Query psy7374
Match_columns 106
No_of_seqs 131 out of 360
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 16:37:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3586|consensus 99.5 1.2E-14 2.6E-19 123.3 5.3 34 72-105 77-110 (437)
2 KOG3585|consensus 99.1 6.5E-11 1.4E-15 96.7 3.9 35 72-106 22-56 (328)
3 TIGR01552 phd_fam prevent-host 41.9 24 0.00052 20.7 2.0 23 82-105 12-34 (52)
4 COG3967 DltE Short-chain dehyd 37.7 23 0.0005 29.2 1.8 21 82-104 19-39 (245)
5 PF04001 Vhr1: Transcription f 22.4 19 0.0004 26.0 -1.0 21 76-96 15-35 (95)
6 PF11733 NP1-WLL: Non-capsid p 17.6 52 0.0011 23.6 0.4 29 12-40 10-42 (94)
7 PF10419 TFIIIC_sub6: TFIIIC s 13.8 89 0.0019 18.2 0.7 9 90-98 27-35 (35)
8 PF08495 FIST: FIST N domain; 13.0 61 0.0013 22.8 -0.2 27 76-105 165-192 (198)
9 PF15000 TUSC2: Tumour suppres 11.8 1.1E+02 0.0024 22.6 0.8 21 79-103 56-76 (111)
10 PF06881 Elongin_A: RNA polyme 11.5 1.1E+02 0.0025 20.9 0.8 18 74-91 31-48 (109)
No 1
>KOG3586|consensus
Probab=99.52 E-value=1.2e-14 Score=123.32 Aligned_cols=34 Identities=65% Similarity=1.175 Sum_probs=32.8
Q ss_pred ccceeeeecCHHHHHHHHccCceeeeeCCCccCC
Q psy7374 72 LRHVTCHLETKELWDKFNELGTEMIITKTGRKLF 105 (106)
Q Consensus 72 ~~~i~v~Le~~~LW~~Fh~lgtEMIITKsGRRMF 105 (106)
...|.|.||.++||++||++||||||||+|||||
T Consensus 77 ~a~i~~~Le~keLWdrFh~lGTEMIITKsGRRMF 110 (437)
T KOG3586|consen 77 LAPIQVQLETKELWDRFHDLGTEMIITKSGRRMF 110 (437)
T ss_pred ccceEEEeehHHHHHHHHhcCceEEEeccccccc
Confidence 5689999999999999999999999999999999
No 2
>KOG3585|consensus
Probab=99.09 E-value=6.5e-11 Score=96.70 Aligned_cols=35 Identities=54% Similarity=0.944 Sum_probs=32.6
Q ss_pred ccceeeeecCHHHHHHHHccCceeeeeCCCccCCC
Q psy7374 72 LRHVTCHLETKELWDKFNELGTEMIITKTGRKLFQ 106 (106)
Q Consensus 72 ~~~i~v~Le~~~LW~~Fh~lgtEMIITKsGRRMF~ 106 (106)
...|+|+|++.+||++||.++|||||||.|||||.
T Consensus 22 ~~~~~v~l~~~eLW~~fh~~~~EmiitK~GRrmFP 56 (328)
T KOG3585|consen 22 PIQVKVSLENRELWKKFHEHGTEMIVTKRGRRMFP 56 (328)
T ss_pred CcccEEEEechhHHHhhccCccEEEEecCCceecc
Confidence 34599999999999999999999999999999994
No 3
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=41.89 E-value=24 Score=20.74 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=16.8
Q ss_pred HHHHHHHHccCceeeeeCCCccCC
Q psy7374 82 KELWDKFNELGTEMIITKTGRKLF 105 (106)
Q Consensus 82 ~~LW~~Fh~lgtEMIITKsGRRMF 105 (106)
.++++....-+ +++||+.|+..|
T Consensus 12 ~~~l~~v~~~~-pv~It~~g~~~a 34 (52)
T TIGR01552 12 GELLKRVRDGE-PVTITKRGRPVA 34 (52)
T ss_pred HHHHHHHHCCC-CEEEEECCcceE
Confidence 45666776644 999999998653
No 4
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=37.67 E-value=23 Score=29.21 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=17.4
Q ss_pred HHHHHHHHccCceeeeeCCCccC
Q psy7374 82 KELWDKFNELGTEMIITKTGRKL 104 (106)
Q Consensus 82 ~~LW~~Fh~lgtEMIITKsGRRM 104 (106)
.+|=++|+++||+-||+ |||+
T Consensus 19 l~lak~f~elgN~VIi~--gR~e 39 (245)
T COG3967 19 LALAKRFLELGNTVIIC--GRNE 39 (245)
T ss_pred HHHHHHHHHhCCEEEEe--cCcH
Confidence 46789999999999997 5654
No 5
>PF04001 Vhr1: Transcription factor Vhr1; InterPro: IPR007147 This is a family of proteins of unknown function found in yeast.
Probab=22.44 E-value=19 Score=25.97 Aligned_cols=21 Identities=19% Similarity=0.525 Sum_probs=17.5
Q ss_pred eeeecCHHHHHHHHccCceee
Q psy7374 76 TCHLETKELWDKFNELGTEMI 96 (106)
Q Consensus 76 ~v~Le~~~LW~~Fh~lgtEMI 96 (106)
.+.+.++.+|+.|.....|.|
T Consensus 15 ~LnF~De~~WK~FSsRRLELI 35 (95)
T PF04001_consen 15 QLNFHDERKWKRFSSRRLELI 35 (95)
T ss_pred HhCCccHHHHHHHHHHHHHHH
Confidence 456788999999999888876
No 6
>PF11733 NP1-WLL: Non-capsid protein NP1; InterPro: IPR021075 This entry represents the bocavirus non-capsid protein NP1 [].
Probab=17.56 E-value=52 Score=23.64 Aligned_cols=29 Identities=38% Similarity=0.692 Sum_probs=17.9
Q ss_pred ccccccCCCCccccccc----ccccCCCCCccc
Q psy7374 12 HNHKRRRGSPIRKSQRD----RDDRSRSPPEIS 40 (106)
Q Consensus 12 ~~~~~~~~~~~~~~~~~----~~~~s~s~~~~~ 40 (106)
|..-+|.|||.|...+. +..|||||+--+
T Consensus 10 hrs~kR~~sp~r~ER~r~Wq~hrsrSRSPIR~~ 42 (94)
T PF11733_consen 10 HRSYKRKGSPLRDERKRQWQHHRSRSRSPIRHH 42 (94)
T ss_pred hhhhccCCCcchhhhhhhhhhccccccChhhhh
Confidence 55567889998764321 223788887543
No 7
>PF10419 TFIIIC_sub6: TFIIIC subunit; InterPro: IPR019481 This conserved domain is found in a family of proteins that function as subunits of transcription factor IIIC (TFIIIC) []. TFIIIC in yeast and humans is required for transcription of tRNA and 5 S RNA genes by RNA polymerase III. The yeast proteins in this entry are fused to phosphoglycerate mutase domain.
Probab=13.81 E-value=89 Score=18.22 Aligned_cols=9 Identities=33% Similarity=0.745 Sum_probs=6.3
Q ss_pred ccCceeeee
Q psy7374 90 ELGTEMIIT 98 (106)
Q Consensus 90 ~lgtEMIIT 98 (106)
.+||||+++
T Consensus 27 ~iGT~l~F~ 35 (35)
T PF10419_consen 27 TIGTELFFE 35 (35)
T ss_pred hcceeEeeC
Confidence 367888864
No 8
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=12.99 E-value=61 Score=22.85 Aligned_cols=27 Identities=22% Similarity=0.480 Sum_probs=16.7
Q ss_pred eeeecCHHHHHHHHccCceeeeeCC-CccCC
Q psy7374 76 TCHLETKELWDKFNELGTEMIITKT-GRKLF 105 (106)
Q Consensus 76 ~v~Le~~~LW~~Fh~lgtEMIITKs-GRRMF 105 (106)
++.......|+.+ +.+|+|||+ ||.++
T Consensus 165 ~~~~~~~~g~~p~---g~~~~VT~a~~~~I~ 192 (198)
T PF08495_consen 165 KIDSFVSHGWEPI---GKPMTVTKAEGNIIY 192 (198)
T ss_pred eEEEEEecCeEeC---CCCEEEEEecCCEEE
Confidence 3333334455544 789999996 66554
No 9
>PF15000 TUSC2: Tumour suppressor candidate 2
Probab=11.83 E-value=1.1e+02 Score=22.58 Aligned_cols=21 Identities=48% Similarity=0.681 Sum_probs=16.4
Q ss_pred ecCHHHHHHHHccCceeeeeCCCcc
Q psy7374 79 LETKELWDKFNELGTEMIITKTGRK 103 (106)
Q Consensus 79 Le~~~LW~~Fh~lgtEMIITKsGRR 103 (106)
=|+-+|=.+|.+ | ||||+|++
T Consensus 56 DeDGdlAhEFYe---E-~v~~~g~~ 76 (111)
T PF15000_consen 56 DEDGDLAHEFYE---E-VVTKNGRK 76 (111)
T ss_pred cCCcchhhhhhh---h-hhccCCcc
Confidence 356678888887 6 99999875
No 10
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=11.54 E-value=1.1e+02 Score=20.90 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=14.6
Q ss_pred ceeeeecCHHHHHHHHcc
Q psy7374 74 HVTCHLETKELWDKFNEL 91 (106)
Q Consensus 74 ~i~v~Le~~~LW~~Fh~l 91 (106)
.+.+..+.++||..|...
T Consensus 31 np~l~~~tdeLW~~~i~r 48 (109)
T PF06881_consen 31 NPHLIEDTDELWKKLIKR 48 (109)
T ss_pred CCCcchhhHHHHHHHHHh
Confidence 456777899999999875
Done!