BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7378
(90 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens
GN=NOP2 PE=1 SV=2
Length = 812
Score = 95.1 bits (235), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/65 (66%), Positives = 53/65 (81%)
Query: 26 VILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFGTEGFVN 85
++L AID +NA S TGGYLVY TCSI EENE VV+YAL+KR+V+LVPTGLDFG EGF
Sbjct: 494 LLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTR 553
Query: 86 YRQNK 90
+R+ +
Sbjct: 554 FRERR 558
>sp|Q922K7|NOP2_MOUSE Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus
GN=Nop2 PE=2 SV=1
Length = 793
Score = 92.0 bits (227), Expect = 8e-19, Method: Composition-based stats.
Identities = 42/65 (64%), Positives = 52/65 (80%)
Query: 26 VILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFGTEGFVN 85
++L AID +NA S TGGYLVY TCSI EENE VV+YAL+KR+V+LVPTGLDFG EGF
Sbjct: 479 LLLSAIDSVNAASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTR 538
Query: 86 YRQNK 90
++ +
Sbjct: 539 FQARR 543
>sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP8B7.20c PE=1 SV=1
Length = 608
Score = 85.9 bits (211), Expect = 7e-17, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Query: 14 RALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR-DVKLV 72
R T+ ++L AID +NA S TGG++VYSTCSI +E+EAV+ YAL+KR +VKLV
Sbjct: 438 RDFDTLSHLQRQLLLSAIDSVNADSKTGGFIVYSTCSITVDEDEAVIQYALKKRPNVKLV 497
Query: 73 PTGLDFGTEGFVNYRQNK 90
TGL+FG EGF +R+ +
Sbjct: 498 STGLEFGREGFTRFREKR 515
>sp|P40991|NOP2_YEAST Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NOP2 PE=1
SV=1
Length = 618
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 26 VILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR-DVKLVPTGLDFGTEGFV 84
++L AID ++ S GG +VYSTCS+ EE+EAV++YALRKR +VKLV TGL G E F
Sbjct: 455 LLLSAIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFT 514
Query: 85 NYRQNK 90
+YR K
Sbjct: 515 SYRGKK 520
>sp|P45679|RSMB_COXBU Ribosomal RNA small subunit methyltransferase B OS=Coxiella
burnetii (strain RSA 493 / Nine Mile phase I) GN=rsmB
PE=3 SV=1
Length = 430
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 28 LEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRD-VKLVPTGLDFGTE 81
L+ ++ L GG+L+YSTCS+LP+ENE V+ L D V+L PT + G +
Sbjct: 350 LQLLNALWTVLKAGGFLLYSTCSVLPDENEKVIEEFLSTHDKVELSPTNVHGGLQ 404
>sp|A9MN78|RSMB_SALAR Ribosomal RNA small subunit methyltransferase B OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rsmB PE=3 SV=1
Length = 429
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + R GG LVY+TCS+LPEEN A +N L R D L TG
Sbjct: 355 EILDTVWPRLKPGGTLVYATCSVLPEENSAQINAFLQRTPDAALSETG 402
>sp|Q6D000|RSMB_ERWCT Ribosomal RNA small subunit methyltransferase B OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=rsmB PE=3 SV=1
Length = 429
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTG 75
E +D + TGG +VY+TCSILP+EN + V + R D LV TG
Sbjct: 355 EILDAIWPHLKTGGTMVYATCSILPQENTQQVTGFLSRHADAALVDTG 402
>sp|Q9V106|TRCM_PYRAB tRNA (cytosine(49)-C(5))-methyltransferase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB06230 PE=1 SV=1
Length = 311
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 41 GGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFGT 80
GG LVYSTC++ P ENE VV++ L+K D KL L T
Sbjct: 231 GGVLVYSTCTVDPLENEEVVDFLLQKTDAKLEKVKLPLKT 270
>sp|C6DFR7|RSMB_PECCP Ribosomal RNA small subunit methyltransferase B OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=rsmB PE=3
SV=1
Length = 429
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTG 75
E D + GG +VY+TCSILP+EN + V ++ R D LV TG
Sbjct: 355 EIFDAIWPHLKVGGTMVYATCSILPQENAQQVTDFLTRHADATLVDTG 402
>sp|A8GKG7|RSMB_SERP5 Ribosomal RNA small subunit methyltransferase B OS=Serratia
proteamaculans (strain 568) GN=rsmB PE=3 SV=1
Length = 429
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTG 75
E I+ + +GG +VY+TCSILP EN E V + R D +LV TG
Sbjct: 355 EIIEAIWPHLKSGGVMVYATCSILPAENAEQVSAFLQRHADARLVETG 402
>sp|P36929|RSMB_ECOLI Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12) GN=rsmB PE=1 SV=2
Length = 429
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + TGG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|B1IQ11|RSMB_ECOLC Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmB PE=3 SV=1
Length = 429
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + TGG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|A8A593|RSMB_ECOHS Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O9:H4 (strain HS) GN=rsmB PE=3 SV=1
Length = 429
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + TGG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|B1X6E1|RSMB_ECODH Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12 / DH10B) GN=rsmB PE=3 SV=1
Length = 429
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + TGG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|C4ZUE3|RSMB_ECOBW Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmB PE=3 SV=1
Length = 429
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + TGG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|A1JRZ3|RSMB_YERE8 Ribosomal RNA small subunit methyltransferase B OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=rsmB PE=3 SV=1
Length = 429
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTG 75
E I+ + + GG +VY+TCSILPEEN + + + R + LV TG
Sbjct: 355 EIIEAIWPKLKKGGVMVYATCSILPEENQQQIATFLQRHSEADLVETG 402
>sp|Q8FD12|RSMB_ECOL6 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmB PE=3
SV=1
Length = 429
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|Q0TCH3|RSMB_ECOL5 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|B7N0S9|RSMB_ECO81 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O81 (strain ED1a) GN=rsmB PE=3 SV=1
Length = 429
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWSHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|A8AQI3|RSMB_CITK8 Ribosomal RNA small subunit methyltransferase B OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=rsmB PE=3 SV=1
Length = 428
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTG 75
E +D + +GG LVY+TCS+LPEEN + ++ + R D L TG
Sbjct: 354 EILDAIWPHLKSGGTLVYATCSVLPEENSQQILAFLQRTPDATLTGTG 401
>sp|Q8ZLM5|RSMB_SALTY Ribosomal RNA small subunit methyltransferase B OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rsmB PE=3 SV=1
Length = 429
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTG 75
E +D + R GG LVY+TCS+LPEEN + + + R D L TG
Sbjct: 355 EILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETG 402
>sp|B4TXB2|RSMB_SALSV Ribosomal RNA small subunit methyltransferase B OS=Salmonella
schwarzengrund (strain CVM19633) GN=rsmB PE=3 SV=1
Length = 429
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTG 75
E +D + R GG LVY+TCS+LPEEN + + + R D L TG
Sbjct: 355 EILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETG 402
>sp|C0PZV1|RSMB_SALPC Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi C (strain RKS4594) GN=rsmB PE=3 SV=1
Length = 429
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTG 75
E +D + R GG LVY+TCS+LPEEN + + + R D L TG
Sbjct: 355 EILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETG 402
>sp|A9N8B3|RSMB_SALPB Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rsmB PE=3
SV=1
Length = 429
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTG 75
E +D + R GG LVY+TCS+LPEEN + + + R D L TG
Sbjct: 355 EILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETG 402
>sp|B4TJX9|RSMB_SALHS Ribosomal RNA small subunit methyltransferase B OS=Salmonella
heidelberg (strain SL476) GN=rsmB PE=3 SV=1
Length = 429
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTG 75
E +D + R GG LVY+TCS+LPEEN + + + R D L TG
Sbjct: 355 EILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETG 402
>sp|B5RH47|RSMB_SALG2 Ribosomal RNA small subunit methyltransferase B OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=rsmB PE=3
SV=1
Length = 429
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTG 75
E +D + R GG LVY+TCS+LPEEN + + + R D L TG
Sbjct: 355 EILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETG 402
>sp|B5R1E5|RSMB_SALEP Ribosomal RNA small subunit methyltransferase B OS=Salmonella
enteritidis PT4 (strain P125109) GN=rsmB PE=3 SV=1
Length = 429
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTG 75
E +D + R GG LVY+TCS+LPEEN + + + R D L TG
Sbjct: 355 EILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETG 402
>sp|B5FJI4|RSMB_SALDC Ribosomal RNA small subunit methyltransferase B OS=Salmonella
dublin (strain CT_02021853) GN=rsmB PE=3 SV=1
Length = 429
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTG 75
E +D + R GG LVY+TCS+LPEEN + + + R D L TG
Sbjct: 355 EILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETG 402
>sp|Q57J62|RSMB_SALCH Ribosomal RNA small subunit methyltransferase B OS=Salmonella
choleraesuis (strain SC-B67) GN=rsmB PE=3 SV=1
Length = 429
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTG 75
E +D + R GG LVY+TCS+LPEEN + + + R D L TG
Sbjct: 355 EILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETG 402
>sp|B5BGV5|RSMB_SALPK Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi A (strain AKU_12601) GN=rsmB PE=3 SV=1
Length = 429
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTG 75
E +D + R GG LVY+TCS+LPEEN + + + R D L TG
Sbjct: 355 EILDTVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETG 402
>sp|Q5PIT6|RSMB_SALPA Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=rsmB PE=3
SV=1
Length = 429
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTG 75
E +D + R GG LVY+TCS+LPEEN + + + R D L TG
Sbjct: 355 EILDTVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQRTPDAALSETG 402
>sp|Q1R644|RSMB_ECOUT Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWSHLKSGGTLVYATCSMLPEENSLQIKAFLQRTADAELCETG 402
>sp|A1AGI0|RSMB_ECOK1 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O1:K1 / APEC GN=rsmB PE=3 SV=1
Length = 429
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWSHLKSGGTLVYATCSMLPEENSLQIKAFLQRTADAELCETG 402
>sp|B7MCQ4|RSMB_ECO45 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWSHLKSGGTLVYATCSMLPEENSLQIKAFLQRTADAELCETG 402
>sp|Q3YWX1|RSMB_SHISS Ribosomal RNA small subunit methyltransferase B OS=Shigella sonnei
(strain Ss046) GN=rsmB PE=3 SV=1
Length = 429
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|Q7UBD3|RSMB_SHIFL Ribosomal RNA small subunit methyltransferase B OS=Shigella
flexneri GN=rsmB PE=3 SV=1
Length = 429
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|Q0T014|RSMB_SHIF8 Ribosomal RNA small subunit methyltransferase B OS=Shigella
flexneri serotype 5b (strain 8401) GN=rsmB PE=3 SV=2
Length = 429
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|Q32B61|RSMB_SHIDS Ribosomal RNA small subunit methyltransferase B OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rsmB PE=3 SV=1
Length = 429
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|Q31VY8|RSMB_SHIBS Ribosomal RNA small subunit methyltransferase B OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmB PE=3 SV=1
Length = 429
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|B2U2Q6|RSMB_SHIB3 Ribosomal RNA small subunit methyltransferase B OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rsmB PE=3
SV=1
Length = 429
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|B1LGP5|RSMB_ECOSM Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|B6I202|RSMB_ECOSE Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain SE11) GN=rsmB PE=3 SV=1
Length = 429
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|B7M0Z4|RSMB_ECO8A Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O8 (strain IAI1) GN=rsmB PE=3 SV=1
Length = 429
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|B7NLK8|RSMB_ECO7I Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|B5YT08|RSMB_ECO5E Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|Q8XEE5|RSMB_ECO57 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O157:H7 GN=rsmB PE=3 SV=1
Length = 429
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|B7LHZ0|RSMB_ECO55 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|B7UK12|RSMB_ECO27 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|A7ZSH7|RSMB_ECO24 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTG 75
E +D + +GG LVY+TCS+LPEEN + L R D +L TG
Sbjct: 355 EILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETG 402
>sp|Q8Z1X1|RSMB_SALTI Ribosomal RNA small subunit methyltransferase B OS=Salmonella typhi
GN=rsmB PE=3 SV=1
Length = 429
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 29 EAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTG 75
E +D + R GG LVY+TCS+LPEEN + + + R D L TG
Sbjct: 355 EILDAVWPRLKPGGTLVYATCSVLPEENRDQIKAFLQRTPDAALSETG 402
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,448,035
Number of Sequences: 539616
Number of extensions: 1140771
Number of successful extensions: 2378
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2205
Number of HSP's gapped (non-prelim): 180
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)