RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7373
(95 letters)
>2x6u_A T-box transcription factor TBX5; developmental protein,
DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear
protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB:
2x6v_A*
Length = 203
Score = 88.3 bits (218), Expect = 1e-23
Identities = 44/91 (48%), Positives = 62/91 (68%), Gaps = 4/91 (4%)
Query: 3 VLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINH 62
++PDSP TG +Q+VSF+K+KLTNN +D GH++LNSMHKYQPR+H+VK E+
Sbjct: 88 YVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNGFG 147
Query: 63 PITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
+ + T ++PE+ F AVT+YQN I
Sbjct: 148 S----KNTAFCTHVFPETAFIAVTSYQNHKI 174
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box
transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Length = 193
Score = 85.6 bits (211), Expect = 1e-22
Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 6/92 (6%)
Query: 2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTIN 61
++PDSP TG+Q +VV+F K+KLTNN DKHG +LNSMHKYQPR H+V+ ++
Sbjct: 86 MYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRAND---- 141
Query: 62 HPITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
I L ++T+++PE+ F AVTAYQN I
Sbjct: 142 --ILKLPYSTFRTYLFPETEFIAVTAYQNDKI 171
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins;
HET: DNA; 2.58A {Homo sapiens}
Length = 203
Score = 84.9 bits (209), Expect = 2e-22
Identities = 46/91 (50%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 3 VLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINH 62
+PDSP G Q KQ+VSF+K+KLTNN +D +GH++LNSMH+YQPR H+V
Sbjct: 100 HYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYVDP---RK 156
Query: 63 PITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
E +KTF++ E+ FTAVTAYQN I
Sbjct: 157 DSEKYAEENFKTFVFEETRFTAVTAYQNHRI 187
>1xbr_A Protein (T protein); complex (transcription factor/DNA),
transcription factor, DNA-binding protein,
transcription/DNA complex; HET: DNA; 2.50A {Xenopus
laevis} SCOP: b.2.5.4
Length = 184
Score = 72.1 bits (176), Expect = 1e-17
Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 11/92 (11%)
Query: 2 TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTIN 61
++PDSP G K VSF KVKLTN M+ G ++LNS+HKY+PRIH+V+
Sbjct: 83 VYIHPDSPNFGAHWMKDPVSFSKVKLTNK-MNGGGQIMLNSLHKYEPRIHIVR------- 134
Query: 62 HPITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
+ +PE+ F AVTAYQN+ I
Sbjct: 135 ---VGGTQRMITSHSFPETQFIAVTAYQNEEI 163
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.10
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 16/92 (17%)
Query: 6 PDSPFTGDQLRKQVVSFEKVKLTN--NEMDKHGHLVLN----SMHKYQPRI----HL-VK 54
T D+++ ++ + + + E+ L+ S+ H+
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 55 RHESTINHPITDLEAEEYKT-----FIYPESI 81
+ + I + LE EY+ ++P S
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Score = 29.1 bits (64), Expect = 0.22
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 14/70 (20%)
Query: 13 DQLRKQVVSFE----KVKLTNNEMDKHGHL--VLNSMHKYQPRIHLVKRHESTINHPITD 66
R + F K++ + + G + L + Y+P I N P +
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI--------CDNDPKYE 542
Query: 67 LEAEEYKTFI 76
F+
Sbjct: 543 RLVNAILDFL 552
Score = 26.7 bits (58), Expect = 1.3
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 20/98 (20%)
Query: 9 PFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIH-----LVKRHESTINHP 63
F + K V K L+ E+D ++ S L+ + E +
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDH----IIMSKDAVS-GTLRLFWTLLSKQEEMVQKF 82
Query: 64 ITDLEAEEYKTFIY---------PESIFTAVTAYQNQL 92
+ ++ YK F+ P + +++L
Sbjct: 83 VEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRL 119
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.24
Identities = 19/92 (20%), Positives = 27/92 (29%), Gaps = 27/92 (29%)
Query: 15 LRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHE---------STINHPIT 65
L + FE L N++ H + + + + LVK E P
Sbjct: 84 LNLCLTEFENCYLEGNDI----HALAAKLLQ-ENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 66 DLEAEEYKTFIYPES-IFTAVTAYQNQL--IF 94
S +F AV QL IF
Sbjct: 139 K----------KSNSALFRAVGEGNAQLVAIF 160
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex,
trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP:
c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A*
2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Length = 796
Score = 25.9 bits (58), Expect = 2.0
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 1 STVLYP-DSPFTGDQLR-KQ 18
+ VLYP D+ F G +LR Q
Sbjct: 252 TKVLYPNDNAFEGKKLRLMQ 271
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence,
starch degrading, transferase, glycosyltransferase; HET:
PLP; 1.9A {Corynebacterium callunae}
Length = 796
Score = 25.9 bits (58), Expect = 2.1
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 1 STVLYP-DSPFTGDQLR-KQ 18
VLYP D+ + G +LR +Q
Sbjct: 242 CRVLYPNDTTYEGKKLRVRQ 261
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 26.0 bits (58), Expect = 2.4
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 1 STVLYP-DSPFTGDQLR-KQ 18
+ VLYP D+ G +LR KQ
Sbjct: 312 TAVLYPNDNFAQGKELRLKQ 331
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.382
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,372,232
Number of extensions: 66088
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 13
Length of query: 95
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 33
Effective length of database: 4,970,691
Effective search space: 164032803
Effective search space used: 164032803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)