BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7376
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q922K7|NOP2_MOUSE Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus
GN=Nop2 PE=2 SV=1
Length = 793
Score = 216 bits (551), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 109/222 (49%), Positives = 139/222 (62%), Gaps = 42/222 (18%)
Query: 1 MNIADHEVFAFPSEEEADKVLSIPD---VEQRIKDVLMVLGNFKQYRDPARSRCEYTSLL 57
+N+ D E F P E D+ PD V +RI+D++ VL +F R+ RSR EY S L
Sbjct: 196 INVEDEEAFVLPPAGETDQDGQAPDLQRVHKRIQDIVGVLRDFGAQREEGRSRAEYLSRL 255
Query: 58 LKDLCTYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVN 117
KDL TY+SY +FL+ ++M++FPL EL+ FLEA+E RP+T+RTNTLKTRRRDLAQ L+N
Sbjct: 256 QKDLATYYSYGDFLLSKLMELFPLSELIEFLEANEVPRPITLRTNTLKTRRRDLAQLLIN 315
Query: 118 RGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLG--------------------------- 150
RGVNLDP+GKWSK GLV+Y+S+VPIGATPEYL
Sbjct: 316 RGVNLDPLGKWSKSGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILD 375
Query: 151 ------------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180
A LMKNTGV+ AND + +R K++VGN HRL
Sbjct: 376 MCCAPGGKTSYIAQLMKNTGVILANDANADRLKSVVGNLHRL 417
>sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens
GN=NOP2 PE=1 SV=2
Length = 812
Score = 208 bits (530), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/218 (48%), Positives = 135/218 (61%), Gaps = 42/218 (19%)
Query: 5 DHEVFAFPSEEEADKVLSIPD---VEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDL 61
D E F P E ++ PD V +RI+D++ +L +F R+ RSR EY + L KDL
Sbjct: 215 DEEPFVLPPAGEMEQDAQAPDLQRVHKRIQDIVGILRDFGAQREEGRSRSEYLNRLKKDL 274
Query: 62 CTYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVN 121
Y+SY +FL+ ++M +FPL EL+ FLEA+E RP+T+RTNTLKTRRRDLAQAL+NRGVN
Sbjct: 275 AIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVN 334
Query: 122 LDPIGKWSKVGLVIYNSTVPIGATPEYLG------------------------------- 150
LDP+GKWSK GLV+Y+S+VPIGATPEYL
Sbjct: 335 LDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCA 394
Query: 151 --------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180
A LMKNTGV+ AND + ER K++VGN HRL
Sbjct: 395 PGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRL 432
>sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP8B7.20c PE=1 SV=1
Length = 608
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/194 (46%), Positives = 121/194 (62%), Gaps = 39/194 (20%)
Query: 26 VEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDELM 85
++ RI++++ VL +FK +P R+R EY LL D+C Y+ Y+ FL E++ ++F + E +
Sbjct: 194 IQLRIQEIVRVLNDFKNLCEPGRNRSEYVDQLLNDICAYYGYSRFLAEKLFELFSVSEAV 253
Query: 86 SFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGAT 145
F EA+E RP+TIRTNTLKT+RR+LAQAL+NRGVNL+PIGKWSKVGL ++ S VPIGAT
Sbjct: 254 EFFEANEMPRPVTIRTNTLKTQRRELAQALINRGVNLEPIGKWSKVGLQVFESQVPIGAT 313
Query: 146 PEYLG---------------------------------------AALMKNTGVLFANDVS 166
PEYL AAL KNTG++FAND +
Sbjct: 314 PEYLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAALQKNTGIIFANDSN 373
Query: 167 KERSKAIVGNFHRL 180
K R+KA+ N HRL
Sbjct: 374 KARTKALSANIHRL 387
>sp|P40991|NOP2_YEAST Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NOP2 PE=1
SV=1
Length = 618
Score = 181 bits (458), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/191 (48%), Positives = 113/191 (59%), Gaps = 39/191 (20%)
Query: 29 RIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDELMSFL 88
R+ +++ VL NFK RSR EY LLKD+C YF Y FL E++ +F E M F
Sbjct: 203 RMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFF 262
Query: 89 EASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEY 148
EA+E RP+TIRTNTLKTRRRDLAQ LVNRGVNL PIG W+KVGL I++S VPIGATPEY
Sbjct: 263 EANEIARPITIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEY 322
Query: 149 LG---------------------------------------AALMKNTGVLFANDVSKER 169
L +A+MKNTG +FAND +K R
Sbjct: 323 LAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSR 382
Query: 170 SKAIVGNFHRL 180
+K+++ N HRL
Sbjct: 383 TKSLIANIHRL 393
>sp|Q87PA5|RSMF_VIBPA Ribosomal RNA small subunit methyltransferase F OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rsmF PE=3 SV=1
Length = 478
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 60/155 (38%), Gaps = 49/155 (31%)
Query: 71 LMERIMQIFPLD-ELMSFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGK 127
+E+I I P + + F+ A QRPL +IR NTLK D + ++G L P+
Sbjct: 11 FLEKIQTILPANLNMEDFISA--CQRPLRKSIRVNTLKMSVEDFVKRAEDKGWTLSPV-P 67
Query: 128 WSKVGLVIY--NSTVPIGATPEYLG----------------------------------- 150
W G I S VP+G T E++
Sbjct: 68 WCDNGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAAPG 127
Query: 151 ------AALMKNTGVLFANDVSKERSKAIVGNFHR 179
AALMKN GVL AN+ + R K + N R
Sbjct: 128 SKTTQIAALMKNEGVLVANEYAASRVKVLHANIER 162
>sp|Q0TGZ7|RSMF_ECOL5 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI--YNS-TVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I YN +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERYNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFAN + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFANGNAPQR 120
>sp|C3LMI5|RSMF_VIBCM Ribosomal RNA small subunit methyltransferase F OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=rsmF PE=3 SV=2
Length = 473
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 59/160 (36%), Gaps = 49/160 (30%)
Query: 66 SYNEFLMERIMQIFP-LDELMSFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNL 122
S E + + +I P +L F+ A QRPL +IR NTLK + Q + L
Sbjct: 6 SLPEPFIASMAKILPDPTQLADFIAA--CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQL 63
Query: 123 DPIGKWSKVGLVI--YNSTVPIGATPEYLG------------------------------ 150
P+ W + G I S VP+G T E++
Sbjct: 64 TPV-PWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDM 122
Query: 151 -----------AALMKNTGVLFANDVSKERSKAIVGNFHR 179
AALM N GVL AN+ S R K + N R
Sbjct: 123 AAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIER 162
>sp|Q9KRY1|RSMF_VIBCH Ribosomal RNA small subunit methyltransferase F OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rsmF PE=3 SV=2
Length = 473
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 59/160 (36%), Gaps = 49/160 (30%)
Query: 66 SYNEFLMERIMQIFP-LDELMSFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNL 122
S E + + +I P +L F+ A QRPL +IR NTLK + Q + L
Sbjct: 6 SLPEPFIASMAKILPDPTQLADFIAA--CQRPLRKSIRVNTLKISVAEFCQRAAEKEWQL 63
Query: 123 DPIGKWSKVGLVI--YNSTVPIGATPEYLG------------------------------ 150
P+ W + G I S VP+G T E++
Sbjct: 64 TPV-PWCENGFWIDADESLVPLGNTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDM 122
Query: 151 -----------AALMKNTGVLFANDVSKERSKAIVGNFHR 179
AALM N GVL AN+ S R K + N R
Sbjct: 123 AAAPGSKTTQMAALMDNQGVLVANEFSASRVKVLHANIER 162
>sp|A8FWM8|RSMF_SHESH Ribosomal RNA small subunit methyltransferase F OS=Shewanella
sediminis (strain HAW-EB3) GN=rsmF PE=3 SV=1
Length = 478
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 52/161 (32%)
Query: 68 NEFLMERIMQIFP----LDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLD 123
N+ ++ I + P +D+ +S+ +S+ RP +IR NTLK +D + +G L+
Sbjct: 5 NQDFIKSIAKDMPAHLSMDDFISY--SSKPLRP-SIRINTLKISSQDFIALMAPKGWTLE 61
Query: 124 PIGKWSKVGLVI-YNSTVPIGATPEYLG-------------------------------- 150
PI W + G I +S V +G T E+L
Sbjct: 62 PI-PWCQDGFWISLDSDVQLGNTVEHLQGLFYIQEASSMLPPIALFSTKTDKAEHTILDM 120
Query: 151 -----------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180
AA+M N+G+L AN+ S R K + N R+
Sbjct: 121 ASAPGSKTTQIAAMMDNSGLLIANEYSSSRVKVLHANVLRM 161
>sp|B7VNJ8|RSMF_VIBSL Ribosomal RNA small subunit methyltransferase F OS=Vibrio
splendidus (strain LGP32) GN=rsmF PE=3 SV=1
Length = 473
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 57/156 (36%), Gaps = 48/156 (30%)
Query: 69 EFLMERIMQIFPLDELMSFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIG 126
EFL I I P M+ AS Q+PL +IR NTLK D +G L+P+
Sbjct: 10 EFLT-HIESIMPSHLDMASFVAS-CQKPLRKSIRVNTLKISVEDFLVRAKEKGWELEPV- 66
Query: 127 KWSKVGLVIY--NSTVPIGATPEYLG---------------------------------- 150
W + G I S P+G T E++
Sbjct: 67 PWCETGFWITADESEAPLGNTAEHMSGLFYIQEASSMMPPSALFQGEADYQAVLDTAAAP 126
Query: 151 -------AALMKNTGVLFANDVSKERSKAIVGNFHR 179
AALM N GVL AN+ + R K + N R
Sbjct: 127 GSKTTQIAALMNNRGVLVANEYAASRVKVLHANIER 162
>sp|B6IBR3|RSMF_ECOSE Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SE11) GN=rsmF PE=3 SV=2
Length = 479
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+D + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQR 120
>sp|B7M2B1|RSMF_ECO8A Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O8 (strain IAI1) GN=rsmF PE=3 SV=1
Length = 479
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+D + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQR 120
>sp|B7USL2|RSMF_ECO27 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---VP 141
FL A QRPL +IR NTLKT D Q G L PI W + G I + +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|B7L7N7|RSMF_ECO55 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+D + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQR 120
>sp|A7ZMV8|RSMF_ECO24 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+D + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADDNAPQR 120
>sp|Q1RAV2|RSMF_ECOUT Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---VP 141
FL A QRPL +IR NTLKT D Q G L PI W + G I + +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|A1AC00|RSMF_ECOK1 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O1:K1 / APEC GN=rsmF PE=3 SV=2
Length = 479
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---VP 141
FL A QRPL +IR NTLKT D Q G L PI W + G I + +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|B7MBP2|RSMF_ECO45 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST---VP 141
FL A QRPL +IR NTLKT D Q G L PI W + G I + +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDSEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|B8CPH7|RSMF_SHEPW Ribosomal RNA small subunit methyltransferase F OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=rsmF PE=3 SV=2
Length = 474
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 52/162 (32%)
Query: 67 YNEFLMERIMQIFP----LDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNL 122
+N+ + I Q P +++ +S+ +S+ RP +IR NTLK ++ + + +G +
Sbjct: 4 FNQNFINSIKQDLPSHLCMEDFISY--SSKPLRP-SIRVNTLKISSKNFIKLMTPKGWHF 60
Query: 123 DPIGKWSKVGLVI-YNSTVPIGATPEYLG------------------------------- 150
DPI W + G I + V +G T E+L
Sbjct: 61 DPI-PWCENGYWIKLDQEVQLGNTIEHLQGLFYIQEASSMLPPTALLSVEQHDAQQYVLD 119
Query: 151 ------------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180
AALM N G+L AN+ S R K + N R+
Sbjct: 120 MASAPGSKTTQIAALMGNKGLLVANEYSASRVKVLHANIARM 161
>sp|B7MVW5|RSMF_ECO81 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O81 (strain ED1a) GN=rsmF PE=3 SV=1
Length = 479
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLKT D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|Q8FGS9|RSMF_ECOL6 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmF PE=3
SV=2
Length = 479
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLKT D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKTSVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|Q60343|TRM4_METJA tRNA (cytosine(48)-C(5))-methyltransferase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=trm4 PE=1 SV=1
Length = 274
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 47/121 (38%), Gaps = 41/121 (33%)
Query: 99 IRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLG-------- 150
IR NTLK L + L N+GV L+ + + S IG+TPEYL
Sbjct: 13 IRVNTLKINPEVLKKRLENKGVVLEKT--FLDYAFEVKKSPFSIGSTPEYLFGYYMPQSI 70
Query: 151 -------------------------------AALMKNTGVLFANDVSKERSKAIVGNFHR 179
A LMKN G + A ++SK R+KA+ N +R
Sbjct: 71 SSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR 130
Query: 180 L 180
+
Sbjct: 131 M 131
>sp|A0KKI5|RSMF_AERHH Ribosomal RNA small subunit methyltransferase F OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=rsmF PE=3 SV=2
Length = 475
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 55/158 (34%), Gaps = 49/158 (31%)
Query: 69 EFLMERIMQIFPLDELMSFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIG 126
+ + I I P M AS +RPL +IR NTLK + G LDP+
Sbjct: 9 DHFLRHIAAIMPAHLSMDEFVAS-CRRPLRRSIRVNTLKISVAAFVARMQPLGWQLDPV- 66
Query: 127 KWSKVGLVIY--NSTVPIGATPEYLG---------------------------------- 150
W G + + +VP+G T E+L
Sbjct: 67 PWCDTGFWLSREDESVPLGNTAEHLSGLFYIQEASSMLPVTALFACEQTRRDGMLLDAAA 126
Query: 151 ---------AALMKNTGVLFANDVSKERSKAIVGNFHR 179
AALM N G+L AN+ S R K + N R
Sbjct: 127 APGSKTTQIAALMNNQGMLVANEYSSSRLKVLSANLQR 164
>sp|A4SMI9|RSMF_AERS4 Ribosomal RNA small subunit methyltransferase F OS=Aeromonas
salmonicida (strain A449) GN=rsmF PE=3 SV=1
Length = 476
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 55/158 (34%), Gaps = 49/158 (31%)
Query: 69 EFLMERIMQIFPLDELMSFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIG 126
+ + I I P M AS +RPL +IR NTLK D + G D +
Sbjct: 9 DHFLHHIAAIMPAHLSMDEFVAS-CRRPLRRSIRVNTLKISVSDFVMQMQPLGWQFDAV- 66
Query: 127 KWSKVG--LVIYNSTVPIGATPEYLG---------------------------------- 150
W + G L + +VP+G T E+L
Sbjct: 67 PWCETGFWLTRADESVPLGNTAEHLSGLFYIQEASSMLPVTALFASDQVKRDGMLLDAAA 126
Query: 151 ---------AALMKNTGVLFANDVSKERSKAIVGNFHR 179
AALM N G+L AN+ S R K + N R
Sbjct: 127 APGSKTTQIAALMNNQGMLVANEYSSSRLKVLSANIQR 164
>sp|B5FE06|RSMF_VIBFM Ribosomal RNA small subunit methyltransferase F OS=Vibrio fischeri
(strain MJ11) GN=rsmF PE=3 SV=1
Length = 473
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 48/132 (36%), Gaps = 47/132 (35%)
Query: 94 QRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGATPEY 148
+RPL +IR NTLK + Q + +L+P+ W G I + TV +G+T E+
Sbjct: 33 KRPLRRSIRVNTLKNSVEEFKQRAAEKQWDLEPV-PWCDTGFWITRPESDTVKLGSTAEH 91
Query: 149 LG-----------------------------------------AALMKNTGVLFANDVSK 167
+ AA MKN G L AN+ S
Sbjct: 92 MAGLFYIQEASSMMPVTALLKDNDDIEMALDMASAPGSKTTQLAAGMKNQGALVANEFSS 151
Query: 168 ERSKAIVGNFHR 179
R K + N R
Sbjct: 152 SRVKVLCSNIQR 163
>sp|B7LPL0|RSMF_ESCF3 Ribosomal RNA small subunit methyltransferase F OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmF PE=3 SV=1
Length = 479
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ S +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNSPQR 120
>sp|B7NBI3|RSMF_ECOLU Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q + G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTASYGWTLTPI-PWCEEGFWIERDDEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|B5XQ35|RSMF_KLEP3 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae (strain 342) GN=rsmF PE=3 SV=1
Length = 477
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 91 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 145
+ QRPL +IR NTLK D + G L P+ W + G I + +P+G+T
Sbjct: 31 AACQRPLRRSIRVNTLKISVADFLSLVAPYGWQLTPV-PWCEEGFWIERDGDDALPLGST 89
Query: 146 PEYLG-------AALMKNTGVLFANDVSKER 169
E+L A+ M LFA++ ER
Sbjct: 90 AEHLSGLFYIQEASSMLPVAALFADNPQPER 120
>sp|Q0HJM6|RSMF_SHESM Ribosomal RNA small subunit methyltransferase F OS=Shewanella sp.
(strain MR-4) GN=rsmF PE=3 SV=2
Length = 481
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 56/157 (35%), Gaps = 46/157 (29%)
Query: 68 NEFLMERIMQIFPLDELMSFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPI 125
N+ + I Q P M A+ RPL +IR NTLK D Q + +G DPI
Sbjct: 5 NQNFINTIAQELPAHLSMDDFIAA-CSRPLRRSIRVNTLKISSEDFKQLMQPKGWTFDPI 63
Query: 126 GKWSKVGLVI-YNSTVPIGATPEYLG---------------------------------- 150
W + G I Y+ +G E++
Sbjct: 64 -PWCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLASAP 122
Query: 151 -------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180
AALM N G+L AN+ S R K + N R+
Sbjct: 123 GSKTTQMAALMNNQGLLVANEYSASRVKVLHANVLRM 159
>sp|B5YQX9|RSMF_ECO5E Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLKT D + G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|Q8XCL9|RSMF_ECO57 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 GN=rsmF PE=3 SV=2
Length = 479
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLKT D + G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKTSVADFLRLTAPYGWTLTPI-PWCEEGFWIERDDEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|B1J0Q3|RSMF_ECOLC Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmF PE=3 SV=2
Length = 479
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|A8A133|RSMF_ECOHS Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O9:H4 (strain HS) GN=rsmF PE=3 SV=2
Length = 479
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|P76273|RSMF_ECOLI Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12) GN=rsmF PE=1 SV=2
Length = 479
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|B1XHA3|RSMF_ECODH Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / DH10B) GN=rsmF PE=3 SV=1
Length = 479
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|C4ZZJ2|RSMF_ECOBW Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmF PE=3 SV=1
Length = 479
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|B1LD37|RSMF_ECOSM Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDDEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|Q321Y0|RSMF_SHIBS Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmF PE=3 SV=2
Length = 479
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|B2U477|RSMF_SHIB3 Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rsmF PE=3
SV=2
Length = 479
Score = 37.7 bits (86), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|Q3Z2H4|RSMF_SHISS Ribosomal RNA small subunit methyltransferase F OS=Shigella sonnei
(strain Ss046) GN=rsmF PE=3 SV=2
Length = 479
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|B7NS84|RSMF_ECO7I Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|Q83RJ3|RSMF_SHIFL Putative ribosomal RNA small subunit methyltransferase F
OS=Shigella flexneri GN=rsmF PE=5 SV=2
Length = 479
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|Q0T529|RSMF_SHIF8 Ribosomal RNA small subunit methyltransferase F OS=Shigella
flexneri serotype 5b (strain 8401) GN=rsmF PE=3 SV=2
Length = 479
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D Q G L PI W + G I +P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNEDALP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA+ + +R
Sbjct: 86 LGSTTEHLSGLFYIQEASSMLPVAALFADGNAPQR 120
>sp|A6TB06|RSMF_KLEP7 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rsmF PE=3 SV=2
Length = 477
Score = 37.4 bits (85), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 91 SETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVPIGAT 145
+ QRPL +IR NTLK D + G L P+ W G I + +P+G+T
Sbjct: 31 AACQRPLRRSIRVNTLKISVDDFLSLVAPYGWQLAPV-PWCAEGFWIEREDDDALPLGST 89
Query: 146 PEYLG-------AALMKNTGVLFANDVSKER 169
E+L A+ M LFA++ ER
Sbjct: 90 AEHLSGLFYIQEASSMLPVAALFADNRQPER 120
>sp|Q0HVX2|RSMF_SHESR Ribosomal RNA small subunit methyltransferase F OS=Shewanella sp.
(strain MR-7) GN=rsmF PE=3 SV=2
Length = 482
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 57/157 (36%), Gaps = 46/157 (29%)
Query: 68 NEFLMERIMQIFPLDELMSFLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPI 125
N+ + I Q P M A+ RPL +IR NTLK D Q ++ +G +PI
Sbjct: 5 NQNFINTIAQELPAHLSMDDFIAA-CSRPLRRSIRVNTLKISSEDFKQLMLPKGWTFEPI 63
Query: 126 GKWSKVGLVI-YNSTVPIGATPEYLG---------------------------------- 150
W + G I Y+ +G E++
Sbjct: 64 -PWCEDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPNADWQCVLDLASAP 122
Query: 151 -------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180
AALM N G+L AN+ S R K + N R+
Sbjct: 123 GSKTTQMAALMNNQGLLVANEYSASRVKVLHANVLRM 159
>sp|B1KQN1|RSMF_SHEWM Ribosomal RNA small subunit methyltransferase F OS=Shewanella
woodyi (strain ATCC 51908 / MS32) GN=rsmF PE=3 SV=1
Length = 478
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 48/144 (33%)
Query: 81 LDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGL-VIYNST 139
+D+ +S+ +S+ RP +IR NTLK + + +G LDPI W G V ++
Sbjct: 22 MDDFISY--SSKPLRP-SIRINTLKISSDEFVTLMAAKGWTLDPI-PWCSDGFWVALDNE 77
Query: 140 VPIGATPEYLG-------------------------------------------AALMKN 156
+ +G T E++ A+LM N
Sbjct: 78 IQLGNTIEHIQGLFYIQEASSMLPPTALFDGLDNSSEYTILDMASAPGSKTTQMASLMDN 137
Query: 157 TGVLFANDVSKERSKAIVGNFHRL 180
G+L AN+ S R K + N R+
Sbjct: 138 KGLLVANEYSSSRVKVLHANVQRM 161
>sp|A1RIZ0|RSMF_SHESW Ribosomal RNA small subunit methyltransferase F OS=Shewanella sp.
(strain W3-18-1) GN=rsmF PE=3 SV=2
Length = 486
Score = 37.0 bits (84), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 59/163 (36%), Gaps = 53/163 (32%)
Query: 68 NEFLMERIMQIFPLDELMS-FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDP 124
N+ ++ I Q P M F+ A + RPL +IR NTLK D + +G DP
Sbjct: 5 NQNFIDTITQELPAHLSMDDFIAACD--RPLRRSIRVNTLKISADDFKTLMQPKGWTFDP 62
Query: 125 IGKWSKVGLVI-YNSTVPIGATPEYLG--------------------------------- 150
I W K G I Y+ +G E++
Sbjct: 63 I-PWCKDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTPSAKWQCVL 121
Query: 151 -------------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180
AALM N+G+L AN+ S R K + N R+
Sbjct: 122 DLASAPGSKTTQIAALMHNSGLLIANEYSASRVKVLHANVLRM 164
>sp|A4Y7J8|RSMF_SHEPC Ribosomal RNA small subunit methyltransferase F OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=rsmF PE=3
SV=2
Length = 486
Score = 37.0 bits (84), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 59/163 (36%), Gaps = 53/163 (32%)
Query: 68 NEFLMERIMQIFPLDELMS-FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDP 124
N+ ++ I Q P M F+ A + RPL +IR NTLK D + +G DP
Sbjct: 5 NQNFIDTITQELPAHLSMDDFIAACD--RPLRRSIRVNTLKISADDFKTLMQPKGWTFDP 62
Query: 125 IGKWSKVGLVI-YNSTVPIGATPEYLG--------------------------------- 150
I W K G I Y+ +G E++
Sbjct: 63 I-PWCKDGFWISYDEEEQLGNALEHIQGLFYIQEASSMLPPTALFTPSAFTPSAKWQCVL 121
Query: 151 -------------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180
AALM N+G+L AN+ S R K + N R+
Sbjct: 122 DLASAPGSKTTQIAALMHNSGLLIANEYSASRVKVLHANVLRM 164
>sp|B2VJ83|RSMF_ERWT9 Ribosomal RNA small subunit methyltransferase F OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=rsmF PE=3
SV=1
Length = 478
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 55/154 (35%), Gaps = 46/154 (29%)
Query: 71 LMERIMQIFP-LDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWS 129
+E++ Q+ P DE F+ +S+ ++R NTLK D + L PI W
Sbjct: 13 FVEQMQQLLPDADEFQRFITSSQLPLRRSLRVNTLKISVDDFLTLVEPYQWALTPI-PWC 71
Query: 130 KVGLVIYN---STVPIGATPEYLG------------------------------------ 150
+ G I T+P+G+T E+L
Sbjct: 72 QEGFWISRDDADTLPLGSTAEHLAGLFYIQEASSMLPVSALFDGGDMPQRVMDMAAAPGS 131
Query: 151 -----AALMKNTGVLFANDVSKERSKAIVGNFHR 179
AA M N G + AN+ S R K + N R
Sbjct: 132 KTTQIAAHMGNRGAILANEYSASRVKVLHANLSR 165
>sp|A8AFL6|RSMF_CITK8 Ribosomal RNA small subunit methyltransferase F OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=rsmF PE=3 SV=1
Length = 479
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 87 FLEASETQRPL--TIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIY---NSTVP 141
FL A QRPL +IR NTLK D G +L P+ W + G I ++P
Sbjct: 29 FLAA--CQRPLRRSIRVNTLKISVTDFLALTAPYGWSLTPV-PWCEEGFWIERDDEESLP 85
Query: 142 IGATPEYLG-------AALMKNTGVLFANDVSKER 169
+G+T E+L A+ M LFA + ER
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFAEGNTPER 120
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,494,883
Number of Sequences: 539616
Number of extensions: 2338246
Number of successful extensions: 6781
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 6743
Number of HSP's gapped (non-prelim): 117
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)