Query psy7373
Match_columns 95
No_of_seqs 106 out of 392
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 16:36:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3586|consensus 100.0 3E-43 6.5E-48 265.3 7.3 93 2-95 163-255 (437)
2 cd00182 TBOX T-box DNA binding 100.0 9E-42 1.9E-46 239.2 7.0 88 2-95 83-170 (188)
3 smart00425 TBOX Domain first f 100.0 6.8E-40 1.5E-44 230.1 7.9 88 2-95 82-171 (190)
4 KOG3585|consensus 100.0 1.1E-36 2.4E-41 228.2 8.2 88 2-95 106-194 (328)
5 PF00907 T-box: T-box; InterP 100.0 9.8E-36 2.1E-40 207.1 5.7 89 2-95 81-169 (184)
6 cd08664 APC10-HERC2 APC10-like 73.7 13 0.00028 25.5 5.3 47 1-58 48-98 (152)
7 cd08666 APC10-HECTD3 APC10-lik 65.6 23 0.0005 23.8 5.1 46 1-57 30-79 (134)
8 cd08365 APC10-like1 APC10-like 61.8 25 0.00054 23.4 4.7 47 1-58 26-76 (131)
9 cd08667 APC10-ZZEF1 APC10/DOC1 46.6 37 0.00079 22.7 3.6 47 1-58 25-75 (131)
10 cd08159 APC10-like APC10-like 44.6 57 0.0012 21.6 4.3 47 1-58 25-75 (129)
11 cd08665 APC10-CUL7 APC10-like 44.3 53 0.0011 21.9 4.1 48 1-59 25-76 (131)
12 PF07597 DUF1560: Protein of u 36.1 17 0.00036 19.8 0.6 18 3-20 5-22 (49)
13 PTZ00065 60S ribosomal protein 27.5 22 0.00047 23.8 0.2 23 7-31 40-63 (130)
14 KOG0122|consensus 23.6 56 0.0012 24.4 1.7 46 9-55 177-222 (270)
No 1
>KOG3586|consensus
Probab=100.00 E-value=3e-43 Score=265.30 Aligned_cols=93 Identities=54% Similarity=0.847 Sum_probs=82.2
Q ss_pred ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCcE
Q psy7373 2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESI 81 (95)
Q Consensus 2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT~ 81 (95)
+|+|||||++|+.||++.|||||+|||||++|++|||+|||||||+||+||++.+....... ..+..+.+++|+||||+
T Consensus 163 ~yvHPDSP~sGe~wmkqiVSFdK~KLTNNelD~nGHIILNSMHkYQPRvHvV~~~~~~~s~~-~~~~~e~~kTF~FpET~ 241 (437)
T KOG3586|consen 163 VYVHPDSPASGEQWMKQIVSFDKLKLTNNELDDNGHIILNSMHKYQPRVHVVYLDPGNDSNK-YVEKNEGFKTFVFPETV 241 (437)
T ss_pred eeeCCCCCCCHHHHHHhhhchheeeccccccccCCcEeeecccccCCceEEEEecCCCCccc-cccccccceeEecccee
Confidence 69999999999999999999999999999999999999999999999999999886532111 02234678999999999
Q ss_pred EEEcCCCcCcccCC
Q psy7373 82 FTAVTAYQNQLIFA 95 (95)
Q Consensus 82 FiaVTaYqN~~It~ 95 (95)
|+|||||||++||+
T Consensus 242 FtAVTAYQNq~ITk 255 (437)
T KOG3586|consen 242 FTAVTAYQNQRITK 255 (437)
T ss_pred EEEEeecccceeee
Confidence 99999999999995
No 2
>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.
Probab=100.00 E-value=9e-42 Score=239.24 Aligned_cols=88 Identities=53% Similarity=0.805 Sum_probs=80.0
Q ss_pred ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCcE
Q psy7373 2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESI 81 (95)
Q Consensus 2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT~ 81 (95)
+|+|||||++|++||+++|+|+||||||+..++.++|.|+|||||+|||||+++++... .....+++|+||||+
T Consensus 83 ~~~HPdsp~tG~~wM~~~isF~kvKlTN~~~~~~~~i~L~SmhKY~Prl~I~~~~~~~~------~~~~~~~~f~F~eT~ 156 (188)
T cd00182 83 VYVHPDSPATGAHWMKQPVSFDKLKLTNNTLDNNGHIILNSMHKYQPRLHIVEVDDSSP------FSWRLVQTFSFPETE 156 (188)
T ss_pred eEECCCCCcCHHHHhhCccccchhhcccCCCCCCCEEEEeccceEEeEEEEEEcCCCcc------ccccccEEEECCCeE
Confidence 68999999999999999999999999999999999999999999999999999877532 123457999999999
Q ss_pred EEEcCCCcCcccCC
Q psy7373 82 FTAVTAYQNQLIFA 95 (95)
Q Consensus 82 FiaVTaYqN~~It~ 95 (95)
|||||||||++||.
T Consensus 157 FiAVTaYqN~~It~ 170 (188)
T cd00182 157 FIAVTAYQNQEITQ 170 (188)
T ss_pred EEEEEeecCHhHhh
Confidence 99999999999984
No 3
>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein.
Probab=100.00 E-value=6.8e-40 Score=230.10 Aligned_cols=88 Identities=57% Similarity=0.865 Sum_probs=79.1
Q ss_pred ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcE--EEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccC
Q psy7373 2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHL--VLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPE 79 (95)
Q Consensus 2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i--~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~e 79 (95)
+|+|||||++|++||+++|+|+||||||+..+.+|+| .|+|||||+|||||+++++.... ..+.+.+|+|||
T Consensus 82 ~~~Hpdsp~tG~~wM~~~v~F~kvKlTN~~~~~~~~i~i~L~SmhkY~P~l~I~~~~~~~~~------~~~~~~~f~F~e 155 (190)
T smart00425 82 VYVHPDSPATGAHWMKQPVSFDKVKLTNNQSDKNGHLQIILNSMHKYQPRLHIVEVDDISKE------ILSQFKTFVFPE 155 (190)
T ss_pred eEECCCCccCHHHHhhCcccccccceeccccccCCcEeeeeccCceEeeEEEEEEeCCcccc------cccceeEEECCc
Confidence 6899999999999999999999999999999999997 99999999999999998774321 124568999999
Q ss_pred cEEEEcCCCcCcccCC
Q psy7373 80 SIFTAVTAYQNQLIFA 95 (95)
Q Consensus 80 T~FiaVTaYqN~~It~ 95 (95)
|+|||||||||++||.
T Consensus 156 T~FiaVTaYqN~~it~ 171 (190)
T smart00425 156 TQFIAVTAYQNQKITK 171 (190)
T ss_pred eEEEEEeeecccchhh
Confidence 9999999999999984
No 4
>KOG3585|consensus
Probab=100.00 E-value=1.1e-36 Score=228.22 Aligned_cols=88 Identities=49% Similarity=0.730 Sum_probs=79.3
Q ss_pred ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCc-EEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCc
Q psy7373 2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGH-LVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPES 80 (95)
Q Consensus 2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~-i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT 80 (95)
+|+|||||++|++||+++|+|+||||||++.+.+++ |.|+|||||+|||||+++++... .....+.+|+|+||
T Consensus 106 ~~~Hpd~p~TG~~WM~~~V~F~kvKITN~~~~~~~~~i~l~SmHKY~P~l~i~~~~~~~~------~~~~~~~~~~F~eT 179 (328)
T KOG3585|consen 106 VYVHPDGPATGAHWMSEPVSFDKVKITNNKSDKKGKVIILNSMHKYQPVLHIVELDASLI------SPEISVQSFKFPET 179 (328)
T ss_pred EEEecCCccchHHHhcCCcccceeEeeccccccCCceEeeecccceeeeEEEEEcccccC------CCccceeEEEcccc
Confidence 689999999999999999999999999999999999 99999999999999999973221 12346899999999
Q ss_pred EEEEcCCCcCcccCC
Q psy7373 81 IFTAVTAYQNQLIFA 95 (95)
Q Consensus 81 ~FiaVTaYqN~~It~ 95 (95)
+|||||||||++||.
T Consensus 180 ~FIaVTaYQn~~it~ 194 (328)
T KOG3585|consen 180 QFIAVTAYQNQEITK 194 (328)
T ss_pred eeEEeeeeecceehh
Confidence 999999999999984
No 5
>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []. The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.
Probab=100.00 E-value=9.8e-36 Score=207.11 Aligned_cols=89 Identities=46% Similarity=0.698 Sum_probs=68.2
Q ss_pred ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCcE
Q psy7373 2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESI 81 (95)
Q Consensus 2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT~ 81 (95)
.++|||||++|+.||+++|+|+++||||+..++.++|.|+|||||+|+|+|++++++.... ....+.+|+||||+
T Consensus 81 ~~~h~~~~~~G~~WM~~~v~F~~vkitn~~~~~~~~I~L~s~hkY~Pvl~I~~~~~~~~~~-----~~~~~~~f~f~~t~ 155 (184)
T PF00907_consen 81 VVIHPDGPQTGSEWMKNGVSFDKVKITNNKEDKKGNIFLNSMHKYQPVLHIYEVNSNGSPS-----PNQPVHEFSFPETE 155 (184)
T ss_dssp -EE-TT-SEEHHHHHHS-EEETT-EEESSTT-TST-EE--TTEEEEEEEEEEECTTTSCCC-----SCSSEEEEE-GGG-
T ss_pred EEEEecCcCCHHHhCcccEEeehhhhhCCCCCcccceEEccccEEEEEEEEEEcCCccccc-----cccceEEeecCcCe
Confidence 5899999999999999999999999999998888889999999999999999998853210 13468999999999
Q ss_pred EEEcCCCcCcccCC
Q psy7373 82 FTAVTAYQNQLIFA 95 (95)
Q Consensus 82 FiaVTaYqN~~It~ 95 (95)
|||||+|||++|++
T Consensus 156 FIaVT~Yqn~~I~~ 169 (184)
T PF00907_consen 156 FIAVTAYQNEEIRQ 169 (184)
T ss_dssp EEEESS-SSHHHHH
T ss_pred EEeecccchhhhhh
Confidence 99999999999973
No 6
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=73.68 E-value=13 Score=25.55 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=34.4
Q ss_pred CceecCCCCCchHHHhc----CCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCC
Q psy7373 1 STVLYPDSPFTGDQLRK----QVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHES 58 (95)
Q Consensus 1 ~~~~Hpdsp~~G~~WM~----~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~ 58 (95)
++||+-||+ .|.||.+ ..+.-..|.|+-...| .-|.|..-.++.++.
T Consensus 48 ~TYWQSdG~-q~~HwI~l~~~~~v~I~~L~i~vd~~D----------eSY~Ps~I~V~~G~~ 98 (152)
T cd08664 48 GSYWQSSGS-QGKHWIRLELHPDVLIHSLKIIVDPAD----------SSYMPSLVVVSGGDS 98 (152)
T ss_pred CCeeccCCC-CCceEEEEEECCCcEEEEEEEEecCCC----------CCcCCceEEEEecCC
Confidence 478988886 6778854 5666667777776544 378888888888775
No 7
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=65.64 E-value=23 Score=23.75 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=32.2
Q ss_pred CceecCCCCCchHHHhc----CCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCC
Q psy7373 1 STVLYPDSPFTGDQLRK----QVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHE 57 (95)
Q Consensus 1 ~~~~Hpdsp~~G~~WM~----~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~ 57 (95)
++||+-||+ .|.||.+ ..+.-..|.|+.+.. -.-|.|..-.++.++
T Consensus 30 ~tyWQSdG~-qgpH~I~l~f~~~v~i~~l~i~v~~~----------DeSYtP~~I~V~~G~ 79 (134)
T cd08666 30 DTYWESDGS-QGQHWIRLHMKKGTIIKKLLLTVDAT----------DDNYMPKRVAVYGGE 79 (134)
T ss_pred CccEecCCC-CCCeEEEEEECCCcEeeEEEEEecCC----------CCCcCCcEEEEEecC
Confidence 479999987 6788854 556666777777643 356777777777666
No 8
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=61.76 E-value=25 Score=23.44 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=32.8
Q ss_pred CceecCCCCCchHHHhc----CCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCC
Q psy7373 1 STVLYPDSPFTGDQLRK----QVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHES 58 (95)
Q Consensus 1 ~~~~Hpdsp~~G~~WM~----~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~ 58 (95)
++||+-||+ .|.||.+ ..+.-..|.|+-...| .-|.|..-.+++|++
T Consensus 26 ~tyWQSDG~-q~pH~I~i~f~k~v~i~~l~l~vd~~D----------eSYtP~~I~V~~G~~ 76 (131)
T cd08365 26 STYWQSDGS-QGSHWIRLKMKPDVLVRHLSLAVDATD----------SSYMPQRVVVAGGRS 76 (131)
T ss_pred CceEccCCC-CCCEEEEEEEcCCcEEEEEEEEecCCC----------CCCCCcEEEEEecCC
Confidence 469999988 5677754 4555666777765433 378888888887775
No 9
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=46.55 E-value=37 Score=22.65 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=30.8
Q ss_pred CceecCCCCCchHHHhc----CCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCC
Q psy7373 1 STVLYPDSPFTGDQLRK----QVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHES 58 (95)
Q Consensus 1 ~~~~Hpdsp~~G~~WM~----~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~ 58 (95)
++||+-||+ .|.||.+ ..+.-..|.|+-...| .-|.|.+-.++++..
T Consensus 25 ~TYWQSDG~-q~pH~I~i~f~~~v~i~~l~i~v~~~D----------eSYtPs~I~I~~G~~ 75 (131)
T cd08667 25 STYWQSDGS-ARSHWIRLKMKPDVVLRHLSIAVAATD----------QSYMPQQVTVSVGRS 75 (131)
T ss_pred CccCccCCC-CCCeEEEEEecCCeEEEEEEEEEcCCC----------CCcCCcEEEEEecCC
Confidence 468988887 4567753 4455556666665333 368888877777664
No 10
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=44.64 E-value=57 Score=21.61 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=31.5
Q ss_pred CceecCCCCCchHHHh----cCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCC
Q psy7373 1 STVLYPDSPFTGDQLR----KQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHES 58 (95)
Q Consensus 1 ~~~~Hpdsp~~G~~WM----~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~ 58 (95)
++||.-||++ |.+|. ...+.-..|.|+-+..| .-|.|..-.+++|++
T Consensus 25 ~tyWQSdG~q-phh~i~l~f~k~v~i~~l~i~~~~~D----------eSYtP~~I~V~~G~~ 75 (129)
T cd08159 25 DTYWQSDGSQ-GSHWIRLFMKKDVLIRVLAIFVDMAD----------SSYMPSLVVVYGGHS 75 (129)
T ss_pred CccCCCCCCC-CCEEEEEEEcCCcEEEEEEEEecCCC----------CCcCCcEEEEEecCC
Confidence 4688888874 66774 34555666666655422 568888888887775
No 11
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=44.30 E-value=53 Score=21.93 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=30.6
Q ss_pred CceecCCCCCchHHHhc----CCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCCC
Q psy7373 1 STVLYPDSPFTGDQLRK----QVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHEST 59 (95)
Q Consensus 1 ~~~~Hpdsp~~G~~WM~----~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~~ 59 (95)
++||.-||+ .|.||.+ ..+.-..|.|+-...| .-|.|..-.+++++..
T Consensus 25 ~tyWQSdG~-q~pH~I~i~f~k~v~I~~l~i~v~~~D----------eSYtPs~I~V~~G~~~ 76 (131)
T cd08665 25 KTYWESNGS-TGSHYINIHMHRGVVIRQLYMLVASED----------SSYMPARVVVLGGDSP 76 (131)
T ss_pred CceEccCCC-CCCeEEEEEECCCcEEEEEEEEecCCC----------CCcCCeeEEEEecCCH
Confidence 368988887 6778865 3444445555554322 4688888888777753
No 12
>PF07597 DUF1560: Protein of unknown function (DUF1560); InterPro: IPR011454 This is a small family of short hypothetical proteins in Rhodopirellula baltica.
Probab=36.07 E-value=17 Score=19.81 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=15.4
Q ss_pred eecCCCCCchHHHhcCCc
Q psy7373 3 VLYPDSPFTGDQLRKQVV 20 (95)
Q Consensus 3 ~~Hpdsp~~G~~WM~~~v 20 (95)
+.||.+++.++.|-.+..
T Consensus 5 ~l~p~~~~~~~rwecrrf 22 (49)
T PF07597_consen 5 FLHPTSFAKRSRWECRRF 22 (49)
T ss_pred ccccCccCCcchhhhhhh
Confidence 679999999999988743
No 13
>PTZ00065 60S ribosomal protein L14; Provisional
Probab=27.47 E-value=22 Score=23.81 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=18.7
Q ss_pred CCC-CchHHHhcCCcceeeEEeeeCC
Q psy7373 7 DSP-FTGDQLRKQVVSFEKVKLTNNE 31 (95)
Q Consensus 7 dsp-~~G~~WM~~~vsF~klKlTNn~ 31 (95)
||| .+|-. ++.++|.+|.||.-.
T Consensus 40 DGP~~tgV~--Rq~i~~k~l~LT~~~ 63 (130)
T PTZ00065 40 DGAFITGVK--RQSIPLKRLKLTDEK 63 (130)
T ss_pred eCCCcCCcc--eeEEeccceEEccEE
Confidence 889 77744 788999999999843
No 14
>KOG0122|consensus
Probab=23.65 E-value=56 Score=24.40 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=31.4
Q ss_pred CCchHHHhcCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEc
Q psy7373 9 PFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKR 55 (95)
Q Consensus 9 p~~G~~WM~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~ 55 (95)
.+.| .||+..=.=.-|||||-.+|-.+.=...-+|++-|+..++-+
T Consensus 177 ~~~g-~~~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvyla 222 (270)
T KOG0122|consen 177 RASG-SDMRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLA 222 (270)
T ss_pred cccc-cccccCCccceeEEecCccccChhHHHHHhhccCccceeEEE
Confidence 6667 899987777789999976654432235556777666655544
Done!