Query psy7376
Match_columns 180
No_of_seqs 195 out of 1640
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 16:41:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yxl_A PH0851 protein, 450AA l 99.9 5.9E-27 2E-31 204.0 15.4 160 11-180 101-307 (450)
2 1sqg_A SUN protein, FMU protei 99.9 3.9E-26 1.3E-30 197.6 10.4 159 11-180 93-293 (429)
3 1ixk_A Methyltransferase; open 99.9 6.8E-23 2.3E-27 170.8 12.0 122 56-179 5-165 (315)
4 2frx_A Hypothetical protein YE 99.8 2.1E-19 7E-24 157.7 8.7 116 63-179 4-164 (479)
5 3m6w_A RRNA methylase; rRNA me 99.8 1.5E-18 5.1E-23 151.7 8.9 109 66-180 1-149 (464)
6 3m4x_A NOL1/NOP2/SUN family pr 99.7 2.4E-17 8.2E-22 143.8 6.6 105 65-180 6-153 (456)
7 2b9e_A NOL1/NOP2/SUN domain fa 99.3 5.2E-12 1.8E-16 105.0 9.8 87 92-180 7-150 (309)
8 3ajd_A Putative methyltransfer 99.3 1.8E-11 6E-16 99.5 10.5 91 88-180 2-131 (274)
9 4fzv_A Putative methyltransfer 98.4 3.8E-07 1.3E-11 77.1 6.6 48 71-120 23-70 (359)
10 1tzv_A NUSB protein, N utiliza 97.0 0.00015 5.1E-09 53.2 1.0 36 11-46 98-136 (142)
11 3d3b_A Protein NUSB, N utiliza 96.9 0.0002 6.8E-09 52.5 0.7 34 11-44 100-136 (141)
12 1eyv_A NUSB protein, N-utilizi 96.9 0.00019 6.6E-09 53.6 0.6 38 11-48 106-146 (156)
13 3r2d_A Protein NUSB, N utiliza 96.9 0.00029 9.8E-09 52.2 1.3 37 11-47 99-138 (149)
14 1nv8_A HEMK protein; class I a 88.9 0.57 2E-05 37.5 5.2 107 69-179 21-168 (284)
15 3id6_C Fibrillarin-like rRNA/T 86.7 0.34 1.2E-05 38.0 2.5 37 141-177 82-121 (232)
16 4df3_A Fibrillarin-like rRNA/T 84.9 0.5 1.7E-05 37.1 2.6 38 142-179 84-124 (233)
17 3dr5_A Putative O-methyltransf 75.5 3.2 0.00011 31.6 4.4 38 142-179 63-103 (221)
18 3tfw_A Putative O-methyltransf 71.8 3.2 0.00011 32.0 3.6 36 144-179 72-110 (248)
19 3u81_A Catechol O-methyltransf 70.6 3.8 0.00013 30.7 3.7 29 151-179 77-105 (221)
20 3c3y_A Pfomt, O-methyltransfer 66.7 4.7 0.00016 30.8 3.5 36 144-179 79-117 (237)
21 3duw_A OMT, O-methyltransferas 66.5 5.6 0.00019 29.6 3.8 29 151-179 77-105 (223)
22 3kr9_A SAM-dependent methyltra 66.0 3.9 0.00013 31.8 2.9 38 142-179 22-61 (225)
23 1i1n_A Protein-L-isoaspartate 64.7 4.1 0.00014 30.5 2.7 36 144-179 86-124 (226)
24 2qm3_A Predicted methyltransfe 62.9 4.7 0.00016 33.2 3.0 39 30-80 42-80 (373)
25 1nt2_A Fibrillarin-like PRE-rR 62.6 5.7 0.0002 29.9 3.2 36 142-178 64-102 (210)
26 3axs_A Probable N(2),N(2)-dime 62.5 5.1 0.00018 33.7 3.2 29 151-179 71-99 (392)
27 3lec_A NADB-rossmann superfami 61.2 5.5 0.00019 31.0 2.9 38 142-179 28-67 (230)
28 3tr6_A O-methyltransferase; ce 61.1 8.1 0.00028 28.7 3.8 29 151-179 83-111 (225)
29 1sui_A Caffeoyl-COA O-methyltr 60.7 7.1 0.00024 30.1 3.5 38 142-179 86-126 (247)
30 3eey_A Putative rRNA methylase 60.0 6 0.00021 28.7 2.9 29 151-179 41-69 (197)
31 3g89_A Ribosomal RNA small sub 59.8 5.2 0.00018 31.0 2.6 24 156-179 103-126 (249)
32 3gnl_A Uncharacterized protein 57.5 6.7 0.00023 30.8 2.9 38 142-179 28-67 (244)
33 3k6r_A Putative transferase PH 56.2 8.3 0.00028 30.8 3.3 24 156-179 147-170 (278)
34 3mti_A RRNA methylase; SAM-dep 56.2 7.9 0.00027 27.8 2.9 37 142-178 29-65 (185)
35 3c3p_A Methyltransferase; NP_9 55.2 11 0.00038 27.7 3.7 37 143-179 64-103 (210)
36 2dul_A N(2),N(2)-dimethylguano 54.4 8.5 0.00029 32.0 3.2 28 151-179 66-93 (378)
37 3fzg_A 16S rRNA methylase; met 53.9 11 0.00036 28.9 3.3 25 155-179 71-95 (200)
38 3e05_A Precorrin-6Y C5,15-meth 51.3 12 0.0004 27.4 3.2 25 155-179 62-86 (204)
39 1o54_A SAM-dependent O-methylt 51.0 13 0.00045 28.7 3.6 29 151-179 131-159 (277)
40 3ntv_A MW1564 protein; rossman 50.3 8.8 0.0003 29.0 2.4 24 156-179 94-117 (232)
41 3cbg_A O-methyltransferase; cy 49.5 15 0.00051 27.7 3.7 28 151-178 91-118 (232)
42 3hm2_A Precorrin-6Y C5,15-meth 49.0 14 0.00049 25.9 3.3 24 156-179 48-71 (178)
43 3r3h_A O-methyltransferase, SA 48.5 3.4 0.00012 31.9 -0.2 29 151-179 79-107 (242)
44 3mb5_A SAM-dependent methyltra 48.1 11 0.00039 28.5 2.8 28 151-178 112-139 (255)
45 2avd_A Catechol-O-methyltransf 48.1 16 0.00054 27.1 3.6 28 151-178 88-115 (229)
46 3njr_A Precorrin-6Y methylase; 47.1 14 0.00049 27.3 3.2 23 157-179 77-99 (204)
47 3lcv_B Sisomicin-gentamicin re 46.3 14 0.00047 29.8 3.0 25 156-180 155-179 (281)
48 1yb2_A Hypothetical protein TA 45.1 14 0.00049 28.6 3.0 29 151-179 129-157 (275)
49 1g8a_A Fibrillarin-like PRE-rR 45.1 15 0.00052 27.2 3.0 29 151-179 92-120 (227)
50 1xdz_A Methyltransferase GIDB; 44.6 16 0.00056 27.5 3.2 25 155-179 92-116 (240)
51 2pbf_A Protein-L-isoaspartate 43.9 19 0.00065 26.6 3.4 29 151-179 99-131 (227)
52 2pwy_A TRNA (adenine-N(1)-)-me 42.1 16 0.00054 27.6 2.7 28 151-178 115-142 (258)
53 2b3t_A Protein methyltransfera 41.8 18 0.00063 27.9 3.1 24 156-179 132-155 (276)
54 1i9g_A Hypothetical protein RV 40.5 17 0.00059 27.9 2.8 28 151-178 118-145 (280)
55 3gdh_A Trimethylguanosine synt 40.5 15 0.0005 27.5 2.3 22 158-179 101-122 (241)
56 1fbn_A MJ fibrillarin homologu 40.1 25 0.00084 26.3 3.5 28 151-179 93-120 (230)
57 3cvo_A Methyltransferase-like 39.5 21 0.00073 27.1 3.0 23 157-179 51-73 (202)
58 2gpy_A O-methyltransferase; st 39.2 24 0.00083 26.2 3.4 28 151-179 73-100 (233)
59 2hnk_A SAM-dependent O-methylt 38.8 26 0.0009 26.3 3.5 28 151-178 79-106 (239)
60 3p9n_A Possible methyltransfer 38.7 24 0.00084 25.3 3.2 24 156-179 66-89 (189)
61 1jyo_E Protein tyrosine phosph 37.7 28 0.00096 23.7 3.0 32 70-101 48-81 (105)
62 2fca_A TRNA (guanine-N(7)-)-me 37.1 27 0.00092 25.9 3.3 24 156-179 61-84 (213)
63 1jsx_A Glucose-inhibited divis 36.7 28 0.00095 25.2 3.3 24 156-179 88-111 (207)
64 4gek_A TRNA (CMO5U34)-methyltr 36.3 38 0.0013 26.2 4.2 28 151-178 89-117 (261)
65 2qm3_A Predicted methyltransfe 36.1 21 0.00073 29.2 2.8 25 155-179 193-217 (373)
66 3lbf_A Protein-L-isoaspartate 35.9 27 0.00091 25.4 3.1 23 157-179 99-121 (210)
67 2ift_A Putative methylase HI07 35.8 27 0.00092 25.6 3.1 23 157-179 76-98 (201)
68 1r18_A Protein-L-isoaspartate( 35.6 28 0.00095 25.8 3.2 23 157-179 114-136 (227)
69 2b25_A Hypothetical protein; s 35.4 22 0.00074 28.4 2.7 29 151-179 124-152 (336)
70 3frh_A 16S rRNA methylase; met 35.0 27 0.00092 27.6 3.0 24 156-179 125-148 (253)
71 1yzh_A TRNA (guanine-N(7)-)-me 34.7 30 0.001 25.4 3.2 24 156-179 64-87 (214)
72 2esr_A Methyltransferase; stru 34.3 36 0.0012 23.9 3.5 24 156-179 53-76 (177)
73 3evz_A Methyltransferase; NYSG 34.2 31 0.0011 25.4 3.2 23 157-179 79-101 (230)
74 2fpo_A Methylase YHHF; structu 33.2 31 0.0011 25.2 3.1 22 158-179 78-99 (202)
75 2vdv_E TRNA (guanine-N(7)-)-me 32.1 33 0.0011 25.9 3.2 23 156-178 72-94 (246)
76 3a27_A TYW2, uncharacterized p 31.8 33 0.0011 26.6 3.1 23 157-179 143-165 (272)
77 2yxe_A Protein-L-isoaspartate 30.9 31 0.0011 25.1 2.7 28 151-178 96-123 (215)
78 1wy7_A Hypothetical protein PH 30.6 43 0.0015 24.1 3.5 23 157-179 72-94 (207)
79 3dxy_A TRNA (guanine-N(7)-)-me 30.2 39 0.0013 25.3 3.2 25 155-179 56-80 (218)
80 3ll7_A Putative methyltransfer 30.0 24 0.00082 29.8 2.1 37 143-179 101-137 (410)
81 3tm4_A TRNA (guanine N2-)-meth 29.8 37 0.0013 27.7 3.2 29 151-179 235-263 (373)
82 1m6y_A S-adenosyl-methyltransf 29.6 42 0.0014 26.9 3.4 28 151-179 45-72 (301)
83 2yxd_A Probable cobalt-precorr 29.2 46 0.0016 23.1 3.3 23 156-178 56-78 (183)
84 3fpf_A Mtnas, putative unchara 28.8 39 0.0013 27.2 3.1 23 157-179 146-168 (298)
85 1o9g_A RRNA methyltransferase; 28.8 34 0.0012 25.8 2.7 24 156-179 76-99 (250)
86 2fhp_A Methylase, putative; al 28.3 45 0.0016 23.3 3.2 23 156-178 66-88 (187)
87 2yvl_A TRMI protein, hypotheti 27.7 46 0.0016 24.7 3.2 22 157-178 113-134 (248)
88 3tqs_A Ribosomal RNA small sub 27.4 38 0.0013 26.4 2.7 26 153-178 47-72 (255)
89 2ipx_A RRNA 2'-O-methyltransfe 27.3 40 0.0014 25.0 2.8 28 151-178 96-123 (233)
90 3grz_A L11 mtase, ribosomal pr 26.8 52 0.0018 23.7 3.3 23 156-178 82-104 (205)
91 3tma_A Methyltransferase; thum 26.5 44 0.0015 26.9 3.1 24 156-179 227-250 (354)
92 3lho_A Putative hydrolase; str 26.5 1.5E+02 0.005 23.6 6.0 38 87-124 156-195 (267)
93 1l3i_A Precorrin-6Y methyltran 26.3 50 0.0017 23.0 3.1 21 158-178 56-76 (192)
94 2h00_A Methyltransferase 10 do 25.8 50 0.0017 24.8 3.2 23 157-179 89-111 (254)
95 3lpm_A Putative methyltransfer 25.8 54 0.0018 24.9 3.4 22 158-179 73-94 (259)
96 4dzr_A Protein-(glutamine-N5) 25.7 28 0.00096 25.0 1.6 24 156-179 53-76 (215)
97 3ckk_A TRNA (guanine-N(7)-)-me 25.0 42 0.0014 25.4 2.6 23 156-178 69-91 (235)
98 2h1r_A Dimethyladenosine trans 24.1 40 0.0014 26.6 2.4 23 156-178 63-85 (299)
99 2ozv_A Hypothetical protein AT 23.7 55 0.0019 25.0 3.1 24 156-179 59-82 (260)
100 1cn3_F Fragment of coat protei 23.3 25 0.00086 17.7 0.6 14 67-80 16-29 (29)
101 3iv6_A Putative Zn-dependent a 22.8 39 0.0013 26.5 2.0 38 142-179 52-89 (261)
102 3dh0_A SAM dependent methyltra 22.8 68 0.0023 23.2 3.3 28 151-178 56-83 (219)
103 2euc_A Hypothetical protein YF 22.3 29 0.00098 24.0 1.0 29 1-40 56-84 (130)
104 3c0k_A UPF0064 protein YCCW; P 21.9 57 0.0019 26.7 2.9 23 157-179 243-265 (396)
105 2yx1_A Hypothetical protein MJ 21.8 64 0.0022 25.8 3.2 26 154-179 213-238 (336)
106 4dmg_A Putative uncharacterize 21.6 52 0.0018 27.3 2.7 22 158-179 237-258 (393)
107 2frn_A Hypothetical protein PH 21.5 62 0.0021 25.1 2.9 21 159-179 150-170 (278)
108 3v97_A Ribosomal RNA large sub 21.5 51 0.0017 29.7 2.7 25 155-179 560-584 (703)
109 3lcc_A Putative methyl chlorid 20.9 67 0.0023 23.6 2.9 35 144-178 75-109 (235)
110 3ocj_A Putative exported prote 20.8 75 0.0026 24.7 3.4 38 142-179 125-165 (305)
111 2igt_A SAM dependent methyltra 20.8 62 0.0021 26.1 2.9 21 159-179 177-197 (332)
112 1dl5_A Protein-L-isoaspartate 20.5 71 0.0024 25.2 3.2 29 151-179 94-122 (317)
113 2oyr_A UPF0341 protein YHIQ; a 20.5 66 0.0022 25.1 2.9 23 157-179 110-132 (258)
114 2as0_A Hypothetical protein PH 20.4 70 0.0024 26.1 3.2 24 156-179 239-262 (396)
No 1
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.95 E-value=5.9e-27 Score=203.98 Aligned_cols=160 Identities=24% Similarity=0.280 Sum_probs=138.8
Q ss_pred CCChHHhh----ccCChhHHH---HHHhHHHHHHhhhhhccccccchhhhhhHHhhhhhhhhcCcHHHHHHHHHhCCHHH
Q psy7376 11 FPSEEEAD----KVLSIPDVE---QRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDE 83 (180)
Q Consensus 11 ~~~~~~~~----~~~~~~~~~---~~~~~VNaVLR~~~r~~~~~~~~~~~~~~~~~~lsi~yS~P~Wlv~~~~~~~G~e~ 83 (180)
.|...-++ |.|+++|.. ...+|||||||++.|.+.... +....++++||||.||+++|.+.|| ++
T Consensus 101 ip~~~ain~~~~eaVelak~~~~~~~~~fvNgvL~~~~r~~~~~~-------~~~~~~~~~~~~P~w~~~~~~~~~g-~~ 172 (450)
T 2yxl_A 101 DPSSQTIKNLRWKASDFISSRTHPYVGMYFWDLLDKIFEYKPNPK-------NELEELEWKYLAPSWLIERVKGILG-DE 172 (450)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCCCCCC-------SHHHHHHHHHTSCHHHHHHHHHHHG-GG
T ss_pred CCchHHhccccHHHHHHHHhccccccccchHHHHHHHhhcccccc-------chhhhhhhHhcCcHHHHHHHHHHhh-HH
Confidence 57777778 899999986 357999999999999752211 2345689999999999999999999 88
Q ss_pred HHHHHHHhC-CCCCceEEEcCCCCCHHHHHHHHHHCCCceeecCCCCcceEEEeccCCCCCCCHHHHH------------
Q psy7376 84 LMSFLEASE-TQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLG------------ 150 (180)
Q Consensus 84 ~~~il~a~~-~~pp~~lRvN~~k~~~~~l~~~L~~~Gi~~~~~~~~~~~~l~l~~~~~~l~~~p~f~~------------ 150 (180)
+++++++++ ++||+++|||++|++++++++.|++.|+.+.++ +++|+++.+... .++..+|+|..
T Consensus 173 ~~~~~~a~~~~~~~~~~Rvn~~k~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~G~~~~qd~~s~l 250 (450)
T 2yxl_A 173 TEDFFRSVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVRS-ERVPTILKIKGP-YNFDTSSAFNEGKIIVQEEASAV 250 (450)
T ss_dssp HHHHHHHHHCCCCEEEEEECTTTCCHHHHHHHHHHTTCCEEEC-SSCTTEEEEESC-CCTTSCHHHHTTSEEECCHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEcCCCCCHHHHHHHHHhCCccceec-CccCceEEeCCC-CCcccCchhhCceEEecCchhHH
Confidence 999999999 999999999999999999999999999999887 899999999643 47888898876
Q ss_pred ---------------------------HhcCCCCceEEEEcCChHHHHHHHHhhccC
Q psy7376 151 ---------------------------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180 (180)
Q Consensus 151 ---------------------------A~lm~~~G~v~A~Di~~~Rl~~l~~n~~RL 180 (180)
|+++.+.|+|+|+|++++|++.+++|++|+
T Consensus 251 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~ 307 (450)
T 2yxl_A 251 ASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM 307 (450)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc
Confidence 666767799999999999999999998864
No 2
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=99.93 E-value=3.9e-26 Score=197.57 Aligned_cols=159 Identities=16% Similarity=0.235 Sum_probs=133.6
Q ss_pred CCChHHhhccCChhHHHH---HHhHHHHHHhhhhhccccccchhhhhhHHhhhhhhhhcCcHHHHHHHHHhCCHHHHHHH
Q psy7376 11 FPSEEEADKVLSIPDVEQ---RIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDELMSF 87 (180)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~---~~~~VNaVLR~~~r~~~~~~~~~~~~~~~~~~lsi~yS~P~Wlv~~~~~~~G~e~~~~i 87 (180)
.|....+++.|+++|.++ ..||||||||++.|..+.+.. .....++ +||+|.||+++|.+.|| ++++++
T Consensus 93 ~p~~~~ineaVelak~~~~~~~~~fvN~vL~~~~r~~~~~~~------~~~~~~~-~~~~p~w~~~~~~~~~g-~~~~~~ 164 (429)
T 1sqg_A 93 IPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQEELLA------EFNASDA-RYLHPSWLLKRLQKAYP-EQWQSI 164 (429)
T ss_dssp SCHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHH------HHTTSGG-GGCSCHHHHHHHHHHCT-TTHHHH
T ss_pred CCchHhhHHHHHHHHHhccccchhhHHHHHHHHHHhhhcccc------cchhhhh-hhcCcHHHHHHHHHHhh-HHHHHH
Confidence 477778889999999764 589999999999987544311 0112345 89999999999999999 789999
Q ss_pred HHHhCCCCCceEEEcCCCCCHHHHHHHHHHCCCceeecCCCCcceEEEeccCCCCCCCHHHHH-----------------
Q psy7376 88 LEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLG----------------- 150 (180)
Q Consensus 88 l~a~~~~pp~~lRvN~~k~~~~~l~~~L~~~Gi~~~~~~~~~~~~l~l~~~~~~l~~~p~f~~----------------- 150 (180)
+++++++||+++|||++|++++++.+.|.+.|+...+. +++|+++++... .++..+|+|..
T Consensus 165 ~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~G~~~~qd~~s~~~~~~l 242 (429)
T 1sqg_A 165 VEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPH-ADYPDAVRLETP-APVHALPGFEDGWVTVQDASAQGCMTWL 242 (429)
T ss_dssp HHHHTSCCCEEEEECTTTCCHHHHHHHHHHTTCCEECC-TTCTTEEEESSC-CCGGGSTTGGGTSEEECCHHHHTHHHHH
T ss_pred HHhCCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeec-CCCCCEEEECCC-CCcccChHHhCCCeEeeCHHHHHHHHHc
Confidence 99999999999999999999999999999999999887 899999998753 46667777765
Q ss_pred ----------------------HhcCCCCceEEEEcCChHHHHHHHHhhccC
Q psy7376 151 ----------------------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180 (180)
Q Consensus 151 ----------------------A~lm~~~G~v~A~Di~~~Rl~~l~~n~~RL 180 (180)
|+++.+ |.|+|+|+++.|++.+++|++|+
T Consensus 243 ~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~ 293 (429)
T 1sqg_A 243 APQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRL 293 (429)
T ss_dssp CCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHT
T ss_pred CCCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHc
Confidence 555554 89999999999999999998864
No 3
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.89 E-value=6.8e-23 Score=170.81 Aligned_cols=122 Identities=30% Similarity=0.523 Sum_probs=110.4
Q ss_pred HHhhhhhhhhcCcHHHHHHHHHhCCHHHHHHHHHHhCCCCCceEEEcCCCCCHHHHHHHHHHCCCceeecCCCCcceEEE
Q psy7376 56 LLLKDLCTYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVI 135 (180)
Q Consensus 56 ~~~~~lsi~yS~P~Wlv~~~~~~~G~e~~~~il~a~~~~pp~~lRvN~~k~~~~~l~~~L~~~Gi~~~~~~~~~~~~l~l 135 (180)
++.++++++||||.||+++|.+.|| +++++++++++++||+++|||++|++++++.+.|++.|+.+.+. +|+|+|+++
T Consensus 5 ~~~~~l~~~~~~P~w~~~~~~~~~g-~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~ 82 (315)
T 1ixk_A 5 PSMLDKLLRLGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRV-PWAKEGFCL 82 (315)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHT-THHHHHHHHTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEE-TTEEEEEEE
T ss_pred cHHHHHHHHhCCcHHHHHHHHHHcc-HHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeEC-CCCCceEEE
Confidence 5678899999999999999999999 88999999999999999999999999999999999999999887 899999988
Q ss_pred eccCCCCCCCHHHHH---------------------------------------HhcCCCCceEEEEcCChHHHHHHHHh
Q psy7376 136 YNSTVPIGATPEYLG---------------------------------------AALMKNTGVLFANDVSKERSKAIVGN 176 (180)
Q Consensus 136 ~~~~~~l~~~p~f~~---------------------------------------A~lm~~~G~v~A~Di~~~Rl~~l~~n 176 (180)
..++.++..+++|.. |+++.+.|+|+|+|++++|++.+++|
T Consensus 83 ~~~~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~ 162 (315)
T 1ixk_A 83 TREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLN 162 (315)
T ss_dssp EECSSCGGGSHHHHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHH
T ss_pred eCCCCCcccChhHhcceEEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHH
Confidence 654345778888876 66677789999999999999999999
Q ss_pred hcc
Q psy7376 177 FHR 179 (180)
Q Consensus 177 ~~R 179 (180)
++|
T Consensus 163 ~~~ 165 (315)
T 1ixk_A 163 LSR 165 (315)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 4
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=99.78 E-value=2.1e-19 Score=157.75 Aligned_cols=116 Identities=30% Similarity=0.485 Sum_probs=95.8
Q ss_pred hhhcCcHHHHHHHHHhCCHH-HHHHHHHHhCCCCCceEEEcCCCCCHHHHHHHHHHCCCceeecCCCCcceEEEeccC--
Q psy7376 63 TYFSYNEFLMERIMQIFPLD-ELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNST-- 139 (180)
Q Consensus 63 i~yS~P~Wlv~~~~~~~G~e-~~~~il~a~~~~pp~~lRvN~~k~~~~~l~~~L~~~Gi~~~~~~~~~~~~l~l~~~~-- 139 (180)
..|++|.||+++|.+.||++ ++++|++++++++|++|||||+|++++++.+.|++.|+.++++ +|+|+|+++....
T Consensus 4 ~~~~~P~~~~~~~~~~~g~~~~~~~~~~a~~~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~ 82 (479)
T 2frx_A 4 HTVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPI-PWCEEGFWIERDNED 82 (479)
T ss_dssp ---CCCHHHHHHHGGGCC----CHHHHHHHTSCCCCCEEECTTTCCHHHHHHHHGGGCCCCCEE-TTEEEEEC-------
T ss_pred ccccCcHHHHHHHHHHcCccHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHcCCceeec-CCCCceEEEecCccc
Confidence 35799999999999999976 5799999999999999999999999999999999999999887 8999999885321
Q ss_pred -CCCCCCHHHHH-----------------------------------------HhcCCCCceEEEEcCChHHHHHHHHhh
Q psy7376 140 -VPIGATPEYLG-----------------------------------------AALMKNTGVLFANDVSKERSKAIVGNF 177 (180)
Q Consensus 140 -~~l~~~p~f~~-----------------------------------------A~lm~~~G~v~A~Di~~~Rl~~l~~n~ 177 (180)
..+..+|+|.. |++|.+.|.|+|+|+|++|++.+++|+
T Consensus 83 ~~~~~~~~~~~~G~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~ 162 (479)
T 2frx_A 83 ALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANI 162 (479)
T ss_dssp --CGGGSHHHHTTSEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHH
T ss_pred ccCcccChHHhCcEEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence 14566777765 677777899999999999999999999
Q ss_pred cc
Q psy7376 178 HR 179 (180)
Q Consensus 178 ~R 179 (180)
+|
T Consensus 163 ~r 164 (479)
T 2frx_A 163 SR 164 (479)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 5
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=99.75 E-value=1.5e-18 Score=151.66 Aligned_cols=109 Identities=27% Similarity=0.450 Sum_probs=97.4
Q ss_pred cCcHHHHHHHHHhCCHHHHHHHHHHhCCC-CCceEEEcCCCCCHHHHHHHHHHCCCceeecCCCCcceEEEeccCCCCCC
Q psy7376 66 SYNEFLMERIMQIFPLDELMSFLEASETQ-RPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGA 144 (180)
Q Consensus 66 S~P~Wlv~~~~~~~G~e~~~~il~a~~~~-pp~~lRvN~~k~~~~~l~~~L~~~Gi~~~~~~~~~~~~l~l~~~~~~l~~ 144 (180)
.+|.||+++|.+.|| +++++|+++++++ ||++|||||+|++++++.+.| |+.++++ +|+|+|+++... ..+..
T Consensus 1 ~lP~w~~~~~~~~~g-~e~~~~l~a~~~~~~~~~lRvN~lk~~~~~~~~~l---~~~~~~~-~~~~~g~~l~~~-~~~~~ 74 (464)
T 3m6w_A 1 MLPKAFLSRMAELLG-EEFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRIS---PWPLRPI-PWCQEGFYYPEE-ARPGP 74 (464)
T ss_dssp CCCHHHHHHHHHHHG-GGHHHHHHHHHTSCCCCEEEECTTTCCHHHHHHHC---SSCCEEE-TTEEEEEECCTT-CCCSS
T ss_pred CCcHHHHHHHHHHHH-HHHHHHHHHcCCCCCCeEEEEcCCCCCHHHHHHHc---CCCceec-CCCCceEEECCC-CCccc
Confidence 389999999999999 5699999999999 999999999999999998876 7778887 899999998754 35788
Q ss_pred CHHHHH---------------------------------------HhcCCCCceEEEEcCChHHHHHHHHhhccC
Q psy7376 145 TPEYLG---------------------------------------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180 (180)
Q Consensus 145 ~p~f~~---------------------------------------A~lm~~~G~v~A~Di~~~Rl~~l~~n~~RL 180 (180)
+|+|.+ |++|.+.|.|+|+|+|+.|++.+++|++|+
T Consensus 75 ~~~~~~G~~~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~ 149 (464)
T 3m6w_A 75 HPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW 149 (464)
T ss_dssp SHHHHTTSEEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH
T ss_pred ChHHhCCeEEEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 898886 777888899999999999999999999873
No 6
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=99.68 E-value=2.4e-17 Score=143.81 Aligned_cols=105 Identities=23% Similarity=0.309 Sum_probs=89.2
Q ss_pred hcCcHHHHHHHHHhCCHHHHHHHHHHhCCCCC-ceEEEcCCCCCHHHHHHHHHHCCCcee---ecCCCCcceEEEeccCC
Q psy7376 65 FSYNEFLMERIMQIFPLDELMSFLEASETQRP-LTIRTNTLKTRRRDLAQALVNRGVNLD---PIGKWSKVGLVIYNSTV 140 (180)
Q Consensus 65 yS~P~Wlv~~~~~~~G~e~~~~il~a~~~~pp-~~lRvN~~k~~~~~l~~~L~~~Gi~~~---~~~~~~~~~l~l~~~~~ 140 (180)
+++|.||+++|.+.|| +++++|+++++++|| ++|||||+|+ +++.+.+ |+.++ ++ +|+|+|++ +.
T Consensus 6 ~~~P~w~~~~~~~~~g-~e~~~~~~a~~~~~~~~~lRvN~lk~--~~~~~~~---~~~~~~~~~~-~~~~~~~~--~~-- 74 (456)
T 3m4x_A 6 TTLPQQFIKKYRLLLG-EEASDFFSALEQGSVKKGFRWNPLKP--AGLDMVQ---TYHSEELQPA-PYSNEGFL--GT-- 74 (456)
T ss_dssp -CCCHHHHHHHHHHHG-GGHHHHHHHHHHCCCCCEEECCTTST--THHHHHH---HHTCSSCCBC-TTCTTEEE--SC--
T ss_pred hhChHHHHHHHHHHhC-HHHHHHHHHcCCCCCCcEEEEcCccH--HHHHHhc---CCcccccCCC-CCCcceEE--cC--
Confidence 6899999999999999 569999999999999 9999999998 5666543 45555 76 89999998 32
Q ss_pred CCCCCHHHHH---------------------------------------HhcCCCCceEEEEcCChHHHHHHHHhhccC
Q psy7376 141 PIGATPEYLG---------------------------------------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180 (180)
Q Consensus 141 ~l~~~p~f~~---------------------------------------A~lm~~~G~v~A~Di~~~Rl~~l~~n~~RL 180 (180)
.+..+|+|.+ |++|.+.|.|+|+|++++|++.+++|++|+
T Consensus 75 ~~~~~~~~~~G~~~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~ 153 (456)
T 3m4x_A 75 VNGKSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW 153 (456)
T ss_dssp CCTTSHHHHTTSCEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCChHHhCCcEEEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 4578888886 677788899999999999999999999873
No 7
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=99.32 E-value=5.2e-12 Score=104.96 Aligned_cols=87 Identities=29% Similarity=0.345 Sum_probs=72.6
Q ss_pred CCCCCceEEEcCCCCCHHHHHHHHHHCCCceeecCCC------------------CcceEEEeccCCCCCCCHHHHH---
Q psy7376 92 ETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKW------------------SKVGLVIYNSTVPIGATPEYLG--- 150 (180)
Q Consensus 92 ~~~pp~~lRvN~~k~~~~~l~~~L~~~Gi~~~~~~~~------------------~~~~l~l~~~~~~l~~~p~f~~--- 150 (180)
..++|+++||||+|++++++++.|++.|+.+.+. ++ +|+++.+.+. .++..+|+|++
T Consensus 7 ~~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~-~~~~~~~~~~~G~~ 84 (309)
T 2b9e_A 7 ASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGR-ASSLDDLRALKGKHFLLDPLMPELLVFPAQ-TDLHEHPLYRAGHL 84 (309)
T ss_dssp --CCCEEEEECTTTCCHHHHHHHHHHTTCEEEEE-CSSHHHHHTCCTTEEEECSSSTTEEEECTT-CCCTTSHHHHTTSE
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeec-cccccccccccccccccccCCCceEEeCCC-CCcccChHHHCCeE
Confidence 4678999999999999999999999999988764 33 4667777543 47888899887
Q ss_pred ------------------------------------HhcCCCCceEEEEcCChHHHHHHHHhhccC
Q psy7376 151 ------------------------------------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180 (180)
Q Consensus 151 ------------------------------------A~lm~~~G~v~A~Di~~~Rl~~l~~n~~RL 180 (180)
|++|.+.|+|+|+|++++|++.+++|++|+
T Consensus 85 ~~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~ 150 (309)
T 2b9e_A 85 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA 150 (309)
T ss_dssp EECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred EEECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 667778899999999999999999999874
No 8
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=99.28 E-value=1.8e-11 Score=99.52 Aligned_cols=91 Identities=37% Similarity=0.534 Sum_probs=72.6
Q ss_pred HHHhCCCCCceEEEcCCCCCHHHHHHHHHHCCCceeecCCCCcceEEEeccCCCCCCCHHHHH-----------------
Q psy7376 88 LEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLG----------------- 150 (180)
Q Consensus 88 l~a~~~~pp~~lRvN~~k~~~~~l~~~L~~~Gi~~~~~~~~~~~~l~l~~~~~~l~~~p~f~~----------------- 150 (180)
+.++++++|+++|||++|++++++.+.|++.|+.+.+ +|+|+++.+...+.++..+|+|..
T Consensus 2 m~~~~~~~~~~~rvn~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~l~~~~l 79 (274)
T 3ajd_A 2 MIVYKGEKMQFIRVNTLKINPEVLKKRLENKGVVLEK--TFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVL 79 (274)
T ss_dssp -------CCEEEEECTTTCCHHHHHHHHHTTTCEEEE--CSSTTEEEEEECSSCTTSSHHHHTTSEEECCSGGGHHHHHH
T ss_pred hhhhCCCCCeEEEEeCCCCCHHHHHHHHHHCCCeecC--CCCCceEEEecCCCCcccChhhhCCeEEEeCHHHHHHHHHh
Confidence 3556789999999999999999999999999998887 689999998433346788888876
Q ss_pred ----------------------HhcCCCCceEEEEcCChHHHHHHHHhhccC
Q psy7376 151 ----------------------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180 (180)
Q Consensus 151 ----------------------A~lm~~~G~v~A~Di~~~Rl~~l~~n~~RL 180 (180)
|+++.+.|+|+|+|+++.+++.+++|++|+
T Consensus 80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~ 131 (274)
T 3ajd_A 80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM 131 (274)
T ss_dssp CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHh
Confidence 666667799999999999999999998763
No 9
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=98.41 E-value=3.8e-07 Score=77.13 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=41.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHhCCCCCceEEEcCCCCCHHHHHHHHHHCCC
Q psy7376 71 LMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGV 120 (180)
Q Consensus 71 lv~~~~~~~G~e~~~~il~a~~~~pp~~lRvN~~k~~~~~l~~~L~~~Gi 120 (180)
|-+++..+|| +.|..+..+++.+++..+|||+.+ +.+++.+.|+..|.
T Consensus 23 Fd~~Y~~~~G-~~W~~~r~aL~~~~~~~a~vN~f~-~~~~~~~~L~~~~~ 70 (359)
T 4fzv_A 23 FDMTYSVQFG-DLWPSIRVSLLSEQKYGALVNNFA-AWDHVSAKLEQLSA 70 (359)
T ss_dssp HHHHHHHHHG-GGHHHHHHHHTSCCCCEEEECTTS-CHHHHHHHHHHTTC
T ss_pred HHHHHHHHhh-hhhHHHHHHHcCcchhEEEeccCC-ChHHHHHHHHhccC
Confidence 5677788899 689999999999999999999985 56888889988774
No 10
>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*
Probab=97.02 E-value=0.00015 Score=53.22 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=30.0
Q ss_pred CCChHHhhccCChhHHH---HHHhHHHHHHhhhhhcccc
Q psy7376 11 FPSEEEADKVLSIPDVE---QRIKDVLMVLGNFKQYRDP 46 (180)
Q Consensus 11 ~~~~~~~~~~~~~~~~~---~~~~~VNaVLR~~~r~~~~ 46 (180)
.|..--++|.|+++|.+ ...||||||||++.|....
T Consensus 98 iP~~vaInEaVelaK~~~~~~~~~fVNgVL~~i~r~~~~ 136 (142)
T 1tzv_A 98 IPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIAKEHAP 136 (142)
T ss_dssp SCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCchhHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHhcc
Confidence 46677788999999997 3689999999999987544
No 11
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A
Probab=96.89 E-value=0.0002 Score=52.47 Aligned_cols=34 Identities=15% Similarity=0.038 Sum_probs=28.8
Q ss_pred CCChHHhhccCChhHHHH---HHhHHHHHHhhhhhcc
Q psy7376 11 FPSEEEADKVLSIPDVEQ---RIKDVLMVLGNFKQYR 44 (180)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~---~~~~VNaVLR~~~r~~ 44 (180)
.|..--++|.|+++|.++ ..||||||||++.|..
T Consensus 100 iP~~vaInEaVelaK~~~~~~~~~fVNgVLr~i~r~~ 136 (141)
T 3d3b_A 100 VPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVI 136 (141)
T ss_dssp SCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 477777899999999973 5899999999998863
No 12
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1
Probab=96.89 E-value=0.00019 Score=53.59 Aligned_cols=38 Identities=18% Similarity=0.111 Sum_probs=26.8
Q ss_pred CCChHHhhccCChhHHHH---HHhHHHHHHhhhhhcccccc
Q psy7376 11 FPSEEEADKVLSIPDVEQ---RIKDVLMVLGNFKQYRDPAR 48 (180)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~---~~~~VNaVLR~~~r~~~~~~ 48 (180)
.|..--++|.|+++|.++ ..||||||||++.|..+.+.
T Consensus 106 iP~~v~InEaVelak~~~~~~~~~fVNgVLr~i~r~~~~l~ 146 (156)
T 1eyv_A 106 VPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVMLVTPQLR 146 (156)
T ss_dssp SCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHC-------
T ss_pred CCchhHHHHHHHHHHHhCCCccccchHHHHHHHHHhHHhhc
Confidence 466777889999999973 57999999999999876653
No 13
>3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* 4eya_A
Probab=96.86 E-value=0.00029 Score=52.24 Aligned_cols=37 Identities=11% Similarity=-0.137 Sum_probs=29.2
Q ss_pred CCChHHhhccCChhHHH---HHHhHHHHHHhhhhhccccc
Q psy7376 11 FPSEEEADKVLSIPDVE---QRIKDVLMVLGNFKQYRDPA 47 (180)
Q Consensus 11 ~~~~~~~~~~~~~~~~~---~~~~~VNaVLR~~~r~~~~~ 47 (180)
.|..--++|.|+++|.+ ...||||||||++.|+....
T Consensus 99 iP~~vaInEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~ 138 (149)
T 3r2d_A 99 KEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITS 138 (149)
T ss_dssp SCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHC---
T ss_pred CCCeehHHHHHHHHHHhCCCCccccchHHhhHHHHhhccc
Confidence 46677788999999987 36899999999999986553
No 14
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=88.94 E-value=0.57 Score=37.46 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=60.5
Q ss_pred HHHHHHHHHhC--CHHHHHHHHHHhCCCCCceEEEcC--C-CCCHHHHHHHHH--HCCCceeec-C--CCCcceEEEecc
Q psy7376 69 EFLMERIMQIF--PLDELMSFLEASETQRPLTIRTNT--L-KTRRRDLAQALV--NRGVNLDPI-G--KWSKVGLVIYNS 138 (180)
Q Consensus 69 ~Wlv~~~~~~~--G~e~~~~il~a~~~~pp~~lRvN~--~-k~~~~~l~~~L~--~~Gi~~~~~-~--~~~~~~l~l~~~ 138 (180)
.|..++|.+.+ +..+++.|+......++.+++.+. . ..+.+.+.+.+. ..|.+.... + ++ .++.+.-+
T Consensus 21 ~~~~~~l~~~~~~~~~~a~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~p~~yi~g~~~f--~~~~~~v~ 98 (284)
T 1nv8_A 21 RDCSGKLEGVTETSVLEVLLIVSRVLGIRKEDLFLKDLGVSPTEEKRILELVEKRASGYPLHYILGEKEF--MGLSFLVE 98 (284)
T ss_dssp HHHHHHTTTTCSCHHHHHHHHHHHHHTCCGGGGCCSSCCCCHHHHHHHHHHHHHHHTTCCHHHHHTEEEE--TTEEEECC
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHcCCCHHHHHhccccccccCHHHHHHHHHHHHCCCCCeEEeeeeEE--CCeEEEeC
Confidence 46777776665 456788889988888888888876 2 233334443332 234333211 0 11 12222211
Q ss_pred CCCCCCCH----------------------------HHHH---HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 139 TVPIGATP----------------------------EYLG---AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 139 ~~~l~~~p----------------------------~f~~---A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+..+..-| |... +.. +.++|+++|+|+..++..++|+++
T Consensus 99 ~~~lipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~ 168 (284)
T 1nv8_A 99 EGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAER 168 (284)
T ss_dssp TTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCceecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHH
Confidence 11111111 1110 333 567999999999999999999875
No 15
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=86.70 E-value=0.34 Score=38.00 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=27.7
Q ss_pred CCCCCHHHHH---HhcCCCCceEEEEcCChHHHHHHHHhh
Q psy7376 141 PIGATPEYLG---AALMKNTGVLFANDVSKERSKAIVGNF 177 (180)
Q Consensus 141 ~l~~~p~f~~---A~lm~~~G~v~A~Di~~~Rl~~l~~n~ 177 (180)
+++..+|+.. |++++++|+|+|+|+++.+++.+.+.+
T Consensus 82 DlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a 121 (232)
T 3id6_C 82 YLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVA 121 (232)
T ss_dssp EETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHH
T ss_pred EEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHh
Confidence 3456677654 677888999999999999986654443
No 16
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=84.90 E-value=0.5 Score=37.13 Aligned_cols=38 Identities=5% Similarity=0.223 Sum_probs=30.4
Q ss_pred CCCCHHHHH---HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 142 IGATPEYLG---AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 142 l~~~p~f~~---A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
++...|+.. |...+++|+|+|+|+++..++.+++++++
T Consensus 84 lG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~ 124 (233)
T 4df3_A 84 LGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD 124 (233)
T ss_dssp ETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT
T ss_pred ecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh
Confidence 344555544 77788999999999999999999988764
No 17
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=75.53 E-value=3.2 Score=31.60 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=30.3
Q ss_pred CCCCHHHHH---HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 142 IGATPEYLG---AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 142 l~~~p~f~~---A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
++...|+.. |..+.+.|+|+++|+++..++..++|+++
T Consensus 63 iG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 103 (221)
T 3dr5_A 63 ITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFRE 103 (221)
T ss_dssp ESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHH
T ss_pred EcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 455677765 55566678999999999999999999865
No 18
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=71.82 E-value=3.2 Score=31.99 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=27.5
Q ss_pred CCHHHHH---HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 144 ATPEYLG---AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 144 ~~p~f~~---A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
...|+.. |..+.+.++|+++|+++..++..++++++
T Consensus 72 ~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 110 (248)
T 3tfw_A 72 TLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQL 110 (248)
T ss_dssp CTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 3345443 55555578999999999999999998864
No 19
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=70.57 E-value=3.8 Score=30.73 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=24.4
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
|..+.+.++|+++|+++..++..++|+++
T Consensus 77 a~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 105 (221)
T 3u81_A 77 ARLLQPGARLLTMEINPDCAAITQQMLNF 105 (221)
T ss_dssp HTTSCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEEeCChHHHHHHHHHHHH
Confidence 55555678999999999999999998764
No 20
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=66.74 E-value=4.7 Score=30.84 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=27.7
Q ss_pred CCHHHHH---HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 144 ATPEYLG---AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 144 ~~p~f~~---A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
...|+.. |..+.+.|+|+++|+++..++..++|+++
T Consensus 79 ~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 117 (237)
T 3c3y_A 79 VFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRK 117 (237)
T ss_dssp CTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 3455543 55565578999999999999999998764
No 21
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=66.51 E-value=5.6 Score=29.60 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=24.2
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
|+.+.+.++|+++|+++..++..++++++
T Consensus 77 a~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 105 (223)
T 3duw_A 77 ARGLSSGGRVVTLEASEKHADIARSNIER 105 (223)
T ss_dssp HTTCCSSCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 55555478999999999999999998864
No 22
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=66.01 E-value=3.9 Score=31.76 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=28.3
Q ss_pred CCCCHHHHH--HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 142 IGATPEYLG--AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 142 l~~~p~f~~--A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
++.-.|+.. +....+.++|+|+|+++.-++..++|+++
T Consensus 22 IGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~ 61 (225)
T 3kr9_A 22 VGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEA 61 (225)
T ss_dssp ETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 344455544 33345567999999999999999999875
No 23
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=64.66 E-value=4.1 Score=30.45 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=27.1
Q ss_pred CCHHHHH---HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 144 ATPEYLG---AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 144 ~~p~f~~---A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
..+|+.. ++.+++.++|+++|+++..++..++++++
T Consensus 86 ~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 124 (226)
T 1i1n_A 86 SGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 124 (226)
T ss_dssp CTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 3345443 55556668999999999999999988754
No 24
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=62.93 E-value=4.7 Score=33.22 Aligned_cols=39 Identities=13% Similarity=-0.008 Sum_probs=30.2
Q ss_pred HhHHHHHHhhhhhccccccchhhhhhHHhhhhhhhhcCcHHHHHHHHHhCC
Q psy7376 30 IKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFP 80 (180)
Q Consensus 30 ~~~VNaVLR~~~r~~~~~~~~~~~~~~~~~~lsi~yS~P~Wlv~~~~~~~G 80 (180)
.+++|+|||.+ +. +. ...+++...++|.|.++.|.+.++
T Consensus 42 ~~~~~~ll~~L-~~--~~---------t~~eLa~~~g~~~~~v~~~L~~l~ 80 (373)
T 2qm3_A 42 ERSVENVLSAV-LA--SD---------DIWRIVDLSEEPLPLVVAILESLN 80 (373)
T ss_dssp HHHHHHHHHHH-HH--CS---------CHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cC--CC---------CHHHHHHHhCCChHHHHHHHHHHh
Confidence 68999999999 42 22 124567889999999999998764
No 25
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=62.61 E-value=5.7 Score=29.87 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=25.0
Q ss_pred CCCCHHHHH---HhcCCCCceEEEEcCChHHHHHHHHhhc
Q psy7376 142 IGATPEYLG---AALMKNTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 142 l~~~p~f~~---A~lm~~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
++..+|+.. |...+ .|+|+|+|+|+..++.+.+.++
T Consensus 64 lGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~ 102 (210)
T 1nt2_A 64 LGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVR 102 (210)
T ss_dssp ETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHH
T ss_pred ECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHh
Confidence 345555543 45555 6899999999998877666554
No 26
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=62.53 E-value=5.1 Score=33.71 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=24.1
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
|..+.+.+.|+|+|+++..++.+++|+++
T Consensus 71 a~~~~ga~~V~avDi~~~av~~~~~N~~~ 99 (392)
T 3axs_A 71 LLETSCVEKAYANDISSKAIEIMKENFKL 99 (392)
T ss_dssp HHHCSCEEEEEEECSCHHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 44444447999999999999999999975
No 27
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=61.17 E-value=5.5 Score=31.04 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=28.1
Q ss_pred CCCCHHHHH--HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 142 IGATPEYLG--AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 142 l~~~p~f~~--A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
++.-.||.. +...++.++|+|+|+++.-++..++|+++
T Consensus 28 IGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~ 67 (230)
T 3lec_A 28 VGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE 67 (230)
T ss_dssp ETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 344455554 23334567999999999999999999875
No 28
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=61.14 E-value=8.1 Score=28.68 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=24.0
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
|..+.+.++|+++|+++..++..++++++
T Consensus 83 a~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 111 (225)
T 3tr6_A 83 GLALPKDGTLITCDVDEKSTALAKEYWEK 111 (225)
T ss_dssp HTTCCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 55555578999999999999999998754
No 29
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=60.72 E-value=7.1 Score=30.11 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=28.9
Q ss_pred CCCCHHHHH---HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 142 IGATPEYLG---AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 142 l~~~p~f~~---A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
++...||.. |..+.+.|+|+++|+++..++..++++++
T Consensus 86 iG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 126 (247)
T 1sui_A 86 IGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKK 126 (247)
T ss_dssp ECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred eCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 344566654 55555568999999999999999998764
No 30
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=60.02 E-value=6 Score=28.72 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=23.8
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+..+++.|+|+++|+++..++..++++++
T Consensus 41 ~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 69 (197)
T 3eey_A 41 ASLVGENGRVFGFDIQDKAIANTTKKLTD 69 (197)
T ss_dssp HHHHCTTCEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 45555668999999999999999998753
No 31
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=59.79 E-value=5.2 Score=31.03 Aligned_cols=24 Identities=8% Similarity=0.029 Sum_probs=21.8
Q ss_pred CCceEEEEcCChHHHHHHHHhhcc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.++|+++|+++.+++..++|+++
T Consensus 103 ~~~~v~~vD~s~~~~~~a~~~~~~ 126 (249)
T 3g89_A 103 PELELVLVDATRKKVAFVERAIEV 126 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHH
Confidence 568999999999999999999865
No 32
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=57.51 E-value=6.7 Score=30.83 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=28.0
Q ss_pred CCCCHHHHH--HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 142 IGATPEYLG--AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 142 l~~~p~f~~--A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
++.-.||.. +....+.++|+|+|+++.-++..++|+++
T Consensus 28 IGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~ 67 (244)
T 3gnl_A 28 IGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRS 67 (244)
T ss_dssp ETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 444555554 23334567999999999999999999875
No 33
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=56.24 E-value=8.3 Score=30.80 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.4
Q ss_pred CCceEEEEcCChHHHHHHHHhhcc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.++|+|+|+++.-++.+++|+++
T Consensus 147 g~~~V~avD~np~a~~~~~~N~~~ 170 (278)
T 3k6r_A 147 GKAKVIAIEKDPYTFKFLVENIHL 170 (278)
T ss_dssp TCCEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCHHHHHHHHHHHHH
Confidence 345899999999999999999975
No 34
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=56.19 E-value=7.9 Score=27.76 Aligned_cols=37 Identities=14% Similarity=-0.008 Sum_probs=25.9
Q ss_pred CCCCHHHHHHhcCCCCceEEEEcCChHHHHHHHHhhc
Q psy7376 142 IGATPEYLGAALMKNTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 142 l~~~p~f~~A~lm~~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
++.-.|+....+....++|+++|+|+..++..+++++
T Consensus 29 iGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~ 65 (185)
T 3mti_A 29 ATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLS 65 (185)
T ss_dssp SCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHH
Confidence 3445555442222226799999999999999998875
No 35
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=55.20 E-value=11 Score=27.73 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=27.2
Q ss_pred CCCHHHHH---HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 143 GATPEYLG---AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 143 ~~~p~f~~---A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+...|+.. +..+.+.++|+++|+++..++..++|+++
T Consensus 64 G~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 103 (210)
T 3c3p_A 64 GDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHD 103 (210)
T ss_dssp SCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 44455544 44444468999999999999999988753
No 36
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=54.41 E-value=8.5 Score=32.04 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=22.9
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
|..++ .+.|+++|+++..++.+++|+++
T Consensus 66 a~~~~-~~~V~avDi~~~av~~a~~N~~~ 93 (378)
T 2dul_A 66 ALETP-AEEVWLNDISEDAYELMKRNVML 93 (378)
T ss_dssp HHHSS-CSEEEEEESCHHHHHHHHHHHHH
T ss_pred HHhCC-CCeEEEEECCHHHHHHHHHHHHH
Confidence 44443 35799999999999999999975
No 37
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=53.87 E-value=11 Score=28.95 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=22.4
Q ss_pred CCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 155 KNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 155 ~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.+..+++|+|+|+.-++..++|+++
T Consensus 71 ~p~a~~~A~Di~~~~leiar~~~~~ 95 (200)
T 3fzg_A 71 NEKIIYHAYDIDRAEIAFLSSIIGK 95 (200)
T ss_dssp SCCCEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 4566999999999999999999876
No 38
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=51.33 E-value=12 Score=27.39 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.6
Q ss_pred CCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 155 KNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 155 ~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.+.++|+++|+++..++..++|+++
T Consensus 62 ~~~~~v~~vD~s~~~~~~a~~~~~~ 86 (204)
T 3e05_A 62 MPNGRIFALERNPQYLGFIRDNLKK 86 (204)
T ss_dssp CTTSEEEEEECCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 3568999999999999999998753
No 39
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=50.97 E-value=13 Score=28.75 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=24.3
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+..+.+.++|+++|+++..++..++|+++
T Consensus 131 a~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 159 (277)
T 1o54_A 131 ARAVGSSGKVFAYEKREEFAKLAESNLTK 159 (277)
T ss_dssp HHHTTTTCEEEEECCCHHHHHHHHHHHHH
T ss_pred HHHhCCCcEEEEEECCHHHHHHHHHHHHH
Confidence 55556678999999999999999998753
No 40
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=50.33 E-value=8.8 Score=29.01 Aligned_cols=24 Identities=4% Similarity=-0.096 Sum_probs=21.4
Q ss_pred CCceEEEEcCChHHHHHHHHhhcc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.++|+++|+++..++..++++++
T Consensus 94 ~~~~v~~vD~~~~~~~~a~~~~~~ 117 (232)
T 3ntv_A 94 DDIHVTTIERNETMIQYAKQNLAT 117 (232)
T ss_dssp TTCEEEEEECCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHH
Confidence 578999999999999999998764
No 41
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=49.52 E-value=15 Score=27.72 Aligned_cols=28 Identities=14% Similarity=0.168 Sum_probs=23.0
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
|..+.+.|+|+++|+++..++..+++++
T Consensus 91 a~~~~~~~~v~~iD~~~~~~~~a~~~~~ 118 (232)
T 3cbg_A 91 ALQLPPDGQIIACDQDPNATAIAKKYWQ 118 (232)
T ss_dssp HTTSCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEEECCHHHHHHHHHHHH
Confidence 5555546899999999999999998864
No 42
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=48.96 E-value=14 Score=25.91 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.0
Q ss_pred CCceEEEEcCChHHHHHHHHhhcc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.++|+++|+++..++..++++++
T Consensus 48 ~~~~v~~vD~~~~~~~~a~~~~~~ 71 (178)
T 3hm2_A 48 PQTTAVCFEISEERRERILSNAIN 71 (178)
T ss_dssp SSEEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHH
Confidence 467999999999999999998754
No 43
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=48.53 E-value=3.4 Score=31.89 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=23.6
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
|..+.+.|+|+++|+++..++..++|+++
T Consensus 79 a~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 107 (242)
T 3r3h_A 79 SLALPDDGQVITCDINEGWTKHAHPYWRE 107 (242)
T ss_dssp HHTSCTTCEEEEEECCCSSCCCSHHHHHH
T ss_pred HHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 66666678999999999988888887754
No 44
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=48.11 E-value=11 Score=28.50 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=23.8
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
+..+.+.++|+++|+++..++..++|++
T Consensus 112 ~~~~~~~~~v~~~D~~~~~~~~a~~~~~ 139 (255)
T 3mb5_A 112 ANIVGPEGRVVSYEIREDFAKLAWENIK 139 (255)
T ss_dssp HHHHCTTSEEEEECSCHHHHHHHHHHHH
T ss_pred HHHhCCCeEEEEEecCHHHHHHHHHHHH
Confidence 4555667899999999999999999875
No 45
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=48.08 E-value=16 Score=27.09 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=23.1
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
|..+.+.++|+++|+++..++..+++++
T Consensus 88 a~~~~~~~~v~~vD~~~~~~~~a~~~~~ 115 (229)
T 2avd_A 88 ALALPADGRVVTCEVDAQPPELGRPLWR 115 (229)
T ss_dssp HTTSCTTCEEEEEESCSHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEEECCHHHHHHHHHHHH
Confidence 4545446899999999999999998875
No 46
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=47.09 E-value=14 Score=27.28 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.7
Q ss_pred CceEEEEcCChHHHHHHHHhhcc
Q psy7376 157 TGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 157 ~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.++|+++|+++..++..++|+++
T Consensus 77 ~~~v~~vD~s~~~~~~a~~~~~~ 99 (204)
T 3njr_A 77 GGRAITIEPRADRIENIQKNIDT 99 (204)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH
Confidence 57999999999999999998754
No 47
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=46.31 E-value=14 Score=29.79 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.7
Q ss_pred CCceEEEEcCChHHHHHHHHhhccC
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFHRL 180 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~RL 180 (180)
+..+++|+||++.-++.+++|+.++
T Consensus 155 p~a~y~a~DId~~~le~a~~~l~~~ 179 (281)
T 3lcv_B 155 AETVYIASDIDARLVGFVDEALTRL 179 (281)
T ss_dssp TTCEEEEEESBHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 6779999999999999999999763
No 48
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=45.12 E-value=14 Score=28.56 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=23.6
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+..+.+.++|+++|+++..++..++|+++
T Consensus 129 a~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 157 (275)
T 1yb2_A 129 LYALNGKGTLTVVERDEDNLKKAMDNLSE 157 (275)
T ss_dssp HHHHTTSSEEEEECSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCEEEEEECCHHHHHHHHHHHHh
Confidence 44445568999999999999999998764
No 49
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=45.06 E-value=15 Score=27.23 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=23.6
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+...++.|+|+++|+++..++.+++++++
T Consensus 92 a~~~~~~~~v~~vD~s~~~~~~~~~~~~~ 120 (227)
T 1g8a_A 92 SDIVGWEGKIFGIEFSPRVLRELVPIVEE 120 (227)
T ss_dssp HHHHCTTSEEEEEESCHHHHHHHHHHHSS
T ss_pred HHHhCCCeEEEEEECCHHHHHHHHHHHhc
Confidence 55555568999999999999999888764
No 50
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=44.61 E-value=16 Score=27.53 Aligned_cols=25 Identities=8% Similarity=-0.213 Sum_probs=21.5
Q ss_pred CCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 155 KNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 155 ~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.+.++|+++|+++..++.+++|+++
T Consensus 92 ~~~~~v~~vD~s~~~~~~a~~~~~~ 116 (240)
T 1xdz_A 92 FPHLHVTIVDSLNKRITFLEKLSEA 116 (240)
T ss_dssp CTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 3567999999999999999998764
No 51
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=43.93 E-value=19 Score=26.65 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=23.5
Q ss_pred HhcCC----CCceEEEEcCChHHHHHHHHhhcc
Q psy7376 151 AALMK----NTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 151 A~lm~----~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
++... +.++|+++|+++..++..++++++
T Consensus 99 a~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 131 (227)
T 2pbf_A 99 AIKMNVLENKNSYVIGLERVKDLVNFSLENIKR 131 (227)
T ss_dssp HHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 55554 567999999999999999988653
No 52
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=42.13 E-value=16 Score=27.56 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=23.3
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
+..+++.++|+++|+++..++..+++++
T Consensus 115 ~~~~~~~~~v~~~D~~~~~~~~a~~~~~ 142 (258)
T 2pwy_A 115 ARAVGEKGLVESYEARPHHLAQAERNVR 142 (258)
T ss_dssp HHHHCTTSEEEEEESCHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 4444567899999999999999998874
No 53
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=41.79 E-value=18 Score=27.90 Aligned_cols=24 Identities=13% Similarity=0.001 Sum_probs=21.3
Q ss_pred CCceEEEEcCChHHHHHHHHhhcc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.++|+++|+|+..++..++|+++
T Consensus 132 ~~~~v~~vD~s~~~l~~a~~n~~~ 155 (276)
T 2b3t_A 132 PDCEIIAVDRMPDAVSLAQRNAQH 155 (276)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHH
Confidence 457999999999999999999864
No 54
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=40.51 E-value=17 Score=27.87 Aligned_cols=28 Identities=7% Similarity=0.122 Sum_probs=23.3
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
+..+.+.++|+++|+++..++..++|++
T Consensus 118 ~~~~~~~~~v~~vD~~~~~~~~a~~~~~ 145 (280)
T 1i9g_A 118 LRAVGPAGQVISYEQRADHAEHARRNVS 145 (280)
T ss_dssp HHHHCTTSEEEEECSCHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 4445567899999999999999998874
No 55
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=40.49 E-value=15 Score=27.55 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=20.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcc
Q psy7376 158 GVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 158 G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
++|+++|+++..++..++|+++
T Consensus 101 ~~v~~vD~s~~~~~~a~~~~~~ 122 (241)
T 3gdh_A 101 MRVIAIDIDPVKIALARNNAEV 122 (241)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHH
Confidence 7999999999999999998754
No 56
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=40.10 E-value=25 Score=26.30 Aligned_cols=28 Identities=11% Similarity=0.306 Sum_probs=22.7
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
|...+ .++|+++|+++..++.+++++++
T Consensus 93 a~~~~-~~~v~gvD~s~~~~~~a~~~~~~ 120 (230)
T 1fbn_A 93 ADIAD-KGIVYAIEYAPRIMRELLDACAE 120 (230)
T ss_dssp HHHTT-TSEEEEEESCHHHHHHHHHHTTT
T ss_pred HHHcC-CcEEEEEECCHHHHHHHHHHhhc
Confidence 44444 68999999999999999988754
No 57
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=39.47 E-value=21 Score=27.06 Aligned_cols=23 Identities=0% Similarity=-0.012 Sum_probs=21.3
Q ss_pred CceEEEEcCChHHHHHHHHhhcc
Q psy7376 157 TGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 157 ~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.|+|+++|.++.+.+..++|+++
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~ 73 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAA 73 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH
Confidence 68999999999999999999875
No 58
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=39.17 E-value=24 Score=26.24 Aligned_cols=28 Identities=7% Similarity=0.106 Sum_probs=22.7
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
|..+ +.++|+++|+++..++..++++++
T Consensus 73 a~~~-~~~~v~~vD~~~~~~~~a~~~~~~ 100 (233)
T 2gpy_A 73 AQAL-PEATIVSIERDERRYEEAHKHVKA 100 (233)
T ss_dssp HHHC-TTCEEEEECCCHHHHHHHHHHHHH
T ss_pred HHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 4444 357999999999999999998754
No 59
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=38.83 E-value=26 Score=26.26 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=23.0
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
|..+.+.++|+++|+++..++..+++++
T Consensus 79 a~~~~~~~~v~~vD~~~~~~~~a~~~~~ 106 (239)
T 2hnk_A 79 ASALPEDGKILCCDVSEEWTNVARKYWK 106 (239)
T ss_dssp HHHSCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEEECCHHHHHHHHHHHH
Confidence 5555446899999999999999998874
No 60
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=38.67 E-value=24 Score=25.26 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=20.7
Q ss_pred CCceEEEEcCChHHHHHHHHhhcc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.++|+++|+++.-++..++|+++
T Consensus 66 ~~~~v~~vD~~~~~~~~a~~~~~~ 89 (189)
T 3p9n_A 66 GAASVLFVESDQRSAAVIARNIEA 89 (189)
T ss_dssp TCSEEEEEECCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH
Confidence 445899999999999999998754
No 61
>1jyo_E Protein tyrosine phosphatase SPTP; bacterial pathogenesis, infectious disease, virulence factor, type III secretion, chaperone, unfolded; 1.90A {Salmonella typhimurium} SCOP: d.184.1.2
Probab=37.69 E-value=28 Score=23.72 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCHHHHHHH--HHHhCCCCCceEEE
Q psy7376 70 FLMERIMQIFPLDELMSF--LEASETQRPLTIRT 101 (180)
Q Consensus 70 Wlv~~~~~~~G~e~~~~i--l~a~~~~pp~~lRv 101 (180)
=|...+.+.||++.+.++ ...++...|++-|.
T Consensus 48 vFL~ALa~~YG~~~a~~~~~k~Disg~kPLT~R~ 81 (105)
T 1jyo_E 48 TFLHALTEKYGETAVNDALLMSRINMNKPLTQRL 81 (105)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHCCCCCGGGSC
T ss_pred HHHHHHHHHHhHHHHHHHHHHhcccCCCCccHHH
Confidence 367889999999988888 45566667887663
No 62
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=37.06 E-value=27 Score=25.91 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=20.9
Q ss_pred CCceEEEEcCChHHHHHHHHhhcc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.+.|+++|+|+..++..++++++
T Consensus 61 p~~~v~giD~s~~~l~~a~~~~~~ 84 (213)
T 2fca_A 61 PDINYIGIELFKSVIVTAVQKVKD 84 (213)
T ss_dssp TTSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEechHHHHHHHHHHHH
Confidence 567999999999999999988753
No 63
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=36.68 E-value=28 Score=25.15 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=20.9
Q ss_pred CCceEEEEcCChHHHHHHHHhhcc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.++++++|+++..++..++|+++
T Consensus 88 ~~~~v~~vD~s~~~~~~a~~~~~~ 111 (207)
T 1jsx_A 88 PEAHFTLLDSLGKRVRFLRQVQHE 111 (207)
T ss_dssp TTSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 457999999999999999998754
No 64
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=36.25 E-value=38 Score=26.24 Aligned_cols=28 Identities=11% Similarity=0.003 Sum_probs=21.8
Q ss_pred HhcCCC-CceEEEEcCChHHHHHHHHhhc
Q psy7376 151 AALMKN-TGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 151 A~lm~~-~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
+..... ..+|+++|+|+.-++..+++++
T Consensus 89 a~~~~~~~~~v~gvD~s~~ml~~A~~~~~ 117 (261)
T 4gek_A 89 RRNIHHDNCKIIAIDNSPAMIERCRRHID 117 (261)
T ss_dssp HHTCCSSSCEEEEEESCHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEEEEECCHHHHHHHHHHHH
Confidence 455443 4499999999999999888764
No 65
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=36.06 E-value=21 Score=29.16 Aligned_cols=25 Identities=12% Similarity=0.010 Sum_probs=21.8
Q ss_pred CCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 155 KNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 155 ~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.+.++|+++|+++..++..++|+++
T Consensus 193 ~~~~~v~~vDi~~~~l~~a~~~~~~ 217 (373)
T 2qm3_A 193 GLPKRIAVLDIDERLTKFIEKAANE 217 (373)
T ss_dssp TCCSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHH
Confidence 4457999999999999999999864
No 66
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=35.88 E-value=27 Score=25.39 Aligned_cols=23 Identities=4% Similarity=-0.114 Sum_probs=20.5
Q ss_pred CceEEEEcCChHHHHHHHHhhcc
Q psy7376 157 TGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 157 ~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.++|+++|+++..++..++++++
T Consensus 99 ~~~v~~vD~~~~~~~~a~~~~~~ 121 (210)
T 3lbf_A 99 VQHVCSVERIKGLQWQARRRLKN 121 (210)
T ss_dssp SSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCEEEEEecCHHHHHHHHHHHHH
Confidence 47999999999999999998764
No 67
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=35.79 E-value=27 Score=25.59 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=20.2
Q ss_pred CceEEEEcCChHHHHHHHHhhcc
Q psy7376 157 TGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 157 ~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.+.|+++|+|+.-++..++|+++
T Consensus 76 ~~~v~gvD~s~~~l~~a~~~~~~ 98 (201)
T 2ift_A 76 AKKVTFLELDKTVANQLKKNLQT 98 (201)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHH
Confidence 35899999999999999998753
No 68
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=35.62 E-value=28 Score=25.84 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=19.9
Q ss_pred CceEEEEcCChHHHHHHHHhhcc
Q psy7376 157 TGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 157 ~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.++|+++|+++..++..++++++
T Consensus 114 ~~~v~~vD~~~~~~~~a~~~~~~ 136 (227)
T 1r18_A 114 DTRIVGIEHQAELVRRSKANLNT 136 (227)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHH
T ss_pred cCEEEEEEcCHHHHHHHHHHHHh
Confidence 36999999999999999988653
No 69
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=35.44 E-value=22 Score=28.40 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=23.8
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+...++.++|+++|+++..++..++|+++
T Consensus 124 a~~~g~~~~v~~vD~~~~~~~~a~~~~~~ 152 (336)
T 2b25_A 124 SKAVGSQGRVISFEVRKDHHDLAKKNYKH 152 (336)
T ss_dssp HHHHCTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHhCCCceEEEEeCCHHHHHHHHHHHHH
Confidence 44445668999999999999999998763
No 70
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=34.97 E-value=27 Score=27.64 Aligned_cols=24 Identities=8% Similarity=0.120 Sum_probs=22.1
Q ss_pred CCceEEEEcCChHHHHHHHHhhcc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.++++|+||++.-++.+++++.+
T Consensus 125 ~~~~y~a~DId~~~i~~ar~~~~~ 148 (253)
T 3frh_A 125 GIASVWGCDIHQGLGDVITPFARE 148 (253)
T ss_dssp TCSEEEEEESBHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHh
Confidence 678999999999999999999865
No 71
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=34.66 E-value=30 Score=25.41 Aligned_cols=24 Identities=8% Similarity=-0.042 Sum_probs=20.8
Q ss_pred CCceEEEEcCChHHHHHHHHhhcc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.+.++++|+++..++..++|+++
T Consensus 64 p~~~v~gvD~s~~~l~~a~~~~~~ 87 (214)
T 1yzh_A 64 PDINYIGIDIQKSVLSYALDKVLE 87 (214)
T ss_dssp TTSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCHHHHHHHHHHHHH
Confidence 467999999999999999998753
No 72
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=34.29 E-value=36 Score=23.88 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=20.6
Q ss_pred CCceEEEEcCChHHHHHHHHhhcc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.++|+++|+++.-++..++|++.
T Consensus 53 ~~~~v~~vD~~~~~~~~a~~~~~~ 76 (177)
T 2esr_A 53 GMSAAVLVEKNRKAQAIIQDNIIM 76 (177)
T ss_dssp TCCEEEEECCCHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCHHHHHHHHHHHHH
Confidence 346999999999999999998753
No 73
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=34.22 E-value=31 Score=25.43 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=20.6
Q ss_pred CceEEEEcCChHHHHHHHHhhcc
Q psy7376 157 TGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 157 ~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.++|+++|+++..++..++|+++
T Consensus 79 ~~~v~~vD~s~~~~~~a~~~~~~ 101 (230)
T 3evz_A 79 NCKVTATEVDEEFFEYARRNIER 101 (230)
T ss_dssp CCEEEEEECCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHH
Confidence 47999999999999999999864
No 74
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=33.25 E-value=31 Score=25.23 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=19.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcc
Q psy7376 158 GVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 158 G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
++|+++|+++.-++..++|+++
T Consensus 78 ~~V~~vD~s~~~l~~a~~~~~~ 99 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLAT 99 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHH
Confidence 4899999999999999998853
No 75
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=32.14 E-value=33 Score=25.86 Aligned_cols=23 Identities=0% Similarity=0.120 Sum_probs=20.1
Q ss_pred CCceEEEEcCChHHHHHHHHhhc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
+.+.|+++|+|+..++..++|++
T Consensus 72 ~~~~v~gvD~s~~~l~~a~~~~~ 94 (246)
T 2vdv_E 72 PEDLILGMEIRVQVTNYVEDRII 94 (246)
T ss_dssp TTSEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCHHHHHHHHHHHH
Confidence 56799999999999999988765
No 76
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=31.77 E-value=33 Score=26.64 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=20.7
Q ss_pred CceEEEEcCChHHHHHHHHhhcc
Q psy7376 157 TGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 157 ~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.++|+++|+++.-++.+++|+++
T Consensus 143 ~~~V~~vD~s~~av~~a~~n~~~ 165 (272)
T 3a27_A 143 PKLVYAIEKNPTAYHYLCENIKL 165 (272)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH
Confidence 56999999999999999999864
No 77
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=30.87 E-value=31 Score=25.09 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=22.3
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
+...++.++|+++|+++..++..+++++
T Consensus 96 ~~~~~~~~~v~~vD~~~~~~~~a~~~~~ 123 (215)
T 2yxe_A 96 AEIVGEDGLVVSIERIPELAEKAERTLR 123 (215)
T ss_dssp HHHHCTTSEEEEEESCHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 4444455799999999999999988764
No 78
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=30.60 E-value=43 Score=24.14 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.2
Q ss_pred CceEEEEcCChHHHHHHHHhhcc
Q psy7376 157 TGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 157 ~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.+.|+++|+++..++..++|+++
T Consensus 72 ~~~v~~vD~~~~~~~~a~~~~~~ 94 (207)
T 1wy7_A 72 AKEVICVEVDKEAVDVLIENLGE 94 (207)
T ss_dssp CSEEEEEESCHHHHHHHHHHTGG
T ss_pred CCEEEEEECCHHHHHHHHHHHHH
Confidence 35899999999999999998763
No 79
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=30.21 E-value=39 Score=25.29 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=21.1
Q ss_pred CCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 155 KNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 155 ~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.+...|+++|+|+..+...++++++
T Consensus 56 ~p~~~v~giD~s~~~l~~a~~~~~~ 80 (218)
T 3dxy_A 56 RPEQDFLGIEVHSPGVGACLASAHE 80 (218)
T ss_dssp CTTSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEecHHHHHHHHHHHHH
Confidence 3567999999999999999888753
No 80
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=29.97 E-value=24 Score=29.82 Aligned_cols=37 Identities=16% Similarity=-0.071 Sum_probs=25.8
Q ss_pred CCCHHHHHHhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 143 GATPEYLGAALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 143 ~~~p~f~~A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+...|+....+....++|+++|+++..++..++|+++
T Consensus 101 gcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~ 137 (410)
T 3ll7_A 101 TGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPL 137 (410)
T ss_dssp SCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHH
Confidence 3344444322222346999999999999999999864
No 81
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=29.83 E-value=37 Score=27.74 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=23.5
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+..+...|+|+++|+++.-++..++|+++
T Consensus 235 ~a~~~~~~~v~g~Dis~~~l~~A~~n~~~ 263 (373)
T 3tm4_A 235 LALRRYSGEIIGIEKYRKHLIGAEMNALA 263 (373)
T ss_dssp HHHTTCCSCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 44444556999999999999999999864
No 82
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=29.60 E-value=42 Score=26.85 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=22.7
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
++... .++|+++|+++.-++..++|+++
T Consensus 45 a~~~~-~~~VigvD~d~~al~~A~~~~~~ 72 (301)
T 1m6y_A 45 LEHCP-GCRIIGIDVDSEVLRIAEEKLKE 72 (301)
T ss_dssp HHHCT-TCEEEEEESCHHHHHHHHHHTGG
T ss_pred HHHCC-CCEEEEEECCHHHHHHHHHHHHh
Confidence 44433 58999999999999999998764
No 83
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=29.24 E-value=46 Score=23.06 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=20.5
Q ss_pred CCceEEEEcCChHHHHHHHHhhc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
+.++++++|+++.-++..+++++
T Consensus 56 ~~~~v~~vD~~~~~~~~a~~~~~ 78 (183)
T 2yxd_A 56 RCKFVYAIDYLDGAIEVTKQNLA 78 (183)
T ss_dssp TSSEEEEEECSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCHHHHHHHHHHHH
Confidence 56799999999999999998875
No 84
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=28.78 E-value=39 Score=27.21 Aligned_cols=23 Identities=0% Similarity=-0.140 Sum_probs=20.5
Q ss_pred CceEEEEcCChHHHHHHHHhhcc
Q psy7376 157 TGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 157 ~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.++|+++|+++.+++..++++++
T Consensus 146 ga~V~gIDis~~~l~~Ar~~~~~ 168 (298)
T 3fpf_A 146 GMRVNVVEIEPDIAELSRKVIEG 168 (298)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHh
Confidence 57999999999999999998764
No 85
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=28.77 E-value=34 Score=25.79 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=20.6
Q ss_pred CCceEEEEcCChHHHHHHHHhhcc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.++|+++|+|+.-++..++|+.+
T Consensus 76 ~~~~v~gvDis~~~l~~A~~~~~~ 99 (250)
T 1o9g_A 76 SLRQVIASDVDPAPLELAAKNLAL 99 (250)
T ss_dssp GEEEEEEEESCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH
Confidence 346899999999999999988754
No 86
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=28.33 E-value=45 Score=23.35 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=19.9
Q ss_pred CCceEEEEcCChHHHHHHHHhhc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
+.++|+++|+++.-++..++|++
T Consensus 66 ~~~~v~~vD~~~~~~~~a~~~~~ 88 (187)
T 2fhp_A 66 GMDKSICIEKNFAALKVIKENIA 88 (187)
T ss_dssp TCSEEEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHH
Confidence 34699999999999999998874
No 87
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=27.73 E-value=46 Score=24.68 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.8
Q ss_pred CceEEEEcCChHHHHHHHHhhc
Q psy7376 157 TGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 157 ~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
.++|+++|+++.+++..++|++
T Consensus 113 ~~~v~~vD~~~~~~~~a~~~~~ 134 (248)
T 2yvl_A 113 AGEVWTFEAVEEFYKTAQKNLK 134 (248)
T ss_dssp SSEEEEECSCHHHHHHHHHHHH
T ss_pred CCEEEEEecCHHHHHHHHHHHH
Confidence 5799999999999999999874
No 88
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=27.44 E-value=38 Score=26.35 Aligned_cols=26 Identities=8% Similarity=0.215 Sum_probs=21.1
Q ss_pred cCCCCceEEEEcCChHHHHHHHHhhc
Q psy7376 153 LMKNTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 153 lm~~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
+....++|+|+|+++.-++.++++++
T Consensus 47 La~~~~~V~avEid~~~~~~~~~~~~ 72 (255)
T 3tqs_A 47 LLTECDNLALVEIDRDLVAFLQKKYN 72 (255)
T ss_dssp HTTTSSEEEEEECCHHHHHHHHHHHT
T ss_pred HHHhCCEEEEEECCHHHHHHHHHHHh
Confidence 33334799999999999999998874
No 89
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=27.31 E-value=40 Score=25.04 Aligned_cols=28 Identities=11% Similarity=0.345 Sum_probs=20.4
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
++..++.++|+++|+++.-++.+.++++
T Consensus 96 a~~~g~~~~v~gvD~s~~~i~~~~~~a~ 123 (233)
T 2ipx_A 96 SDIVGPDGLVYAVEFSHRSGRDLINLAK 123 (233)
T ss_dssp HHHHCTTCEEEEECCCHHHHHHHHHHHH
T ss_pred HHHhCCCcEEEEEECCHHHHHHHHHHhh
Confidence 4444456899999999887766666654
No 90
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=26.78 E-value=52 Score=23.69 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.1
Q ss_pred CCceEEEEcCChHHHHHHHHhhc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
+.++|+++|+++..++..+++++
T Consensus 82 ~~~~v~~vD~s~~~~~~a~~~~~ 104 (205)
T 3grz_A 82 GAKSVLATDISDESMTAAEENAA 104 (205)
T ss_dssp TCSEEEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHH
Confidence 34699999999999999998875
No 91
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=26.53 E-value=44 Score=26.85 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=21.7
Q ss_pred CCceEEEEcCChHHHHHHHHhhcc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.+.|+++|+++..++..++|+++
T Consensus 227 ~~~~v~g~Di~~~~i~~a~~n~~~ 250 (354)
T 3tma_A 227 PTSPVYAGDLDEKRLGLAREAALA 250 (354)
T ss_dssp TTSCEEEEESCHHHHHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHH
Confidence 568999999999999999999864
No 92
>3lho_A Putative hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: PG4; 1.80A {Shewanella frigidimarina}
Probab=26.50 E-value=1.5e+02 Score=23.59 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=30.2
Q ss_pred HHHHhCCCCCceEEEcCCC--CCHHHHHHHHHHCCCceee
Q psy7376 87 FLEASETQRPLTIRTNTLK--TRRRDLAQALVNRGVNLDP 124 (180)
Q Consensus 87 il~a~~~~pp~~lRvN~~k--~~~~~l~~~L~~~Gi~~~~ 124 (180)
++.-...--.+++|||.++ .+.+++.+.|++.|+....
T Consensus 156 v~~~G~~~NH~T~~v~~L~~~~dI~~v~~~l~~~G~~~n~ 195 (267)
T 3lho_A 156 VAALGYRANHFTVSINDLPEFERIEDVNQALKQAGFVLNS 195 (267)
T ss_dssp HHHHCBSCSEEEEETTTCTTCCCHHHHHHHHHHTTCCBCC
T ss_pred HhhcCCccceeehhhcccCCCCCHHHHHHHHHHcCCCccc
Confidence 3333455567899999998 8899999999999987753
No 93
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=26.30 E-value=50 Score=23.03 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=19.2
Q ss_pred ceEEEEcCChHHHHHHHHhhc
Q psy7376 158 GVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 158 G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
++|+++|+++..++..+++++
T Consensus 56 ~~v~~~D~~~~~~~~a~~~~~ 76 (192)
T 1l3i_A 56 RRVYAIDRNPEAISTTEMNLQ 76 (192)
T ss_dssp SEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHH
Confidence 799999999999999998865
No 94
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=25.85 E-value=50 Score=24.78 Aligned_cols=23 Identities=13% Similarity=0.026 Sum_probs=20.4
Q ss_pred CceEEEEcCChHHHHHHHHhhcc
Q psy7376 157 TGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 157 ~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.++|+++|+++.-++..++|+++
T Consensus 89 ~~~v~gvD~s~~~~~~a~~~~~~ 111 (254)
T 2h00_A 89 GWYFLATEVDDMCFNYAKKNVEQ 111 (254)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHH
Confidence 47999999999999999998754
No 95
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=25.77 E-value=54 Score=24.87 Aligned_cols=22 Identities=0% Similarity=0.021 Sum_probs=19.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcc
Q psy7376 158 GVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 158 G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.|+++|+++..++..++|+++
T Consensus 73 ~~v~gvDi~~~~~~~a~~n~~~ 94 (259)
T 3lpm_A 73 AKIVGVEIQERLADMAKRSVAY 94 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHH
Confidence 4999999999999999999764
No 96
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=25.66 E-value=28 Score=24.99 Aligned_cols=24 Identities=21% Similarity=0.048 Sum_probs=9.6
Q ss_pred CCceEEEEcCChHHHHHHHHhhcc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.++++++|+++..++..++|+++
T Consensus 53 ~~~~v~~vD~~~~~~~~a~~~~~~ 76 (215)
T 4dzr_A 53 PGVSVTAVDLSMDALAVARRNAER 76 (215)
T ss_dssp TTEEEEEEECC-------------
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH
Confidence 456999999999999999888753
No 97
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=25.05 E-value=42 Score=25.43 Aligned_cols=23 Identities=4% Similarity=0.137 Sum_probs=19.3
Q ss_pred CCceEEEEcCChHHHHHHHHhhc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
+...|+++|+++..++..+++++
T Consensus 69 p~~~v~GiDis~~~l~~A~~~~~ 91 (235)
T 3ckk_A 69 PDTLILGLEIRVKVSDYVQDRIR 91 (235)
T ss_dssp TTSEEEEEESCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHH
Confidence 56799999999999998877654
No 98
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=24.06 E-value=40 Score=26.63 Aligned_cols=23 Identities=4% Similarity=-0.016 Sum_probs=19.9
Q ss_pred CCceEEEEcCChHHHHHHHHhhc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
..++|+|+|+++.-++.++++++
T Consensus 63 ~~~~v~~vDi~~~~~~~a~~~~~ 85 (299)
T 2h1r_A 63 LAKKVITIDIDSRMISEVKKRCL 85 (299)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHHH
Confidence 34699999999999999998874
No 99
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=23.70 E-value=55 Score=25.03 Aligned_cols=24 Identities=8% Similarity=0.005 Sum_probs=21.1
Q ss_pred CCceEEEEcCChHHHHHHHHhhcc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.++|+++|+++.-++..++|++.
T Consensus 59 ~~~~v~gvDi~~~~~~~a~~n~~~ 82 (260)
T 2ozv_A 59 EKAEVTLYERSQEMAEFARRSLEL 82 (260)
T ss_dssp TTEEEEEEESSHHHHHHHHHHTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHh
Confidence 357999999999999999999864
No 100
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=23.31 E-value=25 Score=17.68 Aligned_cols=14 Identities=7% Similarity=0.441 Sum_probs=11.3
Q ss_pred CcHHHHHHHHHhCC
Q psy7376 67 YNEFLMERIMQIFP 80 (180)
Q Consensus 67 ~P~Wlv~~~~~~~G 80 (180)
.|.||.-.+.-.||
T Consensus 16 tpdwmlplilglyg 29 (29)
T 1cn3_F 16 TPDWMLPLILGLYG 29 (29)
T ss_dssp EEGGGHHHHHHTTC
T ss_pred CchhhHHHHHhccC
Confidence 49999988887776
No 101
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=22.84 E-value=39 Score=26.46 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=25.9
Q ss_pred CCCCHHHHHHhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 142 IGATPEYLGAALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 142 l~~~p~f~~A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
++.-.|.....+....++|+++|+|+.-++..+++++.
T Consensus 52 lGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~ 89 (261)
T 3iv6_A 52 IGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALAD 89 (261)
T ss_dssp ECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSS
T ss_pred EeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh
Confidence 34455554322222246999999999999999998753
No 102
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=22.75 E-value=68 Score=23.16 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=22.3
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
+....+.++|+++|+++.-++..+++++
T Consensus 56 ~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 83 (219)
T 3dh0_A 56 SKMVGEKGKVYAIDVQEEMVNYAWEKVN 83 (219)
T ss_dssp HHHHTTTCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHhCCCcEEEEEECCHHHHHHHHHHHH
Confidence 4444456799999999999999988764
No 103
>2euc_A Hypothetical protein YFMB; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus subtilis} SCOP: a.249.1.1
Probab=22.27 E-value=29 Score=24.00 Aligned_cols=29 Identities=34% Similarity=0.339 Sum_probs=20.7
Q ss_pred CCccccccccCCChHHhhccCChhHHHHHHhHHHHHHhhh
Q psy7376 1 MNIADHEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNF 40 (180)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VNaVLR~~ 40 (180)
|||.|-| |++|++.|-. ..|..++.|-=+
T Consensus 56 mNIGDiE-~~~~~e~e~~----------LssYL~~Llpfv 84 (130)
T 2euc_A 56 MNIGDIE-FALTDEIEKK----------LSGYLSTLLPYV 84 (130)
T ss_dssp HCCSCCS-SCSSSHHHHH----------HHHHHHHHGGGC
T ss_pred eeccChh-hhcchhHHHH----------HHHHHHHHHHHH
Confidence 7999999 7788876632 467777766444
No 104
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=21.87 E-value=57 Score=26.73 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=20.6
Q ss_pred CceEEEEcCChHHHHHHHHhhcc
Q psy7376 157 TGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 157 ~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.++|+++|+++..++..++|+++
T Consensus 243 ~~~V~~vD~s~~al~~a~~n~~~ 265 (396)
T 3c0k_A 243 CSQVVSVDTSQEALDIARQNVEL 265 (396)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHH
Confidence 45999999999999999999864
No 105
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=21.83 E-value=64 Score=25.85 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 154 MKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 154 m~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
..+.++|+++|+++.-++.+++|++.
T Consensus 213 a~~~~~V~~vD~s~~ai~~a~~n~~~ 238 (336)
T 2yx1_A 213 CKNAKKIYAIDINPHAIELLKKNIKL 238 (336)
T ss_dssp TTTSSEEEEEESCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEECCHHHHHHHHHHHHH
Confidence 33456999999999999999999864
No 106
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=21.65 E-value=52 Score=27.30 Aligned_cols=22 Identities=18% Similarity=0.015 Sum_probs=19.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcc
Q psy7376 158 GVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 158 G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.|+|+|+|+..++..++|+++
T Consensus 237 a~V~avDis~~al~~a~~n~~~ 258 (393)
T 4dmg_A 237 AYALAVDKDLEALGVLDQAALR 258 (393)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHH
Confidence 3599999999999999999864
No 107
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=21.46 E-value=62 Score=25.07 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=19.2
Q ss_pred eEEEEcCChHHHHHHHHhhcc
Q psy7376 159 VLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 159 ~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+|+|+|+++.-++..++|+++
T Consensus 150 ~V~~vD~s~~~~~~a~~n~~~ 170 (278)
T 2frn_A 150 KVIAIEKDPYTFKFLVENIHL 170 (278)
T ss_dssp EEEEECCCHHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHH
Confidence 799999999999999999763
No 108
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=21.46 E-value=51 Score=29.67 Aligned_cols=25 Identities=12% Similarity=-0.023 Sum_probs=21.4
Q ss_pred CCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 155 KNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 155 ~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.+.++|+++|+|+..++..++|+++
T Consensus 560 ~ga~~V~aVD~s~~al~~a~~N~~~ 584 (703)
T 3v97_A 560 GGARSTTTVDMSRTYLEWAERNLRL 584 (703)
T ss_dssp TTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 3445799999999999999999864
No 109
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=20.89 E-value=67 Score=23.64 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=24.9
Q ss_pred CCHHHHHHhcCCCCceEEEEcCChHHHHHHHHhhc
Q psy7376 144 ATPEYLGAALMKNTGVLFANDVSKERSKAIVGNFH 178 (180)
Q Consensus 144 ~~p~f~~A~lm~~~G~v~A~Di~~~Rl~~l~~n~~ 178 (180)
...|.....+....++|+++|+++.-++..++++.
T Consensus 75 cG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~ 109 (235)
T 3lcc_A 75 CGGGHDVVAMASPERFVVGLDISESALAKANETYG 109 (235)
T ss_dssp CTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhh
Confidence 33444433344455699999999999999988875
No 110
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=20.84 E-value=75 Score=24.66 Aligned_cols=38 Identities=13% Similarity=-0.190 Sum_probs=27.0
Q ss_pred CCCCHHHHHHhc---CCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 142 IGATPEYLGAAL---MKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 142 l~~~p~f~~A~l---m~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
++...|.....+ ..+.++|+++|+|+.-++..++++++
T Consensus 125 iGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~ 165 (305)
T 3ocj_A 125 VPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAG 165 (305)
T ss_dssp TTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTT
T ss_pred ecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHh
Confidence 444555543232 34567999999999999999988753
No 111
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=20.78 E-value=62 Score=26.06 Aligned_cols=21 Identities=19% Similarity=-0.113 Sum_probs=19.4
Q ss_pred eEEEEcCChHHHHHHHHhhcc
Q psy7376 159 VLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 159 ~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+|+++|+|+..++..++|+++
T Consensus 177 ~V~~VD~s~~al~~a~~n~~~ 197 (332)
T 2igt_A 177 EVTHVDASKKAIGWAKENQVL 197 (332)
T ss_dssp EEEEECSCHHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHH
Confidence 999999999999999999853
No 112
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=20.48 E-value=71 Score=25.15 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=22.5
Q ss_pred HhcCCCCceEEEEcCChHHHHHHHHhhcc
Q psy7376 151 AALMKNTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 151 A~lm~~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
|......++|+++|+++..++..++++++
T Consensus 94 a~~~~~~~~v~gvD~s~~~~~~a~~~~~~ 122 (317)
T 1dl5_A 94 SRVVGEKGLVVSVEYSRKICEIAKRNVER 122 (317)
T ss_dssp HHHHCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHhcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 44433357899999999999999988753
No 113
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=20.47 E-value=66 Score=25.11 Aligned_cols=23 Identities=4% Similarity=-0.103 Sum_probs=19.1
Q ss_pred CceEEEEcCChHHHHHHHHhhcc
Q psy7376 157 TGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 157 ~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
.++|+++|+++.-...+++|+++
T Consensus 110 g~~V~~vE~~~~~~~l~~~~l~~ 132 (258)
T 2oyr_A 110 GCRVRMLERNPVVAALLDDGLAR 132 (258)
T ss_dssp TCCEEEEECCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHH
Confidence 46899999999988888887654
No 114
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=20.38 E-value=70 Score=26.15 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=20.9
Q ss_pred CCceEEEEcCChHHHHHHHHhhcc
Q psy7376 156 NTGVLFANDVSKERSKAIVGNFHR 179 (180)
Q Consensus 156 ~~G~v~A~Di~~~Rl~~l~~n~~R 179 (180)
+.++|+++|+++..++..++|+++
T Consensus 239 g~~~v~~vD~s~~~l~~a~~n~~~ 262 (396)
T 2as0_A 239 GADEVIGIDKSPRAIETAKENAKL 262 (396)
T ss_dssp TCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 345999999999999999999864
Done!