Query psy7374
Match_columns 106
No_of_seqs 131 out of 360
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 16:38:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7374.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7374hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qeec1 c.1.9.8 (C:2-416) Unch 13.4 15 0.0011 27.5 -0.5 13 3-15 16-28 (415)
2 d1j5sa_ c.1.9.8 (A:) Uronate i 12.1 20 0.0014 27.3 -0.3 13 3-15 22-34 (451)
3 d2p8ia1 d.58.55.1 (A:1-115) Pu 11.1 30 0.0022 22.5 0.4 14 4-17 5-18 (115)
4 d1o7za_ d.9.1.1 (A:) IP-10/CXC 7.8 70 0.0051 18.3 1.2 11 93-103 31-43 (61)
5 d2jmfa1 b.72.1.1 (A:521-553) U 6.8 61 0.0044 16.5 0.5 14 92-105 6-19 (33)
6 d1q7ha1 b.122.1.1 (A:69-153) H 5.3 1.1E+02 0.0079 17.5 1.0 12 77-88 73-84 (85)
7 d2ia1a1 d.359.1.1 (A:1-166) Un 5.2 1.4E+02 0.01 20.4 1.7 21 82-102 82-108 (166)
8 d1fjca_ d.58.7.1 (A:) Nucleoli 5.1 1.3E+02 0.0098 16.8 1.4 29 74-102 23-51 (96)
9 d1vdra_ c.71.1.1 (A:) Dihydrof 4.8 2.1E+02 0.015 17.8 2.4 28 72-100 93-120 (157)
10 d1wima_ g.44.1.1 (A:) UbcM4-in 4.8 68 0.005 18.2 -0.2 24 78-101 71-94 (94)
No 1
>d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus halodurans [TaxId: 86665]}
Probab=13.42 E-value=15 Score=27.55 Aligned_cols=13 Identities=23% Similarity=0.703 Sum_probs=11.4
Q ss_pred eeccccccccccc
Q psy7374 3 IETTPISSYHNHK 15 (106)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (106)
|+..||-+||+|-
T Consensus 16 i~~~PIID~H~HL 28 (415)
T d2qeec1 16 VNNQPVTDMHTHL 28 (415)
T ss_dssp HHHSCEEECSCSC
T ss_pred HcCCCEeCCCCCc
Confidence 6789999999994
No 2
>d1j5sa_ c.1.9.8 (A:) Uronate isomerase TM0064 {Thermotoga maritima [TaxId: 2336]}
Probab=12.12 E-value=20 Score=27.28 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=11.5
Q ss_pred eeccccccccccc
Q psy7374 3 IETTPISSYHNHK 15 (106)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (106)
|+..||-.||+|-
T Consensus 22 i~~~PIiD~H~Hl 34 (451)
T d1j5sa_ 22 VKDLPIVDPHNHL 34 (451)
T ss_dssp HTTSCEEESCCCC
T ss_pred HhCCCEeCCCCCC
Confidence 6889999999993
No 3
>d2p8ia1 d.58.55.1 (A:1-115) Putative dioxygenase BxeB0224 {Burkholderia xenovorans [TaxId: 36873]}
Probab=11.14 E-value=30 Score=22.54 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=11.0
Q ss_pred eccccccccccccc
Q psy7374 4 ETTPISSYHNHKRR 17 (106)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (106)
-|++|.+||-|---
T Consensus 5 ~~~~I~~yhaHVYf 18 (115)
T d2p8ia1 5 DTSAIASWHAHVYF 18 (115)
T ss_dssp CGGGCCEEEEEEEE
T ss_pred cCccccceEEEEEC
Confidence 47899999998543
No 4
>d1o7za_ d.9.1.1 (A:) IP-10/CXCL10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.85 E-value=70 Score=18.27 Aligned_cols=11 Identities=55% Similarity=0.767 Sum_probs=6.8
Q ss_pred ceeeee-C-CCcc
Q psy7374 93 TEMIIT-K-TGRK 103 (106)
Q Consensus 93 tEMIIT-K-sGRR 103 (106)
.|.|+| | +|+.
T Consensus 31 ~EVIaTLK~ng~~ 43 (61)
T d1o7za_ 31 VEIIATMKKKGEK 43 (61)
T ss_dssp CEEEEEETTTSCE
T ss_pred cEEEEEeecCCcE
Confidence 577776 5 5654
No 5
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=6.83 E-value=61 Score=16.50 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=9.9
Q ss_pred CceeeeeCCCccCC
Q psy7374 92 GTEMIITKTGRKLF 105 (106)
Q Consensus 92 gtEMIITKsGRRMF 105 (106)
|=||.++..||.-|
T Consensus 6 GWe~~~d~~G~~Yy 19 (33)
T d2jmfa1 6 GWEIRYTAAGERFF 19 (33)
T ss_dssp TEEEEECTTSCEEE
T ss_pred CeeEEECCCCCEEE
Confidence 34788888887644
No 6
>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423, C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=5.28 E-value=1.1e+02 Score=17.54 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=8.6
Q ss_pred eeecCHHHHHHH
Q psy7374 77 CHLETKELWDKF 88 (106)
Q Consensus 77 v~Le~~~LW~~F 88 (106)
+....++||+.|
T Consensus 73 ~h~~gD~lw~~~ 84 (85)
T d1q7ha1 73 IHFPGDELIRAF 84 (85)
T ss_dssp EECTTSHHHHHC
T ss_pred EEEcCceEEEec
Confidence 344578999986
No 7
>d2ia1a1 d.359.1.1 (A:1-166) Uncharacterized protein BH3703 {Bacillus halodurans [TaxId: 86665]}
Probab=5.15 E-value=1.4e+02 Score=20.35 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=16.7
Q ss_pred HHHHHHHHccC------ceeeeeCCCc
Q psy7374 82 KELWDKFNELG------TEMIITKTGR 102 (106)
Q Consensus 82 ~~LW~~Fh~lg------tEMIITKsGR 102 (106)
.+||+.|.+-+ .+|+++..|+
T Consensus 82 ~~Lr~~Fk~n~qE~Wts~t~~l~~~Gk 108 (166)
T d2ia1a1 82 SDFRKDYAEAFGEPWMSFQMTFYASGK 108 (166)
T ss_dssp HHHHHHHHHHHSSCCSEEEEEEETTSC
T ss_pred HHHHHHHHHcCCCcceEEEEEEecCCc
Confidence 68899998763 2799999986
No 8
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}
Probab=5.08 E-value=1.3e+02 Score=16.82 Aligned_cols=29 Identities=14% Similarity=0.367 Sum_probs=20.4
Q ss_pred ceeeeecCHHHHHHHHccCceeeeeCCCc
Q psy7374 74 HVTCHLETKELWDKFNELGTEMIITKTGR 102 (106)
Q Consensus 74 ~i~v~Le~~~LW~~Fh~lgtEMIITKsGR 102 (106)
.|.......+|.+.|.+.|.-.++...|+
T Consensus 23 nL~~~~te~~l~~~F~~~g~v~~~~~~~~ 51 (96)
T d1fjca_ 23 NLSFNITEDELKEVFEDALEIRLVSQDGK 51 (96)
T ss_dssp SCCSSCCHHHHHHHHCSEEEECCEEETTE
T ss_pred CCCCCCCHHHHHHHHHhcccceeeeecCc
Confidence 44556677889999998887666655543
No 9
>d1vdra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Haloferax volcanii [TaxId: 2246]}
Probab=4.81 E-value=2.1e+02 Score=17.82 Aligned_cols=28 Identities=7% Similarity=0.214 Sum_probs=23.1
Q ss_pred ccceeeeecCHHHHHHHHccCceeeeeCC
Q psy7374 72 LRHVTCHLETKELWDKFNELGTEMIITKT 100 (106)
Q Consensus 72 ~~~i~v~Le~~~LW~~Fh~lgtEMIITKs 100 (106)
.++|.| +=..+++..|-.+-+|++||.-
T Consensus 93 ~~~i~I-iGG~~iy~~~l~~~d~i~lT~I 120 (157)
T d1vdra_ 93 AETAYV-IGGAAIYALFQPHLDRMVLSRV 120 (157)
T ss_dssp CSCEEE-EECHHHHHHHGGGCSEEEEEEE
T ss_pred CceEEE-EechHHhhhhcccCCEEEEEEe
Confidence 356766 4889999999999999999963
No 10
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.79 E-value=68 Score=18.22 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=16.8
Q ss_pred eecCHHHHHHHHccCceeeeeCCC
Q psy7374 78 HLETKELWDKFNELGTEMIITKTG 101 (106)
Q Consensus 78 ~Le~~~LW~~Fh~lgtEMIITKsG 101 (106)
.|.+.+++++|.++..+..+-.+|
T Consensus 71 ~ll~~~~~~ky~~~~l~~~~~ssg 94 (94)
T d1wima_ 71 CMVAAEIMQRYKKLQFERSGPSSG 94 (94)
T ss_dssp HHSCHHHHHHHHHHHHHSSCSSCC
T ss_pred HhCCHHHHHHHHHHHHHhccccCC
Confidence 456788999998876666555444
Done!