RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7374
         (106 letters)



>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 184

 Score = 58.0 bits (140), Expect = 2e-12
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 75  VTCHLETKELWDKFNELGTEMIITKTGRKLF 105
           +   LE ++LW +F EL  EMI+TK GR++F
Sbjct: 2   LKVSLEERDLWTRFKELTNEMIVTKNGRRMF 32


>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 184

 Score = 54.1 bits (130), Expect = 6e-11
 Identities = 19/31 (61%), Positives = 26/31 (83%)

Query: 75  VTCHLETKELWDKFNELGTEMIITKTGRKLF 105
              HLE KELWD+F++ GTEM+ITK+GR++F
Sbjct: 2   PKVHLEAKELWDQFHKRGTEMVITKSGRRMF 32


>d2f01a1 b.61.1.1 (A:14-134) Streptavidin {Streptomyces avidinii
           [TaxId: 1895]}
          Length = 121

 Score = 25.2 bits (55), Expect = 1.4
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 88  FNELGTEMIITKTGRKLFQ 106
           +N+LG+  I+T        
Sbjct: 9   YNQLGSTFIVTAGADGALT 27


>d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493
          {Bacillus halodurans [TaxId: 86665]}
          Length = 415

 Score = 24.1 bits (52), Expect = 4.8
 Identities = 3/12 (25%), Positives = 6/12 (50%)

Query: 3  IETTPISSYHNH 14
          +   P++  H H
Sbjct: 16 VNNQPVTDMHTH 27


>d1j5sa_ c.1.9.8 (A:) Uronate isomerase TM0064 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 451

 Score = 23.8 bits (51), Expect = 5.9
 Identities = 5/12 (41%), Positives = 7/12 (58%)

Query: 3  IETTPISSYHNH 14
          ++  PI   HNH
Sbjct: 22 VKDLPIVDPHNH 33


>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
           8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 348

 Score = 23.1 bits (48), Expect = 9.1
 Identities = 8/48 (16%), Positives = 20/48 (41%)

Query: 59  LNPLLQERFNSEELRHVTCHLETKELWDKFNELGTEMIITKTGRKLFQ 106
           +N +LQ   N+  L         ++  ++ N LG +  + +    + +
Sbjct: 27  MNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMK 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 388,466
Number of extensions: 15510
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 7
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.2 bits)