Query: 321 NDDDESAARRYSQLSQKENA 340
N++ R+YS+L ++ A
Sbjct: 445 NEELSDKERQYSELEEEWKA 464
>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed.
Length = 282
Score = 29.0 bits (66), Expect = 4.0
Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 90 FCKRFSPPMPKVVIGTAF 107
F KR++ +P+VV+G AF
Sbjct: 129 FMKRYTH-LPQVVLGAAF 145
>gnl|CDD|118874 pfam10353, DUF2430, Protein of unknown function (DUF2430). This is
a family of short, 111 residue, proteins found in S.
pombe. The function is not known.
Length = 107
Score = 27.6 bits (61), Expect = 4.2
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 205 RLRPGIDEFLDKMFLTDACLLFSPSQIALAA---VLQSASKLQENLDAYVTQTLLGQH 259
+L P E L +LF + I + A +L + +++ + DAY+ Q L GQ+
Sbjct: 28 KLPPKYAELLANAIDQHGLMLFDTADIRIEAYNYLLNNITEINNDTDAYLCQLLTGQY 85
>gnl|CDD|130804 TIGR01743, purR_Bsub, pur operon repressor, Bacillus subtilis type.
This model represents the puring operon repressor PurR
of low-GC Gram-positive bacteria. This homodimeric
repressor contains a large region homologous to
phosphoribosyltransferases and is inhibited by
5-phosphoribosyl 1-pyrophosphate [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis, Regulatory functions, DNA interactions].
Length = 268
Score = 28.6 bits (64), Expect = 4.2
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 197 RSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVT 252
L +P+R+ PG ++LTD +L PS ++ + ++ + +DA +T
Sbjct: 86 CQSLSEPERILPG-----GYLYLTD--ILGKPSILSKIGKILASVFAEREIDAVMT 134
>gnl|CDD|107359 cd06364, PBP1_CaSR, Ligand-binding domain of the CaSR
calcium-sensing receptor, which is a member of the
family C receptors within the G-protein coupled receptor
superfamily. Ligand-binding domain of the CaSR
calcium-sensing receptor, which is a member of the
family C receptors within the G-protein coupled receptor
superfamily. CaSR provides feedback control of
extracellular calcium homeostasis by responding
sensitively to acute fluctuations in extracellular
ionized Ca2+ concentration. This ligand-binding domain
has homology to the bacterial leucine-isoleucine-valine
binding protein (LIVBP) and a leucine binding protein
(LBP). CaSR is widely expressed in mammalian tissues and
is active in tissues that are not directly involved in
extracellular calcium homeostasis. Moreover, CaSR
responds to aromatic, aliphatic, and polar amino acids,
but not to positively charged or branched chain amino
acids, which suggests that changes in plasma amino acid
levels are likely to modulate whole body calcium
metabolism. Additionally, the family C GPCRs includes at
least two receptors with broad-spectrum amino
acid-sensing properties: GPRC6A which recognizes basic
and various aliphatic amino acids, its gold-fish homolog
the 5.24 chemoreceptor, and a specific taste receptor
(T1R) which responds to aliphatic, polar, charged, and
branched amino acids, but not to aromatic amino acids.
Length = 510
Score = 28.8 bits (64), Expect = 4.4
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 202 DPDRLRPGIDEFLDKMFLTDACLLFSP--SQIALAAVLQSASKLQENLDAYV 251
D D RPGI++F ++ D C+ FS SQ + +Q ++ +N A V
Sbjct: 196 DDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQRVVEVIQNSTAKV 247
>gnl|CDD|214729 smart00577, CPDc, catalytic domain of ctd-like phosphatases.
Length = 148
Score = 27.6 bits (62), Expect = 6.6
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 205 RLRPGIDEFLDKM 217
+ RPG+DEFL +
Sbjct: 45 KKRPGVDEFLKRA 57
>gnl|CDD|227418 COG5086, COG5086, Uncharacterized conserved protein [Function
unknown].
Length = 218
Score = 28.0 bits (62), Expect = 6.6
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 5/92 (5%)
Query: 64 EEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYH 123
+E S LS E +H + + P+ FH + F + D
Sbjct: 111 DENSLILLSGGELAYYEKHSLIYIDLLKDSDLYVTPQ-----KFHKVHDFVGFYCMTDEP 165
Query: 124 PKEILVTCVYLACKVEEFNLSISQFVSNIKGD 155
V E + + + KGD
Sbjct: 166 DWNKFVFGAVNEDLQENDTVGEKELLELFKGD 197
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase.
Length = 800
Score = 28.3 bits (63), Expect = 7.3
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 208 PGID-EFLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQHANVRLVD 266
PG+D E L K+ D LFSPS A A + E L+ V Q G NV VD
Sbjct: 251 PGLDWEKLLKLQCQDGSFLFSPSSTAFALMQTKDENCLEYLNKAV-QRFNGGVPNVYPVD 309
Query: 267 LIE---AVRKIRTL-VSKPIESPSRE 288
L E AV +++ L +S+ E +E
Sbjct: 310 LFEHIWAVDRLQRLGISRYFEPEIKE 335
>gnl|CDD|222023 pfam13281, DUF4071, Domain of unknown function (DUF4071). This
domain is found at the N-terminus of many
serine-threonine kinase-like proteins.
Length = 365
Score = 28.1 bits (63), Expect = 7.4
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 293 LEKRLEKCRNQANNPDSH-----IYKERMLESLNDDDES 326
L + LEK + PD + IYK+R LES D ES
Sbjct: 196 LLEALEKKEGPS--PDMYCLCGRIYKDRFLESEYTDRES 232
>gnl|CDD|226399 COG3882, FkbH, Predicted enzyme involved in methoxymalonyl-ACP
biosynthesis [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 574
Score = 28.2 bits (63), Expect = 7.4
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 288 EMFKQLEKRLEKCRNQANNPDSHIYKERMLESLNDDDESAARRYSQLSQKEN 339
+ Q KR E+ + ++ + + ++ M +++ DE R SQL+QK N
Sbjct: 385 NSYGQNAKR-EELKEESGSLEEYLKNLEMRLTVSKFDEVNIPRISQLTQKTN 435
>gnl|CDD|182730 PRK10787, PRK10787, DNA-binding ATP-dependent protease La;
Provisional.
Length = 784
Score = 28.4 bits (63), Expect = 7.5
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 265 VDLIEAVRKIRTLVSKPIESPSREMF--KQLEKRLEKCRNQANNPDSHIYKERMLESLND 322
+DL++ ++IR V K +E RE + +Q++ ++ + PD + +R ++
Sbjct: 204 IDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKID---- 259
Query: 323 DDESAARRYSQLSQKENAILEHMKGISKLS 352
AA+ + +K A L+ +K +S +S
Sbjct: 260 ----AAKMPKEAKEKAEAELQKLKMMSPMS 285
>gnl|CDD|215854 pfam00316, FBPase, Fructose-1-6-bisphosphatase.
Length = 325
Score = 28.1 bits (63), Expect = 7.5
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 150 SNIKGDQQKASDIILNNELLLMQQLKY 176
+N++GD+QK D++ ++ L LK
Sbjct: 53 TNVQGDEQKKLDVLADD--LFRAALKA 77
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 28.2 bits (63), Expect = 8.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 263 RLVDLIEAVRKIRTLVSKPIESPSREM 289
R+ +IE R IR +KP+++P +EM
Sbjct: 833 RMQTVIELARNIRERHNKPLKTPLKEM 859
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 28.0 bits (63), Expect = 9.3
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 18/127 (14%)
Query: 217 MFLTDACLLFSPSQIALAAV---LQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVRK 273
LL S A AA L + + +Q LDA Q LL + DL + +
Sbjct: 12 FIAFLFLLLCLSSAFARAASNGDLPTEADVQAQLDALNKQKLLEAEDKLVQQDLEQTLAL 71
Query: 274 IRTLVSKPIESPSREMFKQLEKRLEKCRNQANNPDSHIYK-ERMLESL-NDDDESAARRY 331
+ + + ++ E+ + Q + + + + LE+L +D+DE
Sbjct: 72 LDKI-------------DRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETL 118
Query: 332 SQLSQKE 338
S LS ++
Sbjct: 119 STLSLRQ 125
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.384
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,005,082
Number of extensions: 1762068
Number of successful extensions: 1710
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1701
Number of HSP's successfully gapped: 58
Length of query: 352
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 254
Effective length of database: 6,590,910
Effective search space: 1674091140
Effective search space used: 1674091140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)