RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7376
(180 letters)
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 151 bits (383), Expect = 2e-45
Identities = 38/162 (23%), Positives = 59/162 (36%), Gaps = 41/162 (25%)
Query: 58 LKDLCTYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVN 117
+ D Y++ +R Q++ + + EA E P R NTLK +DL + L
Sbjct: 7 MLDKLLRLGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNK 65
Query: 118 RGVNLDPIGKWSKVGLVIYNSTVPIGATPEYLG--------------------------- 150
+G + W+K G + I +TPE+L
Sbjct: 66 KGFQFKRV-PWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVAD 124
Query: 151 ------------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180
A LM+N GV++A DV + R + N RL
Sbjct: 125 MAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL 166
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 129 bits (327), Expect = 4e-36
Identities = 37/162 (22%), Positives = 52/162 (32%), Gaps = 45/162 (27%)
Query: 63 TYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNL 122
T + + FL + + FL A + +IR NTLK D Q G L
Sbjct: 5 TVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTL 64
Query: 123 DPIGKWSKVGLVIY---NSTVPIGATPEYLG----------------------------- 150
PI W + G I +P+G+T E+L
Sbjct: 65 TPI-PWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMD 123
Query: 151 ------------AALMKNTGVLFANDVSKERSKAIVGNFHRL 180
+A M N G + AN+ S R K + N R
Sbjct: 124 VAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRC 165
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 118 bits (297), Expect = 5e-32
Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 46/152 (30%)
Query: 69 EFLMERIMQIFPLDELMSFLEA-SETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGK 127
+ + R+ ++ +E +FL+A +E +R +R NTLK + L PI
Sbjct: 4 KAFLSRMAELLG-EEFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRI---SPWPLRPI-P 58
Query: 128 WSKVGLVIYNSTVPIGATPEYLG------------------------------------- 150
W + G P G P +
Sbjct: 59 WCQEGFYYPEEARP-GPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTT 117
Query: 151 --AALMKNTGVLFANDVSKERSKAIVGNFHRL 180
AA M G+L AN+V +R + ++ N R
Sbjct: 118 HLAARMGGKGLLLANEVDGKRVRGLLENVERW 149
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 114 bits (288), Expect = 7e-32
Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 41/132 (31%)
Query: 88 LEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPE 147
+ + ++ IR NTLK L + L N+GV L+ + + S IG+TPE
Sbjct: 2 MIVYKGEKMQFIRVNTLKINPEVLKKRLENKGVVLEKT--FLDYAFEVKKSPFSIGSTPE 59
Query: 148 YLG---------------------------------------AALMKNTGVLFANDVSKE 168
YL A LMKN G + A ++SK
Sbjct: 60 YLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKT 119
Query: 169 RSKAIVGNFHRL 180
R+KA+ N +R+
Sbjct: 120 RTKALKSNINRM 131
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 113 bits (285), Expect = 3e-30
Identities = 25/155 (16%), Positives = 45/155 (29%), Gaps = 48/155 (30%)
Query: 66 SYNEFLMERIMQIFPLDELMSFLEASETQR-PLTIRTNTLKTRRRDLAQALVNRGVNLDP 124
+ + +++ + +E F A E R N LK D+ Q + + P
Sbjct: 7 TLPQQFIKKYRLLLG-EEASDFFSALEQGSVKKGFRWNPLKPAGLDMVQTYHSEELQPAP 65
Query: 125 IGKWSKVGLVIYNSTVPIGATPEYLG---------------------------------- 150
+S G + G + +
Sbjct: 66 ---YSNEGFLG----TVNGKSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGG 118
Query: 151 -----AALMKNTGVLFANDVSKERSKAIVGNFHRL 180
AA MK G+L N++ +R+K + N R
Sbjct: 119 KSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW 153
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 103 bits (258), Expect = 4e-27
Identities = 24/147 (16%), Positives = 40/147 (27%), Gaps = 55/147 (37%)
Query: 89 EASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKV----------------G 132
+Q P +R NTLKT D+ +G +
Sbjct: 4 PGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPE 63
Query: 133 LVIYNSTVPIGATPEYLG---------------------------------------AAL 153
L+++ + + P Y AAL
Sbjct: 64 LLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAAL 123
Query: 154 MKNTGVLFANDVSKERSKAIVGNFHRL 180
+KN G +FA D+ +R ++ R
Sbjct: 124 LKNQGKIFAFDLDAKRLASMATLLARA 150
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 65.4 bits (160), Expect = 4e-13
Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 48/184 (26%)
Query: 36 VLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDELMSFLEASETQR 95
+L +Y+ ++ E L + +L+ER+ I + F ++
Sbjct: 133 LLDKIFEYKPNPKNELEE-------LEWKYLAPSWLIERVKGILGDETEDFFRSVNKRHE 185
Query: 96 PLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKVGLVIYNSTVPIGATPEY------- 148
++IR NTLK ++ L GV + + L I + +
Sbjct: 186 WISIRVNTLKANVEEVIGELEEDGVEVVR-SERVPTILKI-KGPYNFDTSSAFNEGKIIV 243
Query: 149 -----------LG---------------------AALMKNTGVLFANDVSKERSKAIVGN 176
L A LMKN G ++A DV K R K +
Sbjct: 244 QEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDF 303
Query: 177 FHRL 180
R+
Sbjct: 304 VKRM 307
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 51.8 bits (125), Expect = 2e-08
Identities = 23/161 (14%), Positives = 50/161 (31%), Gaps = 41/161 (25%)
Query: 58 LKDLCTYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVN 117
+ + +L++R+ + +P ++ S +EA+ + P+ +R N R L
Sbjct: 136 FNASDARYLHPSWLLKRLQKAYP-EQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDE 194
Query: 118 RGVNLDPIGKWSKVGLVIYNSTVPIGATPEY---------LGAAL--------------- 153
G+ P + + + P+ A P + A
Sbjct: 195 AGMKGFPHA-DYPDAVRL-ETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILD 252
Query: 154 --------------MKNTGVLFANDVSKERSKAIVGNFHRL 180
+ + A D+ ++R + N RL
Sbjct: 253 LCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL 293
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 2e-05
Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 24/141 (17%)
Query: 13 SEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLM 72
S+EE D ++ D L + ++ +L+ +Y +FLM
Sbjct: 47 SKEEIDHIIMSKDAVSG---TLRLFWTLLSK--QEEMVQKFVEEVLRI-----NY-KFLM 95
Query: 73 ERIMQ--IFPLDELMSFLEA-------SETQRPLTI-RTNTLKTRRRDLAQALVNRGVNL 122
I P ++E ++ + R R+ L + + V +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 123 D---PIGKWSKVGLVIYNSTV 140
D GK V + V
Sbjct: 156 DGVLGSGKTWVALDVCLSYKV 176
Score = 41.4 bits (96), Expect = 7e-05
Identities = 23/133 (17%), Positives = 42/133 (31%), Gaps = 53/133 (39%)
Query: 3 IADHEVFAFPSEEEADKVLSIPDV-------EQRIK----------DVLMVLGNFKQYRD 45
I H + E +++ V EQ+I+ +L L K Y+
Sbjct: 477 IGHH----LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 46 PARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLK 105
Y N+ ER+ ++ ++ FL E N +
Sbjct: 533 ------------------YICDNDPKYERL-----VNAILDFLPKIE--------ENLIC 561
Query: 106 TRRRDLAQ-ALVN 117
++ DL + AL+
Sbjct: 562 SKYTDLLRIALMA 574
Score = 32.1 bits (72), Expect = 0.084
Identities = 31/191 (16%), Positives = 50/191 (26%), Gaps = 54/191 (28%)
Query: 12 PSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLL-LKDLCT-----YF 65
+D +I I+ L L K Y + LL L ++ F
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---------CLLVLLNVQNAKAWNAF 262
Query: 66 SYN-------------EFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDL- 111
+ + +FL LD L E ++ L R +DL
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV---KSLLLKYLDCRPQDLP 319
Query: 112 AQALVNRGVN---LDPIGK-----------WSKVGLVIYNSTVPIGATPEYLGAALMKN- 156
+ L N L I + W V + I ++ L A +
Sbjct: 320 REVL---TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI--IESSLNVLEPAEYRKM 374
Query: 157 --TGVLFANDV 165
+F
Sbjct: 375 FDRLSVFPPSA 385
Score = 27.9 bits (61), Expect = 2.3
Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 36/115 (31%)
Query: 31 KDVL--MVLGNFKQYRDPAR-------SRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPL 81
K + V ++K C +L+ L + L+ +I
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-------QKLLYQIDP---- 211
Query: 82 DELMSFLEASETQRPLTIRTNTLKTRRRDL------AQALVNRGVNLDPIGKWSK 130
++ S+ + +R ++++ R L L+ V L + +
Sbjct: 212 ----NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---V-LLNV--QNA 256
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.076
Identities = 34/170 (20%), Positives = 53/170 (31%), Gaps = 56/170 (32%)
Query: 47 ARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFP-----LDELMSFLEASETQRP---LT 98
S + + K + F F+ R + +P L LE +E P L+
Sbjct: 286 TDSWESFFVSVRKAITVLF----FIGVRCYEAYPNTSLPPSILEDSLENNEGV-PSPMLS 340
Query: 99 IR-------------TNTLKTRRRDLAQALVN--------------RGVNLD------PI 125
I TN+ + + +LVN G+NL P
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 126 G------KWSKVGLVIYNSTVPIGATP---EYLGAALMKNTGVLFANDVS 166
G +S+ L N +P+ + P L A L N+VS
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVAS-PFHSHLLVPASDLINKDLVKNNVS 449
Score = 28.1 bits (62), Expect = 2.1
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 31/105 (29%)
Query: 88 LEASETQRPLTIRTNTLK-------------TRRRD-----LAQALVNRGVNLDPIGKWS 129
++A T RPLT+ +L+ ++ ++ L + + +P +
Sbjct: 1 MDAYST-RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT---T 56
Query: 130 KVGLVI----YNSTV----PIGATPEYLGAALMK-NTGVLFANDV 165
LV Y S++ +G + L L + L ND+
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI 101
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 30.7 bits (70), Expect = 0.27
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 125 IGKWSKVG-LVIYNSTVPIGATPEYLGAALMKNTGVLFANDV----SKER 169
+GK+ K G LV+ ST+ G T L + +G+ D + ER
Sbjct: 133 VGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFALAHAPER 182
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi
conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 29.5 bits (67), Expect = 0.58
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 125 IGKWSKVG-LVIYNSTVPIGATPEYLGAALMKNTGVLFANDV----SKER 169
I + K G +I ST+ +++ +++N G D+ ER
Sbjct: 115 ILPFLKKGNTIIVESTIAPKTMDDFV-KPVIENLGFTIGEDIYLVHCPER 163
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3;
activator, DNA-binding, metal-binding, nucleus; HET:
DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A*
1gat_A* 1gau_A*
Length = 63
Score = 26.2 bits (57), Expect = 2.0
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 93 TQRPLTIRTNTLKTRRR 109
RPLT++ ++TR R
Sbjct: 43 INRPLTMKKEGIQTRNR 59
>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM
superfamily, biosynthetic protein; HET: MP5; 2.10A
{Caulobacter crescentus} PDB: 3epm_A* 3epn_A*
Length = 612
Score = 27.8 bits (62), Expect = 2.1
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 119 GVNLDPIGKWSKVGLVIYNSTVPIGATPEY 148
G N+ I W +I NS+VPIG P Y
Sbjct: 253 GRNIHNIRDW-----IIRNSSVPIGTVPIY 277
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 27.5 bits (62), Expect = 2.5
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 14/62 (22%)
Query: 72 MERIMQIFPLDELMSFLEASET---QRPLTIRTNTLKTRR----------RDLAQALVNR 118
M L+ L FLE + ++ + R +T + R R L L
Sbjct: 9 FPSTMMDEELN-LWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRAL 67
Query: 119 GV 120
GV
Sbjct: 68 GV 69
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein,
transcription factor, zinc binding domain, complex
(transcription regulation/DNA); HET: DNA; NMR
{Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A*
6gat_A* 7gat_A*
Length = 66
Score = 25.8 bits (56), Expect = 2.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 93 TQRPLTIRTNTLKTRRRDLAQA 114
RPL+++T+ +K R R+ A +
Sbjct: 45 VVRPLSLKTDVIKKRNRNSANS 66
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens}
PDB: 2ld5_A*
Length = 73
Score = 25.6 bits (56), Expect = 4.0
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 42 QYRDPARSRCEYTSLLLKDLCTYFSYNEFLMER 74
+ + R YT + LK+L ++ N+F+ +
Sbjct: 3 HMLEGRKKRVPYTKVQLKELEREYATNKFITKD 35
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 26.2 bits (57), Expect = 4.2
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 127 KWSKVGLVIYNSTVPIGATPEYLGAALMKNTGVLFANDVSKE 168
W + ++ + A G LM+ T +L +V
Sbjct: 45 AWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFT 86
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 25.5 bits (56), Expect = 4.5
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 44 RDPARSRCEYTSLLLKDLCTYFSYNEFLM--ERIMQIFPLDELMSFLEASETQ 94
+ RSR +T L L L F ++L +RI +L L S+ Q
Sbjct: 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRI-------DLAESLGLSQLQ 60
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA
domain, regula subunit of DDK, CDC7, phosphorylation,
nuclear; 2.40A {Saccharomyces cerevisiae}
Length = 134
Score = 25.4 bits (55), Expect = 7.6
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 76 MQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVN 117
M+++ ++ FL+ + +T + L+ L N
Sbjct: 83 MKVWSYEKAARFLKNLDVDLDHLSKTKSASLAAPTLSNLLHN 124
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 24.2 bits (53), Expect = 7.9
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 48 RSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDELMSFLEASETQ 94
R R ++S L L F+ N +L ER Q +L S L +E Q
Sbjct: 5 RPRTAFSSEQLARLKREFNENRYLTERRRQ-----QLSSELGLNEAQ 46
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA
domain, regula subunit of DDK, CDC7, phosphorylation,
nuclear; 2.70A {Saccharomyces cerevisiae}
Length = 151
Score = 25.5 bits (55), Expect = 7.9
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 76 MQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVN 117
M+++ ++ FL+ + +T + L+ L N
Sbjct: 100 MKVWSYEKAARFLKNLDVDLDHLSKTKSASLAAPTLSNLLHN 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.391
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,681,071
Number of extensions: 150841
Number of successful extensions: 356
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 40
Length of query: 180
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 92
Effective length of database: 4,244,745
Effective search space: 390516540
Effective search space used: 390516540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)