Query psy7374
Match_columns 106
No_of_seqs 131 out of 360
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 16:37:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x6u_A T-box transcription fac 99.5 1.5E-14 5.2E-19 110.3 3.2 34 72-105 3-36 (203)
2 1h6f_A T-box transcription fac 99.5 2.2E-14 7.4E-19 108.6 3.3 33 73-105 3-35 (193)
3 4a04_A T-box transcription fac 99.4 2.5E-14 8.5E-19 109.0 3.0 33 73-105 14-46 (203)
4 2k4f_A T-cell surface glycopro 18.2 31 0.0011 21.9 0.4 10 20-29 39-48 (57)
5 2a6q_A Antitoxin YEFM; YEFM, a 17.3 82 0.0028 19.4 2.3 22 82-103 17-38 (86)
6 3mz1_A Putative transcriptiona 11.1 53 0.0018 22.1 0.0 22 85-106 42-63 (300)
7 3hw5_A Polymerase acidic prote 10.4 99 0.0034 24.5 1.3 31 74-104 126-160 (261)
8 3hs2_A PHD protein, prevent HO 8.9 2.5E+02 0.0085 16.1 2.5 20 84-104 16-35 (58)
9 3dbo_A Uncharacterized protein 8.6 74 0.0025 21.2 0.0 22 82-104 21-42 (93)
10 2odk_A Hypothetical protein; p 7.6 2.3E+02 0.008 17.8 2.1 20 83-103 17-36 (89)
No 1
>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*
Probab=99.47 E-value=1.5e-14 Score=110.31 Aligned_cols=34 Identities=53% Similarity=0.995 Sum_probs=32.3
Q ss_pred ccceeeeecCHHHHHHHHccCceeeeeCCCccCC
Q psy7374 72 LRHVTCHLETKELWDKFNELGTEMIITKTGRKLF 105 (106)
Q Consensus 72 ~~~i~v~Le~~~LW~~Fh~lgtEMIITKsGRRMF 105 (106)
+.+|+|+|++.+||++||++||||||||+|||||
T Consensus 3 ~~~i~V~L~~~~LW~~F~~~~tEMIiTk~GRrmF 36 (203)
T 2x6u_A 3 MEGIKVFLHERELWLKFHEVGTEMIITKAGRRMF 36 (203)
T ss_dssp -CCCEEEETTHHHHHHHHHHCCEEECBSSCEECS
T ss_pred cCCCEEEECCHHHHHhcCcCCceEEEecCCcccC
Confidence 5689999999999999999999999999999999
No 2
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Probab=99.46 E-value=2.2e-14 Score=108.60 Aligned_cols=33 Identities=58% Similarity=1.071 Sum_probs=31.4
Q ss_pred cceeeeecCHHHHHHHHccCceeeeeCCCccCC
Q psy7374 73 RHVTCHLETKELWDKFNELGTEMIITKTGRKLF 105 (106)
Q Consensus 73 ~~i~v~Le~~~LW~~Fh~lgtEMIITKsGRRMF 105 (106)
.+|+|+|++.+||++||++||||||||+|||||
T Consensus 3 ~~i~V~L~~~~LW~~F~~~~tEMIiTk~GRrmF 35 (193)
T 1h6f_A 3 DDPKVHLEAKELWDQFHKRGTEMVITKSGRRMF 35 (193)
T ss_dssp -CCEEEETTHHHHHHHHHHCCEEECCTTCBCCS
T ss_pred CCCEEEECCHHHHHhhCcccceEEEecCCcccC
Confidence 478999999999999999999999999999999
No 3
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}
Probab=99.45 E-value=2.5e-14 Score=109.00 Aligned_cols=33 Identities=61% Similarity=1.097 Sum_probs=31.6
Q ss_pred cceeeeecCHHHHHHHHccCceeeeeCCCccCC
Q psy7374 73 RHVTCHLETKELWDKFNELGTEMIITKTGRKLF 105 (106)
Q Consensus 73 ~~i~v~Le~~~LW~~Fh~lgtEMIITKsGRRMF 105 (106)
.+|+|+|++++||++||++||||||||+|||||
T Consensus 14 ~~i~V~Le~~~LW~~Fh~~~tEMIITK~GRrmF 46 (203)
T 4a04_A 14 GGVSVQLEMKALWDEFNQLGTEMIVTKAGRRMF 46 (203)
T ss_dssp -CCEEEETTHHHHHHHHHHCCEEECCSSCEECS
T ss_pred CCcEEEeCCHHHHHhhCcCCCeEEEEeCCcccC
Confidence 479999999999999999999999999999999
No 4
>2k4f_A T-cell surface glycoprotein CD3 epsilon chain; ITAM, TCR, membrane bound protein, bicelle, immunoglobulin domain, membrane, phosphoprotein; NMR {Mus musculus}
Probab=18.15 E-value=31 Score=21.86 Aligned_cols=10 Identities=70% Similarity=0.999 Sum_probs=8.2
Q ss_pred CCcccccccc
Q psy7374 20 SPIRKSQRDR 29 (106)
Q Consensus 20 ~~~~~~~~~~ 29 (106)
.||||-|||-
T Consensus 39 EpIRkGqrdl 48 (57)
T 2k4f_A 39 EPIRKGQRDL 48 (57)
T ss_dssp CTTCCCCCHH
T ss_pred chhhcccHHH
Confidence 5899999974
No 5
>2a6q_A Antitoxin YEFM; YEFM, antitoxin, addiction modules, RNAse, inhibitor, toxin inhibitor/toxin complex; 2.05A {Escherichia coli} SCOP: d.306.1.1
Probab=17.31 E-value=82 Score=19.40 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=16.5
Q ss_pred HHHHHHHHccCceeeeeCCCcc
Q psy7374 82 KELWDKFNELGTEMIITKTGRK 103 (106)
Q Consensus 82 ~~LW~~Fh~lgtEMIITKsGRR 103 (106)
.++++....-+-..+||+.|+.
T Consensus 17 ~~~~~~v~~~~epviItr~g~~ 38 (86)
T 2a6q_A 17 SATMMKAVEDHAPILITRQNGE 38 (86)
T ss_dssp HHHHHHHHHHTCCEEEECTTSC
T ss_pred HHHHHHHHhcCCcEEEEeCCCc
Confidence 4556666666778999999985
No 6
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=11.09 E-value=53 Score=22.15 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHccCceeeeeCCCccCCC
Q psy7374 85 WDKFNELGTEMIITKTGRKLFQ 106 (106)
Q Consensus 85 W~~Fh~lgtEMIITKsGRRMF~ 106 (106)
=..|.+-+..|.+|..|++++.
T Consensus 42 ~~Lf~R~~~~~~lT~~G~~l~~ 63 (300)
T 3mz1_A 42 TKLLNRTTRRVLVTPDGALYYE 63 (300)
T ss_dssp ----------------------
T ss_pred CeeEecCCCceeeCHhHHHHHH
Confidence 4567778889999999998763
No 7
>3hw5_A Polymerase acidic protein; avian influenza virus, PA_N, AMP, phosphoprotein, hydrolase; HET: AMP; 1.81A {Influenza a virus} PDB: 3hw4_A* 3hw3_A* 3hw6_A 3ebj_A 2w69_A 4avl_A* 4avg_A* 4avq_A 4awf_A* 4awg_A* 4awh_A* 4awm_A* 4e5e_A 4e5f_A* 4e5g_A* 4e5h_A* 4e5i_A* 4e5j_A* 4e5l_A* 4awk_A*
Probab=10.38 E-value=99 Score=24.53 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=24.4
Q ss_pred ceeeeecCHHHHHHHHccCce----eeeeCCCccC
Q psy7374 74 HVTCHLETKELWDKFNELGTE----MIITKTGRKL 104 (106)
Q Consensus 74 ~i~v~Le~~~LW~~Fh~lgtE----MIITKsGRRM 104 (106)
+|+-.+.+.=.|.++..+++| ||++=.||-|
T Consensus 126 GiTr~~~d~Yf~~K~~Kl~~~s~~i~iFSy~g~~~ 160 (261)
T 3hw5_A 126 GVTRREVHTYYLEKANKIKSEKTHIHIFSFTGEEM 160 (261)
T ss_dssp EEESSCHHHHHHHHHHHHCCSSCEEEEEETTSCEE
T ss_pred eecccccHHHHHHHHhhhcCcceEEEEEeecchhc
Confidence 455566777789999999884 7888888876
No 8
>3hs2_A PHD protein, prevent HOST death protein; intrinsic disorder, DOC, toxin-anti antitoxin; 2.20A {Enterobacteria phage P1}
Probab=8.94 E-value=2.5e+02 Score=16.11 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=13.8
Q ss_pred HHHHHHccCceeeeeCCCccC
Q psy7374 84 LWDKFNELGTEMIITKTGRKL 104 (106)
Q Consensus 84 LW~~Fh~lgtEMIITKsGRRM 104 (106)
|-+.. +-|-+.+||+.|+..
T Consensus 16 ll~~v-~~~e~v~Itr~g~~~ 35 (58)
T 3hs2_A 16 VLNNV-EAGEEVEITRRGREP 35 (58)
T ss_dssp HHHHH-HTTCCEEEECTTSCC
T ss_pred HHHHH-hCCCcEEEEECCCce
Confidence 33443 347789999999853
No 9
>3dbo_A Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis}
Probab=8.62 E-value=74 Score=21.16 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=0.0
Q ss_pred HHHHHHHHccCceeeeeCCCccC
Q psy7374 82 KELWDKFNELGTEMIITKTGRKL 104 (106)
Q Consensus 82 ~~LW~~Fh~lgtEMIITKsGRRM 104 (106)
.+|++...+ |-|.+||+.|+-+
T Consensus 21 s~ll~~v~~-GE~vvITr~GkPv 42 (93)
T 3dbo_A 21 AGVLRRVRA-GEDVTITVSGRPV 42 (93)
T ss_dssp -----------------------
T ss_pred HHHHHHHHC-CCcEEEEECCEEE
Confidence 455666554 8899999999854
No 10
>2odk_A Hypothetical protein; prevent-HOST-death protein, structural genomics, APC7367, PS protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: d.306.1.1
Probab=7.55 E-value=2.3e+02 Score=17.82 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=13.5
Q ss_pred HHHHHHHccCceeeeeCCCcc
Q psy7374 83 ELWDKFNELGTEMIITKTGRK 103 (106)
Q Consensus 83 ~LW~~Fh~lgtEMIITKsGRR 103 (106)
+|=+.... +-+.+||+.|+-
T Consensus 17 ~l~~~v~~-~epv~ITr~G~~ 36 (89)
T 2odk_A 17 EFLDACIT-EGPQIVSRRGAE 36 (89)
T ss_dssp HHHHHHHH-TCCEEEEETTEE
T ss_pred HHHHHHhc-CCCEEEEECCcc
Confidence 33444444 668999999974
Done!