RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7376
         (180 letters)



>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
           {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
          Length = 313

 Score = 73.9 bits (180), Expect = 1e-16
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 65  FSYNEFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDP 124
             Y++   +R  Q++  +  +   EA E   P   R NTLK   +DL + L  +G     
Sbjct: 12  LGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKR 70

Query: 125 IGKWSKVGLVIYNSTVPIGATPEYL 149
           +  W+K G  +      I +TPE+L
Sbjct: 71  V-PWAKEGFCLTREPFSITSTPEFL 94


>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
           methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 284

 Score = 55.9 bits (133), Expect = 2e-10
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 69  EFLMERIMQIFPLDELMSFLEASETQRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKW 128
            +L++R+ + +P ++  S +EA+  + P+ +R N     R      L   G+   P   +
Sbjct: 3   SWLLKRLQKAYP-EQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADY 61

Query: 129 SKVGLVIYNSTVPIGATPEYLGAALM 154
                V   +  P+ A P +    + 
Sbjct: 62  PDA--VRLETPAPVHALPGFEDGWVT 85


>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 293

 Score = 47.0 bits (110), Expect = 3e-07
 Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 16/72 (22%)

Query: 94  QRPLTIRTNTLKTRRRDLAQALVNRGVNLDPIGKWSKV----------------GLVIYN 137
           Q P  +R NTLKT   D+      +G +                           L+++ 
Sbjct: 1   QLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFP 60

Query: 138 STVPIGATPEYL 149
           +   +   P Y 
Sbjct: 61  AQTDLHEHPLYR 72


>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1
           {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 66

 Score = 25.7 bits (56), Expect = 1.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 93  TQRPLTIRTNTLKTRRR 109
             RPLT+R + ++TR R
Sbjct: 40  VNRPLTMRKDGIQTRNR 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 637,151
Number of extensions: 27896
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 6
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)