Query psy7373
Match_columns 95
No_of_seqs 106 out of 392
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 16:36:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x6u_A T-box transcription fac 100.0 1.4E-43 4.9E-48 249.8 5.5 90 2-95 87-176 (203)
2 1h6f_A T-box transcription fac 100.0 9.6E-44 3.3E-48 249.1 4.5 88 2-95 86-173 (193)
3 4a04_A T-box transcription fac 100.0 7.6E-43 2.6E-47 246.1 5.7 91 2-95 99-189 (203)
4 1xbr_A Protein (T protein); co 100.0 2.9E-42 1E-46 240.1 6.0 83 2-95 83-165 (184)
5 3ckl_A Sulfotransferase family 19.6 15 0.00051 25.7 -1.0 14 8-21 48-61 (298)
6 2ov8_A STAL; sulfotransferase, 19.4 15 0.00052 25.7 -1.0 14 8-21 28-41 (288)
7 2zpt_X Tyrosine-ester sulfotra 19.4 15 0.00052 25.6 -1.0 14 8-21 46-59 (295)
8 2gwh_A Sulfotransferase 1C2; s 19.3 15 0.00052 25.7 -1.0 14 8-21 49-62 (298)
9 2reo_A Putative sulfotransfera 18.7 16 0.00055 25.7 -1.0 14 8-21 55-68 (305)
10 1ls6_A ARYL sulfotransferase; 18.4 16 0.00056 25.4 -1.0 14 8-21 46-59 (295)
No 1
>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*
Probab=100.00 E-value=1.4e-43 Score=249.81 Aligned_cols=90 Identities=49% Similarity=0.783 Sum_probs=80.1
Q ss_pred ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCcE
Q psy7373 2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESI 81 (95)
Q Consensus 2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT~ 81 (95)
+|+|||||++|++||+++|+|+|||||||..|..|+|.|+|||||+|||||+++++... .+ .....+++|+||||+
T Consensus 87 ~y~Hpdsp~tG~~WM~~~VsF~klKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~~~~~-~~---~~~~~~~tf~FpeT~ 162 (203)
T 2x6u_A 87 LYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNG-FG---SKNTAFCTHVFPETA 162 (203)
T ss_dssp CEECTTCSEEHHHHHHSCEECTTCEEECCTTCSSCCEECCTTEEEEEEEEEEECCTTSC-SS---SSCCCEEEECCGGGC
T ss_pred eEECCCCccchHHHhhCCceeeeeeceeccCCccceEeecCCceEEEEEEEEEeCCccc-cC---cCccceEEEEcCCcE
Confidence 68999999999999999999999999999999999999999999999999999876421 11 123468999999999
Q ss_pred EEEcCCCcCcccCC
Q psy7373 82 FTAVTAYQNQLIFA 95 (95)
Q Consensus 82 FiaVTaYqN~~It~ 95 (95)
|||||||||++||+
T Consensus 163 FiAVTaYQN~~It~ 176 (203)
T 2x6u_A 163 FIAVTSYQNHKITQ 176 (203)
T ss_dssp EEEESSCCSHHHHH
T ss_pred EEEEeeecchhhhh
Confidence 99999999999973
No 2
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Probab=100.00 E-value=9.6e-44 Score=249.10 Aligned_cols=88 Identities=51% Similarity=0.825 Sum_probs=79.8
Q ss_pred ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCcE
Q psy7373 2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESI 81 (95)
Q Consensus 2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT~ 81 (95)
+|+|||||++|++||+++|+|+|||||||..+++|+|.|+|||||+|||||+++++.. .++.+.+++|+||||+
T Consensus 86 ~~~Hpdsp~tG~~WM~~~VsF~klKLTNn~~~~~~~i~L~SmHKY~PrlhI~~~~~~~------~~~~~~~~tf~FpeT~ 159 (193)
T 1h6f_A 86 MYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDIL------KLPYSTFRTYLFPETE 159 (193)
T ss_dssp CEECTTCSEEHHHHTTSCEECTTCCEECCTTCCSCCEECCTTEEEEEEEEEECCSCGG------GGGGSCCEEEECGGGC
T ss_pred eEecCCCcccHHHHhhCCcceeeeeeeccCCCCCCcEEecCCceEeeEEEEEEcCCcc------CCCCcceEEEECCCeE
Confidence 6899999999999999999999999999999999999999999999999999987632 1233568999999999
Q ss_pred EEEcCCCcCcccCC
Q psy7373 82 FTAVTAYQNQLIFA 95 (95)
Q Consensus 82 FiaVTaYqN~~It~ 95 (95)
|||||||||++||+
T Consensus 160 FiAVTaYQN~~It~ 173 (193)
T 1h6f_A 160 FIAVTAYQNDKITQ 173 (193)
T ss_dssp EEEESSCSCHHHHH
T ss_pred EEEEeccCchhhhh
Confidence 99999999999973
No 3
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}
Probab=100.00 E-value=7.6e-43 Score=246.15 Aligned_cols=91 Identities=51% Similarity=0.779 Sum_probs=78.8
Q ss_pred ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCcE
Q psy7373 2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESI 81 (95)
Q Consensus 2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT~ 81 (95)
+|+|||||++|++||+++|+|+|||||||..+++|+|.|+|||||+|||||+++++.+.. ..++.+.+++|+||||+
T Consensus 99 ~~~Hpdsp~tG~~WM~~~VsF~klKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~~~~~~---~~~~~~~~~tf~FpeT~ 175 (203)
T 4a04_A 99 VHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYVDPRKDS---EKYAEENFKTFVFEETR 175 (203)
T ss_dssp CCBCTTCSEEHHHHHHSCEEECSCEEECCTTCCSSCEECCTTCEEEEEEEEEECCCC-----------CCEEEEECGGGC
T ss_pred eEEcCCCCcCHHHHhhCcceeeeeecccCccCcCCEEEEeeccccccEEEEEEcCCCccc---ccccCCceEEEECCCcE
Confidence 689999999999999999999999999999999999999999999999999998764211 12334568999999999
Q ss_pred EEEcCCCcCcccCC
Q psy7373 82 FTAVTAYQNQLIFA 95 (95)
Q Consensus 82 FiaVTaYqN~~It~ 95 (95)
|||||||||++||+
T Consensus 176 FiAVTaYQN~~It~ 189 (203)
T 4a04_A 176 FTAVTAYQNHRITQ 189 (203)
T ss_dssp EEEESSCCCHHHHH
T ss_pred EEeeCccCCHHHHH
Confidence 99999999999984
No 4
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4
Probab=100.00 E-value=2.9e-42 Score=240.07 Aligned_cols=83 Identities=47% Similarity=0.703 Sum_probs=75.9
Q ss_pred ceecCCCCCchHHHhcCCcceeeEEeeeCCCCCCCcEEEccCCccccEEEEEEcCCCCCCCcccccCCCceEEEEccCcE
Q psy7373 2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEYKTFIYPESI 81 (95)
Q Consensus 2 ~~~Hpdsp~~G~~WM~~~vsF~klKlTNn~~~~~~~i~L~s~hkY~P~l~I~~~~~~~~~~~~~~~~~~~~~~f~f~eT~ 81 (95)
.|+|||||++|++||+++|+|+|||||||. +..|+|.|+|||||+|||||+++++. ...+++|+||||+
T Consensus 83 ~~~Hpdsp~~G~~WM~~~VsF~klKlTNn~-~~~~~i~L~SmHKY~PrlhI~~~~~~----------~~~~~tf~FpeT~ 151 (184)
T 1xbr_A 83 VYIHPDSPNFGAHWMKDPVSFSKVKLTNKM-NGGGQIMLNSLHKYEPRIHIVRVGGT----------QRMITSHSFPETQ 151 (184)
T ss_dssp CEECTTCSEEHHHHHHSCEECTTCEEESSC-CTTTCEECCSSSEEEEEEEEEEESSS----------SCCEEEEECGGGC
T ss_pred eEECCCCchhHHHHhhCCceeccccccccC-CCCCeEEeccCceEEEEEEEEEeCCC----------cceEEEEECCCcE
Confidence 689999999999999999999999999995 66789999999999999999998763 1347899999999
Q ss_pred EEEcCCCcCcccCC
Q psy7373 82 FTAVTAYQNQLIFA 95 (95)
Q Consensus 82 FiaVTaYqN~~It~ 95 (95)
|||||||||++||+
T Consensus 152 FiAVTaYQN~~It~ 165 (184)
T 1xbr_A 152 FIAVTAYQNEEITA 165 (184)
T ss_dssp EEEESSCCCHHHHH
T ss_pred EEEEeccCChhHhh
Confidence 99999999999973
No 5
>3ckl_A Sulfotransferase family cytosolic 1B member 1; SULT1B1, human cytosolic sulfotransferase, resveratrol, SGC, cytoplasm, lipid metabolism; HET: STL A3P; 2.00A {Homo sapiens} PDB: 2z5f_A*
Probab=19.59 E-value=15 Score=25.72 Aligned_cols=14 Identities=14% Similarity=0.389 Sum_probs=11.9
Q ss_pred CCCchHHHhcCCcc
Q psy7373 8 SPFTGDQLRKQVVS 21 (95)
Q Consensus 8 sp~~G~~WM~~~vs 21 (95)
=|++|..||++.+.
T Consensus 48 ~PKSGTTwl~~il~ 61 (298)
T 3ckl_A 48 YPKSGTTWVSEIID 61 (298)
T ss_dssp STTSSHHHHHHHHH
T ss_pred CCCCchHHHHHHHH
Confidence 38899999998766
No 6
>2ov8_A STAL; sulfotransferase, structural genomics, montr kingston bacterial structural genomics initiative, BSGI, UN function; 2.58A {Streptomyces toyocaensis} PDB: 2ovb_A 2ovf_A*
Probab=19.42 E-value=15 Score=25.69 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=11.6
Q ss_pred CCCchHHHhcCCcc
Q psy7373 8 SPFTGDQLRKQVVS 21 (95)
Q Consensus 8 sp~~G~~WM~~~vs 21 (95)
-|++|..||++.+.
T Consensus 28 ~PKSGTTWl~~il~ 41 (288)
T 2ov8_A 28 YPKAGGHWLRCMLT 41 (288)
T ss_dssp CTTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 48999999998664
No 7
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine, sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB: 2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Probab=19.38 E-value=15 Score=25.64 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=11.8
Q ss_pred CCCchHHHhcCCcc
Q psy7373 8 SPFTGDQLRKQVVS 21 (95)
Q Consensus 8 sp~~G~~WM~~~vs 21 (95)
-|++|..||++.+.
T Consensus 46 ~PKSGTTWl~~il~ 59 (295)
T 2zpt_X 46 YPKSGTTWVSEILD 59 (295)
T ss_dssp STTSSHHHHHHHHH
T ss_pred cCccchHHHHHHHH
Confidence 48999999998765
No 8
>2gwh_A Sulfotransferase 1C2; sulfate conjugation, pentachlorophenol, PA pesticide, structural genomics, structural genomics consort transferase; HET: A3P PCI; 1.80A {Homo sapiens} PDB: 2ad1_A*
Probab=19.28 E-value=15 Score=25.66 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=12.1
Q ss_pred CCCchHHHhcCCcc
Q psy7373 8 SPFTGDQLRKQVVS 21 (95)
Q Consensus 8 sp~~G~~WM~~~vs 21 (95)
-|++|..||++.+.
T Consensus 49 ~PKSGTTWl~~il~ 62 (298)
T 2gwh_A 49 YPKAGTTWTQEIVE 62 (298)
T ss_dssp STTSSHHHHHHHHH
T ss_pred cCCccHHHHHHHHH
Confidence 48999999999776
No 9
>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural genom consortium, SGC; HET: A3P; 2.65A {Homo sapiens} PDB: 2h8k_A*
Probab=18.68 E-value=16 Score=25.68 Aligned_cols=14 Identities=14% Similarity=0.377 Sum_probs=11.8
Q ss_pred CCCchHHHhcCCcc
Q psy7373 8 SPFTGDQLRKQVVS 21 (95)
Q Consensus 8 sp~~G~~WM~~~vs 21 (95)
=|++|..||++.+.
T Consensus 55 ~PKSGTTWl~~il~ 68 (305)
T 2reo_A 55 YPKSGTTWMHEILD 68 (305)
T ss_dssp CTTSSHHHHHHHHH
T ss_pred cCCchHHHHHHHHH
Confidence 48999999998765
No 10
>1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive cooperativity, two substrate binding sites; HET: A3P NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A* 3u3o_A* 3u3k_A* 3u3m_A* 3u3j_A* 3u3r_A* 1z28_A* 3qvv_A* 3qvu_A* 1z29_A* 1cjm_A 2a3r_A*
Probab=18.37 E-value=16 Score=25.36 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=11.8
Q ss_pred CCCchHHHhcCCcc
Q psy7373 8 SPFTGDQLRKQVVS 21 (95)
Q Consensus 8 sp~~G~~WM~~~vs 21 (95)
-|++|..||++.+.
T Consensus 46 ~PKSGTTwl~~il~ 59 (295)
T 1ls6_A 46 YPKSGTTWVSQILD 59 (295)
T ss_dssp STTSSHHHHHHHHH
T ss_pred CCCCchHHHHHHHH
Confidence 48999999998765
Done!