BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7378
(90 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 41 GGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFGTEGFVN 85
GG LVYSTCS+ PEENE V+ +AL DV+L+P L +G N
Sbjct: 239 GGILVYSTCSLEPEENEFVIQWALDNFDVELLP--LKYGEPALTN 281
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + TGG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
Length = 274
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/32 (62%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 42 GYLVYSTCSILPEENEAVVNYALRKR-DVKLV 72
G LVYSTCS+ EENE V+ Y L+KR DV+L+
Sbjct: 205 GELVYSTCSMEVEENEEVIKYILQKRNDVELI 236
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 41 GGYLVYSTCSILPEENEAVVNYAL------RKRDVKLVP 73
GG LVYSTC+ PEENE VV + L R D +L P
Sbjct: 222 GGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLEDARLHP 260
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 41 GGYLVYSTCSILPEENEAVVNYAL------RKRDVKLVP 73
GG LVYSTC+ PEENE VV + L R D +L P
Sbjct: 222 GGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLEDARLHP 260
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 41 GGYLVYSTCSILPEENEAVVNYAL------RKRDVKLVP 73
GG LVYSTC+ PEENE VV + L R D +L P
Sbjct: 222 GGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLEDARLHP 260
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 41 GGYLVYSTCSILPEENEAVVNYALRKR-DVKLVP 73
GG L+Y+TCSI EENE + + L + KLVP
Sbjct: 382 GGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLVP 415
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 33.5 bits (75), Expect = 0.028, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 42 GYLVYSTCSILPEENEAVVNYALRKRDVKL 71
G L+YSTC+ PEENE ++++ + V +
Sbjct: 228 GQLIYSTCTFAPEENEEIISWLVENYPVTI 257
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 33.5 bits (75), Expect = 0.035, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 39 PTGGYLVYSTCSILPEENEAVVNYALRK 66
P+ LVYSTCS+ EENE VV AL++
Sbjct: 225 PSLQRLVYSTCSLCQEENEDVVRDALQQ 252
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 32.7 bits (73), Expect = 0.054, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 29 EAID-CLNARSPTGGYLVYSTCSILPEENEAV 59
E ID +A P GG LVYSTC++ EENEAV
Sbjct: 227 ELIDSAFHALRP-GGTLVYSTCTLNQEENEAV 257
>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|C Chain C, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|D Chain D, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|F Chain F, Human Mterf4-Nsun4 Protein Complex
Length = 360
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 41 GGYLVYSTCSILPEENEAVVNYAL 64
GG++VYSTCS+ +NE VV A+
Sbjct: 278 GGHVVYSTCSLSHLQNEYVVQGAI 301
>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 359
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 41 GGYLVYSTCSILPEENEAVVNYAL 64
GG++VYSTCS+ +NE VV A+
Sbjct: 277 GGHVVYSTCSLSHLQNEYVVQGAI 300
>pdb|3F0H|A Chain A, Crystal Structure Of Aminotransferase (Rer070207000802)
From Eubacterium Rectale At 1.70 A Resolution
Length = 376
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 36 ARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFG 79
A++P G V+ TCS EAVV K+D LV G FG
Sbjct: 65 AKAPEGSKAVFXTCSS-TGSXEAVVXNCFTKKDKVLVIDGGSFG 107
>pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From
Silicibacter Pomeroyi
Length = 391
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 39 PTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFGTE 81
P G + VY+ S L +++ A L K V + P GLDF E
Sbjct: 310 PDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTP-GLDFDPE 351
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,605,017
Number of Sequences: 62578
Number of extensions: 90441
Number of successful extensions: 185
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 14
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)