Query psy7377
Match_columns 83
No_of_seqs 101 out of 201
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 16:42:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ld7_B Paired amphipathic heli 77.0 9.6 0.00033 22.9 6.1 53 24-83 16-74 (75)
2 1r7c_A Genome polyprotein; mem 63.3 5.8 0.0002 20.7 2.3 17 26-42 5-21 (31)
3 1kdx_A CBP; complex (transcrip 58.9 13 0.00044 23.0 3.8 44 20-63 29-74 (81)
4 3lqh_A Histone-lysine N-methyl 56.5 16 0.00054 25.3 4.3 27 19-45 103-141 (183)
5 2gpe_A Bifunctional protein PU 54.8 22 0.00076 18.8 4.4 15 46-60 25-39 (52)
6 3tlp_A Protein polybromo-1; PB 52.7 16 0.00054 23.8 3.7 29 19-47 70-110 (150)
7 2ay0_A Bifunctional PUTA prote 52.1 29 0.001 19.4 4.4 27 25-60 13-39 (58)
8 3nxb_A CAT eye syndrome critic 49.7 21 0.00073 22.1 3.8 13 19-31 55-67 (116)
9 3h87_C Putative uncharacterize 48.5 43 0.0015 20.2 4.9 21 45-65 23-43 (73)
10 1sy9_B Cyclic-nucleotide-gated 44.0 16 0.00054 18.1 1.9 17 27-43 7-23 (26)
11 3o36_A Transcription intermedi 43.9 68 0.0023 21.2 6.3 15 18-32 118-132 (184)
12 3ljw_A Protein polybromo-1; al 43.0 52 0.0018 20.5 4.9 14 19-32 53-66 (120)
13 2cpg_A REPA protein, transcrip 42.1 34 0.0012 17.3 4.7 15 47-61 25-39 (45)
14 3rcw_A Bromodomain-containing 40.9 42 0.0014 21.3 4.2 29 19-47 52-92 (135)
15 2f05_A Paired amphipathic heli 40.3 68 0.0023 20.2 5.8 48 30-81 28-82 (105)
16 3uv4_A Second bromodomain of h 40.3 38 0.0013 22.5 4.1 29 19-47 69-109 (158)
17 3mqm_A Probable histone-lysine 39.1 23 0.00078 22.3 2.7 29 19-47 54-94 (126)
18 2d9e_A Peregrin; four-helix bu 38.8 71 0.0024 20.0 6.5 29 19-47 46-86 (121)
19 2i7k_A Bromodomain-containing 38.2 73 0.0025 19.9 6.7 42 6-47 26-87 (117)
20 3iu5_A Protein polybromo-1; PB 38.0 26 0.0009 21.7 2.8 13 19-31 50-62 (116)
21 2oss_A HUNK1 protein, bromodom 37.7 76 0.0026 20.0 5.7 14 19-32 62-75 (127)
22 1nmr_A Poly(A)-binding protein 37.5 15 0.00053 22.8 1.6 23 20-42 62-84 (85)
23 1e91_A Paired amphipathic heli 36.3 70 0.0024 19.2 7.5 49 30-82 28-83 (85)
24 3k2j_A Protein polybromo-1; PB 35.6 85 0.0029 19.9 6.3 29 19-47 62-102 (130)
25 2rno_A Putative DNA-binding pr 35.2 18 0.00063 23.6 1.7 28 28-57 20-47 (110)
26 3mb4_A Protein polybromo-1; PB 33.0 28 0.00095 21.9 2.4 13 19-31 60-72 (124)
27 3hme_A Bromodomain-containing 31.9 95 0.0032 19.4 6.4 14 19-32 52-65 (123)
28 3q2e_A Bromodomain and WD repe 31.2 37 0.0013 21.3 2.7 28 19-46 49-88 (123)
29 1g1e_B SIN3A; four-helix bundl 31.0 24 0.00083 21.6 1.7 49 30-82 31-89 (89)
30 2k5j_A Uncharacterized protein 30.8 26 0.00089 20.8 1.8 15 46-60 31-45 (80)
31 3qc1_A Immunoglobulin-binding 30.4 1.5E+02 0.005 21.1 6.5 59 19-83 29-87 (243)
32 2dkw_A Hypothetical protein KI 30.4 1E+02 0.0035 19.7 4.8 31 18-48 45-87 (131)
33 2dat_A Possible global transcr 29.5 62 0.0021 20.2 3.6 13 19-31 58-70 (123)
34 4alg_A Bromodomain-containing 29.3 82 0.0028 20.6 4.3 14 19-32 73-86 (154)
35 3dai_A ATPase family AAA domai 28.0 41 0.0014 21.3 2.5 29 19-47 49-89 (130)
36 2grc_A Probable global transcr 27.6 39 0.0013 21.4 2.4 29 19-47 57-97 (129)
37 2k9i_A Plasmid PRN1, complete 27.0 73 0.0025 16.5 5.4 15 47-61 32-46 (55)
38 2ouo_A HUNK1 protein, bromodom 26.8 1E+02 0.0035 19.5 4.3 13 19-31 66-78 (130)
39 2kfd_A PRE-mRNA-processing pro 26.3 28 0.00096 21.1 1.4 40 43-82 25-69 (69)
40 1qls_A S100C protein, calgizza 25.8 92 0.0032 17.3 3.9 56 26-81 8-67 (99)
41 2ri7_A Nucleosome-remodeling f 25.4 1.4E+02 0.0048 19.3 5.9 13 19-31 111-123 (174)
42 3u5n_A E3 ubiquitin-protein li 24.5 34 0.0012 23.3 1.7 13 19-31 119-131 (207)
43 3fkm_X Signaling protein; brom 24.5 1.6E+02 0.0053 19.5 5.2 29 19-47 62-102 (166)
44 3g0l_A Hwalp4, bromodomain adj 24.1 1.3E+02 0.0044 18.4 6.4 29 19-47 52-92 (117)
45 1whr_A Hypothetical KIAA1002 p 23.9 45 0.0015 21.7 2.1 18 51-68 58-75 (124)
46 4dnn_A Protein quaking, MQKI, 23.9 36 0.0012 19.8 1.5 14 49-62 2-15 (56)
47 3mb3_A PH-interacting protein; 23.7 55 0.0019 20.7 2.5 28 19-46 60-99 (135)
48 1txj_A Translationally control 23.3 16 0.00054 25.4 -0.2 31 32-63 67-97 (171)
49 1e6i_A Transcriptional activat 23.1 1.4E+02 0.0049 18.5 5.9 29 19-47 52-92 (121)
50 3d7c_A General control of amin 21.8 1.4E+02 0.0049 18.1 6.2 14 19-32 46-59 (112)
51 2yyn_A Transcription intermedi 21.6 1.6E+02 0.0055 18.6 6.3 14 19-32 58-71 (135)
52 3uv5_A Transcription initiatio 20.9 1.4E+02 0.0047 21.0 4.4 29 19-47 176-216 (265)
53 2ro1_A Transcription intermedi 20.9 49 0.0017 22.4 1.9 14 19-32 113-126 (189)
54 3n10_A Adenylate cyclase 2; CY 20.4 33 0.0011 22.4 0.9 33 21-57 145-177 (179)
55 3dex_A SAV_2001; alpha-beta pr 20.3 40 0.0014 21.7 1.3 16 20-35 74-89 (107)
56 3qth_A Uncharacterized protein 20.2 57 0.0019 22.5 2.2 21 20-40 82-102 (176)
No 1
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=77.02 E-value=9.6 Score=22.88 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=37.8
Q ss_pred HHHHHHH------HHHHHHhhchhhccCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCCCC
Q psy7377 24 PDVEQRI------KDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDE 83 (83)
Q Consensus 24 ~~v~~RI------k~iv~vL~~fk~~r~~grSR~eY~~~L~~Di~~yYgYn~fL~ek~~~LF~~~E 83 (83)
..|+.|+ .+-+.+|.-|++ .-.+|.+.+++. ..+.|.+++|++-|-.+.|-.|
T Consensus 16 ~kVK~~l~~~~~Y~eFLk~lnlf~q---~~Id~~eLv~~V----~~~lg~~pdL~~~Fk~Fl~~~e 74 (75)
T 2ld7_B 16 DKVRKALRSAEAYENFLRCLVIFNQ---EVISRAELVQLV----SPFLGKFPELFNWFKNFLGYKE 74 (75)
T ss_dssp HHHHHHHCSHHHHHHHHHHHHHHHT---TCSCHHHHHHHT----HHHHTTCHHHHHHHHHHHTCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhhh---cCcCHHHHHHHH----HHHHccCHHHHHHHHHHcCCCC
Confidence 4556665 455777777754 346898887554 3467999999999998887654
No 2
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=63.31 E-value=5.8 Score=20.69 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhchhh
Q psy7377 26 VEQRIKDVLMVLGNFKQ 42 (83)
Q Consensus 26 v~~RIk~iv~vL~~fk~ 42 (83)
++.=+.-++.||+|||.
T Consensus 5 L~~iwdWvctvLsDfkt 21 (31)
T 1r7c_A 5 LRDIWDWICEVLSDFKT 21 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556789999999986
No 3
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=58.85 E-value=13 Score=22.96 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=31.5
Q ss_pred CCChHHHHH-HHHHHHHHhhchhhc-cCCCCCHHHHHHHHHHHHHH
Q psy7377 20 VLSIPDVEQ-RIKDVLMVLGNFKQY-RDPARSRCEYTSLLLKDLCT 63 (83)
Q Consensus 20 ~~dl~~v~~-RIk~iv~vL~~fk~~-r~~grSR~eY~~~L~~Di~~ 63 (83)
.||.....+ ||..++.-...+..- =+.-.||.+|..+|..=|+.
T Consensus 29 ~pdp~a~~d~rm~~l~~yArkvE~~~ye~A~srdeYY~llA~kiyk 74 (81)
T 1kdx_A 29 TPDPAALKDRRMENLVAYAKKVEGDMYESANSRDEYYHLLAEKIYK 74 (81)
T ss_dssp CSSGGGGGSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CCChhhhhhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456555444 999999888777553 25577999999998876543
No 4
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=56.53 E-value=16 Score=25.27 Aligned_cols=27 Identities=11% Similarity=0.315 Sum_probs=20.7
Q ss_pred cCCChHHHHHHHH------------HHHHHhhchhhccC
Q psy7377 19 KVLSIPDVEQRIK------------DVLMVLGNFKQYRD 45 (83)
Q Consensus 19 ~~~dl~~v~~RIk------------~iv~vL~~fk~~r~ 45 (83)
.|+||++|+.|++ |+..|+.|.-+..+
T Consensus 103 ~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~ 141 (183)
T 3lqh_A 103 QPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDG 141 (183)
T ss_dssp -CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccC
Confidence 4899999999975 78888888755443
No 5
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=54.80 E-value=22 Score=18.82 Aligned_cols=15 Identities=7% Similarity=-0.141 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHHHH
Q psy7377 46 PARSRCEYTSLLLKD 60 (83)
Q Consensus 46 ~grSR~eY~~~L~~D 60 (83)
.|+||++++.+....
T Consensus 25 ~~rs~s~lir~Ai~~ 39 (52)
T 2gpe_A 25 IDRTPHWLIKQAIFS 39 (52)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHH
Confidence 389999999876544
No 6
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=52.71 E-value=16 Score=23.81 Aligned_cols=29 Identities=17% Similarity=0.481 Sum_probs=21.7
Q ss_pred cCCChHHHHHHHH------------HHHHHhhchhhccCCC
Q psy7377 19 KVLSIPDVEQRIK------------DVLMVLGNFKQYRDPA 47 (83)
Q Consensus 19 ~~~dl~~v~~RIk------------~iv~vL~~fk~~r~~g 47 (83)
.|+||.+|++||+ |+-.|.+|-+..+.+|
T Consensus 70 ~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 110 (150)
T 3tlp_A 70 EPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEG 110 (150)
T ss_dssp SCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 7899999999984 5556666666666654
No 7
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=52.12 E-value=29 Score=19.41 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhchhhccCCCCCHHHHHHHHHHH
Q psy7377 25 DVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKD 60 (83)
Q Consensus 25 ~v~~RIk~iv~vL~~fk~~r~~grSR~eY~~~L~~D 60 (83)
.++.|+..+... .||||+.++.+...+
T Consensus 13 el~~rL~~lA~~---------~~rs~s~lireAi~~ 39 (58)
T 2ay0_A 13 ATRERIKSAATR---------IDRTPHWLIKQAIFS 39 (58)
T ss_dssp HHHHHHHHHHHH---------TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------HCcCHHHHHHHHHHH
Confidence 345666555443 399999999876654
No 8
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=49.72 E-value=21 Score=22.10 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=11.9
Q ss_pred cCCChHHHHHHHH
Q psy7377 19 KVLSIPDVEQRIK 31 (83)
Q Consensus 19 ~~~dl~~v~~RIk 31 (83)
.|+||.+|+.|++
T Consensus 55 ~Pmdl~tI~~kl~ 67 (116)
T 3nxb_A 55 APMDISSMEKKLN 67 (116)
T ss_dssp SCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHc
Confidence 7899999999985
No 9
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=48.48 E-value=43 Score=20.20 Aligned_cols=21 Identities=24% Similarity=0.083 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q psy7377 45 DPARSRCEYTSLLLKDLCTYF 65 (83)
Q Consensus 45 ~~grSR~eY~~~L~~Di~~yY 65 (83)
..|+|+++|+..+....+..=
T Consensus 23 ~~G~S~~~ylr~~Le~~a~~~ 43 (73)
T 3h87_C 23 RLGLSRTEYIRRRLAQDAQTA 43 (73)
T ss_dssp HHTCCHHHHHHHHHHHHHTSC
T ss_pred HcCCCHHHHHHHHHHHHhcCC
Confidence 349999999998887766543
No 10
>1sy9_B Cyclic-nucleotide-gated olfactory channel; helix-turn-helix, calcium-binding protein; NMR {Xenopus laevis}
Probab=43.95 E-value=16 Score=18.07 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhchhhc
Q psy7377 27 EQRIKDVLMVLGNFKQY 43 (83)
Q Consensus 27 ~~RIk~iv~vL~~fk~~ 43 (83)
..||-.+|+||.+|...
T Consensus 7 frri~rlvgv~r~wa~~ 23 (26)
T 1sy9_B 7 FRRIARLVGVLREWAYR 23 (26)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46999999999999543
No 11
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=43.85 E-value=68 Score=21.22 Aligned_cols=15 Identities=7% Similarity=0.523 Sum_probs=12.8
Q ss_pred ccCCChHHHHHHHHH
Q psy7377 18 DKVLSIPDVEQRIKD 32 (83)
Q Consensus 18 e~~~dl~~v~~RIk~ 32 (83)
..|+||.+|+.||+.
T Consensus 118 k~PmdL~tI~~kl~~ 132 (184)
T 3o36_A 118 KNPMDLSTIKKRLQE 132 (184)
T ss_dssp SSCCCHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHh
Confidence 378999999999863
No 12
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=42.97 E-value=52 Score=20.48 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=12.5
Q ss_pred cCCChHHHHHHHHH
Q psy7377 19 KVLSIPDVEQRIKD 32 (83)
Q Consensus 19 ~~~dl~~v~~RIk~ 32 (83)
.|+||.+|+.|++.
T Consensus 53 ~PmdL~tI~~kl~~ 66 (120)
T 3ljw_A 53 EPIDLKTIAQRIQN 66 (120)
T ss_dssp SCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHcc
Confidence 78999999999864
No 13
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=42.13 E-value=34 Score=17.26 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=12.1
Q ss_pred CCCHHHHHHHHHHHH
Q psy7377 47 ARSRCEYTSLLLKDL 61 (83)
Q Consensus 47 grSR~eY~~~L~~Di 61 (83)
|+||++++.+.....
T Consensus 25 g~srS~~ir~ai~~~ 39 (45)
T 2cpg_A 25 GLSKSAMISVALENY 39 (45)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 889999998876643
No 14
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=40.95 E-value=42 Score=21.32 Aligned_cols=29 Identities=14% Similarity=0.402 Sum_probs=21.7
Q ss_pred cCCChHHHHHHHH------------HHHHHhhchhhccCCC
Q psy7377 19 KVLSIPDVEQRIK------------DVLMVLGNFKQYRDPA 47 (83)
Q Consensus 19 ~~~dl~~v~~RIk------------~iv~vL~~fk~~r~~g 47 (83)
.|+||.+|+.|++ |+-.|.+|-...+.+|
T Consensus 52 ~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (135)
T 3rcw_A 52 HPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARD 92 (135)
T ss_dssp SCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 7899999999984 5556666666666655
No 15
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=40.32 E-value=68 Score=20.24 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=34.6
Q ss_pred HHHHHHHhhchhhccC--CC-----CCHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCC
Q psy7377 30 IKDVLMVLGNFKQYRD--PA-----RSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPL 81 (83)
Q Consensus 30 Ik~iv~vL~~fk~~r~--~g-----rSR~eY~~~L~~Di~~yYgYn~fL~ek~~~LF~~ 81 (83)
-++-+.||.+|++.+. +| +|-.+ +..-++..+...+.|+.-|-...|+
T Consensus 28 Y~~FL~IL~~yk~~~~d~~g~~~~~~s~~e----V~~~V~~LF~~hpDLl~eFn~FLP~ 82 (105)
T 2f05_A 28 YRSFLEILHTYQKEQLHTKGRPFRGMSEEE----VFTEVANLFRGQEDLLSEFGQFLPE 82 (105)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSSSCCCCHHH----HHHHHHHHTTTCHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHhccccccccccccCcHHH----HHHHHHHHHccCHHHHHHHHHHCCC
Confidence 3677899999988653 23 56555 4455667777889999998777775
No 16
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=40.27 E-value=38 Score=22.49 Aligned_cols=29 Identities=24% Similarity=0.531 Sum_probs=20.9
Q ss_pred cCCChHHHHHHHH------------HHHHHhhchhhccCCC
Q psy7377 19 KVLSIPDVEQRIK------------DVLMVLGNFKQYRDPA 47 (83)
Q Consensus 19 ~~~dl~~v~~RIk------------~iv~vL~~fk~~r~~g 47 (83)
.|+||.+|+.||+ |+-.|.+|-...+.+|
T Consensus 69 ~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~ 109 (158)
T 3uv4_A 69 NPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE 109 (158)
T ss_dssp SCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 7899999999985 4555556655555554
No 17
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=39.13 E-value=23 Score=22.33 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=19.8
Q ss_pred cCCChHHHHHHHHH------------HHHHhhchhhccCCC
Q psy7377 19 KVLSIPDVEQRIKD------------VLMVLGNFKQYRDPA 47 (83)
Q Consensus 19 ~~~dl~~v~~RIk~------------iv~vL~~fk~~r~~g 47 (83)
.|+||.+|++|++. +-.|.+|-+..+.+|
T Consensus 54 ~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 94 (126)
T 3mqm_A 54 DPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRK 94 (126)
T ss_dssp SCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 78999999999863 444555555555444
No 18
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.78 E-value=71 Score=19.98 Aligned_cols=29 Identities=17% Similarity=0.356 Sum_probs=22.3
Q ss_pred cCCChHHHHHHHH------------HHHHHhhchhhccCCC
Q psy7377 19 KVLSIPDVEQRIK------------DVLMVLGNFKQYRDPA 47 (83)
Q Consensus 19 ~~~dl~~v~~RIk------------~iv~vL~~fk~~r~~g 47 (83)
.|+||.+|+.|++ |+-.|.+|=...+.+|
T Consensus 46 ~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 86 (121)
T 2d9e_A 46 KPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKD 86 (121)
T ss_dssp SCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 7999999999985 5666666666666665
No 19
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=38.18 E-value=73 Score=19.91 Aligned_cols=42 Identities=19% Similarity=0.432 Sum_probs=26.5
Q ss_pred ccccCCCChHH--------hccCCChHHHHHHHH------------HHHHHhhchhhccCCC
Q psy7377 6 HEVFAFPSEEE--------ADKVLSIPDVEQRIK------------DVLMVLGNFKQYRDPA 47 (83)
Q Consensus 6 ~e~f~lp~~ee--------~e~~~dl~~v~~RIk------------~iv~vL~~fk~~r~~g 47 (83)
...|.-|.... +..|+||.+|++|++ |+-.|.+|-...+.+|
T Consensus 26 ~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 87 (117)
T 2i7k_A 26 SAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPE 87 (117)
T ss_dssp GGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSS
T ss_pred cHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 35576664322 227999999999975 4555555555555555
No 20
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=38.00 E-value=26 Score=21.72 Aligned_cols=13 Identities=15% Similarity=0.516 Sum_probs=11.9
Q ss_pred cCCChHHHHHHHH
Q psy7377 19 KVLSIPDVEQRIK 31 (83)
Q Consensus 19 ~~~dl~~v~~RIk 31 (83)
.|+||.+|++|++
T Consensus 50 ~PmdL~tI~~kl~ 62 (116)
T 3iu5_A 50 QPIDLMKIQQKLK 62 (116)
T ss_dssp SCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 7899999999986
No 21
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=37.74 E-value=76 Score=20.01 Aligned_cols=14 Identities=7% Similarity=0.458 Sum_probs=12.4
Q ss_pred cCCChHHHHHHHHH
Q psy7377 19 KVLSIPDVEQRIKD 32 (83)
Q Consensus 19 ~~~dl~~v~~RIk~ 32 (83)
.++||.+|++||+.
T Consensus 62 ~PmdL~tI~~kl~~ 75 (127)
T 2oss_A 62 TPMDMGTIKKRLEN 75 (127)
T ss_dssp SCCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHc
Confidence 78999999999863
No 22
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=37.46 E-value=15 Score=22.82 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=19.3
Q ss_pred CCChHHHHHHHHHHHHHhhchhh
Q psy7377 20 VLSIPDVEQRIKDVLMVLGNFKQ 42 (83)
Q Consensus 20 ~~dl~~v~~RIk~iv~vL~~fk~ 42 (83)
..|-+.++.++.+-+.||..+++
T Consensus 62 le~~e~L~~kV~EA~~vL~~~~~ 84 (85)
T 1nmr_A 62 LDTPGLLDAKVQEALEVLNRHMN 84 (85)
T ss_dssp CCTHHHHHHHHHHHHHHTTCCCC
T ss_pred HcCHHHHHHHHHHHHHHHHHhhc
Confidence 35778899999999999988754
No 23
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=36.29 E-value=70 Score=19.21 Aligned_cols=49 Identities=18% Similarity=0.269 Sum_probs=35.5
Q ss_pred HHHHHHHhhchhhccC--CC-----CCHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCCC
Q psy7377 30 IKDVLMVLGNFKQYRD--PA-----RSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLD 82 (83)
Q Consensus 30 Ik~iv~vL~~fk~~r~--~g-----rSR~eY~~~L~~Di~~yYgYn~fL~ek~~~LF~~~ 82 (83)
.++-+.||.+|++.+. +| +|.++. ..-++..+.-.+.|+.-|-...|+.
T Consensus 28 Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV----~~~V~~Lf~~hpDLl~~F~~FLP~~ 83 (85)
T 1e91_A 28 YRSFLEILHTYQKEQLHTKGRPFRGMSEEEV----FTEVANLFRGQEDLLSEFGQFLPEA 83 (85)
T ss_dssp HHHHHHHHHHHHHTTCSSSCCCSSCCCHHHH----HHHHHHHTSSCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHccccccccccccCcHHHH----HHHHHHHHccCHHHHHHHHHHCcCc
Confidence 4677899999988653 23 676554 4556677778899999988777763
No 24
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=35.58 E-value=85 Score=19.95 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=20.8
Q ss_pred cCCChHHHHHHHH------------HHHHHhhchhhccCCC
Q psy7377 19 KVLSIPDVEQRIK------------DVLMVLGNFKQYRDPA 47 (83)
Q Consensus 19 ~~~dl~~v~~RIk------------~iv~vL~~fk~~r~~g 47 (83)
.|+||.+|+.||+ |+-.|.+|-+..+.+|
T Consensus 62 ~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~ 102 (130)
T 3k2j_A 62 MPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPN 102 (130)
T ss_dssp SCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 7999999999986 4555555555555554
No 25
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=35.16 E-value=18 Score=23.63 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhchhhccCCCCCHHHHHHHH
Q psy7377 28 QRIKDVLMVLGNFKQYRDPARSRCEYTSLL 57 (83)
Q Consensus 28 ~RIk~iv~vL~~fk~~r~~grSR~eY~~~L 57 (83)
=||++.-.||... -+...|+ +++.++.+
T Consensus 20 frikelkdvl~~l-gl~kqgk-KqdL~Dri 47 (110)
T 2rno_A 20 FRIKELKDILNQL-GLPKQGK-KQDLIDRV 47 (110)
T ss_dssp SCHHHHHHHHHHH-TCCSCCC-HHHHHHHH
T ss_pred hhHHHHHHHHHHh-CCcccCc-cHHHHHHH
Confidence 3888888888776 5666675 44444443
No 26
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=33.00 E-value=28 Score=21.90 Aligned_cols=13 Identities=8% Similarity=0.324 Sum_probs=11.9
Q ss_pred cCCChHHHHHHHH
Q psy7377 19 KVLSIPDVEQRIK 31 (83)
Q Consensus 19 ~~~dl~~v~~RIk 31 (83)
.|+||.+|++|++
T Consensus 60 ~PmdL~tI~~kl~ 72 (124)
T 3mb4_A 60 KPMDMEKIRSHMM 72 (124)
T ss_dssp SCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 7899999999985
No 27
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=31.95 E-value=95 Score=19.39 Aligned_cols=14 Identities=7% Similarity=0.238 Sum_probs=12.4
Q ss_pred cCCChHHHHHHHHH
Q psy7377 19 KVLSIPDVEQRIKD 32 (83)
Q Consensus 19 ~~~dl~~v~~RIk~ 32 (83)
.|+||.+|+.|++.
T Consensus 52 ~PmdL~tI~~kl~~ 65 (123)
T 3hme_A 52 HPMDFGTMKDKIVA 65 (123)
T ss_dssp SCCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHhcc
Confidence 78999999999863
No 28
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=31.25 E-value=37 Score=21.29 Aligned_cols=28 Identities=18% Similarity=0.406 Sum_probs=19.9
Q ss_pred cCCChHHHHHHHH------------HHHHHhhchhhccCC
Q psy7377 19 KVLSIPDVEQRIK------------DVLMVLGNFKQYRDP 46 (83)
Q Consensus 19 ~~~dl~~v~~RIk------------~iv~vL~~fk~~r~~ 46 (83)
.|+||.+|+.||+ |+-.|..|-...+.+
T Consensus 49 ~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 88 (123)
T 3q2e_A 49 TPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPN 88 (123)
T ss_dssp SCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 7899999999985 444555665555553
No 29
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=31.03 E-value=24 Score=21.59 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=32.8
Q ss_pred HHHHHHHhhchhhccC----------CCCCHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCCC
Q psy7377 30 IKDVLMVLGNFKQYRD----------PARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLD 82 (83)
Q Consensus 30 Ik~iv~vL~~fk~~r~----------~grSR~eY~~~L~~Di~~yYgYn~fL~ek~~~LF~~~ 82 (83)
.++-+.||.+|++-+. ++.++.+..++ ++..+.-.+.|+.-|-...|++
T Consensus 31 Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~----V~~LF~~h~DLl~~F~~FLP~~ 89 (89)
T 1g1e_B 31 YKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQ----VARLFKNQEDLLSEFGQFLPDA 89 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHH----HHHHTTTCHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhccCccccccccccccccHHHHHHH----HHHHHccCHHHHHHHHHHCcCC
Confidence 4677889999965321 12344555544 5667777899999988777763
No 30
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=30.78 E-value=26 Score=20.77 Aligned_cols=15 Identities=7% Similarity=0.060 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHHHH
Q psy7377 46 PARSRCEYTSLLLKD 60 (83)
Q Consensus 46 ~grSR~eY~~~L~~D 60 (83)
.|+||++++.+....
T Consensus 31 ~g~srselireAi~~ 45 (80)
T 2k5j_A 31 RNLPRADLLREAVDQ 45 (80)
T ss_dssp HTCCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHH
Confidence 379999999876553
No 31
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=30.43 E-value=1.5e+02 Score=21.14 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=37.5
Q ss_pred cCCChHHHHHHHHHHHHHhhchhhccCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCCCC
Q psy7377 19 KVLSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLLLKDLCTYFSYNEFLMERIMQIFPLDE 83 (83)
Q Consensus 19 ~~~dl~~v~~RIk~iv~vL~~fk~~r~~grSR~eY~~~L~~Di~~yYgYn~fL~ek~~~LF~~~E 83 (83)
..+.|..+..+...+..-|.+- ..+- +-.+|-+.+++=|.. +.=-.-+++.+ .|||++|
T Consensus 29 ~~~~L~~lF~~a~~~~~~le~~---~~~~-~S~~~Q~~v~~~i~~-le~~~~~v~~l-~LFS~NE 87 (243)
T 3qc1_A 29 LLPRLPELFETSKKLLEDVEVA---TEPT-GSRTIQDKVSKGLEL-LEKAAGMLSQL-DLFSRNE 87 (243)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHC---CSCT-TSHHHHHHHHHHHHH-HHHHHHHHHHH-TTTCSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHcC---CCCC-CCHHHHHHHHHHHHH-HHHHHHHHHHh-cccCCCC
Confidence 4567888888777777666542 1222 345788888886664 33334455555 8999987
No 32
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.36 E-value=1e+02 Score=19.68 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=23.0
Q ss_pred ccCCChHHHHHHHH------------HHHHHhhchhhccCCCC
Q psy7377 18 DKVLSIPDVEQRIK------------DVLMVLGNFKQYRDPAR 48 (83)
Q Consensus 18 e~~~dl~~v~~RIk------------~iv~vL~~fk~~r~~gr 48 (83)
..|+||.+|+.|++ |+-.|.+|=...+.+|-
T Consensus 45 k~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s 87 (131)
T 2dkw_A 45 KEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKD 87 (131)
T ss_dssp SSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSS
T ss_pred CCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 37999999999985 56666666666666663
No 33
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.47 E-value=62 Score=20.23 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=11.9
Q ss_pred cCCChHHHHHHHH
Q psy7377 19 KVLSIPDVEQRIK 31 (83)
Q Consensus 19 ~~~dl~~v~~RIk 31 (83)
.|+||.+|++|++
T Consensus 58 ~PmdL~tI~~kl~ 70 (123)
T 2dat_A 58 KPVDFKKIKERIR 70 (123)
T ss_dssp SCCCHHHHHHHHT
T ss_pred CCCCHHHHHHHHh
Confidence 7899999999985
No 34
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=29.29 E-value=82 Score=20.61 Aligned_cols=14 Identities=7% Similarity=0.491 Sum_probs=12.5
Q ss_pred cCCChHHHHHHHHH
Q psy7377 19 KVLSIPDVEQRIKD 32 (83)
Q Consensus 19 ~~~dl~~v~~RIk~ 32 (83)
.|+||.+|++||+.
T Consensus 73 ~PMDL~tI~~kl~~ 86 (154)
T 4alg_A 73 QPMDMGTIKRRLEN 86 (154)
T ss_dssp SCCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhc
Confidence 78999999999864
No 35
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=27.97 E-value=41 Score=21.29 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=21.8
Q ss_pred cCCChHHHHHHHH------------HHHHHhhchhhccCCC
Q psy7377 19 KVLSIPDVEQRIK------------DVLMVLGNFKQYRDPA 47 (83)
Q Consensus 19 ~~~dl~~v~~RIk------------~iv~vL~~fk~~r~~g 47 (83)
.|+||.+|+.|++ |+-.|.+|-+..+.+|
T Consensus 49 ~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 89 (130)
T 3dai_A 49 QPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDR 89 (130)
T ss_dssp SCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSS
T ss_pred CCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 7899999999984 4556666666666665
No 36
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=27.58 E-value=39 Score=21.42 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=20.3
Q ss_pred cCCChHHHHHHHH------------HHHHHhhchhhccCCC
Q psy7377 19 KVLSIPDVEQRIK------------DVLMVLGNFKQYRDPA 47 (83)
Q Consensus 19 ~~~dl~~v~~RIk------------~iv~vL~~fk~~r~~g 47 (83)
.|+||.+|++|++ |+-.|.+|=...+.+|
T Consensus 57 ~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~ 97 (129)
T 2grc_A 57 KPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEG 97 (129)
T ss_dssp SCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 7899999999985 4445555555555554
No 37
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=27.03 E-value=73 Score=16.49 Aligned_cols=15 Identities=13% Similarity=0.208 Sum_probs=12.3
Q ss_pred CCCHHHHHHHHHHHH
Q psy7377 47 ARSRCEYTSLLLKDL 61 (83)
Q Consensus 47 grSR~eY~~~L~~Di 61 (83)
|+||++++.....+.
T Consensus 32 g~s~s~~ir~ai~~~ 46 (55)
T 2k9i_A 32 NLTLSDVCRLAIKEY 46 (55)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 889999998876654
No 38
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=26.79 E-value=1e+02 Score=19.48 Aligned_cols=13 Identities=0% Similarity=0.416 Sum_probs=12.0
Q ss_pred cCCChHHHHHHHH
Q psy7377 19 KVLSIPDVEQRIK 31 (83)
Q Consensus 19 ~~~dl~~v~~RIk 31 (83)
.|+||.+|+.|++
T Consensus 66 ~PmDL~tI~~kl~ 78 (130)
T 2ouo_A 66 HPMDMSTIKSKLE 78 (130)
T ss_dssp SCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 7899999999986
No 39
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=26.34 E-value=28 Score=21.06 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=29.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhccc-----HHHHHHHHhcCCCC
Q psy7377 43 YRDPARSRCEYTSLLLKDLCTYFSYN-----EFLMERIMQIFPLD 82 (83)
Q Consensus 43 ~r~~grSR~eY~~~L~~Di~~yYgYn-----~fL~ek~~~LF~~~ 82 (83)
.+..|+...+=-+.-+++||.|++|- +..+.-+|+=|-|+
T Consensus 25 y~~~~k~kPe~WE~A~~~I~~~~Ey~~l~~E~~v~~qif~~F~P~ 69 (69)
T 2kfd_A 25 YTKTGKPKPSTWDLASKELGESLEYKALGDEDNIRRQIFEDFKPE 69 (69)
T ss_dssp SCSSSSCCCSSHHHHHHHHTTSTTSGGGTTSHHHHHHHHHHHCCC
T ss_pred HcccCCCCCccHHHHHHHHccCHHHHHhhccHHHHHHHHHhcCCC
Confidence 34445555556788899999999995 36788888877764
No 40
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A
Probab=25.79 E-value=92 Score=17.29 Aligned_cols=56 Identities=14% Similarity=0.322 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhchh-hccCC-CCCHHHHHHHHHHHHHHHh--cccHHHHHHHHhcCCC
Q psy7377 26 VEQRIKDVLMVLGNFK-QYRDP-ARSRCEYTSLLLKDLCTYF--SYNEFLMERIMQIFPL 81 (83)
Q Consensus 26 v~~RIk~iv~vL~~fk-~~r~~-grSR~eY~~~L~~Di~~yY--gYn~fL~ek~~~LF~~ 81 (83)
+...+.++..+...|- .-+.. -.|+.++...|.+-+..+. ..++.-++.++..+..
T Consensus 8 ~~~~~~~l~~~F~~~Dd~d~~G~~I~~~el~~~l~~~~~~~~~~~~~~~~~~~l~~~~D~ 67 (99)
T 1qls_A 8 TERCIESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDL 67 (99)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCTTCBCHHHHHHHHTTTSHHHHHHCCCTHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCeeCHHHHHHHHHHHcchhccccCCHHHHHHHHHHhCC
Confidence 4455666666666664 33332 3699998888875454332 3566667777766543
No 41
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=25.38 E-value=1.4e+02 Score=19.28 Aligned_cols=13 Identities=15% Similarity=0.565 Sum_probs=12.0
Q ss_pred cCCChHHHHHHHH
Q psy7377 19 KVLSIPDVEQRIK 31 (83)
Q Consensus 19 ~~~dl~~v~~RIk 31 (83)
.|+||.+|++||+
T Consensus 111 ~PmdL~tI~~kl~ 123 (174)
T 2ri7_A 111 EPMDLATMEERVQ 123 (174)
T ss_dssp SCCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHH
Confidence 7899999999986
No 42
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=24.54 E-value=34 Score=23.31 Aligned_cols=13 Identities=15% Similarity=0.539 Sum_probs=12.0
Q ss_pred cCCChHHHHHHHH
Q psy7377 19 KVLSIPDVEQRIK 31 (83)
Q Consensus 19 ~~~dl~~v~~RIk 31 (83)
.|+||.+|+.||+
T Consensus 119 ~PmdL~tI~~kl~ 131 (207)
T 3u5n_A 119 KPMDLSTVKKKLQ 131 (207)
T ss_dssp SCCCHHHHHHHHS
T ss_pred CccCHHHHHHHHh
Confidence 7899999999986
No 43
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=24.47 E-value=1.6e+02 Score=19.45 Aligned_cols=29 Identities=17% Similarity=0.406 Sum_probs=19.8
Q ss_pred cCCChHHHHHHHHH------------HHHHhhchhhccCCC
Q psy7377 19 KVLSIPDVEQRIKD------------VLMVLGNFKQYRDPA 47 (83)
Q Consensus 19 ~~~dl~~v~~RIk~------------iv~vL~~fk~~r~~g 47 (83)
.|+||.+|+.|++. +-.|..|-...+.+|
T Consensus 62 ~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~ 102 (166)
T 3fkm_X 62 NPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSN 102 (166)
T ss_dssp SCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHSSCTT
T ss_pred CCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 78999999999864 444455555555554
No 44
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=24.08 E-value=1.3e+02 Score=18.38 Aligned_cols=29 Identities=17% Similarity=0.488 Sum_probs=20.0
Q ss_pred cCCChHHHHHHHH------------HHHHHhhchhhccCCC
Q psy7377 19 KVLSIPDVEQRIK------------DVLMVLGNFKQYRDPA 47 (83)
Q Consensus 19 ~~~dl~~v~~RIk------------~iv~vL~~fk~~r~~g 47 (83)
.|+||.+|+.|++ |+-.|.+|-...+.+|
T Consensus 52 ~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (117)
T 3g0l_A 52 KPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDD 92 (117)
T ss_dssp SCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSS
T ss_pred CCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 7899999999984 4445555555555554
No 45
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=23.94 E-value=45 Score=21.68 Aligned_cols=18 Identities=28% Similarity=0.707 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhccc
Q psy7377 51 CEYTSLLLKDLCTYFSYN 68 (83)
Q Consensus 51 ~eY~~~L~~Di~~yYgYn 68 (83)
..|-..|...+|.|||-.
T Consensus 58 nSy~RllvHrvAe~ygL~ 75 (124)
T 1whr_A 58 TSYHRMLLHRVAAYFGMD 75 (124)
T ss_dssp CHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhCcC
Confidence 789999999999999953
No 46
>4dnn_A Protein quaking, MQKI, QKI; helix-turn-helix, hydrophobic homodimer interface, perpendic stacking of protomers, developmental protein, RNA-binding; HET: MSE; 2.10A {Mus musculus}
Probab=23.90 E-value=36 Score=19.81 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHHH
Q psy7377 49 SRCEYTSLLLKDLC 62 (83)
Q Consensus 49 SR~eY~~~L~~Di~ 62 (83)
|-.||+.+|.+|=.
T Consensus 2 s~~eYL~qLlkdkk 15 (56)
T 4dnn_A 2 STPDYLMQLMNDKK 15 (56)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 45799999998854
No 47
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=23.66 E-value=55 Score=20.72 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=19.7
Q ss_pred cCCChHHHHHHHH------------HHHHHhhchhhccCC
Q psy7377 19 KVLSIPDVEQRIK------------DVLMVLGNFKQYRDP 46 (83)
Q Consensus 19 ~~~dl~~v~~RIk------------~iv~vL~~fk~~r~~ 46 (83)
.|+||.+|+.||+ |+-.|..|-...+.+
T Consensus 60 ~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 99 (135)
T 3mb3_A 60 TPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPS 99 (135)
T ss_dssp SCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 7899999999985 444555555555554
No 48
>1txj_A Translationally controlled tumour-associated protein (TCTP) from plasmodium knowlesi,...; structural genomics consortium, SGC; 2.00A {Plasmodium knowlesi} SCOP: b.88.1.2 PDB: 3p3k_A
Probab=23.35 E-value=16 Score=25.43 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=21.2
Q ss_pred HHHHHhhchhhccCCCCCHHHHHHHHHHHHHH
Q psy7377 32 DVLMVLGNFKQYRDPARSRCEYTSLLLKDLCT 63 (83)
Q Consensus 32 ~iv~vL~~fk~~r~~grSR~eY~~~L~~Di~~ 63 (83)
.++.|.-+| ++-+.+-++++|+.-|+..+..
T Consensus 67 ~vvdIV~~~-rL~et~f~Kk~y~~yiK~YmK~ 97 (171)
T 1txj_A 67 QVIDIVDSF-QLTSTSLSKKEYSVYIKNYMQK 97 (171)
T ss_dssp EEEHHHHHH-TCEEECCCHHHHHHHHHHHHHH
T ss_pred ecceEEEec-ceeecCCCHHHHHHHHHHHHHH
Confidence 445666666 6666677888888887766543
No 49
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=23.08 E-value=1.4e+02 Score=18.48 Aligned_cols=29 Identities=17% Similarity=0.452 Sum_probs=20.7
Q ss_pred cCCChHHHHHHHH------------HHHHHhhchhhccCCC
Q psy7377 19 KVLSIPDVEQRIK------------DVLMVLGNFKQYRDPA 47 (83)
Q Consensus 19 ~~~dl~~v~~RIk------------~iv~vL~~fk~~r~~g 47 (83)
.|+||.+|+.|++ |+-.|.+|=...+.+|
T Consensus 52 ~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 92 (121)
T 1e6i_A 52 EPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 92 (121)
T ss_dssp SCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 7899999999986 4555555555555555
No 50
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=21.80 E-value=1.4e+02 Score=18.06 Aligned_cols=14 Identities=7% Similarity=0.342 Sum_probs=12.3
Q ss_pred cCCChHHHHHHHHH
Q psy7377 19 KVLSIPDVEQRIKD 32 (83)
Q Consensus 19 ~~~dl~~v~~RIk~ 32 (83)
.|+||.+|++|++.
T Consensus 46 ~PmdL~tI~~kl~~ 59 (112)
T 3d7c_A 46 FPIDLKTMTERLRS 59 (112)
T ss_dssp SCCCHHHHHHHHHT
T ss_pred CCcCHHHHHHHHcC
Confidence 78999999999863
No 51
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=21.63 E-value=1.6e+02 Score=18.61 Aligned_cols=14 Identities=7% Similarity=0.548 Sum_probs=12.5
Q ss_pred cCCChHHHHHHHHH
Q psy7377 19 KVLSIPDVEQRIKD 32 (83)
Q Consensus 19 ~~~dl~~v~~RIk~ 32 (83)
.|+||.+|++||+.
T Consensus 58 ~PmDL~tI~~kL~~ 71 (135)
T 2yyn_A 58 NPMDLSTIKKRLQE 71 (135)
T ss_dssp SCCCHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhc
Confidence 78999999999973
No 52
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=20.94 E-value=1.4e+02 Score=20.99 Aligned_cols=29 Identities=24% Similarity=0.531 Sum_probs=20.5
Q ss_pred cCCChHHHHHHHH------------HHHHHhhchhhccCCC
Q psy7377 19 KVLSIPDVEQRIK------------DVLMVLGNFKQYRDPA 47 (83)
Q Consensus 19 ~~~dl~~v~~RIk------------~iv~vL~~fk~~r~~g 47 (83)
.|+||.+|+.|++ |+-.|.+|-...+.+|
T Consensus 176 ~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~ 216 (265)
T 3uv5_A 176 NPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE 216 (265)
T ss_dssp SCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTT
T ss_pred CcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 7899999999985 4445555555555555
No 53
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=20.88 E-value=49 Score=22.44 Aligned_cols=14 Identities=14% Similarity=0.413 Sum_probs=12.1
Q ss_pred cCCChHHHHHHHHH
Q psy7377 19 KVLSIPDVEQRIKD 32 (83)
Q Consensus 19 ~~~dl~~v~~RIk~ 32 (83)
.|+||.+|+.|++.
T Consensus 113 ~PMDL~tIk~kL~~ 126 (189)
T 2ro1_A 113 GTLDLTLIRARLQE 126 (189)
T ss_dssp CCCCHHHHHHHHHT
T ss_pred CcccHHHHHHHHhc
Confidence 48999999999874
No 54
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=20.39 E-value=33 Score=22.45 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=24.1
Q ss_pred CChHHHHHHHHHHHHHhhchhhccCCCCCHHHHHHHH
Q psy7377 21 LSIPDVEQRIKDVLMVLGNFKQYRDPARSRCEYTSLL 57 (83)
Q Consensus 21 ~dl~~v~~RIk~iv~vL~~fk~~r~~grSR~eY~~~L 57 (83)
.+++..++.|.+++.-| .+......+..|+++|
T Consensus 145 ~~~~~~~~~~~~l~~~L----Gl~~~~~~~~sY~eLL 177 (179)
T 3n10_A 145 TELDKLKAECRDFANTF----GLQVDQQEPRSYRQLL 177 (179)
T ss_dssp GGHHHHHHHHHHHHHHH----TCCGGGBCCSCHHHHH
T ss_pred ccHHHHHHHHHHHHHHc----CcChhhcceecHHHHh
Confidence 45777888888888777 4445566778888877
No 55
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=20.28 E-value=40 Score=21.71 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=13.6
Q ss_pred CCChHHHHHHHHHHHH
Q psy7377 20 VLSIPDVEQRIKDVLM 35 (83)
Q Consensus 20 ~~dl~~v~~RIk~iv~ 35 (83)
=||...|++||++.|.
T Consensus 74 FPd~keLkq~VRd~i~ 89 (107)
T 3dex_A 74 FPEPTAVKRLVRDRVA 89 (107)
T ss_dssp SCCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHhC
Confidence 4899999999998763
No 56
>3qth_A Uncharacterized protein; DINB/YFIT-like putative metalloenzymes, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.20A {Colwellia psychrerythraea}
Probab=20.20 E-value=57 Score=22.50 Aligned_cols=21 Identities=5% Similarity=0.108 Sum_probs=19.1
Q ss_pred CCChHHHHHHHHHHHHHhhch
Q psy7377 20 VLSIPDVEQRIKDVLMVLGNF 40 (83)
Q Consensus 20 ~~dl~~v~~RIk~iv~vL~~f 40 (83)
..+...++.||..++..|+.+
T Consensus 82 e~tfa~L~arI~~ti~~L~~~ 102 (176)
T 3qth_A 82 IDSFCGLKTYVVTAIDYINKL 102 (176)
T ss_dssp CSSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999988
Done!