BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7377
         (83 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q922K7|NOP2_MOUSE Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus
           GN=Nop2 PE=2 SV=1
          Length = 793

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 3/86 (3%)

Query: 1   MNIADHEVFAFPSEEEADKVLSIPD---VEQRIKDVLMVLGNFKQYRDPARSRCEYTSLL 57
           +N+ D E F  P   E D+    PD   V +RI+D++ VL +F   R+  RSR EY S L
Sbjct: 196 INVEDEEAFVLPPAGETDQDGQAPDLQRVHKRIQDIVGVLRDFGAQREEGRSRAEYLSRL 255

Query: 58  LKDLCTYFSYNEFLMERIMQIFPLDE 83
            KDL TY+SY +FL+ ++M++FPL E
Sbjct: 256 QKDLATYYSYGDFLLSKLMELFPLSE 281


>sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens
           GN=NOP2 PE=1 SV=2
          Length = 812

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 3/82 (3%)

Query: 5   DHEVFAFPSEEEADKVLSIPD---VEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDL 61
           D E F  P   E ++    PD   V +RI+D++ +L +F   R+  RSR EY + L KDL
Sbjct: 215 DEEPFVLPPAGEMEQDAQAPDLQRVHKRIQDIVGILRDFGAQREEGRSRSEYLNRLKKDL 274

Query: 62  CTYFSYNEFLMERIMQIFPLDE 83
             Y+SY +FL+ ++M +FPL E
Sbjct: 275 AIYYSYGDFLLGKLMDLFPLSE 296


>sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=SPBP8B7.20c PE=1 SV=1
          Length = 608

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 39/58 (67%)

Query: 26  VEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDE 83
           ++ RI++++ VL +FK   +P R+R EY   LL D+C Y+ Y+ FL E++ ++F + E
Sbjct: 194 IQLRIQEIVRVLNDFKNLCEPGRNRSEYVDQLLNDICAYYGYSRFLAEKLFELFSVSE 251


>sp|P40991|NOP2_YEAST Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=NOP2 PE=1
           SV=1
          Length = 618

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 22  SIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIF 79
           ++     R+ +++ VL NFK      RSR EY   LLKD+C YF Y  FL E++  +F
Sbjct: 196 NLTSTRTRMIEIVKVLENFKTLGAEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLF 253


>sp|P12246|SAMP_MOUSE Serum amyloid P-component OS=Mus musculus GN=Apcs PE=1 SV=2
          Length = 224

 Score = 32.0 bits (71), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 7  EVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYT 54
          +VF FP E E D V  IP +E+ +++  +    F+ Y D +RS+  ++
Sbjct: 27 KVFVFPRESETDHVKLIPHLEKPLQNFTLC---FRTYSDLSRSQSLFS 71


>sp|P23680|SAMP_RAT Serum amyloid P-component OS=Rattus norvegicus GN=Apcs PE=2 SV=2
          Length = 228

 Score = 31.6 bits (70), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 5  DHEVFAFPSEEEADKVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYT 54
          + +VF FP E E D V  IP +E+ +++  +    F+ Y D +RS+  ++
Sbjct: 25 NQKVFVFPRESETDYVKLIPWLEKPLQNFTLC---FRAYSDLSRSQSLFS 71


>sp|Q9TS33|RYR3_RABIT Ryanodine receptor 3 OS=Oryctolagus cuniculus PE=1 SV=1
          Length = 4872

 Score = 28.9 bits (63), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 20   VLSIPD-VEQRIKDVLMVLGNFKQYRDPARSRCEYTSL------LLKDLCTYFSY 67
            +L +PD VE+   D+  + G  K+  D A S   YT +      +L  LC Y SY
Sbjct: 3093 ILGMPDTVEEMCPDIPQLEGLMKEINDLAESGARYTEMPHVIEVILPMLCNYLSY 3147


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.140    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,394,575
Number of Sequences: 539616
Number of extensions: 946783
Number of successful extensions: 3459
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3453
Number of HSP's gapped (non-prelim): 8
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)