RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7372
(352 letters)
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 234 bits (599), Expect = 2e-75
Identities = 129/298 (43%), Positives = 187/298 (62%), Gaps = 8/298 (2%)
Query: 37 SVEAELIALREAANQNFILEHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSP 96
S E +L LR AN+ F + A FL EE L ++Y+ +L +FC F P
Sbjct: 14 SSEEQLARLRADANRKFRCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKP 73
Query: 97 PMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGD- 155
MP+ V+GTA Y KRFYLNNSVM+YHP+ I++TC +LACKV+EFN+S QFV N++
Sbjct: 74 AMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESP 133
Query: 156 --QQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQ-LRDPDRLRPGIDE 212
Q+KA + IL ELLL+QQL +HL VHNPYRP EGFLID+KTR L +P+ LR D+
Sbjct: 134 LGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADD 193
Query: 213 FLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVR 272
FL+++ LTDA LL++PSQIAL A+L SAS+ +++Y++++L+ + L L++ ++
Sbjct: 194 FLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMK 253
Query: 273 KIRTLVSKPIESPSREMFKQLEKRLEKCRNQANNPDSHIYKERMLESLNDDDESAARR 330
+R LV K E P E L+++L++C + + K + E DDD + +
Sbjct: 254 SMRNLVKKY-EPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYE---DDDYVSKKS 307
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET:
BAX; 2.20A {Homo sapiens}
Length = 285
Score = 160 bits (406), Expect = 4e-47
Identities = 62/266 (23%), Positives = 110/266 (41%), Gaps = 28/266 (10%)
Query: 58 RAELTDEEASE-HFLSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLN 116
+ +L E + FLS E L + ++ + + + VI TA Y KRFY
Sbjct: 20 KQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLK--LRQQVIATATVYFKRFYAR 77
Query: 117 NSVMDYHPKEILVTCVYLACKVEEFNLSI-------------SQFVSNIKGDQQKASDII 163
S+ P + TCV+LA KVEEF + ++F + + I
Sbjct: 78 YSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHI 137
Query: 164 LNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDAC 223
L E L++ + L V++PYRP+ ++ D+ D L P ++ + TD C
Sbjct: 138 LECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE------DMLLPLAWRIVNDTYRTDLC 191
Query: 224 LLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVRKIRTLVSKPIE 283
LL+ P IALA + + Q++ + + +V + ++E +R I L +
Sbjct: 192 LLYPPFMIALACLHVACVVQQKDARQWFAEL------SVDMEKILEIIRVILKLYEQWKN 245
Query: 284 SPSREMFKQLEKRLEKCRNQANNPDS 309
R+ + ++ K + N+
Sbjct: 246 FDERKEMATILSKMPKPKPPPNSEGE 271
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat
domains, transcription-cell cycle complex; 3.00A
{Schizosaccharomyces pombe}
Length = 235
Score = 145 bits (366), Expect = 7e-42
Identities = 42/226 (18%), Positives = 82/226 (36%), Gaps = 20/226 (8%)
Query: 61 LTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYL-NNSV 119
+ L + + ++ F R + + V+ TA L+R+ L N
Sbjct: 11 FLSTD--LESLEPTCLSKDTIYQWKVVQTFGDRLR--LRQRVLATAIVLLRRYMLKKNEE 66
Query: 120 MDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGDQQK----ASDIILNNELLLMQQLK 175
+ + ++ TC+YL+CKVEE + I + + I E ++ L
Sbjct: 67 KGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVLD 126
Query: 176 YHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAA 235
L VH+PY +E D + ++ + + CL+ P Q+A AA
Sbjct: 127 AFLIVHHPYTSLEQAFHDGII------NQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAA 180
Query: 236 VLQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVRKIRTLVSKP 281
+L S + + + + +I V++I ++
Sbjct: 181 LLISCCNDENTIPKLLD-----LIKSTDAFKVILCVQRIISIYYFE 221
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive
transcription elongation factor, P-TEFB; 1.50A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 258
Score = 138 bits (350), Expect = 3e-39
Identities = 41/249 (16%), Positives = 89/249 (35%), Gaps = 19/249 (7%)
Query: 47 EAANQNFILEHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTA 106
+ + + + +L + L + E R + D R + + T
Sbjct: 9 DHTKPCWYWD-KKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLG--LHYDTLATG 65
Query: 107 FHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKG---------DQQ 157
Y RFY+ +S + C++LA KVEE + +
Sbjct: 66 IIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGD 125
Query: 158 KASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKM 217
+ ++ E +L+Q +K+ L V +PY+ + + +K +L F++
Sbjct: 126 DPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNK--IQKLVQMAWTFVNDS 183
Query: 218 FLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQ-----HANVRLVDLIEAVR 272
T L + P IA+A + + + + + ++ + + +V + L +
Sbjct: 184 LCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICH 243
Query: 273 KIRTLVSKP 281
+I L S+
Sbjct: 244 QILDLYSQG 252
>2ivx_A Cyclin-T2; transcription regulation, cell division,
phosphorylation, NU protein, cell cycle, transcription;
1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A
3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B*
3lq5_B* 3my1_B* 3tn8_B*
Length = 257
Score = 128 bits (322), Expect = 3e-35
Identities = 41/252 (16%), Positives = 92/252 (36%), Gaps = 24/252 (9%)
Query: 49 ANQNFILEHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFH 108
A+ + R +L + + + A +E + +++ +R + + ++ I TA
Sbjct: 1 ASSRWFFT-REQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLN--VSQLTINTAIV 57
Query: 109 YLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGDQQKAS-------- 160
Y+ RFY+++S ++ I T ++LA KVEE + +
Sbjct: 58 YMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTKCD 117
Query: 161 ------DIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFL 214
++ E +++Q L + +T+ +P+ V ++ D +
Sbjct: 118 AYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRA-----SKDLAQTSYFMAT 172
Query: 215 DKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQH--ANVRLVDLIEAVR 272
+ + LT CL + P+ IA + + + ++ V L L E
Sbjct: 173 NSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTH 232
Query: 273 KIRTLVSKPIES 284
+ ++ K
Sbjct: 233 EFLQILEKTPNR 244
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P-
TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1
a.74.1.1 PDB: 2w2h_C
Length = 358
Score = 129 bits (324), Expect = 1e-34
Identities = 42/280 (15%), Positives = 94/280 (33%), Gaps = 35/280 (12%)
Query: 58 RAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNN 117
R +L + + + +E + L+D +R + + ++ I TA Y+ RFY+
Sbjct: 16 REQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLN--VSQLTINTAIVYMHRFYMIQ 73
Query: 118 SVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGDQQKAS--------------DII 163
S + + ++LA KVEE + + +
Sbjct: 74 SFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDL 133
Query: 164 LNNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDAC 223
+ E +++Q L + LT+ +P+ V ++ D + + + LT
Sbjct: 134 VILESIILQTLGFELTIDHPHTHVVKCTQLVRA-----SKDLAQTSYFMATNSLHLTTFS 188
Query: 224 LLFSPSQIALAAVLQSASKLQ-------------ENLDAYVTQTLLGQHANVRLVDLIEA 270
L ++P +A + + E +DA VT LL + ++E
Sbjct: 189 LQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELL-DELTHEFLQILEK 247
Query: 271 VRKIRTLVSKPIESPSREMFKQLEKRLEKCRNQANNPDSH 310
+ + + K ++ ++ ++
Sbjct: 248 TPNRLKRIWNWRACEAAKKTKADDRGTDEKTSEQGGTGGG 287
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 8e-11
Identities = 55/407 (13%), Positives = 112/407 (27%), Gaps = 149/407 (36%)
Query: 9 RSITLCVVKIWTSDPLKFFSEGQSYGQCSVEAELI---ALREAANQ---NFILEHRAELT 62
R +TL S+G S+E L+ A A+Q F + E T
Sbjct: 7 RPLTL------------------SHG--SLEHVLLVPTASFFIASQLQEQF-NKILPEPT 45
Query: 63 DEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPMPKV----VIGTAFHYLKRFYLNNS 118
+ A++ + E LV + L + P V+ + YL +
Sbjct: 46 EGFAADDEPTTPAE--LVGKF-LG---YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 119 VMDYH----------PKEI-----LVTCVYLACKVEEFNLSISQFVSN--IKGDQQKASD 161
D H + L+ A + + ++ + + +
Sbjct: 100 --DIHALAAKLLQENDTTLVKTKELIKNYITARIMA--KRPFDKKSNSALFRAVGEGNAQ 155
Query: 162 IIL------NNELLL--MQQLKYHLTVHNPYRPVEGFLIDI----------------KTR 197
++ N + ++ L + Y + G LI K
Sbjct: 156 LVAIFGGQGNTDDYFEELRDL------YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 198 SQ-------LRDPDRLRPGIDEFLDK-------MFLTDAC--------LLFSPSQIA--- 232
+Q L +P P D +L + + L F+P ++
Sbjct: 210 TQGLNILEWLENPSN-TPDKD-YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 233 ----------LAAVLQSASK----LQENLDAYVTQTLL------GQHANVRLVDLIEAVR 272
+ AV + + ++ +T +L A L ++
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT--VLFFIGVRCYEA-YPNTSLPPSIL 324
Query: 273 KIRTLVSKPIESPSREMF-------KQLEKRLEKCRNQANNPDSHIY 312
+ ++ + SP M +Q++ + K N +
Sbjct: 325 EDSLENNEGVPSP---MLSISNLTQEQVQDYVNKT-NSHLPAGKQVE 367
Score = 45.0 bits (106), Expect = 3e-05
Identities = 40/235 (17%), Positives = 75/235 (31%), Gaps = 71/235 (30%)
Query: 127 ILV-TCVYLACKV--EEFNLSISQFVSNIKGDQQKASDIILNNELLLMQQLKYHLTVHNP 183
+LV T + E+FN + + D + + EL+ K+ L
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA----ELVG----KF-L----- 65
Query: 184 YRPVEGFLIDIKTRSQLRDPDR-LRPGIDEFLDKMFLTDACLLFSPSQI-ALAAVLQSAS 241
G++ + S++ D+ L + EF + +L + I ALAA
Sbjct: 66 -----GYVSSLVEPSKVGQFDQVLNLCLTEF-ENCYLEG-------NDIHALAA------ 106
Query: 242 KLQENLDAYVTQTLLGQHANVRLVDLIEAVRKIRTLVSKPIESPSR-EMFKQLEKRLEKC 300
L TL+ +LI+ R + +P + S +F+ + + +
Sbjct: 107 ----KLLQENDTTLVKTK------ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 301 RN----QANNPD-----SHIYK-------------ERMLESLNDDDESAARRYSQ 333
Q N D +Y+ L L A + ++Q
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin,
cell cycle, signaling protein; 2.90A {Human herpesvirus
8} SCOP: a.74.1.1 a.74.1.1
Length = 257
Score = 54.4 bits (131), Expect = 1e-08
Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 7/155 (4%)
Query: 129 VTCVYLACKVEEFN-LSISQFVSNIKGDQQKASDIILNNELLLMQQLKYHLTVHNPYRPV 187
C+ +A K+ +S S D ++ ++ E L+++L +
Sbjct: 98 SACLLVASKLRSLTPISTSSLCY-AAADSFSRQEL-IDQEKELLEKLAWRTEAVLATDVT 155
Query: 188 EGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQENL 247
L+ + SQ D ++ + K + S I+ A
Sbjct: 156 SFLLLKLVGGSQ--HLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQ 213
Query: 248 DAYVTQTL--LGQHANVRLVDLIEAVRKIRTLVSK 280
D + + L + L AV +I T VS
Sbjct: 214 DTHSGGVVPQLASILGCDVSVLQAAVEQILTSVSD 248
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation,
ATP-BIN cell division, disease mutation, kinase; 3.00A
{Homo sapiens}
Length = 306
Score = 53.6 bits (129), Expect = 3e-08
Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 10/190 (5%)
Query: 106 AFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFN-LSISQFVSNIKGDQQKASDIIL 164
A +YL R+ + + C+ LA K+ E L+I + +
Sbjct: 95 AMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSP--RQLR 152
Query: 165 NNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQL-RDPDRLRPGIDEFLDKMFLTD-A 222
+ E+L++ +LK+ L + FL I R L RD L + + TD
Sbjct: 153 DWEVLVLGKLKWDLAAVIAHD----FLAFILHRLSLPRDRQALVKKHAQTFLALCATDYT 208
Query: 223 CLLFSPSQIALAAVLQSASKLQEN-LDAYVTQTLLGQHANVRLVDLIEAVRKIRTLVSKP 281
++ PS IA ++ + L + LL + L +I + +
Sbjct: 209 FAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRES 268
Query: 282 IESPSREMFK 291
+ ++
Sbjct: 269 LREAAQTSSS 278
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase,
chromosomal rearrangement, ATP-binding, transferase,
polymorphism, cell division; 2.30A {Homo sapiens} PDB:
2w99_A 2w9f_A 2w9z_A
Length = 271
Score = 52.4 bits (126), Expect = 6e-08
Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 14/165 (8%)
Query: 129 VTCVYLACKVEEFN-LSISQFVSNIKGDQQKASDIILNNELLLMQQLKYHLTVHNPYRPV 187
TC+++A K++E L+ + I D + +L ELLL+ +LK++L P+
Sbjct: 104 ATCMFVASKMKETIPLTAEKLC--IYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHD-- 159
Query: 188 EGFLIDIKTRSQLRD--PDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQ- 244
F+ ++ + +R F+ + PS +A +V+ + L
Sbjct: 160 --FIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNL 217
Query: 245 ----ENLDAYVTQTLLGQHANVRLVDLIEAVRKIRTLVSKPIESP 285
L Y L + L +I L+ +
Sbjct: 218 RSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESSLRQA 262
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 3e-07
Identities = 57/268 (21%), Positives = 94/268 (35%), Gaps = 87/268 (32%)
Query: 4 FPRGHR--SITLCVVKIW----TSDPLKFFSEGQSYGQCSVEAELIALREAANQNFI--- 54
FP +I L + IW SD + ++ Y L+ + + I
Sbjct: 381 FPPSAHIPTILLSL--IWFDVIKSDVMVVVNKLHKYS-------LVEKQPKESTISIPSI 431
Query: 55 -LEHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRF 113
LE + +L + E + H R +V HY + PP Y F
Sbjct: 432 YLELKVKL-ENEYALH-------RSIVDHYNIPKTFDSDDLIPP-------YLDQY---F 473
Query: 114 YLNNSVMDYHPKEILVTCVYLACKVEEF-----NLSISQFVSN-IK--GDQQKASDIILN 165
Y S + +H K I ++ F + F+ I+ AS ILN
Sbjct: 474 Y---SHIGHHLKNIE-----HPERMTLFRMVFLDFR---FLEQKIRHDSTAWNASGSILN 522
Query: 166 NELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLL 225
+QQLK+ Y+P ++ D + +RL I +FL K+ + L+
Sbjct: 523 ----TLQQLKF-------YKP---YICDNDPK-----YERLVNAILDFLPKI---EENLI 560
Query: 226 FSPS----QIAL-----AAVLQSASKLQ 244
S +IAL A ++ ++Q
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 47.2 bits (111), Expect = 6e-06
Identities = 44/265 (16%), Positives = 88/265 (33%), Gaps = 48/265 (18%)
Query: 108 HYLKRFYLNNSVMDYHPKEILVTCVY-------LACK-VEEFNLSI--SQFVSNI--KGD 155
H+ Y K+IL V+ CK V++ SI + + +I D
Sbjct: 2 HHHHHMDFETGEHQYQYKDILS--VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 156 QQKASDIILNNELLLMQQLK-YHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFL 214
+ + LL +Q + V R FL+ +++ R P + E
Sbjct: 60 AVSGTLRLF--WTLLSKQEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPSMMTRMYIEQR 116
Query: 215 DKMFLTDACLLFSPSQIA---LAAVLQSA-SKLQENLDAYVT-QTLLGQHANVRLVDLIE 269
D+++ + +F+ ++ L+ A +L+ V +LG + ++
Sbjct: 117 DRLYNDNQ--VFAKYNVSRLQPYLKLRQALLELRPA--KNVLIDGVLGSGKTW-VA--LD 169
Query: 270 AVRKIRTLVSKP----------IESPSR--EMFKQLEKRLEKCRNQANNPDSHIYKERML 317
+ SP EM ++L +++ N + D + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSNIKLRI 227
Query: 318 ESLNDDDESAARRYSQLSQKENAIL 342
S+ RR + EN +L
Sbjct: 228 HSIQA----ELRRLLKSKPYENCLL 248
Score = 44.1 bits (103), Expect = 5e-05
Identities = 48/368 (13%), Positives = 106/368 (28%), Gaps = 105/368 (28%)
Query: 2 HQFPRGHRSITLCVVK-IWTSDPLKFFSEGQSYGQCSVEAELIALREAANQNFI------ 54
+ L V+ + + F+ C + L+ R +F+
Sbjct: 241 KPYENC-----LLVLLNVQNAKAWNAFN-----LSCKI---LLTTRFKQVTDFLSAATTT 287
Query: 55 ---LEHRAE-LTDEEASEHFLSASEERVLVRHYQLQL-RDFCKRFSPPMPKVVIGTAFH- 108
L+H + LT +E L + R L R+ P +I +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQ------DLPREVLTTN--PRRLSIIAESIRD 339
Query: 109 YLKRF----YLNNSVMDYHPKEILVTCV-----------YLACKVEEFNLSISQFVSNI- 152
L + ++N + I+ + + + V + I + ++
Sbjct: 340 GLATWDNWKHVNCDKL----TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 153 --KGDQQKASDII--LNNELLLMQQLK-YHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLR 207
+ ++ L+ L+ +Q K +++ + I ++ + +L + L
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS---------IYLELKVKLENEYALH 446
Query: 208 PGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQH-ANVRLVD 266
+D + S + LD Y +G H N+ +
Sbjct: 447 ---RSIVDHYNIPKT--------------FDSDDLIPPYLDQYFYS-HIGHHLKNIEHPE 488
Query: 267 LIEAVR-----------KIR-TLVSKPIESPSREMFKQLEKRLEKCRNQANNPDSHIYKE 314
+ R KIR + +QL+ D+ E
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC------DNDPKYE 542
Query: 315 RMLESLND 322
R++ ++ D
Sbjct: 543 RLVNAILD 550
Score = 42.9 bits (100), Expect = 1e-04
Identities = 53/340 (15%), Positives = 112/340 (32%), Gaps = 70/340 (20%)
Query: 25 KFFSEG--QSYG--QCSVEAELIALREAANQNFILEHRAELTDEEA-SEHFLSASEERVL 79
KF E +Y ++ E + +I + D + +++ +S + +
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 80 VRHYQLQLRDFCKRFSPPMPKVVI----GTAFHYLKRFYLNNSVMDYHPKEILVTCVYLA 135
+R L+LR P V+I G+ K + V L+
Sbjct: 140 LRQALLELR--------PAKNVLIDGVLGSG------------------KTWVALDVCLS 173
Query: 136 CKVEE-FNLSISQFVSNIKGDQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDI 194
KV+ + I F N+ + ++ + LL Q + + ++ + I
Sbjct: 174 YKVQCKMDFKI--FWLNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 195 KTRSQLRDPDRLRPGIDEF--LD--------KMFLTD-AC-LLFSPSQIALAAVLQSASK 242
+ LR + +P + L F + +C +L + + L +A+
Sbjct: 231 QAE--LRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSCKILLTTRFKQVTDFLSAATT 286
Query: 243 LQENLDAYV-------TQTLLGQHANVRLVDLIEAVRKIRTLVSKPIESPSREMFKQLEK 295
+LD + ++LL ++ + R DL V I E +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA----ESIRDGLA 342
Query: 296 RLEKCRNQANNPDSHIYKERMLESLNDDDESAARRYSQLS 335
+ ++ + + I E L L + + + +LS
Sbjct: 343 TWDNWKHVNCDKLTTII-ESSLNVLEPAEYR--KMFDRLS 379
Score = 37.5 bits (86), Expect = 0.007
Identities = 24/194 (12%), Positives = 59/194 (30%), Gaps = 55/194 (28%)
Query: 171 MQQLKYHLTVHNPYRP-VEGFLIDIKTRSQLRD-PDRLRPGI-DEFLDKMFLTDACLLFS 227
+ +Y Y+ + F +D D + + E +D
Sbjct: 11 TGEHQYQ------YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH----------- 53
Query: 228 PSQIALAAVLQSASKLQENLDAYVTQTLLGQHANV--RLVDLIEAVRK----IRTLVSKP 281
++ S + L + TLL + + + V+ E +R + + +
Sbjct: 54 --------IIMSKDAVSGTL--RLFWTLLSKQEEMVQKFVE--EVLRINYKFLMSPIKTE 101
Query: 282 IESPSREMFKQLEKRLEKCRNQANN-----PDSHIYKERMLESLNDDDESAARRYSQLSQ 336
PS + + R++ N ++ + + L + +L
Sbjct: 102 QRQPSMMT-----RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-------QALLELRP 149
Query: 337 KENAILEHMKGISK 350
+N +++ + G K
Sbjct: 150 AKNVLIDGVLGSGK 163
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent
kinase. protein/protein complex, transferase; 2.50A
{Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Length = 252
Score = 49.4 bits (118), Expect = 4e-07
Identities = 22/177 (12%), Positives = 51/177 (28%), Gaps = 9/177 (5%)
Query: 106 AFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEE-FNLSISQFVSNIKGDQQKASDIIL 164
A L +L+ + + + +++A KV + +Q + G A + L
Sbjct: 73 AVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLA-YLCGGATTADKL-L 130
Query: 165 NNELLLMQQLKYHLTVHNPYRPVEGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTD-AC 223
E+ + L + + L R+ + L D
Sbjct: 131 TLEVKSLDTLSWVADRCLSTDLICYIL---HIMHAPREDYLNIYNLCRPKIFCALCDGRS 187
Query: 224 LLFSPSQIALAAVLQSASKLQENLDAYVTQTLLGQHANVRLVDLIEAVRKIRTLVSK 280
+ P I LA + + Q+ + + + +L + + +
Sbjct: 188 AMKRPVLITLACMH--LTMNQKYDYYENRIDGVCKSLYITKEELHQCCDLVDIAIVS 242
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between
N-terminal and C-TERM domain of kinase, cell
cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus
saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A*
1xo2_A* 1bu2_A
Length = 254
Score = 43.5 bits (103), Expect = 4e-05
Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 18/159 (11%)
Query: 129 VTCVYLACKVEEFN-LSISQFVSNIKGDQQKASDIILNNELLLMQQLKYHLTVHNPYRPV 187
CV + K+ +++S+ + D + ++N E +++ LK+
Sbjct: 99 AACVLIGSKIRTVKPMTVSKLTY-LSCDCFTNLE-LINQEKDILEALKWDTEAVLATD-- 154
Query: 188 EGFLIDIKTRSQLRDPDRLRPGIDEFLDKMF----LTD-ACLLFSPSQIALAAVLQSASK 242
FLI + ++ + + L L SP I +L +
Sbjct: 155 --FLIPLCNALKIPEDLWPQ---LYEAASTTICKALIQPNIALLSPGLICAGGLLTTIET 209
Query: 243 LQENLDAYVTQTL--LGQHANVRLVDLIEAVRKIRTLVS 279
N + T L L N + ++ S
Sbjct: 210 DNTNCRPW-TCYLEDLSSILNFSTNTVRTVKDQVSEAFS 247
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like
fold, helix-turn-helix, transcription/DNA complex; 2.65A
{Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A
2phg_A 1vol_A*
Length = 207
Score = 42.3 bits (99), Expect = 8e-05
Identities = 34/207 (16%), Positives = 71/207 (34%), Gaps = 17/207 (8%)
Query: 76 ERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLA 135
+R ++ ++ ++ R + +P+ ++ + K+ Y S+ I C+Y+A
Sbjct: 2 DRAMMNAFK-EITTMADRIN--LPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIA 58
Query: 136 CKVEEFNLSISQFVSNIKGDQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFLIDIK 195
C+ E + + + + +++ L + T R
Sbjct: 59 CRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFC-------- 110
Query: 196 TRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYVTQTL 255
S L P +++ K D SP +A AA+ ++ E TQ
Sbjct: 111 --SNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEK----RTQKE 164
Query: 256 LGQHANVRLVDLIEAVRKIRTLVSKPI 282
+G A V V + ++ R I
Sbjct: 165 IGDIAGVADVTIRQSYRLIYPRAPDLF 191
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET:
TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Length = 283
Score = 42.0 bits (99), Expect = 1e-04
Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 21/165 (12%)
Query: 129 VTCVYLACKVEEFN-LSISQFVSNIKGDQQKASDIILNNELLLMQQLKYHLTVHNPYRPV 187
++ +++A K+EE + QF D + D IL EL++M+ LK+ L+ +
Sbjct: 98 ISSLFIAAKLEEIYPPKLHQFAYVT--DGACSGDEILTMELMIMKALKWRLSPLTIVSWL 155
Query: 188 EGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLL------FSPSQIALAAVLQSAS 241
++ P L D C+L F +A +A+ +S
Sbjct: 156 NVYMQVAYLNDLHEVLLPQYPQQIFIQIA-ELLDLCVLDVDCLEFPYGILAASALYHFSS 214
Query: 242 KLQENLDAYVTQTLLGQHANVRLVDLIEAVRKIRTLVSKPIESPS 286
++ + + + + D+ V+ + E+ S
Sbjct: 215 ----------SELMQ-KVSGYQWCDIENCVKWMVPFAMVIRETGS 248
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division),
ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear
protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP:
a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B*
1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B*
2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B*
2x1n_B* 1vyw_B* ...
Length = 260
Score = 40.4 bits (95), Expect = 5e-04
Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 23/170 (13%)
Query: 129 VTCVYLACKVEEFN-LSISQFVSNIKGDQQKASDIILNNELLLMQQLKYHLTVHNPYRPV 187
+ LA K EE +++FV I D + L E L+++ L + L +
Sbjct: 86 TAAMLLASKFEEIYPPEVAEFV-YITDDTYTKKQV-LRMEHLVLKVLTFDLAAPTVNQ-- 141
Query: 188 EGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFL------TDACLLFSPSQIALAAVLQSAS 241
FL Q + E L D L + PS IA AA +
Sbjct: 142 --FLTQYFLHQQPANCKV------ESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALY 193
Query: 242 KLQENLDAYVTQTLLGQHANVRLVDLIEAVRKIRTLVSKPIESPSREMFK 291
+ ++L+ + L L + + K + + + +
Sbjct: 194 TVTGQ---SWPESLI-RKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIRE 239
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB);
hyperthermophIle, ribosome binding, complex (ribosome
binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei}
SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Length = 200
Score = 39.6 bits (92), Expect = 6e-04
Identities = 32/192 (16%), Positives = 67/192 (34%), Gaps = 15/192 (7%)
Query: 71 LSASEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVT 130
+S + ER L +L + +P+ V A + + + ++
Sbjct: 1 VSDAAERNLAFALS-ELDRITAQLK--LPRHVEEEAARLYREAVRKGLIRGRSIESVMAA 57
Query: 131 CVYLACKVEEFNLSISQFVSNIKGDQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGF 190
CVY AC++ + ++ + + D+++ + L P V F
Sbjct: 58 CVYAACRLLKVPRTLDEIADIARVDKKEIGRSYR--FIARNLNLTPKKLFVKPTDYVNKF 115
Query: 191 LIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAY 250
+L +++R E LD+ + SP+ + AA+ ++ E
Sbjct: 116 A------DELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEK---- 165
Query: 251 VTQTLLGQHANV 262
TQ + + A V
Sbjct: 166 RTQREVAEVARV 177
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Length = 269
Score = 36.9 bits (86), Expect = 0.006
Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 21/116 (18%)
Query: 129 VTCVYLACKVEEFNL-SISQFVSNIKGDQQKASDIILNNELLLMQQLKYHLTVHNPYRPV 187
VT +++A K EE I F + + I E+ +++ L + L P
Sbjct: 85 VTAMFIASKYEEMYPPEIGDFA-FVTDNTYTKHQI-RQMEMKILRALNFGLGRPLPLH-- 140
Query: 188 EGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLL------FSPSQIALAAVL 237
FL ++ +L + +L F PSQIA A
Sbjct: 141 --FLRRASKIGEVDVEQHTLA--------KYLMELTMLDYDMVHFPPSQIAAGAFS 186
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB;
retinoblastoma protein, E2F displacement, transcription
repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3
PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B
1o9k_B
Length = 347
Score = 37.0 bits (85), Expect = 0.007
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Query: 56 EHRAELTDEEASEHFLSASEERVLVRHYQLQLRDFCKRFSPPMPKVV--IGTAFHYLKRF 113
+ + D E LS ++V R L+L C+R P++ I T F + +
Sbjct: 192 DLIKQSKDREGKSTSLSLFYKKVY-RLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQN 250
Query: 114 YLNNSVMDYHPKEILVTCVYLACKVEEFNLSISQFVSNIKGDQQKASDI 162
+ D H +I++ +Y CKV+ +L V+ K +
Sbjct: 251 EYE-LMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQET 298
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor
protein, phosphorylation, cell; HET: TPO; 2.70A {Homo
sapiens}
Length = 656
Score = 34.7 bits (79), Expect = 0.039
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 85 LQLRDFCKRFSPPMPKVV--IGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFN 142
L+L C+R P++ I T F + + + D H +I++ +Y CKV+ +
Sbjct: 529 LRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYE-LMRDRHLDQIMMCSMYGICKVKNID 587
Query: 143 LSISQFVSNIKGDQQKASDI 162
L V+ K +
Sbjct: 588 LKFKIIVTAYKDLPHAVQET 607
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor,
cell cycle; 1.98A {Homo sapiens}
Length = 411
Score = 34.0 bits (77), Expect = 0.067
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 85 LQLRDFCKRFSPPMPKVV--IGTAFHYLKRFYLNNSVMDYHPKEILVTCVYLACKVEEFN 142
L+L C+R P++ I T F + + + D H +I++ +Y CKV+ +
Sbjct: 284 LRLNTLCERLLSEHPELEHIIWTLFQHTLQNEYE-LMRDRHLDQIMMCSMYGICKVKNID 342
Query: 143 LSISQFVSNIKGDQQKASDI 162
L V+ K +
Sbjct: 343 LKFKIIVTAYKDLPHAVQET 362
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
DNA-binding, DNA- directed RNA polymerase, isopeptide
bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Length = 345
Score = 32.6 bits (73), Expect = 0.15
Identities = 26/191 (13%), Positives = 64/191 (33%), Gaps = 9/191 (4%)
Query: 74 SEERVLVRHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVTCVY 133
++ + + ++ C +PK+V A K + ++ + I+ +
Sbjct: 121 KKDNEV-QAAFAKITMLCDAAE--LPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASIL 177
Query: 134 LACKVEEFNLSISQF--VSNIKGDQQKASDIILNNELLLMQQLKYHLTVHNPYRPVEGFL 191
+ C+ E + + + ++K + + I+ N L + + + +
Sbjct: 178 IGCRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLT 237
Query: 192 IDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLFSPSQIALAAVLQSASKLQENLDAYV 251
+ S L P ++ + K SP IA+ ++ + Q +
Sbjct: 238 YIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIP----I 293
Query: 252 TQTLLGQHANV 262
T +GQ V
Sbjct: 294 TAAKVGQTLQV 304
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.87
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 5/23 (21%)
Query: 287 REMFKQLEKRLEKCRNQANNPDS 309
++ K+L+ L+ A DS
Sbjct: 19 KQALKKLQASLKL---YA--DDS 36
Score = 27.6 bits (60), Expect = 3.8
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 238 QSASKLQENLDAYVTQT--LLGQHANV 262
Q+ KLQ +L Y + L A +
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATM 46
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ALS collaborative
crystallography; HET: GOL; 1.25A {Mycobacterium
smegmatis} PDB: 3ng3_A
Length = 231
Score = 29.9 bits (68), Expect = 0.92
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 38 VEAELIALREAANQNF---ILEHRAELTDEEASEHFLSASE 75
V A++ A+R+A I+E A L +
Sbjct: 114 VSADITAVRKAVRAATLKVIVE-SAALLEFSGEPLLADVCR 153
>1uvq_A HLA class II histocompatibility antigen; immunology, MHC class II,
diabetes, narcolepsy, autoimmune disease, structural
proteomics in europe, spine, structural genomics; HET:
NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 3pl6_A* 4d8p_A 1s9v_A 2nna_A 1jk8_A*
Length = 197
Score = 29.0 bits (65), Expect = 1.8
Identities = 6/50 (12%), Positives = 12/50 (24%)
Query: 81 RHYQLQLRDFCKRFSPPMPKVVIGTAFHYLKRFYLNNSVMDYHPKEILVT 130
+ P V + + L V + P + +T
Sbjct: 74 NIMIKRYNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNIT 123
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L
MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A
3v0t_A* 3uyi_A*
Length = 337
Score = 28.3 bits (63), Expect = 3.5
Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 37/122 (30%)
Query: 183 PYRPV-EGFLIDIKTRSQLRDPDRLRPGIDEFLDKMFLTDACLLF-----------SPSQ 230
PY P+ G + L + + F+ + + + + +P Q
Sbjct: 203 PYSPIGRGLFWGKAIKESLPENS-VLTSHPRFVGENLEKNKQIYYRIEALSQKHGCTPVQ 261
Query: 231 IALAAVLQ------------SASKLQENLDAYVTQTLLGQHANVRLVDLIEAVRKIRTLV 278
+ALA VL L N+ A V L E +++I V
Sbjct: 262 LALAWVLHQGEDVVPIPGTTKIKNLHNNVGA----------LKVXLTK--EDLKEISDAV 309
Query: 279 SK 280
Sbjct: 310 PL 311
>1dcu_A Fructose-1,6-bisphosphatase; chloroplast, photosynthesis, redox
regulation, thioredoxin, allostery, hydrolase; 2.20A
{Pisum sativum} SCOP: e.7.1.1 PDB: 1d9q_A 1dbz_A 1spi_A
Length = 357
Score = 27.8 bits (62), Expect = 5.5
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 22/78 (28%)
Query: 110 LKRFYLNNSVMDYHPKEI--LVTCVYLACKVEEFNLSISQFVS--------------NIK 153
L + L E+ +++ + +ACK I+ V NI+
Sbjct: 21 LTSWLLQQEQKGIIDAELTIVLSSISMACK------QIASLVQRANISNLTGTQGAVNIQ 74
Query: 154 GDQQKASDIILNNELLLM 171
G+ QK D+I N
Sbjct: 75 GEDQKKLDVISNEVFSNC 92
>2fhy_A Fructose-1,6-bisphosphatase 1; allosteric inhibitors human fbpase,
benzoxazole, intersubunit allosteric inhibition of human
fpbase, hydrolase; HET: A37; 2.95A {Homo sapiens}
Length = 374
Score = 27.7 bits (62), Expect = 6.0
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 22/76 (28%)
Query: 110 LKRFYLNNSVMDYHPKEI--LVTCVYLACKVEEFNLSISQFVS--------------NIK 153
L RF + E+ L+ + A K +IS V N+
Sbjct: 50 LTRFVMEEGRKARGTGELTQLLNSLCTAVK------AISSAVRKAGIAHLYGIAGSTNVT 103
Query: 154 GDQQKASDIILNNELL 169
GDQ K D++ N+ ++
Sbjct: 104 GDQVKKLDVLSNDLVM 119
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 7.6
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 13/65 (20%)
Query: 263 RLVDLIEAVRK----IRTLVSKPIESPSREMFKQLEKRLEKCRNQANNPDSHIYKERMLE 318
RL +L A + R K +E E ++ +++EK N+ NN + + +
Sbjct: 97 RLQELDAASKVMEQEWREKAKKDLE----EWNQRQSEQVEK--NKINNRIA---DKAFYQ 147
Query: 319 SLNDD 323
+ D
Sbjct: 148 QPDAD 152
>3uks_A Sedoheptulose-1,7 bisphosphatase, putative; structural genomics,
center for structural genomics of infec diseases, csgid;
1.85A {Toxoplasma gondii}
Length = 347
Score = 27.2 bits (61), Expect = 7.7
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 18/64 (28%)
Query: 128 LVTCVYLACKVEEFNLSISQFV----------SNIKGDQQKASDIILNNELLLMQQLKYH 177
L+ + C I+ + N GD+Q D+I N LL +
Sbjct: 43 LILAILDRCG------KIASALQGTSVDKVGSVNEFGDEQLTVDVIAEN--LLRSWAQSS 94
Query: 178 LTVH 181
Sbjct: 95 EGSA 98
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto
reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A
{Bacillus subtilis} SCOP: c.1.7.1
Length = 333
Score = 27.1 bits (61), Expect = 9.1
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 24/71 (33%)
Query: 227 SPSQIALAAVLQ------------SASKLQENLDAYVTQTLLGQHANVRLVDLIEAVRKI 274
S +A+ +L +L+ + L E + I
Sbjct: 259 SVIHLAVRWILDQPGADIALWGARKPGQLEALSEI----------TGWTLNS--EDQKDI 306
Query: 275 RTLVSKPIESP 285
T++ I P
Sbjct: 307 NTILENTISDP 317
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.384
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,312,624
Number of extensions: 317925
Number of successful extensions: 841
Number of sequences better than 10.0: 1
Number of HSP's gapped: 791
Number of HSP's successfully gapped: 49
Length of query: 352
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 257
Effective length of database: 4,049,298
Effective search space: 1040669586
Effective search space used: 1040669586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)