RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7374
(106 letters)
>1xbr_A Protein (T protein); complex (transcription factor/DNA),
transcription factor, DNA-binding protein,
transcription/DNA complex; HET: DNA; 2.50A {Xenopus
laevis} SCOP: b.2.5.4
Length = 184
Score = 47.0 bits (111), Expect = 7e-08
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 75 VTCHLETKELWDKFNELGTEMIITKTGRKLFQ 106
+ LE ++LW +F EL EMI+TK GR++F
Sbjct: 2 LKVSLEERDLWTRFKELTNEMIVTKNGRRMFP 33
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins;
HET: DNA; 2.58A {Homo sapiens}
Length = 203
Score = 44.8 bits (105), Expect = 5e-07
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 64 QERFNSEELRHVTCHLETKELWDKFNELGTEMIITKTGRKLFQ 106
N V+ LE K LWD+FN+LGTEMI+TK GR++F
Sbjct: 5 HHHENLYFQGGVSVQLEMKALWDEFNQLGTEMIVTKAGRRMFP 47
>2x6u_A T-box transcription factor TBX5; developmental protein,
DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear
protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB:
2x6v_A*
Length = 203
Score = 44.4 bits (104), Expect = 7e-07
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 75 VTCHLETKELWDKFNELGTEMIITKTGRKLFQ 106
+ L +ELW KF+E+GTEMIITK GR++F
Sbjct: 6 IKVFLHERELWLKFHEVGTEMIITKAGRRMFP 37
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box
transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Length = 193
Score = 42.9 bits (100), Expect = 2e-06
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 75 VTCHLETKELWDKFNELGTEMIITKTGRKLFQ 106
HLE KELWD+F++ GTEM+ITK+GR++F
Sbjct: 5 PKVHLEAKELWDQFHKRGTEMVITKSGRRMFP 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.087
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 24/82 (29%)
Query: 22 IRKSQRDRDDRSRSPPEISSSTSGGDDASLDVCQTPPLNPLLQERFNSEELRHVTC---- 77
I + R D S + S L LL+ + + C
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAE------------LRRLLKSK------PYENCLLVL 250
Query: 78 -HLETKELWDKFNELGTEMIIT 98
+++ + W+ FN L ++++T
Sbjct: 251 LNVQNAKAWNAFN-LSCKILLT 271
Score = 25.6 bits (55), Expect = 4.1
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 13/62 (20%)
Query: 48 DASLDVCQTPPLNP-LLQERFNS----EELRHVTCH-LETKELWDKFNELGTEMIITKTG 101
++SL+V L P ++ F+ H+ L +W + +++ K
Sbjct: 360 ESSLNV-----LEPAEYRKMFDRLSVFPPSAHIPTILLSL--IWFDVIKSDVMVVVNKLH 412
Query: 102 RK 103
+
Sbjct: 413 KY 414
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.48
Identities = 18/108 (16%), Positives = 27/108 (25%), Gaps = 55/108 (50%)
Query: 30 DDRSRSPPE--ISSSTSGGDDASLDVCQTPPLNPLLQERFNSEELRH--VTCH---LETK 82
++ S +P + + S S PL ++Q L H VT
Sbjct: 220 ENPSNTPDKDYLLSIP-----ISC------PLIGVIQ-------LAHYVVTAKLLGFTPG 261
Query: 83 EL-------------------------WDKFNELGTEMIITKTGRKLF 105
EL W+ F + I LF
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI-----TVLF 304
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein
structure initiative, joint center for structural G
transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Length = 298
Score = 27.0 bits (60), Expect = 1.1
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 68 NSEELRHVTCHLETKELWDKFNELGTEMIITKTG 101
+S E +T + +E G ++I+
Sbjct: 185 DSREAETLTGTNDLRESCRIIRSFGAKIILATHA 218
>2icw_G Mycoplasma arthritidis mitogen; TCR, MHC, superantigen,
protein-protein complex, immune system; 2.41A
{Mycoplasma arthritidis} SCOP: a.202.1.1 PDB: 2oje_D
1r5i_D 3kph_A
Length = 213
Score = 25.4 bits (55), Expect = 3.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 82 KELWDKFNELGTEMIITKTGRKL 104
+ELWDK +L EM I G+KL
Sbjct: 129 QELWDKAVKLTKEMKIKLKGQKL 151
>3ew1_A Rhizavidin; high affinity, biotin, unknown function; 1.50A
{Rhizobium etli} PDB: 3ew2_A*
Length = 135
Score = 25.1 bits (54), Expect = 4.4
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 67 FNSEELRHVTCHLETKELWDKFNELGTEMIITKTGRKLFQ 106
F++ + + W N+ G+ MII
Sbjct: 1 FDASNFKDFSSIASASSSW--QNQSGSTMIIQVDSFGNVS 38
>2f01_A Streptavidin; protein/ligand interactions, biotin, biotin BI
protein; HET: BTN BTQ; 0.85A {Streptomyces avidinii}
SCOP: b.61.1.1 PDB: 1swa_A 1swb_A 1swc_A 1swd_A* 1swe_A*
1mk5_A* 2g5l_A* 2gh7_A* 3ry1_A* 3ry2_A* 1i9h_A* 1hqq_A
1hxl_A 1hxz_A 1hy2_A 3t6f_A* 3t6l_A 1swu_A 1ndj_A 1rst_B
...
Length = 127
Score = 24.7 bits (53), Expect = 6.2
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 85 WDKFNELGTEMIITKTGRKLFQ 106
W +N+LG+ I+T
Sbjct: 9 W--YNQLGSTFIVTAGADGALT 28
>2zsc_A Tamavidin2; biotin binding protein, avidin-like structure; HET:
BTN; 1.30A {Pleurotus cornucopiae}
Length = 141
Score = 24.6 bits (53), Expect = 6.7
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 88 FNELGTEMIITKTGRKLF 105
+NEL ++M +T
Sbjct: 13 YNELNSKMELTANKDGTL 30
>2bc3_A Streptavidin; T7 TAG, biotin binding protein; 1.54A {Streptomyces
avidinii} SCOP: b.61.1.1 PDB: 2wpu_A* 3pk2_A* 2qcb_A*
1stp_A*
Length = 159
Score = 24.4 bits (52), Expect = 8.2
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 88 FNELGTEMIITKTGRKLFQ 106
+N+LG+ I+T
Sbjct: 22 YNQLGSTFIVTAGADGALT 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.386
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,573,835
Number of extensions: 76805
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 22
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.0 bits)