RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7373
         (95 letters)



>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 184

 Score =  106 bits (266), Expect = 2e-31
 Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 6/92 (6%)

Query: 2   TVLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTIN 61
             ++PDSP TG+Q   +VV+F K+KLTNN  DKHG  +LNSMHKYQPR H+V+ ++    
Sbjct: 83  MYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRAND---- 138

Query: 62  HPITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
             I  L    ++T+++PE+ F AVTAYQN  I
Sbjct: 139 --ILKLPYSTFRTYLFPETEFIAVTAYQNDKI 168


>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 184

 Score = 98.0 bits (244), Expect = 5e-28
 Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 11/91 (12%)

Query: 3   VLYPDSPFTGDQLRKQVVSFEKVKLTNNEMDKHGHLVLNSMHKYQPRIHLVKRHESTINH 62
            ++PDSP  G    K  VSF KVKLTN  M+  G ++LNS+HKY+PRIH+V+   +    
Sbjct: 84  YIHPDSPNFGAHWMKDPVSFSKVKLTNK-MNGGGQIMLNSLHKYEPRIHIVRVGGTQ--- 139

Query: 63  PITDLEAEEYKTFIYPESIFTAVTAYQNQLI 93
                      +  +PE+ F AVTAYQN+ I
Sbjct: 140 -------RMITSHSFPETQFIAVTAYQNEEI 163


>d1w36c3 c.52.1.25 (C:818-1121) Exodeoxyribonuclease V beta chain
           (RecC), C-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 304

 Score = 23.4 bits (50), Expect = 5.7
 Identities = 6/36 (16%), Positives = 12/36 (33%)

Query: 37  HLVLNSMHKYQPRIHLVKRHESTINHPITDLEAEEY 72
           HLV  +          +++       P+   +A  Y
Sbjct: 167 HLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHY 202


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 329,358
Number of extensions: 12493
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 8
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)