Query psy7378
Match_columns 90
No_of_seqs 104 out of 1006
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 16:42:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1122|consensus 99.8 2.9E-19 6.3E-24 141.8 7.8 68 11-82 338-406 (460)
2 COG0144 Sun tRNA and rRNA cyto 99.8 9.8E-19 2.1E-23 135.2 8.3 59 12-74 256-315 (355)
3 PRK11933 yebU rRNA (cytosine-C 99.7 1.5E-17 3.4E-22 133.0 7.7 57 12-72 210-268 (470)
4 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.7 5.3E-18 1.1E-22 127.5 2.3 59 13-75 184-247 (283)
5 TIGR00446 nop2p NOL1/NOP2/sun 99.7 2.8E-16 6E-21 116.5 8.3 57 12-72 167-224 (264)
6 PRK14901 16S rRNA methyltransf 99.6 5.2E-16 1.1E-20 121.9 7.8 71 12-86 352-428 (434)
7 TIGR00563 rsmB ribosomal RNA s 99.6 1.1E-15 2.5E-20 119.7 8.3 71 12-86 336-421 (426)
8 PRK14903 16S rRNA methyltransf 99.6 1.5E-15 3.2E-20 119.9 8.3 59 12-74 334-393 (431)
9 PRK14904 16S rRNA methyltransf 99.5 1.9E-14 4E-19 113.5 8.4 57 12-72 345-402 (445)
10 PRK10901 16S rRNA methyltransf 99.5 5.3E-14 1.1E-18 110.4 8.5 71 12-86 340-422 (427)
11 KOG2198|consensus 99.5 3.9E-14 8.5E-19 111.0 5.5 56 15-74 267-324 (375)
12 PRK14902 16S rRNA methyltransf 99.5 1.9E-13 4.1E-18 107.5 8.4 59 12-74 347-406 (444)
13 KOG2360|consensus 98.8 3.6E-09 7.8E-14 83.9 3.8 61 8-73 309-371 (413)
14 TIGR00537 hemK_rel_arch HemK-r 95.7 0.042 9.1E-07 37.9 5.8 46 26-74 118-163 (179)
15 PRK15128 23S rRNA m(5)C1962 me 95.4 0.054 1.2E-06 42.9 6.1 46 28-73 319-368 (396)
16 PRK00377 cbiT cobalt-precorrin 95.3 0.034 7.3E-07 39.2 4.3 39 28-69 125-163 (198)
17 PF12847 Methyltransf_18: Meth 94.3 0.02 4.3E-07 35.8 1.0 20 30-49 93-112 (112)
18 PRK14968 putative methyltransf 93.9 0.21 4.6E-06 33.8 5.5 46 26-74 126-171 (188)
19 COG2242 CobL Precorrin-6B meth 93.3 0.19 4.1E-06 36.7 4.7 44 28-74 115-159 (187)
20 PRK11188 rrmJ 23S rRNA methylt 92.8 0.63 1.4E-05 33.4 6.8 62 25-89 142-207 (209)
21 PRK14967 putative methyltransf 92.0 0.61 1.3E-05 33.4 5.9 43 25-70 136-178 (223)
22 PRK08287 cobalt-precorrin-6Y C 92.0 0.32 7E-06 33.7 4.3 38 29-69 112-149 (187)
23 TIGR03533 L3_gln_methyl protei 91.7 0.75 1.6E-05 34.6 6.3 54 25-85 228-281 (284)
24 KOG1540|consensus 90.9 0.22 4.8E-06 38.5 2.7 42 30-74 196-237 (296)
25 PRK00517 prmA ribosomal protei 90.8 0.98 2.1E-05 33.0 6.1 45 27-74 192-236 (250)
26 PF10354 DUF2431: Domain of un 90.7 1.5 3.2E-05 30.8 6.6 53 21-74 98-150 (166)
27 TIGR03704 PrmC_rel_meth putati 90.6 0.71 1.5E-05 34.1 5.2 42 25-70 193-234 (251)
28 PF13659 Methyltransf_26: Meth 89.6 0.14 3.1E-06 32.2 0.7 25 26-50 93-117 (117)
29 PRK07402 precorrin-6B methylas 89.4 0.56 1.2E-05 32.8 3.7 44 28-74 122-168 (196)
30 TIGR00138 gidB 16S rRNA methyl 87.8 2.6 5.7E-05 29.6 6.2 44 29-76 123-169 (181)
31 PF08241 Methyltransf_11: Meth 87.6 0.24 5.2E-06 29.3 0.7 18 29-46 78-95 (95)
32 COG0275 Predicted S-adenosylme 87.6 1 2.2E-05 35.3 4.3 45 20-67 216-260 (314)
33 PF10672 Methyltrans_SAM: S-ad 87.5 0.55 1.2E-05 36.0 2.8 26 31-56 221-246 (286)
34 TIGR01177 conserved hypothetic 87.5 0.72 1.6E-05 35.1 3.4 27 26-52 272-298 (329)
35 TIGR03534 RF_mod_PrmC protein- 87.4 1.8 4E-05 30.6 5.3 44 26-73 195-238 (251)
36 COG4123 Predicted O-methyltran 87.0 1 2.3E-05 34.0 4.0 55 12-70 133-188 (248)
37 PRK00121 trmB tRNA (guanine-N( 86.9 1.4 3.1E-05 31.2 4.5 38 29-72 137-177 (202)
38 CHL00073 chlN photochlorophyll 86.6 1.4 2.9E-05 36.0 4.7 61 14-75 73-135 (457)
39 COG2227 UbiG 2-polyprenyl-3-me 86.4 0.7 1.5E-05 35.0 2.8 21 30-50 143-163 (243)
40 COG1092 Predicted SAM-dependen 86.1 1.2 2.5E-05 35.8 4.0 36 30-65 318-355 (393)
41 TIGR00438 rrmJ cell division p 86.0 2.9 6.4E-05 28.9 5.6 22 27-48 125-146 (188)
42 PRK11783 rlmL 23S rRNA m(2)G24 85.5 1.8 4E-05 36.5 5.1 41 30-74 638-678 (702)
43 TIGR01934 MenG_MenH_UbiE ubiqu 85.4 2.7 5.8E-05 29.0 5.1 23 29-51 124-146 (223)
44 PRK11036 putative S-adenosyl-L 85.3 1.8 4E-05 31.4 4.5 20 29-48 130-149 (255)
45 PRK04266 fibrillarin; Provisio 85.1 2.5 5.4E-05 31.0 5.1 45 30-74 158-208 (226)
46 PF12147 Methyltransf_20: Puta 84.4 2.4 5.2E-05 33.2 5.0 41 25-67 226-266 (311)
47 KOG1099|consensus 84.1 1.2 2.5E-05 34.4 3.0 37 22-61 137-173 (294)
48 PF01728 FtsJ: FtsJ-like methy 83.9 2 4.4E-05 29.4 4.0 54 20-75 111-165 (181)
49 TIGR00406 prmA ribosomal prote 83.5 3.2 6.9E-05 31.1 5.2 43 28-74 239-281 (288)
50 PRK09489 rsmC 16S ribosomal RN 83.3 1.6 3.5E-05 33.9 3.6 30 26-55 281-310 (342)
51 PRK09328 N5-glutamine S-adenos 83.2 3.8 8.1E-05 29.6 5.3 42 25-70 215-256 (275)
52 TIGR00452 methyltransferase, p 83.1 3.6 7.7E-05 31.8 5.4 24 30-53 207-230 (314)
53 PF08242 Methyltransf_12: Meth 83.1 1.1 2.4E-05 27.4 2.2 17 28-44 83-99 (99)
54 PRK05134 bifunctional 3-demeth 82.9 5.1 0.00011 28.3 5.8 21 30-50 133-153 (233)
55 TIGR01282 nifD nitrogenase mol 82.6 2.4 5.2E-05 34.2 4.4 48 27-74 119-169 (466)
56 cd01972 Nitrogenase_VnfE_like 82.5 2.3 5.1E-05 33.5 4.3 48 27-74 77-126 (426)
57 PRK00107 gidB 16S rRNA methylt 82.4 4.1 9E-05 28.9 5.2 42 28-73 125-166 (187)
58 PF13728 TraF: F plasmid trans 82.2 8 0.00017 28.2 6.7 48 39-87 120-170 (215)
59 TIGR00536 hemK_fam HemK family 82.0 5.9 0.00013 29.5 6.1 42 25-70 221-263 (284)
60 cd01967 Nitrogenase_MoFe_alpha 81.6 4 8.7E-05 31.6 5.3 49 26-74 74-124 (406)
61 cd01979 Pchlide_reductase_N Pc 81.5 2.6 5.6E-05 33.0 4.2 48 27-74 75-124 (396)
62 PRK13703 conjugal pilus assemb 81.1 9.5 0.00021 28.8 6.9 55 28-86 135-192 (248)
63 PRK00216 ubiE ubiquinone/menaq 80.1 6.6 0.00014 27.3 5.5 22 30-51 140-161 (239)
64 TIGR02469 CbiT precorrin-6Y C5 79.3 2.6 5.5E-05 26.2 2.9 20 29-48 103-122 (124)
65 TIGR02739 TraF type-F conjugat 79.2 12 0.00026 28.3 7.0 57 27-87 141-200 (256)
66 PF13489 Methyltransf_23: Meth 79.0 1.1 2.4E-05 29.2 1.2 22 29-50 96-117 (161)
67 TIGR01279 DPOR_bchN light-inde 78.6 3.4 7.4E-05 32.6 4.0 49 26-74 71-121 (407)
68 TIGR01983 UbiG ubiquinone bios 78.6 8.7 0.00019 26.8 5.8 21 30-50 131-151 (224)
69 COG2264 PrmA Ribosomal protein 78.4 7.2 0.00016 30.3 5.6 46 26-74 241-286 (300)
70 smart00828 PKS_MT Methyltransf 78.4 9.1 0.0002 26.8 5.8 46 29-74 85-142 (224)
71 PRK10258 biotin biosynthesis p 78.1 2.4 5.1E-05 30.5 2.8 20 29-48 121-140 (251)
72 TIGR01283 nifE nitrogenase mol 78.0 4.2 9.1E-05 32.4 4.4 48 27-74 109-158 (456)
73 TIGR00091 tRNA (guanine-N(7)-) 77.9 2.5 5.4E-05 29.6 2.8 20 29-48 113-132 (194)
74 TIGR01861 ANFD nitrogenase iro 77.7 6.3 0.00014 32.5 5.4 45 30-74 118-166 (513)
75 PRK08317 hypothetical protein; 77.3 5.4 0.00012 27.4 4.4 21 30-50 106-126 (241)
76 cd01976 Nitrogenase_MoFe_alpha 77.1 4.6 0.0001 32.0 4.4 48 27-74 86-136 (421)
77 TIGR00006 S-adenosyl-methyltra 77.0 6 0.00013 30.7 4.9 51 14-67 206-256 (305)
78 PF01234 NNMT_PNMT_TEMT: NNMT/ 76.6 1.7 3.6E-05 32.9 1.7 49 27-75 178-238 (256)
79 cd02440 AdoMet_MTases S-adenos 76.3 4.4 9.5E-05 23.1 3.2 19 29-47 85-103 (107)
80 COG1041 Predicted DNA modifica 76.3 2.9 6.3E-05 33.2 3.0 25 25-49 287-311 (347)
81 cd01971 Nitrogenase_VnfN_like 74.8 5.7 0.00012 31.4 4.4 47 27-74 74-122 (427)
82 TIGR01284 alt_nitrog_alph nitr 74.0 8.2 0.00018 31.0 5.1 47 29-75 114-164 (457)
83 PRK00050 16S rRNA m(4)C1402 me 73.5 8.3 0.00018 29.7 4.8 50 14-66 202-251 (296)
84 cd01968 Nitrogenase_NifE_I Nit 72.2 10 0.00022 29.8 5.1 48 27-74 74-123 (410)
85 TIGR01285 nifN nitrogenase mol 72.1 11 0.00024 30.1 5.4 48 27-74 79-132 (432)
86 PF05175 MTS: Methyltransferas 71.8 2.4 5.3E-05 29.1 1.5 25 26-50 118-142 (170)
87 PRK14478 nitrogenase molybdenu 71.8 8.3 0.00018 31.2 4.7 48 27-74 107-156 (475)
88 KOG2361|consensus 71.8 2.6 5.6E-05 32.3 1.7 21 27-47 162-182 (264)
89 TIGR03840 TMPT_Se_Te thiopurin 71.2 5.5 0.00012 28.8 3.3 24 28-51 132-155 (213)
90 cd01981 Pchlide_reductase_B Pc 71.1 8.1 0.00018 30.4 4.4 48 27-74 73-122 (430)
91 PLN02232 ubiquinone biosynthes 70.5 5.9 0.00013 27.0 3.1 22 29-50 62-83 (160)
92 PLN02233 ubiquinone biosynthes 70.4 5.4 0.00012 29.4 3.1 23 29-51 163-185 (261)
93 PF06962 rRNA_methylase: Putat 69.0 3 6.6E-05 29.0 1.4 44 30-74 74-123 (140)
94 TIGR00417 speE spermidine synt 68.8 12 0.00026 27.7 4.7 25 29-53 167-191 (270)
95 PRK02842 light-independent pro 68.4 13 0.00029 29.4 5.1 39 36-74 94-135 (427)
96 PLN02396 hexaprenyldihydroxybe 67.9 5.6 0.00012 30.8 2.8 20 29-48 216-235 (322)
97 PRK11873 arsM arsenite S-adeno 67.5 5.8 0.00013 28.9 2.7 19 30-48 165-183 (272)
98 PF14542 Acetyltransf_CG: GCN5 67.2 2.8 6E-05 25.8 0.9 25 25-53 42-66 (78)
99 PRK15052 D-tagatose-1,6-bispho 67.0 8.1 0.00017 31.5 3.6 21 41-65 12-32 (421)
100 cd01974 Nitrogenase_MoFe_beta 66.8 15 0.00032 29.2 5.0 48 27-74 73-126 (435)
101 PRK14477 bifunctional nitrogen 66.7 8.7 0.00019 33.7 4.0 47 28-74 101-149 (917)
102 COG2710 NifD Nitrogenase molyb 66.6 21 0.00045 28.8 6.0 50 26-75 97-149 (456)
103 COG2226 UbiE Methylase involve 66.5 5.1 0.00011 30.0 2.3 28 29-58 137-164 (238)
104 PLN02336 phosphoethanolamine N 66.4 8.3 0.00018 30.5 3.6 22 29-50 350-371 (475)
105 cd01977 Nitrogenase_VFe_alpha 66.3 17 0.00036 28.6 5.3 48 28-75 76-127 (415)
106 PRK11207 tellurite resistance 66.1 8.2 0.00018 27.1 3.2 22 27-48 113-134 (197)
107 PRK03612 spermidine synthase; 65.9 14 0.00029 30.3 4.8 40 30-71 397-439 (521)
108 PTZ00098 phosphoethanolamine N 65.7 7.2 0.00016 28.8 3.0 20 29-48 137-156 (263)
109 PLN02244 tocopherol O-methyltr 65.4 6.8 0.00015 30.1 2.9 21 30-50 205-225 (340)
110 COG0293 FtsJ 23S rRNA methylas 65.4 16 0.00034 26.9 4.7 52 20-74 131-184 (205)
111 KOG1270|consensus 65.4 6 0.00013 30.7 2.5 20 30-49 177-196 (282)
112 TIGR00477 tehB tellurite resis 65.1 8.3 0.00018 27.0 3.1 21 28-48 113-133 (195)
113 TIGR01862 N2-ase-Ialpha nitrog 65.0 14 0.0003 29.5 4.7 48 27-74 105-155 (443)
114 PRK11630 hypothetical protein; 64.8 9.8 0.00021 27.5 3.5 31 35-65 21-55 (206)
115 TIGR01860 VNFD nitrogenase van 64.0 19 0.00041 29.1 5.3 48 27-74 114-165 (461)
116 cd01966 Nitrogenase_NifN_1 Nit 63.8 26 0.00056 27.8 5.9 47 28-74 70-122 (417)
117 PRK10634 tRNA(ANN) t(6)A37 thr 63.8 10 0.00023 27.0 3.4 32 34-65 13-48 (190)
118 TIGR02072 BioC biotin biosynth 63.7 8.7 0.00019 26.5 2.9 20 29-48 116-135 (240)
119 PF01795 Methyltransf_5: MraW 63.5 5.1 0.00011 31.2 1.9 43 22-67 215-257 (310)
120 PRK11805 N5-glutamine S-adenos 62.8 9.7 0.00021 29.0 3.3 44 25-73 240-283 (307)
121 PRK01544 bifunctional N5-gluta 62.7 20 0.00044 29.2 5.3 41 25-69 246-286 (506)
122 PRK15451 tRNA cmo(5)U34 methyl 62.6 8.7 0.00019 27.9 2.9 21 29-49 145-165 (247)
123 PF13578 Methyltransf_24: Meth 62.3 5.5 0.00012 24.8 1.6 21 26-46 83-103 (106)
124 PF03161 LAGLIDADG_2: LAGLIDAD 62.1 4.8 0.0001 28.1 1.4 33 39-71 122-154 (178)
125 CHL00076 chlB photochlorophyll 61.7 18 0.00039 29.6 4.8 47 28-74 74-122 (513)
126 COG0009 SUA5 Putative translat 60.9 14 0.0003 27.2 3.7 33 33-65 18-54 (211)
127 PF05401 NodS: Nodulation prot 60.9 5.8 0.00013 29.3 1.7 23 27-49 125-147 (201)
128 PF01209 Ubie_methyltran: ubiE 60.7 3.5 7.5E-05 30.3 0.5 34 29-65 134-167 (233)
129 PRK13699 putative methylase; P 60.7 32 0.00068 25.1 5.5 45 25-73 49-93 (227)
130 PRK14476 nitrogenase molybdenu 60.3 25 0.00054 28.3 5.3 48 27-74 80-133 (455)
131 KOG1975|consensus 59.9 8.6 0.00019 30.9 2.6 19 29-47 218-236 (389)
132 TIGR02015 BchY chlorophyllide 59.8 8.9 0.00019 30.6 2.7 27 26-52 74-100 (422)
133 PRK14966 unknown domain/N5-glu 59.7 30 0.00064 28.2 5.7 46 24-73 357-402 (423)
134 KOG1271|consensus 59.5 9.8 0.00021 28.5 2.6 29 32-60 165-193 (227)
135 cd01965 Nitrogenase_MoFe_beta_ 59.1 35 0.00075 26.9 5.9 48 27-74 69-122 (428)
136 PF06859 Bin3: Bicoid-interact 59.1 3.9 8.5E-05 27.5 0.5 17 29-45 25-41 (110)
137 TIGR03190 benz_CoA_bzdN benzoy 58.9 9 0.0002 29.9 2.5 16 40-55 25-40 (377)
138 TIGR02752 MenG_heptapren 2-hep 58.6 11 0.00025 26.4 2.9 19 30-48 133-151 (231)
139 PRK14103 trans-aconitate 2-met 58.6 11 0.00024 27.3 2.8 18 30-47 108-125 (255)
140 PF02977 CarbpepA_inh: Carboxy 58.0 3.6 7.7E-05 23.8 0.1 19 35-53 28-46 (46)
141 PF03848 TehB: Tellurite resis 57.7 3.2 7E-05 30.1 -0.1 27 22-48 107-133 (192)
142 PF13580 SIS_2: SIS domain; PD 57.4 15 0.00032 24.5 3.1 52 14-65 8-59 (138)
143 KOG4300|consensus 57.3 11 0.00023 28.8 2.6 18 30-47 164-181 (252)
144 COG2103 Predicted sugar phosph 57.2 8.5 0.00018 30.0 2.1 21 27-47 46-66 (298)
145 PRK15458 tagatose 6-phosphate 57.1 16 0.00035 29.9 3.7 21 41-65 15-35 (426)
146 smart00138 MeTrc Methyltransfe 56.9 9.6 0.00021 28.3 2.3 21 29-49 223-243 (264)
147 PF08134 cIII: cIII protein fa 56.6 15 0.00032 20.8 2.5 26 1-26 12-39 (44)
148 PRK15068 tRNA mo(5)U34 methylt 56.5 13 0.00028 28.5 3.0 20 30-49 208-227 (322)
149 cd05007 SIS_Etherase N-acetylm 56.4 27 0.00058 26.0 4.6 33 20-52 28-60 (257)
150 TIGR02716 C20_methyl_CrtF C-20 56.2 19 0.00041 26.8 3.8 27 30-56 236-262 (306)
151 COG0436 Aspartate/tyrosine/aro 56.0 76 0.0016 24.9 7.3 59 20-80 298-360 (393)
152 PLN02490 MPBQ/MSBQ methyltrans 55.9 34 0.00073 26.8 5.3 18 30-47 197-214 (340)
153 TIGR02810 agaZ_gatZ D-tagatose 55.9 17 0.00037 29.6 3.7 21 41-65 11-31 (420)
154 TIGR00740 methyltransferase, p 55.8 12 0.00027 26.7 2.7 20 29-48 142-161 (239)
155 TIGR01278 DPOR_BchB light-inde 55.2 24 0.00051 28.8 4.5 48 26-74 72-121 (511)
156 PRK13255 thiopurine S-methyltr 53.7 15 0.00033 26.5 2.9 27 26-52 133-159 (218)
157 PLN02672 methionine S-methyltr 52.5 23 0.00051 32.0 4.3 45 24-71 254-298 (1082)
158 COG4976 Predicted methyltransf 52.5 48 0.001 25.7 5.4 48 27-74 204-263 (287)
159 PRK14477 bifunctional nitrogen 52.3 31 0.00068 30.4 5.0 48 27-74 559-612 (917)
160 PRK01581 speE spermidine synth 51.5 34 0.00073 27.5 4.7 22 30-51 250-271 (374)
161 PRK01683 trans-aconitate 2-met 51.3 39 0.00084 24.2 4.7 19 30-48 112-130 (258)
162 PF13847 Methyltransf_31: Meth 51.0 6.8 0.00015 25.9 0.6 32 30-62 92-123 (152)
163 COG4122 Predicted O-methyltran 50.8 13 0.00028 27.6 2.1 23 30-52 148-170 (219)
164 PLN03075 nicotianamine synthas 50.8 15 0.00033 28.4 2.6 19 30-48 215-233 (296)
165 PF08013 Tagatose_6_P_K: Tagat 50.5 30 0.00065 28.3 4.3 21 41-65 15-35 (424)
166 PRK12335 tellurite resistance 50.1 18 0.0004 26.8 2.9 20 27-46 202-221 (287)
167 PRK11524 putative methyltransf 49.9 30 0.00065 25.8 4.0 27 24-51 56-82 (284)
168 KOG3349|consensus 49.9 8.2 0.00018 27.8 0.9 15 39-53 124-138 (170)
169 PRK11705 cyclopropane fatty ac 49.6 22 0.00047 28.0 3.3 22 29-50 248-269 (383)
170 PF03291 Pox_MCEL: mRNA cappin 48.6 9.4 0.0002 29.7 1.1 22 28-49 166-187 (331)
171 PRK12606 GTP cyclohydrolase I; 48.4 30 0.00066 25.4 3.7 35 16-50 125-159 (201)
172 KOG1663|consensus 48.3 13 0.00029 28.1 1.9 17 32-48 167-183 (237)
173 KOG2899|consensus 48.3 17 0.00037 28.2 2.4 32 30-61 191-222 (288)
174 PRK14121 tRNA (guanine-N(7)-)- 47.9 19 0.00042 28.9 2.8 27 28-54 215-241 (390)
175 PRK09347 folE GTP cyclohydrola 47.8 34 0.00073 24.8 3.9 34 17-50 114-147 (188)
176 TIGR03538 DapC_gpp succinyldia 47.1 1.1E+02 0.0024 23.2 6.8 52 20-74 302-354 (393)
177 cd01980 Chlide_reductase_Y Chl 46.6 20 0.00043 28.3 2.7 47 26-74 78-125 (416)
178 cd02969 PRX_like1 Peroxiredoxi 46.5 25 0.00054 23.7 2.9 38 37-74 115-162 (171)
179 cd03466 Nitrogenase_NifN_2 Nit 46.1 18 0.00039 28.7 2.4 48 27-74 72-124 (429)
180 PLN03044 GTP cyclohydrolase I; 45.7 38 0.00082 24.6 3.9 35 16-50 111-145 (188)
181 PRK12570 N-acetylmuramic acid- 45.2 49 0.0011 25.2 4.6 30 22-51 39-68 (296)
182 cd01479 Sec24-like Sec24-like: 44.8 17 0.00037 26.7 2.0 24 28-51 118-142 (244)
183 PRK00811 spermidine synthase; 44.8 68 0.0015 24.0 5.3 22 30-51 173-194 (283)
184 cd00316 Oxidoreductase_nitroge 44.3 51 0.0011 25.1 4.6 40 35-74 76-117 (399)
185 cd00642 GTP_cyclohydro1 GTP cy 44.2 38 0.00083 24.5 3.7 35 16-50 110-144 (185)
186 COG4573 GatZ Predicted tagatos 43.8 37 0.0008 27.6 3.8 23 39-65 12-35 (426)
187 TIGR00063 folE GTP cyclohydrol 43.7 39 0.00085 24.3 3.6 35 16-50 105-139 (180)
188 PF01206 TusA: Sulfurtransfera 43.3 35 0.00077 19.8 2.9 33 38-74 24-57 (70)
189 COG2813 RsmC 16S RNA G1207 met 43.0 67 0.0014 25.1 5.1 50 29-89 247-298 (300)
190 PRK02910 light-independent pro 42.8 24 0.00053 28.8 2.7 28 26-53 72-99 (519)
191 PRK10611 chemotaxis methyltran 42.7 27 0.00059 26.7 2.9 19 30-48 244-262 (287)
192 PLN02781 Probable caffeoyl-CoA 42.6 36 0.00077 24.8 3.4 21 29-49 159-179 (234)
193 TIGR00057 Sua5/YciO/YrdC/YwlC 42.5 18 0.00038 25.9 1.7 31 34-64 14-48 (201)
194 PF07942 N2227: N2227-like pro 42.1 59 0.0013 24.8 4.6 44 31-74 185-240 (270)
195 PLN02397 aspartate transaminas 41.9 1.2E+02 0.0027 23.6 6.5 48 19-72 340-393 (423)
196 COG0220 Predicted S-adenosylme 41.9 23 0.0005 26.2 2.3 18 32-49 148-165 (227)
197 PF08854 DUF1824: Domain of un 41.9 54 0.0012 22.4 3.9 69 18-89 15-85 (125)
198 PF10666 Phage_Gp14: Phage pro 41.6 44 0.00096 23.3 3.5 27 8-34 59-85 (140)
199 PF01269 Fibrillarin: Fibrilla 41.6 40 0.00087 25.4 3.5 49 22-73 155-209 (229)
200 PRK00961 H(2)-dependent methyl 41.4 39 0.00085 26.7 3.5 35 22-65 154-188 (342)
201 PLN02476 O-methyltransferase 41.0 25 0.00055 26.8 2.4 21 29-49 209-229 (278)
202 PF01739 CheR: CheR methyltran 40.9 16 0.00035 26.2 1.3 21 29-49 156-176 (196)
203 PRK07324 transaminase; Validat 40.8 1.6E+02 0.0035 22.4 6.9 59 24-84 285-346 (373)
204 PF05430 Methyltransf_30: S-ad 40.4 31 0.00067 23.1 2.6 37 32-75 74-110 (124)
205 PF13709 DUF4159: Domain of un 39.9 59 0.0013 23.5 4.1 40 35-75 76-118 (207)
206 TIGR00080 pimt protein-L-isoas 39.6 21 0.00046 25.2 1.8 16 33-48 162-177 (215)
207 COG0500 SmtA SAM-dependent met 39.4 59 0.0013 18.6 3.4 28 29-56 136-163 (257)
208 COG2519 GCD14 tRNA(1-methylade 39.4 26 0.00057 26.8 2.3 22 29-50 176-198 (256)
209 PF13649 Methyltransf_25: Meth 39.0 6.2 0.00013 24.3 -1.0 17 26-42 85-101 (101)
210 PLN02336 phosphoethanolamine N 38.6 41 0.0009 26.5 3.4 26 27-52 121-146 (475)
211 PF02353 CMAS: Mycolic acid cy 38.4 22 0.00047 26.8 1.7 23 30-52 148-170 (273)
212 COG0677 WecC UDP-N-acetyl-D-ma 38.1 72 0.0016 26.3 4.7 45 26-71 106-151 (436)
213 PTZ00484 GTP cyclohydrolase I; 38.1 61 0.0013 24.8 4.1 33 18-50 186-218 (259)
214 PRK05441 murQ N-acetylmuramic 37.2 72 0.0016 24.3 4.4 32 20-51 41-72 (299)
215 cd01973 Nitrogenase_VFe_beta_l 37.2 31 0.00068 27.8 2.5 36 28-63 75-113 (454)
216 PRK15001 SAM-dependent 23S rib 37.0 45 0.00097 26.5 3.4 26 28-53 320-345 (378)
217 TIGR01723 hmd_TIGR 5,10-methen 36.9 29 0.00063 27.5 2.2 35 22-65 152-186 (340)
218 TIGR01286 nifK nitrogenase mol 36.5 32 0.00069 28.4 2.5 27 27-53 130-156 (515)
219 PRK04457 spermidine synthase; 36.2 44 0.00095 24.8 3.0 38 29-67 158-195 (262)
220 PF10237 N6-adenineMlase: Prob 36.0 93 0.002 21.8 4.5 25 36-64 111-135 (162)
221 COG3910 Predicted ATPase [Gene 36.0 63 0.0014 24.4 3.8 28 21-52 162-189 (233)
222 PF03269 DUF268: Caenorhabditi 36.0 36 0.00079 24.7 2.5 13 36-48 99-111 (177)
223 PF08704 GCD14: tRNA methyltra 35.9 12 0.00025 28.1 -0.1 20 30-49 127-148 (247)
224 TIGR02263 benz_CoA_red_C benzo 35.8 70 0.0015 25.1 4.2 17 39-55 27-43 (380)
225 PF01555 N6_N4_Mtase: DNA meth 35.7 24 0.00052 24.0 1.5 45 27-73 35-80 (231)
226 PTZ00146 fibrillarin; Provisio 35.7 1E+02 0.0022 23.9 5.0 16 32-47 221-236 (293)
227 TIGR01692 HIBADH 3-hydroxyisob 35.6 74 0.0016 23.5 4.2 39 36-76 78-116 (288)
228 COG1352 CheR Methylase of chem 35.5 55 0.0012 24.9 3.5 24 20-47 217-240 (268)
229 PRK06274 indolepyruvate oxidor 35.5 1.5E+02 0.0033 20.5 5.6 18 36-53 84-101 (197)
230 TIGR00274 N-acetylmuramic acid 35.4 96 0.0021 23.6 4.8 28 23-50 39-66 (291)
231 KOG2698|consensus 35.2 99 0.0022 23.4 4.7 28 20-47 175-202 (247)
232 PF14332 DUF4388: Domain of un 35.1 35 0.00076 21.0 2.1 25 41-65 40-64 (103)
233 PRK11088 rrmA 23S rRNA methylt 35.0 34 0.00074 25.1 2.3 16 33-48 166-181 (272)
234 PRK00312 pcm protein-L-isoaspa 34.9 35 0.00076 23.8 2.3 16 34-49 161-176 (212)
235 KOG3347|consensus 34.8 34 0.00073 24.8 2.1 25 31-55 66-91 (176)
236 PF03721 UDPG_MGDP_dh_N: UDP-g 33.8 61 0.0013 22.8 3.3 40 27-67 99-138 (185)
237 TIGR02932 vnfK_nitrog V-contai 33.2 40 0.00086 27.3 2.5 36 28-63 78-116 (457)
238 PRK13944 protein-L-isoaspartat 32.6 35 0.00077 24.0 2.0 15 34-48 159-173 (205)
239 PRK06922 hypothetical protein; 32.3 47 0.001 28.7 2.9 22 27-48 516-537 (677)
240 PTZ00433 tyrosine aminotransfe 32.3 2.3E+02 0.0051 21.7 6.9 62 22-84 316-384 (412)
241 TIGR02175 PorC_KorC 2-oxoacid: 32.2 39 0.00084 23.4 2.1 18 35-53 84-101 (177)
242 KOG1709|consensus 32.1 51 0.0011 25.3 2.8 19 30-48 188-206 (271)
243 TIGR03438 probable methyltrans 32.0 55 0.0012 24.6 3.0 24 30-53 159-182 (301)
244 PRK08441 oorC 2-oxoglutarate-a 31.9 62 0.0014 22.6 3.1 20 34-53 83-102 (183)
245 KOG3178|consensus 31.7 47 0.001 26.4 2.6 21 29-49 256-276 (342)
246 PF01564 Spermine_synth: Sperm 31.6 54 0.0012 24.1 2.9 33 30-64 173-205 (246)
247 PLN02589 caffeoyl-CoA O-methyl 31.4 37 0.00081 25.3 2.0 19 30-48 172-190 (247)
248 COG4007 Predicted dehydrogenas 31.4 72 0.0016 25.2 3.6 35 25-64 98-132 (340)
249 PF04194 PDCD2_C: Programmed c 31.2 22 0.00047 24.8 0.7 9 41-50 134-142 (164)
250 PF04320 DUF469: Protein with 31.2 8 0.00017 25.6 -1.4 41 47-88 19-60 (101)
251 PRK09599 6-phosphogluconate de 30.7 1.6E+02 0.0035 21.9 5.3 43 33-77 79-121 (301)
252 KOG1331|consensus 29.9 94 0.002 24.3 4.0 38 8-47 105-143 (293)
253 PF08351 DUF1726: Domain of un 29.9 66 0.0014 20.4 2.7 26 29-54 26-51 (92)
254 cd03067 PDI_b_PDIR_N PDIb fami 29.4 1.6E+02 0.0034 19.9 4.5 36 21-62 34-69 (112)
255 PF06897 DUF1269: Protein of u 29.4 1.6E+02 0.0036 19.1 5.8 41 32-75 46-86 (102)
256 PLN02531 GTP cyclohydrolase I 29.3 80 0.0017 26.2 3.7 33 17-49 152-184 (469)
257 TIGR01689 EcbF-BcbF capsule bi 29.2 1.8E+02 0.0039 19.5 5.7 46 39-84 38-96 (126)
258 TIGR03282 methan_mark_13 putat 28.9 65 0.0014 25.8 3.0 47 27-75 63-111 (352)
259 PF06325 PrmA: Ribosomal prote 28.6 29 0.00064 26.6 1.1 47 24-74 235-281 (295)
260 PRK08534 pyruvate ferredoxin o 28.5 50 0.0011 22.9 2.1 19 35-54 84-102 (181)
261 PF03141 Methyltransf_29: Puta 28.3 53 0.0012 27.5 2.5 18 35-52 206-223 (506)
262 PF06306 CgtA: Beta-1,4-N-acet 27.9 92 0.002 24.9 3.7 25 40-67 114-138 (347)
263 TIGR03026 NDP-sugDHase nucleot 27.8 1.7E+02 0.0037 22.8 5.2 38 28-66 100-137 (411)
264 PF00799 Gemini_AL1: Geminivir 27.6 29 0.00062 23.3 0.7 24 43-66 9-32 (114)
265 PLN02366 spermidine synthase 27.4 55 0.0012 25.2 2.3 17 30-46 188-204 (308)
266 PF06080 DUF938: Protein of un 27.4 76 0.0016 23.3 3.0 23 28-50 121-144 (204)
267 TIGR00365 monothiol glutaredox 27.3 93 0.002 19.5 3.1 33 37-74 8-49 (97)
268 PRK00536 speE spermidine synth 27.1 1.2E+02 0.0025 23.0 4.0 22 32-53 155-176 (262)
269 PRK09147 succinyldiaminopimela 27.0 2.8E+02 0.0061 21.0 7.1 48 24-74 307-355 (396)
270 PF11899 DUF3419: Protein of u 26.8 74 0.0016 25.3 3.0 21 34-54 320-340 (380)
271 PF05711 TylF: Macrocin-O-meth 26.8 31 0.00068 25.9 0.9 39 29-69 193-231 (248)
272 PLN02823 spermine synthase 26.6 1.4E+02 0.003 23.3 4.5 16 33-48 205-220 (336)
273 PRK12490 6-phosphogluconate de 26.5 2.6E+02 0.0057 20.7 5.8 45 30-76 76-120 (299)
274 PRK00299 sulfur transfer prote 26.4 1.6E+02 0.0035 18.0 4.5 35 36-74 31-66 (81)
275 PF08532 Glyco_hydro_42M: Beta 26.2 43 0.00092 23.7 1.5 29 42-70 179-207 (207)
276 PRK06853 indolepyruvate oxidor 25.7 2.4E+02 0.0051 19.7 5.5 19 35-53 84-102 (197)
277 PF01227 GTP_cyclohydroI: GTP 25.5 59 0.0013 23.4 2.1 29 21-49 110-138 (179)
278 PTZ00142 6-phosphogluconate de 25.5 1.8E+02 0.0039 23.7 5.1 52 26-79 79-130 (470)
279 PLN02531 GTP cyclohydrolase I 25.3 1.2E+02 0.0025 25.2 4.0 34 16-50 389-422 (469)
280 cd03420 SirA_RHOD_Pry_redox Si 25.3 1.5E+02 0.0033 17.3 4.6 36 36-75 21-57 (69)
281 PF07137 VDE: Violaxanthin de- 25.3 79 0.0017 23.4 2.7 30 41-70 148-177 (198)
282 PRK13942 protein-L-isoaspartat 25.2 46 0.00099 23.7 1.5 13 35-47 163-175 (212)
283 cd06906 M14_Nna1 Peptidase M14 25.1 1.2E+02 0.0026 23.4 3.8 34 41-74 51-100 (278)
284 PRK05764 aspartate aminotransf 25.1 3E+02 0.0065 20.7 7.8 51 23-73 300-357 (393)
285 TIGR00872 gnd_rel 6-phosphoglu 25.1 2.9E+02 0.0063 20.5 6.0 48 28-77 73-120 (298)
286 PF07905 PucR: Purine cataboli 24.5 1.3E+02 0.0028 19.5 3.5 26 40-65 41-66 (123)
287 cd03423 SirA SirA (also known 24.4 1.6E+02 0.0034 17.2 4.7 34 37-74 22-56 (69)
288 TIGR02931 anfK_nitrog Fe-only 24.4 70 0.0015 25.8 2.5 38 27-64 80-120 (461)
289 PRK15182 Vi polysaccharide bio 24.3 1.9E+02 0.004 23.2 4.9 37 29-66 101-137 (425)
290 PF02390 Methyltransf_4: Putat 24.2 29 0.00062 24.7 0.3 18 32-49 117-134 (195)
291 PRK13937 phosphoheptose isomer 23.8 2.2E+02 0.0047 19.8 4.7 36 18-53 15-50 (188)
292 TIGR01264 tyr_amTase_E tyrosin 23.8 3.3E+02 0.0072 20.7 7.4 61 23-84 308-375 (401)
293 cd03143 A4_beta-galactosidase_ 23.8 88 0.0019 20.7 2.6 22 37-58 76-97 (154)
294 COG1832 Predicted CoA-binding 23.8 1.9E+02 0.0042 20.2 4.3 37 40-76 15-51 (140)
295 PF01596 Methyltransf_3: O-met 23.7 31 0.00067 24.9 0.4 21 30-50 137-157 (205)
296 COG2388 Predicted acetyltransf 23.4 52 0.0011 21.5 1.4 27 22-52 56-82 (99)
297 COG4627 Uncharacterized protei 23.2 1E+02 0.0022 22.6 2.9 25 27-51 65-89 (185)
298 cd01842 SGNH_hydrolase_like_5 23.1 1.3E+02 0.0029 21.9 3.6 46 30-75 81-149 (183)
299 PRK10645 divalent-cation toler 23.1 1.7E+02 0.0036 19.4 3.8 46 40-88 9-54 (112)
300 KOG0681|consensus 22.6 1.3E+02 0.0028 26.0 3.7 61 23-87 93-159 (645)
301 PRK00588 rnpA ribonuclease P; 22.6 2.3E+02 0.0049 18.7 4.4 41 26-66 65-109 (118)
302 PRK04820 rnpA ribonuclease P; 22.5 2.3E+02 0.005 19.6 4.5 42 26-67 71-115 (145)
303 PF00583 Acetyltransf_1: Acety 22.4 1.6E+02 0.0034 16.5 3.8 40 23-69 43-82 (83)
304 PRK08361 aspartate aminotransf 22.4 3.5E+02 0.0076 20.5 6.5 51 23-73 301-354 (391)
305 COG1889 NOP1 Fibrillarin-like 22.2 2.9E+02 0.0062 20.9 5.2 51 20-73 155-211 (231)
306 PF14394 DUF4423: Domain of un 22.1 1.9E+02 0.0041 20.2 4.2 46 18-63 96-141 (171)
307 PRK02240 GTP cyclohydrolase II 22.1 1.4E+02 0.0031 22.8 3.7 59 8-69 16-82 (254)
308 PRK08537 2-oxoglutarate ferred 22.1 1.3E+02 0.0029 20.6 3.3 19 35-53 83-101 (177)
309 PF00891 Methyltransf_2: O-met 22.0 51 0.0011 23.4 1.2 29 31-59 180-210 (241)
310 COG4821 Uncharacterized protei 21.9 1.9E+02 0.0041 22.0 4.2 40 11-50 8-47 (243)
311 TIGR00143 hypF [NiFe] hydrogen 21.9 1.4E+02 0.003 25.8 3.9 36 30-65 164-203 (711)
312 PF00107 ADH_zinc_N: Zinc-bind 21.8 35 0.00076 21.4 0.3 22 30-51 71-92 (130)
313 PRK13256 thiopurine S-methyltr 21.8 3.3E+02 0.0071 20.1 5.5 24 29-52 144-167 (226)
314 PF01558 POR: Pyruvate ferredo 21.8 75 0.0016 21.5 2.0 21 33-53 71-91 (173)
315 PLN02595 cytochrome c oxidase 21.8 73 0.0016 21.2 1.8 16 75-90 85-100 (102)
316 KOG1107|consensus 21.7 83 0.0018 27.6 2.5 22 30-52 619-642 (760)
317 PRK13238 tnaA tryptophanase/L- 21.3 4E+02 0.0087 21.4 6.3 53 23-75 324-385 (460)
318 PRK06824 translation initiatio 21.2 57 0.0012 22.1 1.2 12 39-50 4-15 (118)
319 PRK12937 short chain dehydroge 21.1 2.1E+02 0.0046 19.5 4.2 22 31-52 122-143 (245)
320 COG5459 Predicted rRNA methyla 21.0 92 0.002 25.7 2.6 18 30-47 207-224 (484)
321 PF05148 Methyltransf_8: Hypot 20.8 36 0.00079 25.5 0.2 42 31-74 141-183 (219)
322 PRK09287 6-phosphogluconate de 20.5 2.6E+02 0.0057 22.7 5.1 49 29-79 70-118 (459)
323 COG0302 FolE GTP cyclohydrolas 20.4 2.9E+02 0.0063 20.4 4.9 32 16-47 119-150 (195)
324 PHA02888 hypothetical protein; 20.3 2.5E+02 0.0055 18.1 4.2 31 41-71 17-56 (96)
325 PF12898 Stc1: Stc1 domain; I 20.1 98 0.0021 19.3 2.1 34 16-50 11-44 (84)
326 PF00148 Oxidored_nitro: Nitro 20.1 69 0.0015 24.6 1.7 46 29-74 64-111 (398)
327 cd03465 URO-D_like The URO-D _ 20.1 2.6E+02 0.0055 20.7 4.7 25 41-65 302-326 (330)
328 TIGR00505 ribA GTP cyclohydrol 20.0 94 0.002 22.1 2.2 21 27-50 68-89 (191)
No 1
>KOG1122|consensus
Probab=99.79 E-value=2.9e-19 Score=141.82 Aligned_cols=68 Identities=56% Similarity=0.835 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC-CcEEeecCCCCCCCC
Q psy7378 11 LALRALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR-DVKLVPTGLDFGTEG 82 (90)
Q Consensus 11 ~~~~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~-~~~l~~~~~~~g~dG 82 (90)
+...++.+++.+|++||.+|++ +|++||+|||||||+.++|||.||+++|+++ +++++|.++.+|.+|
T Consensus 338 k~~~di~~~~~LQr~LllsAi~----lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~~~iG~~G 406 (460)
T KOG1122|consen 338 KTVKDILRYAHLQRELLLSAID----LVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTGLDIGGEG 406 (460)
T ss_pred hhHHHHHHhHHHHHHHHHHHHh----hccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEeccccccCCCCC
Confidence 4578899999999999988775 4699999999999999999999999999999 899999999999999
No 2
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=9.8e-19 Score=135.19 Aligned_cols=59 Identities=37% Similarity=0.587 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC-CcEEeec
Q psy7378 12 ALRALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR-DVKLVPT 74 (90)
Q Consensus 12 ~~~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~-~~~l~~~ 74 (90)
+.+++.+++.+|++||.+|+ ++|||||.|||||||++|+|||+||++||+++ ++++++.
T Consensus 256 ~~~~i~~l~~lQ~~iL~~a~----~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~ 315 (355)
T COG0144 256 TPEDIAELAKLQKEILAAAL----KLLKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEPV 315 (355)
T ss_pred CHHHHHHHHHHHHHHHHHHH----HhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceeecc
Confidence 44799999999999887765 55699999999999999999999999999988 7777664
No 3
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.72 E-value=1.5e-17 Score=133.02 Aligned_cols=57 Identities=33% Similarity=0.394 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC-C-cEEe
Q psy7378 12 ALRALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR-D-VKLV 72 (90)
Q Consensus 12 ~~~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~-~-~~l~ 72 (90)
+.+++..++.+|++||.+|+ ++|||||+|||||||++++|||+||++||+++ + ++++
T Consensus 210 s~~~v~~l~~lQ~~iL~~A~----~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~~~~~~~ 268 (470)
T PRK11933 210 SPESNLEIAATQRELIESAF----HALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAVEFE 268 (470)
T ss_pred CHHHHHHHHHHHHHHHHHHH----HHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCcEEec
Confidence 44889999999999887765 55699999999999999999999999999988 5 4444
No 4
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.70 E-value=5.3e-18 Score=127.54 Aligned_cols=59 Identities=37% Similarity=0.558 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCEEEEEcCCCCcccCHHHHHHHHhcC-CcEEeecC
Q psy7378 13 LRALSTIGKTSLIVILEAIDCLNARS----PTGGYLVYSTCSILPEENEAVVNYALRKR-DVKLVPTG 75 (90)
Q Consensus 13 ~~~l~~l~~~Q~~Ll~~al~~~~~~l----kpgG~lvYsTCS~~~eENE~vV~~~l~~~-~~~l~~~~ 75 (90)
.+++..++.+|++||++|+ +++ ||||+|||||||++++|||+||++||+++ ++++++++
T Consensus 184 ~~~~~~l~~~Q~~iL~~a~----~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~~~~ 247 (283)
T PF01189_consen 184 PEDIEKLAELQREILDNAA----KLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELVPIP 247 (283)
T ss_dssp TTHHHHHHHHHHHHHHHHH----HCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEECCE
T ss_pred ccccchHHHHHHHHHHHHH----HhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEEecc
Confidence 4788999999999876654 667 99999999999999999999999999988 78887753
No 5
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.66 E-value=2.8e-16 Score=116.50 Aligned_cols=57 Identities=46% Similarity=0.592 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC-CcEEe
Q psy7378 12 ALRALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR-DVKLV 72 (90)
Q Consensus 12 ~~~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~-~~~l~ 72 (90)
+.+++..++.+|++||.+|+ ++|||||+|||||||++++|||+||++|++++ ++.+.
T Consensus 167 ~~~~~~~l~~~q~~iL~~a~----~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~ 224 (264)
T TIGR00446 167 SEEDIQEISALQKELIDSAF----DALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEE 224 (264)
T ss_pred CHHHHHHHHHHHHHHHHHHH----HhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcEEe
Confidence 45788999999999877665 55699999999999999999999999999987 55543
No 6
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.64 E-value=5.2e-16 Score=121.95 Aligned_cols=71 Identities=27% Similarity=0.401 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC-CcEEeecC----CC-CCCCCccc
Q psy7378 12 ALRALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR-DVKLVPTG----LD-FGTEGFVN 85 (90)
Q Consensus 12 ~~~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~-~~~l~~~~----~~-~g~dGf~~ 85 (90)
+.+++..++.+|.+||.+|. ++|||||+|||||||++|+|||++|.+|++++ ++++.+.+ |. .++||||.
T Consensus 352 ~~~~~~~l~~~Q~~iL~~a~----~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~ 427 (434)
T PRK14901 352 TPEKIQELAPLQAELLESLA----PLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFM 427 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHH----HhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEE
Confidence 45788899999999877665 55699999999999999999999999999998 78876532 22 37899997
Q ss_pred c
Q psy7378 86 Y 86 (90)
Q Consensus 86 ~ 86 (90)
.
T Consensus 428 a 428 (434)
T PRK14901 428 A 428 (434)
T ss_pred E
Confidence 5
No 7
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.63 E-value=1.1e-15 Score=119.66 Aligned_cols=71 Identities=28% Similarity=0.388 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC-CcEEeec-------------CC-
Q psy7378 12 ALRALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR-DVKLVPT-------------GL- 76 (90)
Q Consensus 12 ~~~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~-~~~l~~~-------------~~- 76 (90)
+.+++.+++.+|++||.+|. ++|||||+|||||||++++|||++|++|++++ +++++.. -|
T Consensus 336 ~~~~~~~l~~lQ~~lL~~a~----~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ 411 (426)
T TIGR00563 336 KPRDIAELAELQSEILDAIW----PLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDFPFEKTGTPEQVRDGGLQILPH 411 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHH----HhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCeeccCCCccccCCCcEEECCC
Confidence 45788999999999887764 56799999999999999999999999999988 6765432 12
Q ss_pred CCCCCCcccc
Q psy7378 77 DFGTEGFVNY 86 (90)
Q Consensus 77 ~~g~dGf~~~ 86 (90)
..++||||..
T Consensus 412 ~~~~dGff~a 421 (426)
T TIGR00563 412 AEEGDGFFYA 421 (426)
T ss_pred CCCCCCeEEE
Confidence 2368999864
No 8
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.62 E-value=1.5e-15 Score=119.87 Aligned_cols=59 Identities=25% Similarity=0.444 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC-CcEEeec
Q psy7378 12 ALRALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR-DVKLVPT 74 (90)
Q Consensus 12 ~~~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~-~~~l~~~ 74 (90)
+.+++.+++.+|++||.++. ++|||||.|||||||+.++|||++|++||+++ ++++.++
T Consensus 334 ~~~~~~~l~~~Q~~iL~~a~----~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~~ 393 (431)
T PRK14903 334 NKEDFKKLSEIQLRIVSQAW----KLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVIDI 393 (431)
T ss_pred CHHHHHHHHHHHHHHHHHHH----HhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEEecc
Confidence 45688899999999877665 55799999999999999999999999999987 6776553
No 9
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.55 E-value=1.9e-14 Score=113.47 Aligned_cols=57 Identities=30% Similarity=0.405 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC-CcEEe
Q psy7378 12 ALRALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR-DVKLV 72 (90)
Q Consensus 12 ~~~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~-~~~l~ 72 (90)
+.+++..+..+|.++|.++. ++|||||+|||||||++++|||+||++||+++ ++++.
T Consensus 345 ~~~~~~~l~~~q~~iL~~a~----~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~ 402 (445)
T PRK14904 345 TPEKLAELVGLQAELLDHAA----SLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAE 402 (445)
T ss_pred CHHHHHHHHHHHHHHHHHHH----HhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEe
Confidence 45778888999998876655 55699999999999999999999999999988 67654
No 10
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.52 E-value=5.3e-14 Score=110.42 Aligned_cols=71 Identities=30% Similarity=0.463 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC-CcEEeecC----------C-CCC
Q psy7378 12 ALRALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR-DVKLVPTG----------L-DFG 79 (90)
Q Consensus 12 ~~~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~-~~~l~~~~----------~-~~g 79 (90)
+.+++.++..+|.++|.++. ++|||||.+||||||++++|||++|..+++++ ++++++.. | ..+
T Consensus 340 ~~~~l~~l~~~q~~iL~~a~----~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~P~~~~ 415 (427)
T PRK10901 340 RPEDIAALAALQSEILDALW----PLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAELLDTGTPQQPGRQLLPGEED 415 (427)
T ss_pred CHHHHHHHHHHHHHHHHHHH----HhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEecCCCCCCCceEECCCCCC
Confidence 45678888999998876655 56799999999999999999999999999988 78876521 2 236
Q ss_pred CCCcccc
Q psy7378 80 TEGFVNY 86 (90)
Q Consensus 80 ~dGf~~~ 86 (90)
+||||..
T Consensus 416 ~dGff~a 422 (427)
T PRK10901 416 GDGFFYA 422 (427)
T ss_pred CCCeEEE
Confidence 8999864
No 11
>KOG2198|consensus
Probab=99.48 E-value=3.9e-14 Score=111.00 Aligned_cols=56 Identities=41% Similarity=0.521 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC--CcEEeec
Q psy7378 15 ALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR--DVKLVPT 74 (90)
Q Consensus 15 ~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~--~~~l~~~ 74 (90)
+-..|+.+|.+||.++|+. ||+||+|||||||+.|.|||.||+.+|++. .+++++.
T Consensus 267 ~~~~L~~LQ~~iL~rgl~l----Lk~GG~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~ 324 (375)
T KOG2198|consen 267 RALGLHALQLRILRRGLRL----LKVGGRLVYSTCSLNPIENEAVVQEALQKVGGAVELVDV 324 (375)
T ss_pred hccCChHHHHHHHHHHHHH----hcCCCEEEEeccCCCchhhHHHHHHHHHHhcCcccceee
Confidence 3357899999999988865 599999999999999999999999999877 3777665
No 12
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=1.9e-13 Score=107.55 Aligned_cols=59 Identities=32% Similarity=0.523 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC-CcEEeec
Q psy7378 12 ALRALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR-DVKLVPT 74 (90)
Q Consensus 12 ~~~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~-~~~l~~~ 74 (90)
+.+++..+..+|.++|.++. ++|||||.|||||||++++|||.+|.++++++ +++++++
T Consensus 347 ~~~~~~~l~~~q~~iL~~a~----~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~ 406 (444)
T PRK14902 347 TKEDIESLQEIQLEILESVA----QYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPL 406 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHH----HHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEecc
Confidence 44678889999999877665 55699999999999999999999999999987 5777664
No 13
>KOG2360|consensus
Probab=98.81 E-value=3.6e-09 Score=83.88 Aligned_cols=61 Identities=31% Similarity=0.428 Sum_probs=50.0
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC--CcEEee
Q psy7378 8 DSTLALRALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR--DVKLVP 73 (90)
Q Consensus 8 ~~~~~~~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~--~~~l~~ 73 (90)
|.+...++|+.|+..|..++.+|+. .+-+| .+||||||++.+|||++|+++|.+. .+++.+
T Consensus 309 ~e~~~~~rL~~L~~fq~~~~~hal~--fp~~k---~vvystcs~~reene~vv~d~l~~~p~~~~l~~ 371 (413)
T KOG2360|consen 309 AETESPERLENLQSFQIRILKHALT--FPNLK---RLVYSTCSLHREENEQVVQEVLQQNPDAKRLAP 371 (413)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhc--CCchh---heeeecchhhhhhhhHHHHHHHhhChhHhhhch
Confidence 4557789999999999999999987 34444 9999999999999999999999765 244444
No 14
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=95.66 E-value=0.042 Score=37.91 Aligned_cols=46 Identities=22% Similarity=0.140 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeec
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
++...++.+.++|||||.+++.+++.. +...+..++++.+++...+
T Consensus 118 ~~~~~l~~~~~~Lk~gG~~~~~~~~~~---~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 118 VIDRFLDELPEILKEGGRVQLIQSSLN---GEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred HHHHHHHhHHHhhCCCCEEEEEEeccC---ChHHHHHHHHhCCCeEEEE
Confidence 445566777788899999999987765 3566677777777766554
No 15
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=95.35 E-value=0.054 Score=42.91 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=31.6
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCC--CCcccCHHHHHHHHhcC--CcEEee
Q psy7378 28 LEAIDCLNARSPTGGYLVYSTCS--ILPEENEAVVNYALRKR--DVKLVP 73 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lvYsTCS--~~~eENE~vV~~~l~~~--~~~l~~ 73 (90)
..++..+.++|+|||.+++++|| +..++=.+.|....... .++++.
T Consensus 319 ~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 319 KDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred HHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 34455667888999999999999 55555566666665544 455544
No 16
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.26 E-value=0.034 Score=39.21 Aligned_cols=39 Identities=21% Similarity=0.115 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCc
Q psy7378 28 LEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDV 69 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~ 69 (90)
.++++.+.+.|||||++|+.+|++ |+...+...++++++
T Consensus 125 ~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 125 KEIISASWEIIKKGGRIVIDAILL---ETVNNALSALENIGF 163 (198)
T ss_pred HHHHHHHHHHcCCCcEEEEEeecH---HHHHHHHHHHHHcCC
Confidence 346677778889999999988865 445566666766654
No 17
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=94.26 E-value=0.02 Score=35.83 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=15.4
Q ss_pred HHHHHhhcCCCCCEEEEEcC
Q psy7378 30 AIDCLNARSPTGGYLVYSTC 49 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTC 49 (90)
+++.+.+.|+|||++|..+|
T Consensus 93 ~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 93 VLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp HHHHHHHHEEEEEEEEEEE-
T ss_pred HHHHHHHhcCCCcEEEEEEC
Confidence 45556677899999999998
No 18
>PRK14968 putative methyltransferase; Provisional
Probab=93.88 E-value=0.21 Score=33.78 Aligned_cols=46 Identities=22% Similarity=0.133 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeec
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
.+..+++.+.++|||||.+++..+++... +.+..++.+.++++...
T Consensus 126 ~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~---~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 126 VIDRFLDEVGRYLKPGGRILLLQSSLTGE---DEVLEYLEKLGFEAEVV 171 (188)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEEcccCCH---HHHHHHHHHCCCeeeee
Confidence 34556777778889999999988877542 34556676677766554
No 19
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=93.33 E-value=0.19 Score=36.67 Aligned_cols=44 Identities=25% Similarity=0.214 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCc-EEeec
Q psy7378 28 LEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDV-KLVPT 74 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~-~l~~~ 74 (90)
..+|+.+|..|||||+||--. -..||+...-..++++++ ++..+
T Consensus 115 ~~ile~~~~~l~~ggrlV~na---itlE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 115 EEILEAAWERLKPGGRLVANA---ITLETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred HHHHHHHHHHcCcCCeEEEEe---ecHHHHHHHHHHHHHcCCceEEEE
Confidence 456777888899999999833 345788888888888877 66655
No 20
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=92.81 E-value=0.63 Score=33.40 Aligned_cols=62 Identities=16% Similarity=0.114 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC--CcEEeecCC--CCCCCCccccCCC
Q psy7378 25 IVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR--DVKLVPTGL--DFGTEGFVNYRQN 89 (90)
Q Consensus 25 ~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~--~~~l~~~~~--~~g~dGf~~~~~~ 89 (90)
.++..+|+.+.++|||||.++..+ ...+....+-..+.++ .+++..... ....+.|+...|.
T Consensus 142 ~~~~~~L~~~~~~LkpGG~~vi~~---~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~~~ 207 (209)
T PRK11188 142 YLVELALDMCRDVLAPGGSFVVKV---FQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGR 207 (209)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEE---ecCcCHHHHHHHHHhCceEEEEECCccccccCceeEEEeecc
Confidence 345678888889999999998864 4444434333444333 455554322 2346666665553
No 21
>PRK14967 putative methyltransferase; Provisional
Probab=92.00 E-value=0.61 Score=33.35 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcE
Q psy7378 25 IVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVK 70 (90)
Q Consensus 25 ~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~ 70 (90)
+++.++++.+.++|||||++++.+-++. +-..+-..+++.++.
T Consensus 136 ~~~~~~l~~a~~~Lk~gG~l~~~~~~~~---~~~~~~~~l~~~g~~ 178 (223)
T PRK14967 136 AVLDRLCDAAPALLAPGGSLLLVQSELS---GVERTLTRLSEAGLD 178 (223)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEeccc---CHHHHHHHHHHCCCC
Confidence 3456677777888999999998554443 222334445555443
No 22
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=91.98 E-value=0.32 Score=33.66 Aligned_cols=38 Identities=32% Similarity=0.172 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCc
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDV 69 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~ 69 (90)
.+++.+.+.|||||.+++... ..++...+..+++++++
T Consensus 112 ~~l~~~~~~Lk~gG~lv~~~~---~~~~~~~~~~~l~~~g~ 149 (187)
T PRK08287 112 AIIDWSLAHLHPGGRLVLTFI---LLENLHSALAHLEKCGV 149 (187)
T ss_pred HHHHHHHHhcCCCeEEEEEEe---cHhhHHHHHHHHHHCCC
Confidence 345666778899999998643 34666677777877654
No 23
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=91.67 E-value=0.75 Score=34.58 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeecCCCCCCCCccc
Q psy7378 25 IVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFGTEGFVN 85 (90)
Q Consensus 25 ~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~~~~~g~dGf~~ 85 (90)
++..++++.+.++|+|||.++.-+-. ....|..++.+.++..... ..+.+|||.
T Consensus 228 ~~~~~il~~a~~~L~~gG~l~~e~g~-----~~~~v~~~~~~~~~~~~~~--~~~~~~~~~ 281 (284)
T TIGR03533 228 DLVRRILAEAADHLNENGVLVVEVGN-----SMEALEEAYPDVPFTWLEF--ENGGDGVFL 281 (284)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECc-----CHHHHHHHHHhCCCceeee--cCCCcEEEE
Confidence 34556677778889999999875542 2346677777666655443 347788874
No 24
>KOG1540|consensus
Probab=90.87 E-value=0.22 Score=38.54 Aligned_cols=42 Identities=12% Similarity=0.248 Sum_probs=33.0
Q ss_pred HHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeec
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
+++.|-+.|||||++. |=-++.+|.+.+.+|...+-+++++.
T Consensus 196 ~l~EAYRVLKpGGrf~---cLeFskv~~~~l~~fy~~ysf~Vlpv 237 (296)
T KOG1540|consen 196 ALREAYRVLKPGGRFS---CLEFSKVENEPLKWFYDQYSFDVLPV 237 (296)
T ss_pred HHHHHHHhcCCCcEEE---EEEccccccHHHHHHHHhhhhhhhch
Confidence 5667778899999776 98899999888899988765555553
No 25
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=90.82 E-value=0.98 Score=33.01 Aligned_cols=45 Identities=27% Similarity=0.201 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeec
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
+...+..+.+.|||||.++.+... .+....+...++++++++...
T Consensus 192 ~~~l~~~~~~~LkpgG~lilsgi~---~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 192 LLELAPDLARLLKPGGRLILSGIL---EEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECc---HhhHHHHHHHHHHCCCEEEEE
Confidence 334556667788999999998543 234445566667778887664
No 26
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.69 E-value=1.5 Score=30.85 Aligned_cols=53 Identities=8% Similarity=-0.024 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeec
Q psy7378 21 KTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 21 ~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
++.++||.+-+..|.++|+++|.+.-+-|.-.|. +.-+|..+-++.++.+...
T Consensus 98 ~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-~~W~i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 98 RLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-DSWNIEELAAEAGLVLVRK 150 (166)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-ccccHHHHHHhcCCEEEEE
Confidence 3556799999999999999999999999999886 6667777666678877665
No 27
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=90.56 E-value=0.71 Score=34.09 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcE
Q psy7378 25 IVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVK 70 (90)
Q Consensus 25 ~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~ 70 (90)
+++..+++.+.++|||||.+++.+..- ...-|...+.+++++
T Consensus 193 ~~~~~i~~~a~~~L~~gG~l~l~~~~~----~~~~v~~~l~~~g~~ 234 (251)
T TIGR03704 193 DVLRRVAAGAPDWLAPGGHLLVETSER----QAPLAVEAFARAGLI 234 (251)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECcc----hHHHHHHHHHHCCCC
Confidence 345667777888999999999987642 233455566655543
No 28
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=89.63 E-value=0.14 Score=32.20 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCC
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS 50 (90)
+....++.+.++|||||.+++.+|.
T Consensus 93 ~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 93 LYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 3344566677888999999999873
No 29
>PRK07402 precorrin-6B methylase; Provisional
Probab=89.42 E-value=0.56 Score=32.76 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhc---CCcEEeec
Q psy7378 28 LEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRK---RDVKLVPT 74 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~---~~~~l~~~ 74 (90)
..+++.+.+.|+|||.+++.++++. .-..+...+++ .+++.+.+
T Consensus 122 ~~~l~~~~~~LkpgG~li~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 122 KEILQAVWQYLKPGGRLVATASSLE---GLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred HHHHHHHHHhcCCCeEEEEEeecHH---HHHHHHHHHHhcCCCCceEEEE
Confidence 3556777788999999999988632 22223344432 25666555
No 30
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=87.76 E-value=2.6 Score=29.57 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhc---CCcEEeecCC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRK---RDVKLVPTGL 76 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~---~~~~l~~~~~ 76 (90)
.+++.+.++|+|||.++.. .....+..+..+.++ .+++.++.++
T Consensus 123 ~~~~~~~~~LkpgG~lvi~----~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 123 VLLELTLNLLKVGGYFLAY----KGKKYLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred HHHHHHHHhcCCCCEEEEE----cCCCcHHHHHHHHHhhhhcCceEeeccc
Confidence 3455567788999999975 345556666666665 3677766543
No 31
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=87.63 E-value=0.24 Score=29.32 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=14.4
Q ss_pred HHHHHHhhcCCCCCEEEE
Q psy7378 29 EAIDCLNARSPTGGYLVY 46 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvY 46 (90)
++++.+.+.|||||.++.
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 456777888999999974
No 32
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=87.60 E-value=1 Score=35.32 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC
Q psy7378 20 GKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR 67 (90)
Q Consensus 20 ~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~ 67 (90)
....++-|+++|+.+..+|+|||+|+-. ||+.-|+ .+|++|.+++
T Consensus 216 VNdEL~~L~~~L~~a~~~L~~gGRl~VI--sFHSLED-RiVK~ff~~~ 260 (314)
T COG0275 216 VNDELEELEEALEAALDLLKPGGRLAVI--SFHSLED-RIVKNFFKEL 260 (314)
T ss_pred ehhHHHHHHHHHHHHHHhhCCCcEEEEE--EecchHH-HHHHHHHHHh
Confidence 3444566788888889999999998754 3444443 6778888765
No 33
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=87.54 E-value=0.55 Score=35.97 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=18.2
Q ss_pred HHHHhhcCCCCCEEEEEcCCCCcccC
Q psy7378 31 IDCLNARSPTGGYLVYSTCSILPEEN 56 (90)
Q Consensus 31 l~~~~~~lkpgG~lvYsTCS~~~eEN 56 (90)
+..+.++|+|||.|+-||||-.-...
T Consensus 221 ~~~a~~ll~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 221 LRRAMKLLKPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp HHHHHHTEEEEEEEEEEE--TTS-HH
T ss_pred HHHHHHhcCCCCEEEEEcCCcccCHH
Confidence 34455778999999999999888765
No 34
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=87.49 E-value=0.72 Score=35.08 Aligned_cols=27 Identities=11% Similarity=0.324 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCC
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCSIL 52 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS~~ 52 (90)
+...+++.+.+.|||||.++|.+++-.
T Consensus 272 l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 272 LYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred HHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 445566667778899999999998754
No 35
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=87.36 E-value=1.8 Score=30.61 Aligned_cols=44 Identities=14% Similarity=0.124 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEee
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVP 73 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~ 73 (90)
.+..+++.+.++|+|||.+++.+ +. .....+..++++.+++.+.
T Consensus 195 ~~~~~i~~~~~~L~~gG~~~~~~-~~---~~~~~~~~~l~~~gf~~v~ 238 (251)
T TIGR03534 195 FYRRIIAQAPRLLKPGGWLLLEI-GY---DQGEAVRALFEAAGFADVE 238 (251)
T ss_pred HHHHHHHHHHHhcccCCEEEEEE-Cc---cHHHHHHHHHHhCCCCceE
Confidence 34456777788899999999853 32 2234456666666665444
No 36
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=87.03 E-value=1 Score=34.01 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcE
Q psy7378 12 ALRALSTIGKTSLIV-ILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVK 70 (90)
Q Consensus 12 ~~~~l~~l~~~Q~~L-l~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~ 70 (90)
+....+.+++-+..+ ++..++.+.++|||||.+.+ +++.|.=.-+-..+++++++
T Consensus 133 ~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~----V~r~erl~ei~~~l~~~~~~ 188 (248)
T COG4123 133 NENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF----VHRPERLAEIIELLKSYNLE 188 (248)
T ss_pred CcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE----EecHHHHHHHHHHHHhcCCC
Confidence 344566666666666 78889999999999999998 45666554555556665443
No 37
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=86.88 E-value=1.4 Score=31.17 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=24.9
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHh---cCCcEEe
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALR---KRDVKLV 72 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~---~~~~~l~ 72 (90)
..++.+.+.|||||.++++|+ ++..+.++++ +.++...
T Consensus 137 ~~l~~i~~~LkpgG~l~i~~~------~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 137 EFLALYARKLKPGGEIHFATD------WEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred HHHHHHHHHcCCCCEEEEEcC------CHHHHHHHHHHHHhCccccc
Confidence 345666778899999999875 4455555443 4455544
No 38
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=86.56 E-value=1.4 Score=36.00 Aligned_cols=61 Identities=10% Similarity=-0.018 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccC--HHHHHHHHhcCCcEEeecC
Q psy7378 14 RALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEEN--EAVVNYALRKRDVKLVPTG 75 (90)
Q Consensus 14 ~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eEN--E~vV~~~l~~~~~~l~~~~ 75 (90)
.++..+-.-+.+|-+.+.+...+. .|.-+.||+||+.--.-. |.+++++-+++++.+++..
T Consensus 73 ~Di~~~~g~~~~L~~~i~ei~~~~-~p~~ifv~~TC~t~iIGdDle~va~~~~~~~gipVV~v~ 135 (457)
T CHL00073 73 GDISAQLNDYEELKRLCLQIKKDR-NPSVIVWIGTCTTEIIKMDLEGMAPKLEAEIGIPIVVAR 135 (457)
T ss_pred hhhhhhcCCHHHHHHHHHHHHHhC-CCCEEEEEccCcHHhhccCHHHHHHHHHHhhCCCEEEEe
Confidence 444433334444544444444444 899999999999765433 5666666556788887763
No 39
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=86.44 E-value=0.7 Score=35.01 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=18.0
Q ss_pred HHHHHhhcCCCCCEEEEEcCC
Q psy7378 30 AIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS 50 (90)
.+.+++++|||||.++.||=-
T Consensus 143 ~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 143 FLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred HHHHHHHHcCCCcEEEEeccc
Confidence 567788999999999999854
No 40
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=86.07 E-value=1.2 Score=35.77 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=25.7
Q ss_pred HHHHHhhcCCCCCEEEEEcCCCCcccCH--HHHHHHHh
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSILPEENE--AVVNYALR 65 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~~~eENE--~vV~~~l~ 65 (90)
++..+.++|+|||+++-||||-.-...+ +.|.....
T Consensus 318 l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~ 355 (393)
T COG1092 318 LNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAA 355 (393)
T ss_pred HHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHH
Confidence 3444556779999999999998887774 44444443
No 41
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=85.97 E-value=2.9 Score=28.89 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=16.7
Q ss_pred HHHHHHHHhhcCCCCCEEEEEc
Q psy7378 27 ILEAIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsT 48 (90)
+..+++.+.+.|+|||+++...
T Consensus 125 ~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 125 VELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHHHHHHccCCCEEEEEE
Confidence 4456677777889999999853
No 42
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=85.54 E-value=1.8 Score=36.54 Aligned_cols=41 Identities=20% Similarity=0.076 Sum_probs=26.5
Q ss_pred HHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeec
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
++..+.++|+|||.+++++|+-..... ...+...++.+..+
T Consensus 638 l~~~a~~lL~~gG~l~~~~~~~~~~~~----~~~~~~~g~~~~~i 678 (702)
T PRK11783 638 LIKDAKRLLRPGGTLYFSNNKRGFKMD----EEGLAKLGLKAEEI 678 (702)
T ss_pred HHHHHHHHcCCCCEEEEEeCCccCChh----HHHHHhCCCeEEEE
Confidence 344455678999999999999776554 33344445444443
No 43
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=85.38 E-value=2.7 Score=28.97 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=17.3
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSI 51 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~ 51 (90)
.+++.+.++|+|||.++..+.+.
T Consensus 124 ~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 124 KALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred HHHHHHHHHcCCCcEEEEEEecC
Confidence 35666778889999999876543
No 44
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=85.30 E-value=1.8 Score=31.43 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=15.0
Q ss_pred HHHHHHhhcCCCCCEEEEEc
Q psy7378 29 EAIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsT 48 (90)
.+++.+.++|||||.++-..
T Consensus 130 ~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 130 SVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHHHHHHHHcCCCeEEEEEE
Confidence 35666778899999997543
No 45
>PRK04266 fibrillarin; Provisional
Probab=85.08 E-value=2.5 Score=30.96 Aligned_cols=45 Identities=22% Similarity=0.204 Sum_probs=24.9
Q ss_pred HHHHHhhcCCCCCEEEEEcC------CCCcccCHHHHHHHHhcCCcEEeec
Q psy7378 30 AIDCLNARSPTGGYLVYSTC------SILPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTC------S~~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
+++.+.+.|||||.++-+.. ...+.+--+.....++..+|+.+..
T Consensus 158 ~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~ 208 (226)
T PRK04266 158 AIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEV 208 (226)
T ss_pred HHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 45666778899999998432 2222111111224555557766553
No 46
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=84.44 E-value=2.4 Score=33.21 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC
Q psy7378 25 IVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR 67 (90)
Q Consensus 25 ~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~ 67 (90)
+++.+.|+-+...+.|||.|||..=..+|+ -+.|+++|.+|
T Consensus 226 ~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ--le~IAr~LtsH 266 (311)
T PF12147_consen 226 DLVRRSLAGLARALEPGGYLIYTGQPWHPQ--LEMIARVLTSH 266 (311)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEcCCCCCcc--hHHHHHHHhcc
Confidence 456666777777789999999966677773 24578888776
No 47
>KOG1099|consensus
Probab=84.12 E-value=1.2 Score=34.35 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHH
Q psy7378 22 TSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVN 61 (90)
Q Consensus 22 ~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~ 61 (90)
.|.+||..||..+...|||||..|= -++.-++--.+-
T Consensus 137 ~Q~qLllaAl~i~t~Vlk~Gg~FVa---KifRg~~tslLy 173 (294)
T KOG1099|consen 137 VQAQLLLAALNIATCVLKPGGSFVA---KIFRGRDTSLLY 173 (294)
T ss_pred HHHHHHHHHHHHHhheecCCCeeeh---hhhccCchHHHH
Confidence 5677999999999999999999873 345555544443
No 48
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=83.94 E-value=2 Score=29.41 Aligned_cols=54 Identities=20% Similarity=0.095 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC-CcEEeecC
Q psy7378 20 GKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR-DVKLVPTG 75 (90)
Q Consensus 20 ~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~-~~~l~~~~ 75 (90)
+..+.+|+..++..+..+|+|||.+|--+-.-.. .+.++..+-..+ .+.+..++
T Consensus 111 ~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~--~~~~~~~l~~~F~~v~~~Kp~ 165 (181)
T PF01728_consen 111 EFISIRLILSQLLLALELLKPGGTFVIKVFKGPE--IEELIYLLKRCFSKVKIVKPP 165 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT--SHHHHHHHHHHHHHEEEEE-T
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc--HHHHHHHHHhCCeEEEEEECc
Confidence 4455567777788888889999988776544222 245555544444 47776654
No 49
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=83.49 E-value=3.2 Score=31.10 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=27.5
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeec
Q psy7378 28 LEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
..++..+.+.|||||.++.|... . +....|...++++ ++++..
T Consensus 239 ~~ll~~~~~~LkpgG~li~sgi~--~-~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 239 KELYPQFSRLVKPGGWLILSGIL--E-TQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred HHHHHHHHHHcCCCcEEEEEeCc--H-hHHHHHHHHHHcc-CceeeE
Confidence 34566667888999999998743 2 3344455555555 666553
No 50
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=83.25 E-value=1.6 Score=33.88 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCCccc
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCSILPEE 55 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS~~~eE 55 (90)
...+.+..+.+.|||||.++..+.++.|.|
T Consensus 281 ~~~~~i~~a~~~LkpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 281 AAQTLIRGAVRHLNSGGELRIVANAFLPYP 310 (342)
T ss_pred HHHHHHHHHHHhcCcCCEEEEEEeCCCChH
Confidence 344566777888999999999999999876
No 51
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=83.23 E-value=3.8 Score=29.62 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcE
Q psy7378 25 IVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVK 70 (90)
Q Consensus 25 ~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~ 70 (90)
+.+..+++.+.++|+|||.++..+- .. ....+..++.+.++.
T Consensus 215 ~~~~~~~~~~~~~Lk~gG~l~~e~g-~~---~~~~~~~~l~~~gf~ 256 (275)
T PRK09328 215 DFYRRIIEQAPRYLKPGGWLLLEIG-YD---QGEAVRALLAAAGFA 256 (275)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEEC-ch---HHHHHHHHHHhCCCc
Confidence 4556677777888999999998542 22 123456666666654
No 52
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=83.08 E-value=3.6 Score=31.77 Aligned_cols=24 Identities=25% Similarity=0.140 Sum_probs=18.6
Q ss_pred HHHHHhhcCCCCCEEEEEcCCCCc
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSILP 53 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~~~ 53 (90)
+|+.+.+.|||||.||..|..+..
T Consensus 207 ~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 207 HLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred HHHHHHHhcCCCCEEEEEEEEecC
Confidence 566677788999999998865543
No 53
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=83.08 E-value=1.1 Score=27.42 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=11.8
Q ss_pred HHHHHHHhhcCCCCCEE
Q psy7378 28 LEAIDCLNARSPTGGYL 44 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~l 44 (90)
..+++.+.++|||||.|
T Consensus 83 ~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 83 EAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp HHHHHHHTTT-TSS-EE
T ss_pred HHHHHHHHHHcCCCCCC
Confidence 35677788999999986
No 54
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=82.90 E-value=5.1 Score=28.31 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=16.6
Q ss_pred HHHHHhhcCCCCCEEEEEcCC
Q psy7378 30 AIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS 50 (90)
+++.+.++|+|||.++.+++.
T Consensus 133 ~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 133 FVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred HHHHHHHHcCCCcEEEEEecC
Confidence 456667778999999998764
No 55
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=82.60 E-value=2.4 Score=34.25 Aligned_cols=48 Identities=27% Similarity=0.366 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCCC-CCEEEEEcCCCCcc-cC-HHHHHHHHhcCCcEEeec
Q psy7378 27 ILEAIDCLNARSPT-GGYLVYSTCSILPE-EN-EAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkp-gG~lvYsTCS~~~e-EN-E~vV~~~l~~~~~~l~~~ 74 (90)
|.++++.+.+.-+| ..+.||+||...-. ++ +.+++.+-++.++.++++
T Consensus 119 L~~aI~e~~~~~~P~~~I~V~tTC~~~lIGDDi~av~~~~~~~~~~pVi~v 169 (466)
T TIGR01282 119 LKKAIDEIEELFPLNKGISIQSECPVGLIGDDIEAVAKKASKELGKPVVPV 169 (466)
T ss_pred HHHHHHHHHHhCCcccEEEEeCCChHHHhccCHHHHHHHHhhhcCCcEEEE
Confidence 34566666677788 89999999986443 33 444445434456666665
No 56
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=82.54 E-value=2.3 Score=33.53 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCCcc-cC-HHHHHHHHhcCCcEEeec
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSILPE-EN-EAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~~e-EN-E~vV~~~l~~~~~~l~~~ 74 (90)
|.++++.+.+..+|..+.||+||+..-. ++ +.+++.+-++.++.+.++
T Consensus 77 L~~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi~~v~~~~~~~~~~pvi~v 126 (426)
T cd01972 77 LEDTIKEAYSRYKPKAIFVATSCATGIIGDDVESVVEELEDEIGIPVVAL 126 (426)
T ss_pred HHHHHHHHHHhCCCCEEEEECCChHHHhccCHHHHHHHHHHhhCCCEEEE
Confidence 3445566666679999999999976543 33 333444333446666554
No 57
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=82.44 E-value=4.1 Score=28.95 Aligned_cols=42 Identities=7% Similarity=-0.068 Sum_probs=27.5
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEee
Q psy7378 28 LEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVP 73 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~ 73 (90)
...++.+.++|||||.++..-.+... ..+..+....|+.+..
T Consensus 125 ~~~l~~~~~~LkpGG~lv~~~~~~~~----~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 125 SDLVELCLPLLKPGGRFLALKGRDPE----EEIAELPKALGGKVEE 166 (187)
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCChH----HHHHHHHHhcCceEee
Confidence 34566777889999999998766544 3344444445665533
No 58
>PF13728 TraF: F plasmid transfer operon protein
Probab=82.23 E-value=8 Score=28.16 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=32.4
Q ss_pred CCCCEEEE--EcCCCCcccCHHHHHHHHhcCCcEEeecCCCC-CCCCccccC
Q psy7378 39 PTGGYLVY--STCSILPEENEAVVNYALRKRDVKLVPTGLDF-GTEGFVNYR 87 (90)
Q Consensus 39 kpgG~lvY--sTCS~~~eENE~vV~~~l~~~~~~l~~~~~~~-g~dGf~~~~ 87 (90)
+.-|.+++ ++|.++...- -+++.|-+++|+++..+..+. +.++|..++
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~-pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~ 170 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQA-PILQQFADKYGFSVIPVSLDGRPIPSFPNPR 170 (215)
T ss_pred hCeEEEEEEcCCCchhHHHH-HHHHHHHHHhCCEEEEEecCCCCCcCCCCCC
Confidence 34554442 8999776443 466788888899999987663 466776653
No 59
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=82.01 E-value=5.9 Score=29.49 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHh-cCCcE
Q psy7378 25 IVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALR-KRDVK 70 (90)
Q Consensus 25 ~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~-~~~~~ 70 (90)
+.+.++++.+.++|+|||.+++-++.-.. ..+..++. +.++.
T Consensus 221 ~~~~~ii~~a~~~L~~gG~l~~e~g~~q~----~~~~~~~~~~~~~~ 263 (284)
T TIGR00536 221 NILRQIIELAPDYLKPNGFLVCEIGNWQQ----KSLKELLRIKFTWY 263 (284)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEECccHH----HHHHHHHHhcCCCc
Confidence 45666777788889999999987765333 34455554 44543
No 60
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=81.63 E-value=4 Score=31.59 Aligned_cols=49 Identities=29% Similarity=0.380 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCCcccC--HHHHHHHHhcCCcEEeec
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCSILPEEN--EAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS~~~eEN--E~vV~~~l~~~~~~l~~~ 74 (90)
-|.++++.+.+..+|.-+.|++||...-.-. +.+++.+-++.++.++++
T Consensus 74 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~vi~v 124 (406)
T cd01967 74 KLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDIEAVAKEASKELGIPVIPV 124 (406)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhhCCCEEEE
Confidence 3445666666667999999999998765433 445555444456666554
No 61
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=81.48 E-value=2.6 Score=32.96 Aligned_cols=48 Identities=6% Similarity=0.080 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCCcc-cC-HHHHHHHHhcCCcEEeec
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSILPE-EN-EAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~~e-EN-E~vV~~~l~~~~~~l~~~ 74 (90)
|.++++.+.+..+|.-+.||+||...-. ++ +.+++.+-++.++.++++
T Consensus 75 L~~aI~ei~~~~~P~~I~V~sTCv~e~IGDDi~~v~~~~~~~~~~pvi~v 124 (396)
T cd01979 75 LDRVVTQIKRDRNPSVIFLIGSCTTEVIKMDLEGAAPRLSAEIGVPILVA 124 (396)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCHHHHHhcCHHHHHHHHhhcCCCcEEEe
Confidence 3445566666678999999999986543 33 334444333446666665
No 62
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=81.10 E-value=9.5 Score=28.77 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=36.5
Q ss_pred HHHHHHHhhcCCCCCEEEE--EcCCCCcccCHHHHHHHHhcCCcEEeecCCCC-CCCCcccc
Q psy7378 28 LEAIDCLNARSPTGGYLVY--STCSILPEENEAVVNYALRKRDVKLVPTGLDF-GTEGFVNY 86 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lvY--sTCS~~~eENE~vV~~~l~~~~~~l~~~~~~~-g~dGf~~~ 86 (90)
+.+++.++ +..|.+.+ |+|+++...- -+|+.|-+++++++.++..+. +.++|..+
T Consensus 135 ~~~i~~la---~~~GL~fFy~s~Cp~C~~~a-Pil~~fa~~yg~~v~~VS~DG~~~p~fp~~ 192 (248)
T PRK13703 135 RQAIAKLA---EHYGLMFFYRGQDPIDGQLA-QVINDFRDTYGLSVIPVSVDGVINPLLPDS 192 (248)
T ss_pred HHHHHHHH---hcceEEEEECCCCchhHHHH-HHHHHHHHHhCCeEEEEecCCCCCCCCCCC
Confidence 34444443 34555544 7899987655 456888888999999987653 46676654
No 63
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=80.15 E-value=6.6 Score=27.25 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=15.7
Q ss_pred HHHHHhhcCCCCCEEEEEcCCC
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSI 51 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~ 51 (90)
+++.+.++|+|||.+++++-+.
T Consensus 140 ~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 140 ALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred HHHHHHHhccCCcEEEEEEecC
Confidence 4555667789999999875433
No 64
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=79.32 E-value=2.6 Score=26.22 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=15.2
Q ss_pred HHHHHHhhcCCCCCEEEEEc
Q psy7378 29 EAIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsT 48 (90)
++++.+.+.|||||.++-..
T Consensus 103 ~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 103 EILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred HHHHHHHHHcCCCCEEEEEe
Confidence 45666777889999998754
No 65
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=79.19 E-value=12 Score=28.33 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=37.2
Q ss_pred HHHHHHHHhhcCCCCCEEEE--EcCCCCcccCHHHHHHHHhcCCcEEeecCCCC-CCCCccccC
Q psy7378 27 ILEAIDCLNARSPTGGYLVY--STCSILPEENEAVVNYALRKRDVKLVPTGLDF-GTEGFVNYR 87 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvY--sTCS~~~eENE~vV~~~l~~~~~~l~~~~~~~-g~dGf~~~~ 87 (90)
-+++++.++ +.-|.+.+ ++|.++... .-+|+.|-+++|+++.++..+. +.+||..++
T Consensus 141 ~~~~i~~la---~~~gL~fFy~~~C~~C~~~-apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~ 200 (256)
T TIGR02739 141 KEKAIQQLS---QSYGLFFFYRGKSPISQKM-APVIQAFAKEYGISVIPISVDGTLIPGLPNSR 200 (256)
T ss_pred HHHHHHHHH---hceeEEEEECCCCchhHHH-HHHHHHHHHHhCCeEEEEecCCCCCCCCCCcc
Confidence 334454443 44666554 679877744 3466788888999999987663 457776653
No 66
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=78.97 E-value=1.1 Score=29.19 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=17.1
Q ss_pred HHHHHHhhcCCCCCEEEEEcCC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS 50 (90)
.+|+.+.++|||||.++.++=.
T Consensus 96 ~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 96 EFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp HHHHHHHHCEEEEEEEEEEEEB
T ss_pred HHHHHHHHhcCCCCEEEEEEcC
Confidence 4566677888999999988743
No 67
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=78.64 E-value=3.4 Score=32.57 Aligned_cols=49 Identities=8% Similarity=0.107 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCCccc-C-HHHHHHHHhcCCcEEeec
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCSILPEE-N-EAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS~~~eE-N-E~vV~~~l~~~~~~l~~~ 74 (90)
-|.++++.+.+..+|.-+.||+||...-.= + +.+++.+-++.++.+.++
T Consensus 71 ~L~~aI~~i~~~~~P~~I~V~tTC~se~IGDDi~~v~~~~~~~~~~pVi~v 121 (407)
T TIGR01279 71 ELDRVVEQIKRDRNPSVIFLLSSCTPEVIKMDLEGLAERLSTNFGVPVLFA 121 (407)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCchHHHHHhhHHHHHHHHHHhhCCCEEEe
Confidence 455666777777799999999999865432 2 333334333345655554
No 68
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=78.61 E-value=8.7 Score=26.76 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=16.2
Q ss_pred HHHHHhhcCCCCCEEEEEcCC
Q psy7378 30 AIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS 50 (90)
+++.+.+.|+|||.++.++|.
T Consensus 131 ~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 131 FIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HHHHHHHhcCCCcEEEEEecC
Confidence 455666778999999988874
No 69
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=78.38 E-value=7.2 Score=30.32 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeec
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
.|.+....+...+||||+++.|= +..+. ++.|...+.+.+|++++.
T Consensus 241 vl~~La~~~~~~lkpgg~lIlSG--Il~~q-~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 241 VLVELAPDIKRLLKPGGRLILSG--ILEDQ-AESVAEAYEQAGFEVVEV 286 (300)
T ss_pred HHHHHHHHHHHHcCCCceEEEEe--ehHhH-HHHHHHHHHhCCCeEeEE
Confidence 34445555667789999999998 55544 777777787778888775
No 70
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=78.37 E-value=9.1 Score=26.78 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCC---Cccc---------CHHHHHHHHhcCCcEEeec
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSI---LPEE---------NEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~---~~eE---------NE~vV~~~l~~~~~~l~~~ 74 (90)
..++.+.++|||||.++.++-.. .+.+ .......++++.++++.+.
T Consensus 85 ~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 85 DLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred HHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEe
Confidence 45666778889999999865321 1111 2334455666677777554
No 71
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=78.05 E-value=2.4 Score=30.52 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=15.6
Q ss_pred HHHHHHhhcCCCCCEEEEEc
Q psy7378 29 EAIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsT 48 (90)
.++..+.+.|||||.++++|
T Consensus 121 ~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 121 TALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred HHHHHHHHHcCCCeEEEEEe
Confidence 34555667789999999986
No 72
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=78.01 E-value=4.2 Score=32.45 Aligned_cols=48 Identities=29% Similarity=0.400 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCCcc-cC-HHHHHHHHhcCCcEEeec
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSILPE-EN-EAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~~e-EN-E~vV~~~l~~~~~~l~~~ 74 (90)
|.++++.+....+|.-+.||+||...-. ++ +.+++.+-++.++.+.++
T Consensus 109 L~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi~~v~~e~~~~~~~~vi~v 158 (456)
T TIGR01283 109 LFHAIREIVERYHPPAVFVYSTCVPGLIGDDLEAVCKAAAEKTGIPVIPV 158 (456)
T ss_pred HHHHHHHHHHhCCCCEEEEECCChHHHhcCCHHHHHHHHHHHhCCCEEEE
Confidence 3445555566678999999999987654 33 444455444456666665
No 73
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=77.87 E-value=2.5 Score=29.65 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=15.7
Q ss_pred HHHHHHhhcCCCCCEEEEEc
Q psy7378 29 EAIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsT 48 (90)
..++.+.+.|||||.++.+|
T Consensus 113 ~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 113 HFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred HHHHHHHHHhCCCCEEEEEe
Confidence 34566677889999998877
No 74
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=77.70 E-value=6.3 Score=32.50 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=27.5
Q ss_pred HHHHHhhcC-CCCCEEEEEcCCCCcccC--HHHHHHHHhcC-CcEEeec
Q psy7378 30 AIDCLNARS-PTGGYLVYSTCSILPEEN--EAVVNYALRKR-DVKLVPT 74 (90)
Q Consensus 30 al~~~~~~l-kpgG~lvYsTCS~~~eEN--E~vV~~~l~~~-~~~l~~~ 74 (90)
++..+.... +|..+.||+||+.--.=. +.+++.+-++. ++.++++
T Consensus 118 ~I~ea~~~~~~p~~I~V~tTC~t~lIGDDi~av~k~~~~~~~~~pVi~v 166 (513)
T TIGR01861 118 NIIEAFKAFPHIKRMTIYQTCATALIGDDIAAIAKEVMEEMPDVDIFVC 166 (513)
T ss_pred HHHHHHHhCCCCCeEEEEccCchhhccCCHHHHHHHHHHhcCCCcEEEE
Confidence 334444444 578899999999876621 34444544455 5666665
No 75
>PRK08317 hypothetical protein; Provisional
Probab=77.28 E-value=5.4 Score=27.44 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=15.9
Q ss_pred HHHHHhhcCCCCCEEEEEcCC
Q psy7378 30 AIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS 50 (90)
+++.+.+.|||||.++.+.+.
T Consensus 106 ~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 106 ALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred HHHHHHHHhcCCcEEEEEecC
Confidence 445556678999999988764
No 76
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=77.11 E-value=4.6 Score=32.02 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCC-CCEEEEEcCCCCcc-cC-HHHHHHHHhcCCcEEeec
Q psy7378 27 ILEAIDCLNARSPT-GGYLVYSTCSILPE-EN-EAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkp-gG~lvYsTCS~~~e-EN-E~vV~~~l~~~~~~l~~~ 74 (90)
|.++++.+.+..+| ..+.||+||+..-. ++ +.+++.+-++.++.+.++
T Consensus 86 L~~~I~~~~~~~~p~~~I~V~tTC~~~iIGdDi~~v~~~~~~~~~~pvi~v 136 (421)
T cd01976 86 LAKAIDEAYELFPLNKGISVQSECPVGLIGDDIEAVARKASKELGIPVVPV 136 (421)
T ss_pred HHHHHHHHHHhCCCccEEEEECCChHHHhccCHHHHHHHHHHhhCCCEEEE
Confidence 34556666666688 99999999986432 33 344444433446666665
No 77
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=76.97 E-value=6 Score=30.67 Aligned_cols=51 Identities=22% Similarity=0.185 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC
Q psy7378 14 RALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR 67 (90)
Q Consensus 14 ~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~ 67 (90)
+.|+=...-..+-|+++|+.+..+|+|||+|+- =|++.-|+.- |+++.+.+
T Consensus 206 QALRI~VN~EL~~L~~~L~~~~~~L~~gGrl~V--ISfHSLEDRi-VK~~f~~~ 256 (305)
T TIGR00006 206 QAIRIYVNDELEELEEALQFAPNLLAPGGRLSI--ISFHSLEDRI-VKNFFREL 256 (305)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhcCCCEEEE--EecCcHHHHH-HHHHHHHh
Confidence 333333444556778888999999999999985 4788888754 46655543
No 78
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=76.62 E-value=1.7 Score=32.92 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcC---C---CC------cccCHHHHHHHHhcCCcEEeecC
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTC---S---IL------PEENEAVVNYALRKRDVKLVPTG 75 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTC---S---~~------~eENE~vV~~~l~~~~~~l~~~~ 75 (90)
-.+|++++..+|||||.||.+.. | +- --=|++.|...|++.|+.+....
T Consensus 178 y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 178 YRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 44678888999999999997643 1 10 11257899999998888877764
No 79
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=76.33 E-value=4.4 Score=23.11 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=13.8
Q ss_pred HHHHHHhhcCCCCCEEEEE
Q psy7378 29 EAIDCLNARSPTGGYLVYS 47 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYs 47 (90)
..++.+.+.++|||.++++
T Consensus 85 ~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 85 RFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred HHHHHHHHHcCCCCEEEEE
Confidence 3445555667999999886
No 80
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=76.28 E-value=2.9 Score=33.16 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEcC
Q psy7378 25 IVILEAIDCLNARSPTGGYLVYSTC 49 (90)
Q Consensus 25 ~Ll~~al~~~~~~lkpgG~lvYsTC 49 (90)
+|+.++|+.+...||+||.+|+++=
T Consensus 287 ~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 287 ELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred HHHHHHHHHHHHHhhcCcEEEEecC
Confidence 4778889999999999999999876
No 81
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=74.79 E-value=5.7 Score=31.42 Aligned_cols=47 Identities=17% Similarity=0.141 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCCcc-cC-HHHHHHHHhcCCcEEeec
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSILPE-EN-EAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~~e-EN-E~vV~~~l~~~~~~l~~~ 74 (90)
|.+++..+.+..+|.-+.|++||...-. ++ +.+++.+ ++.+..+.++
T Consensus 74 L~~~I~~~~~~~~p~~I~V~ttC~~~~IGdDi~~v~~~~-~~~~~~vi~v 122 (427)
T cd01971 74 LRELIKSTLSIIDADLFVVLTGCIAEIIGDDVGAVVSEF-QEGGAPIVYL 122 (427)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCcHHHhhcCHHHHHHHh-hhcCCCEEEE
Confidence 3445555666678999999999986543 33 4555555 5446666555
No 82
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=74.01 E-value=8.2 Score=31.02 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=29.1
Q ss_pred HHHHHHhhcC-CCCCEEEEEcCCCCcccC--HHHHHHHHhcCC-cEEeecC
Q psy7378 29 EAIDCLNARS-PTGGYLVYSTCSILPEEN--EAVVNYALRKRD-VKLVPTG 75 (90)
Q Consensus 29 ~al~~~~~~l-kpgG~lvYsTCS~~~eEN--E~vV~~~l~~~~-~~l~~~~ 75 (90)
++++.+.+.. +|..+.||+||+..-.=. +.+++.+-++++ +.++++.
T Consensus 114 ~aI~e~~~~~p~p~~I~V~stC~~~lIGDDi~~v~~e~~~~~~~~pvv~v~ 164 (457)
T TIGR01284 114 RCILEAFREFPEIKRMYTYATCTTALIGDDIDAIAREVMEEIPDVDVFAIN 164 (457)
T ss_pred HHHHHHHHhCCCCceEEEECCChHHhhccCHHHHHHHHHHhcCCCeEEEee
Confidence 3444444555 578999999999876522 444555444553 7776653
No 83
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=73.51 E-value=8.3 Score=29.69 Aligned_cols=50 Identities=22% Similarity=0.175 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhc
Q psy7378 14 RALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRK 66 (90)
Q Consensus 14 ~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~ 66 (90)
+.|+=...-..+-|+++|..+..+|+|||+|+-. |++.-|+.- |+++.++
T Consensus 202 QAlRI~VN~El~~L~~~L~~~~~~L~~gGrl~vi--sfHSlEDri-VK~~f~~ 251 (296)
T PRK00050 202 QALRIEVNDELEELERALEAALDLLKPGGRLAVI--SFHSLEDRI-VKRFFRE 251 (296)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCCEEEEE--ecCcHHHHH-HHHHHHH
Confidence 3333334445566777888888999999998754 678877754 4665543
No 84
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=72.19 E-value=10 Score=29.75 Aligned_cols=48 Identities=27% Similarity=0.372 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCCccc-C-HHHHHHHHhcCCcEEeec
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSILPEE-N-EAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~~eE-N-E~vV~~~l~~~~~~l~~~ 74 (90)
|.++++.+.+..+|.-+.|++||...-.= + +.+++.+-++.++.++++
T Consensus 74 L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~vi~v 123 (410)
T cd01968 74 LYKAILEIIERYHPKAVFVYSTCVVALIGDDIDAVCKTASEKFGIPVIPV 123 (410)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhhCCCEEEE
Confidence 44556666667789999999999876543 3 445555433446666554
No 85
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=72.13 E-value=11 Score=30.06 Aligned_cols=48 Identities=29% Similarity=0.206 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCC-cccC-HHHHHHHHhcC----CcEEeec
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSIL-PEEN-EAVVNYALRKR----DVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~-~eEN-E~vV~~~l~~~----~~~l~~~ 74 (90)
|.++++.+.+..+|.-+.||+||... --++ +.+++.+-+++ ++.+.++
T Consensus 79 L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~~~~~pvi~v 132 (432)
T TIGR01285 79 IEEAIDTLCQRNKPKAIGLLSTGLTETRGEDIARVVRQFREKHPQHKGTAVVTV 132 (432)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccccccCHHHHHHHHHhhcccccCCeEEEe
Confidence 44556666667799999999999963 2333 44555543332 4555554
No 86
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=71.85 E-value=2.4 Score=29.07 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCC
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS 50 (90)
++.+.++.+.++|||||.++...=+
T Consensus 118 ~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 118 LLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred hHHHHHHHHHHhccCCCEEEEEeec
Confidence 4455666677888999998654433
No 87
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=71.84 E-value=8.3 Score=31.15 Aligned_cols=48 Identities=25% Similarity=0.456 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCCcc-cC-HHHHHHHHhcCCcEEeec
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSILPE-EN-EAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~~e-EN-E~vV~~~l~~~~~~l~~~ 74 (90)
|.+++..+.+..+|.-+.|++||...-. ++ +.+++.+-++.++.++++
T Consensus 107 L~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi~~v~~~~~~~~~~pvi~v 156 (475)
T PRK14478 107 LFKAIDEIIEKYAPPAVFVYQTCVVALIGDDIDAVCKRAAEKFGIPVIPV 156 (475)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHHHHhhCCCEEEE
Confidence 3445555666678999999999987653 33 444445444457666665
No 88
>KOG2361|consensus
Probab=71.77 E-value=2.6 Score=32.34 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=17.6
Q ss_pred HHHHHHHHhhcCCCCCEEEEE
Q psy7378 27 ILEAIDCLNARSPTGGYLVYS 47 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYs 47 (90)
..++++++.++|||||.|++.
T Consensus 162 ~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 162 MQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred HHHHHHHHHHHhCCCcEEEEe
Confidence 346788889999999999975
No 89
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=71.24 E-value=5.5 Score=28.80 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=17.5
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCC
Q psy7378 28 LEAIDCLNARSPTGGYLVYSTCSI 51 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lvYsTCS~ 51 (90)
.+.++.+.++|||||++++.|=+.
T Consensus 132 ~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 132 QRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred HHHHHHHHHHcCCCCeEEEEEEEc
Confidence 345666777889999877776654
No 90
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=71.12 E-value=8.1 Score=30.39 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCCcc-cC-HHHHHHHHhcCCcEEeec
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSILPE-EN-EAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~~e-EN-E~vV~~~l~~~~~~l~~~ 74 (90)
|.+++..+.+..+|.-+.|++||...-. ++ +.+++.+-++.++.+.++
T Consensus 73 L~~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi~~v~~~~~~~~~~~vi~v 122 (430)
T cd01981 73 VVENITRKDKEEKPDLIVLTPTCTSSILQEDLQNFVRAAGLSSKSPVLPL 122 (430)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHhhCHHHHHHHhhhccCCCeEEe
Confidence 3344555556668999999999986543 22 333344333346666654
No 91
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=70.50 E-value=5.9 Score=27.00 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=16.9
Q ss_pred HHHHHHhhcCCCCCEEEEEcCC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS 50 (90)
++|+.+.+.|||||.++-...+
T Consensus 62 ~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 62 RAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred HHHHHHHHHcCcCeEEEEEECC
Confidence 4566677788999999876655
No 92
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=70.42 E-value=5.4 Score=29.41 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=17.5
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSI 51 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~ 51 (90)
.+++.+.+.|||||+++.++.+-
T Consensus 163 ~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 163 KAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred HHHHHHHHHcCcCcEEEEEECCC
Confidence 35666777889999999887653
No 93
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=68.98 E-value=3 Score=28.98 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=26.1
Q ss_pred HHHHHhhcCCCCCEEEEEcCCCCc---ccCHHHHHHHHhcC---CcEEeec
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSILP---EENEAVVNYALRKR---DVKLVPT 74 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~~~---eENE~vV~~~l~~~---~~~l~~~ 74 (90)
|++.+..+|+|||+|+-..=.=++ +|-+.+ ..+++.. .|.+...
T Consensus 74 Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av-~~~~~~L~~~~~~V~~~ 123 (140)
T PF06962_consen 74 ALEAALELLKPGGIITIVVYPGHPGGKEESEAV-EEFLASLDQKEFNVLKY 123 (140)
T ss_dssp HHHHHHHHEEEEEEEEEEE--STCHHHHHHHHH-HHHHHTS-TTTEEEEEE
T ss_pred HHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHH-HHHHHhCCcceEEEEEE
Confidence 556666778999999875544455 455555 4445433 4665443
No 94
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=68.85 E-value=12 Score=27.70 Aligned_cols=25 Identities=20% Similarity=0.092 Sum_probs=18.7
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCCc
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSILP 53 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~~~ 53 (90)
+.++.+.+.|+|||+++..++|...
T Consensus 167 ef~~~~~~~L~pgG~lv~~~~~~~~ 191 (270)
T TIGR00417 167 EFYELLKKALNEDGIFVAQSESPWI 191 (270)
T ss_pred HHHHHHHHHhCCCcEEEEcCCCccc
Confidence 3455666778999999998877543
No 95
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=68.41 E-value=13 Score=29.42 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=24.6
Q ss_pred hcCCCCCEEEEEcCCCCcccC--HHHHHHHHhcC-CcEEeec
Q psy7378 36 ARSPTGGYLVYSTCSILPEEN--EAVVNYALRKR-DVKLVPT 74 (90)
Q Consensus 36 ~~lkpgG~lvYsTCS~~~eEN--E~vV~~~l~~~-~~~l~~~ 74 (90)
+.-+|.-+.||+||...-.=. +.+++.+-++. ++.++++
T Consensus 94 ~~~~P~~I~V~tTC~~e~IGDDi~~v~~e~~~~~~~~pvv~v 135 (427)
T PRK02842 94 RRPNISVLFLVGSCPSEVIKLDLEGLAERLSTEFAGVPVLNY 135 (427)
T ss_pred ccCCCCEEEEECCChHHhhcCCHHHHHHHhhcccCCCeEEEe
Confidence 444799999999998755332 34445543444 5666554
No 96
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=67.92 E-value=5.6 Score=30.79 Aligned_cols=20 Identities=35% Similarity=0.277 Sum_probs=16.2
Q ss_pred HHHHHHhhcCCCCCEEEEEc
Q psy7378 29 EAIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsT 48 (90)
.+++.+.++|||||.++.+|
T Consensus 216 ~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 216 EFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HHHHHHHHHcCCCcEEEEEE
Confidence 35666778899999999886
No 97
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=67.50 E-value=5.8 Score=28.89 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=14.7
Q ss_pred HHHHHhhcCCCCCEEEEEc
Q psy7378 30 AIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsT 48 (90)
+++.+.+.|||||+++.+.
T Consensus 165 ~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 165 VFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred HHHHHHHHcCCCcEEEEEE
Confidence 4556667789999999864
No 98
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=67.24 E-value=2.8 Score=25.82 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEcCCCCc
Q psy7378 25 IVILEAIDCLNARSPTGGYLVYSTCSILP 53 (90)
Q Consensus 25 ~Ll~~al~~~~~~lkpgG~lvYsTCS~~~ 53 (90)
.|++.+++.| +..|.-|..+||+..
T Consensus 42 ~L~~~~l~~a----~~~~~kv~p~C~y~~ 66 (78)
T PF14542_consen 42 KLVEAALDYA----RENGLKVVPTCSYVA 66 (78)
T ss_dssp HHHHHHHHHH----HHTT-EEEETSHHHH
T ss_pred HHHHHHHHHH----HHCCCEEEEECHHHH
Confidence 4788888877 678999999999743
No 99
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=67.00 E-value=8.1 Score=31.51 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=16.6
Q ss_pred CCEEEEEcCCCCcccCHHHHHHHHh
Q psy7378 41 GGYLVYSTCSILPEENEAVVNYALR 65 (90)
Q Consensus 41 gG~lvYsTCS~~~eENE~vV~~~l~ 65 (90)
+-.-|||.||.+| .||+..++
T Consensus 12 ~~~Gi~SVCsahp----~VieAAl~ 32 (421)
T PRK15052 12 EHIGICSVCSAHP----LVIEAALA 32 (421)
T ss_pred CCCceeeECCCCH----HHHHHHHH
Confidence 3446999999999 88888654
No 100
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=66.80 E-value=15 Score=29.21 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCCccc-C-HHHHHHHHhcC----CcEEeec
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSILPEE-N-EAVVNYALRKR----DVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~~eE-N-E~vV~~~l~~~----~~~l~~~ 74 (90)
|.+++..+.+..+|.-+.|++||...-.= + +.+++.+-++. ++.+..+
T Consensus 73 L~~ai~~~~~~~~p~~I~v~ttC~~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v 126 (435)
T cd01974 73 LIDGLKNAYAVYKPDMIAVSTTCMAEVIGDDLNAFIKNAKNKGSIPADFPVPFA 126 (435)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHhhhhccHHHHHHHHHHhccCCCCCeEEEe
Confidence 34556666677789999999999875432 2 44444443333 4555554
No 101
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=66.67 E-value=8.7 Score=33.72 Aligned_cols=47 Identities=30% Similarity=0.391 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCCccc-C-HHHHHHHHhcCCcEEeec
Q psy7378 28 LEAIDCLNARSPTGGYLVYSTCSILPEE-N-EAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lvYsTCS~~~eE-N-E~vV~~~l~~~~~~l~~~ 74 (90)
.+++..+....+|..+.||+||...-.= + +.+++.+-++.++.++++
T Consensus 101 ~~aI~~~~~~~~P~~I~V~tTC~~elIGDDi~~v~~~~~~~~~~pvi~v 149 (917)
T PRK14477 101 YRAILELAERYQPKAVFVYATCVTALTGDDVEAVCKAAAEKVGIPVIPV 149 (917)
T ss_pred HHHHHHHHHhcCCCEEEEECCchHHHhccCHHHHHHHHHHhhCCcEEEE
Confidence 3455555666699999999999865432 2 445555444456666665
No 102
>COG2710 NifD Nitrogenase molybdenum-iron protein, alpha and beta chains [Energy production and conversion]
Probab=66.58 E-value=21 Score=28.79 Aligned_cols=50 Identities=28% Similarity=0.345 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCCcccC--HHHHHHHHhcCC-cEEeecC
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCSILPEEN--EAVVNYALRKRD-VKLVPTG 75 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS~~~eEN--E~vV~~~l~~~~-~~l~~~~ 75 (90)
+++.++..+...-+|--+-||+||...-.-. +.+++++-.+++ +.+.++.
T Consensus 97 ~l~~~i~~i~~~~~p~~I~V~sTC~~~iIGDDi~~v~~~~~~~~~~~~vi~v~ 149 (456)
T COG2710 97 KLEAAINEIEAYFNPKAIFVYSTCATEIIGDDIEAVVREAEEEIGKARVIPVN 149 (456)
T ss_pred HHHHHHHHHHhhcCCcEEEEEccccchhccCCHHHHHHHHHHhcCCCeEEEee
Confidence 3444555555555788899999998875443 555555555565 7777763
No 103
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=66.53 E-value=5.1 Score=30.00 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=19.6
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCCcccCHH
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSILPEENEA 58 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~~~eENE~ 58 (90)
.||+.+.+.|||||+++ ++.+.+-++..
T Consensus 137 ~aL~E~~RVlKpgG~~~--vle~~~p~~~~ 164 (238)
T COG2226 137 KALKEMYRVLKPGGRLL--VLEFSKPDNPV 164 (238)
T ss_pred HHHHHHHHhhcCCeEEE--EEEcCCCCchh
Confidence 46777889999999554 56666655533
No 104
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=66.36 E-value=8.3 Score=30.48 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=16.4
Q ss_pred HHHHHHhhcCCCCCEEEEEcCC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS 50 (90)
++++.+.+.|||||.++.++-.
T Consensus 350 ~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 350 ALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred HHHHHHHHHcCCCeEEEEEEec
Confidence 3456667788999999987643
No 105
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=66.33 E-value=17 Score=28.63 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=30.1
Q ss_pred HHHHHHHhhcC-CCCCEEEEEcCCCCcccC--HHHHHHHHhcCC-cEEeecC
Q psy7378 28 LEAIDCLNARS-PTGGYLVYSTCSILPEEN--EAVVNYALRKRD-VKLVPTG 75 (90)
Q Consensus 28 ~~al~~~~~~l-kpgG~lvYsTCS~~~eEN--E~vV~~~l~~~~-~~l~~~~ 75 (90)
.++++.+.+.. +|..+.|++||+..-.=. +.+++.+-++++ +.++++.
T Consensus 76 ~~aI~~~~~~~p~p~~i~V~~tc~~~liGdDi~~v~~~~~~~~~~~~vi~v~ 127 (415)
T cd01977 76 KKNIIEAFKEFPDIKRMTVYTTCTTALIGDDIKAVAKEVMEELPDVDIFVCN 127 (415)
T ss_pred HHHHHHHHHhCCCCcEEEEECCCchhhhcCCHHHHHHHHHHhcCCCeEEEEe
Confidence 34455555555 678899999999876522 444555444554 6676653
No 106
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=66.05 E-value=8.2 Score=27.10 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=15.4
Q ss_pred HHHHHHHHhhcCCCCCEEEEEc
Q psy7378 27 ILEAIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsT 48 (90)
+..+++.+.++|||||.+++.+
T Consensus 113 ~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 113 IPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred HHHHHHHHHHHcCCCcEEEEEE
Confidence 3445666777889999966543
No 107
>PRK03612 spermidine synthase; Provisional
Probab=65.88 E-value=14 Score=30.29 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=24.3
Q ss_pred HHHHHhhcCCCCCEEEEEcCCCCcccCHHHH---HHHHhcCCcEE
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSILPEENEAVV---NYALRKRDVKL 71 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~~~eENE~vV---~~~l~~~~~~l 71 (90)
.++.+.+.|||||.++-.++|.... .+.. ...+++.++..
T Consensus 397 f~~~~~~~L~pgG~lv~~~~~~~~~--~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 397 FYRLLKRRLAPDGLLVVQSTSPYFA--PKAFWSIEATLEAAGLAT 439 (521)
T ss_pred HHHHHHHhcCCCeEEEEecCCcccc--hHHHHHHHHHHHHcCCEE
Confidence 4455667789999999877765432 3333 33344445643
No 108
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=65.65 E-value=7.2 Score=28.79 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=15.3
Q ss_pred HHHHHHhhcCCCCCEEEEEc
Q psy7378 29 EAIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsT 48 (90)
.+++.+.++|||||.++.+.
T Consensus 137 ~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 137 KLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred HHHHHHHHHcCCCcEEEEEE
Confidence 35566677889999999764
No 109
>PLN02244 tocopherol O-methyltransferase
Probab=65.40 E-value=6.8 Score=30.06 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=16.1
Q ss_pred HHHHHhhcCCCCCEEEEEcCC
Q psy7378 30 AIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS 50 (90)
+++.+.+.|||||.++.+++.
T Consensus 205 ~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 205 FVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred HHHHHHHHcCCCcEEEEEEec
Confidence 455566778999999988753
No 110
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=65.39 E-value=16 Score=26.95 Aligned_cols=52 Identities=21% Similarity=0.219 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC--CcEEeec
Q psy7378 20 GKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR--DVKLVPT 74 (90)
Q Consensus 20 ~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~--~~~l~~~ 74 (90)
+.+|..|...|++.+...|+|||..| |..+.-++++.+-+.++++ .++...+
T Consensus 131 h~r~~~L~~~a~~~a~~vL~~~G~fv---~K~fqg~~~~~~l~~~~~~F~~v~~~KP 184 (205)
T COG0293 131 HARSMYLCELALEFALEVLKPGGSFV---AKVFQGEDFEDLLKALRRLFRKVKIFKP 184 (205)
T ss_pred HHHHHHHHHHHHHHHHHeeCCCCeEE---EEEEeCCCHHHHHHHHHHhhceeEEecC
Confidence 34566677889999999999999986 4567777777777766644 3555444
No 111
>KOG1270|consensus
Probab=65.36 E-value=6 Score=30.66 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=16.7
Q ss_pred HHHHHhhcCCCCCEEEEEcC
Q psy7378 30 AIDCLNARSPTGGYLVYSTC 49 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTC 49 (90)
.++.++++|||||+|+-+|=
T Consensus 177 ~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 177 FLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHHHHHHHhCCCCceEeeeh
Confidence 46777888999999999873
No 112
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=65.10 E-value=8.3 Score=27.04 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=14.6
Q ss_pred HHHHHHHhhcCCCCCEEEEEc
Q psy7378 28 LEAIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lvYsT 48 (90)
..+++.+.++|||||.++..+
T Consensus 113 ~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 113 PEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred HHHHHHHHHHhCCCcEEEEEE
Confidence 345666677789999965543
No 113
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=65.03 E-value=14 Score=29.51 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcCCC-CCEEEEEcCCCCcc-cC-HHHHHHHHhcCCcEEeec
Q psy7378 27 ILEAIDCLNARSPT-GGYLVYSTCSILPE-EN-EAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkp-gG~lvYsTCS~~~e-EN-E~vV~~~l~~~~~~l~~~ 74 (90)
|.++++.+.+..+| .-+.|++||+..-. ++ +.+++.+-++.++.++++
T Consensus 105 L~~aI~~~~~~~~p~~~I~V~~tC~~~liGdDi~~v~~~~~~~~~~pvi~v 155 (443)
T TIGR01862 105 LKKLIHEAFTEFPLIKAISVYATCPTGLIGDDIEAVAKEVSKEIGKDVVAV 155 (443)
T ss_pred HHHHHHHHHHhCCccceEEEECCChHHHhccCHHHHHHHHHHhcCCCEEEE
Confidence 34456666677788 89999999997654 22 333444333445555554
No 114
>PRK11630 hypothetical protein; Provisional
Probab=64.82 E-value=9.8 Score=27.48 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=23.0
Q ss_pred hhcCCCCCEEEEEcCCCCc----ccCHHHHHHHHh
Q psy7378 35 NARSPTGGYLVYSTCSILP----EENEAVVNYALR 65 (90)
Q Consensus 35 ~~~lkpgG~lvYsTCS~~~----eENE~vV~~~l~ 65 (90)
++.|+.||.++|.|=|++- ..|++.|+++.+
T Consensus 21 ~~~L~~G~vi~~PTdTvYgL~~d~~n~~Av~~l~~ 55 (206)
T PRK11630 21 VEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICR 55 (206)
T ss_pred HHHHHCCCEEEEeCCChHhhhcCCCCHHHHHHHHH
Confidence 3445889999999977643 477888888743
No 115
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=64.04 E-value=19 Score=29.05 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=28.1
Q ss_pred HHHHHHHHhhcC-CCCCEEEEEcCCCCccc-C-HHHHHHHHhcC-CcEEeec
Q psy7378 27 ILEAIDCLNARS-PTGGYLVYSTCSILPEE-N-EAVVNYALRKR-DVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~l-kpgG~lvYsTCS~~~eE-N-E~vV~~~l~~~-~~~l~~~ 74 (90)
|.++++.+.+.. +|-.+.||+||...-.= + +.+++.+-+++ ++.+.++
T Consensus 114 L~~aI~~~~~~~~~p~~I~V~tTC~~elIGDDi~~v~~~~~~~~~~~~vi~v 165 (461)
T TIGR01860 114 LEKSIHEAFDEFPDIKRMIVYTTCPTALIGDDIKAVAKKVQKELPDVDIFTV 165 (461)
T ss_pred HHHHHHHHHHhCCCCCEEEEEccCchhhhcCCHHHHHHHHHHhcCCCcEEEE
Confidence 334455555555 37789999999854432 2 44445544445 5666554
No 116
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=63.83 E-value=26 Score=27.81 Aligned_cols=47 Identities=21% Similarity=0.123 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCCcccC--HHHHHHHHhcC----CcEEeec
Q psy7378 28 LEAIDCLNARSPTGGYLVYSTCSILPEEN--EAVVNYALRKR----DVKLVPT 74 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lvYsTCS~~~eEN--E~vV~~~l~~~----~~~l~~~ 74 (90)
.++++.+.+..+|.-+.||+||...-.=. +.+++.+-+++ +..+.++
T Consensus 70 ~~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~~vi~v 122 (417)
T cd01966 70 EEALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVPVVYV 122 (417)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcccccccCHHHHHHHHHhhccccCCCeEEEe
Confidence 34455555556899999999998765432 45555544442 4555554
No 117
>PRK10634 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional
Probab=63.81 E-value=10 Score=26.98 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=22.8
Q ss_pred HhhcCCCCCEEEEEcCCCC----cccCHHHHHHHHh
Q psy7378 34 LNARSPTGGYLVYSTCSIL----PEENEAVVNYALR 65 (90)
Q Consensus 34 ~~~~lkpgG~lvYsTCS~~----~eENE~vV~~~l~ 65 (90)
++..|+.||.++|.|=|++ ...|++-|+++.+
T Consensus 13 a~~~L~~G~vv~~PTdTvYgL~~~~~n~~Av~ri~~ 48 (190)
T PRK10634 13 AVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLE 48 (190)
T ss_pred HHHHHHCCCEEEEeCCchhhhhcCCCCHHHHHHHHH
Confidence 3445689999999997764 3467777777653
No 118
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=63.73 E-value=8.7 Score=26.53 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=15.3
Q ss_pred HHHHHHhhcCCCCCEEEEEc
Q psy7378 29 EAIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsT 48 (90)
..++.+.+.|||||.++.++
T Consensus 116 ~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 116 QALSELARVLKPGGLLAFST 135 (240)
T ss_pred HHHHHHHHHcCCCcEEEEEe
Confidence 34566677789999999864
No 119
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=63.47 E-value=5.1 Score=31.22 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC
Q psy7378 22 TSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR 67 (90)
Q Consensus 22 ~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~ 67 (90)
-..+-|+.+|..+..+|+|||+|+-. |++.-|.. +|+++.++.
T Consensus 215 ~EL~~L~~~L~~a~~~L~~gGrl~VI--SFHSLEDR-iVK~~f~~~ 257 (310)
T PF01795_consen 215 DELEELERGLEAAPDLLKPGGRLVVI--SFHSLEDR-IVKQFFREL 257 (310)
T ss_dssp THHHHHHHHHHHHHHHEEEEEEEEEE--ESSHHHHH-HHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHhcCCcEEEEE--EecchhhH-HHHHHHHHh
Confidence 33455677888888999999999864 68888864 557777655
No 120
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=62.78 E-value=9.7 Score=29.02 Aligned_cols=44 Identities=9% Similarity=0.006 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEee
Q psy7378 25 IVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVP 73 (90)
Q Consensus 25 ~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~ 73 (90)
++...+++.+.++|+|||.+++-+= . +...+...+...++....
T Consensus 240 ~~~~~i~~~a~~~L~pgG~l~~E~g---~--~~~~~~~~~~~~~~~~~~ 283 (307)
T PRK11805 240 DLVRRILAEAPDYLTEDGVLVVEVG---N--SRVHLEEAYPDVPFTWLE 283 (307)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEC---c--CHHHHHHHHhhCCCEEEE
Confidence 4556677778888999999987321 1 233466666655554433
No 121
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=62.68 E-value=20 Score=29.24 Aligned_cols=41 Identities=7% Similarity=0.040 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCc
Q psy7378 25 IVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDV 69 (90)
Q Consensus 25 ~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~ 69 (90)
+.+.++++.+.++|+|||.++.. +... ..+.|..++.+.++
T Consensus 246 ~~~~~il~~a~~~L~~gG~l~lE-ig~~---q~~~v~~~~~~~g~ 286 (506)
T PRK01544 246 QAYFIIAENAKQFLKPNGKIILE-IGFK---QEEAVTQIFLDHGY 286 (506)
T ss_pred HHHHHHHHHHHHhccCCCEEEEE-ECCc---hHHHHHHHHHhcCC
Confidence 45667778888899999999874 3433 23345555555544
No 122
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=62.60 E-value=8.7 Score=27.88 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=15.9
Q ss_pred HHHHHHhhcCCCCCEEEEEcC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTC 49 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTC 49 (90)
.+++.+.+.|||||.++.+.-
T Consensus 145 ~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 145 ALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHHHHHHhcCCCCEEEEEEe
Confidence 345556677899999999873
No 123
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=62.34 E-value=5.5 Score=24.76 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhcCCCCCEEEE
Q psy7378 26 VILEAIDCLNARSPTGGYLVY 46 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvY 46 (90)
-..+.++.+++.|+|||+||.
T Consensus 83 ~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 83 AVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp HHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEE
Confidence 344567888999999999986
No 124
>PF03161 LAGLIDADG_2: LAGLIDADG DNA endonuclease family; InterPro: IPR004860 This is a family of site-specific DNA endonucleases encoded by DNA mobile elements. Similar to the homing endonuclease LAGLIDADG/HNH domain (IPR001982 from INTERPRO), the members of this family are also LAGLIDADG endonucleases. ; GO: 0004519 endonuclease activity; PDB: 3OOR_A 3OOL_A 3C0W_A 1R7M_A 3C0X_A.
Probab=62.15 E-value=4.8 Score=28.08 Aligned_cols=33 Identities=27% Similarity=0.159 Sum_probs=19.8
Q ss_pred CCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEE
Q psy7378 39 PTGGYLVYSTCSILPEENEAVVNYALRKRDVKL 71 (90)
Q Consensus 39 kpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l 71 (90)
..++.++.+|.|++.+|.+..++-+..+++++.
T Consensus 122 ~~~~g~~l~T~sFt~~Ev~~L~~~L~~kf~l~~ 154 (178)
T PF03161_consen 122 KKGRGIRLCTNSFTKEEVERLQNILKTKFGLKC 154 (178)
T ss_dssp -S---EEE--TTS-HHHHHHHHHHHHHHH---E
T ss_pred CCCCcEEEEECCCCHHHHHHHHHHHHHHhCeEE
Confidence 567889999999999999999888777776543
No 125
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=61.75 E-value=18 Score=29.64 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=27.5
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCCccc-C-HHHHHHHHhcCCcEEeec
Q psy7378 28 LEAIDCLNARSPTGGYLVYSTCSILPEE-N-EAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lvYsTCS~~~eE-N-E~vV~~~l~~~~~~l~~~ 74 (90)
.+++..+.+..+|.-++|++||+..-.- + +.+|+.+-.+.++.++++
T Consensus 74 ~~~I~~~~~~~~P~~I~V~tTC~~eiIGDDi~~v~~~~~~~~~~pVi~v 122 (513)
T CHL00076 74 VDNITRKDKEERPDLIVLTPTCTSSILQEDLQNFVDRASIESDSDVILA 122 (513)
T ss_pred HHHHHHHHHhcCCCEEEECCCCchhhhhcCHHHHHHHhhcccCCCEEEe
Confidence 3445556677799999999999865432 2 333333322235555554
No 126
>COG0009 SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
Probab=60.89 E-value=14 Score=27.23 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=24.5
Q ss_pred HHhhcCCCCCEEEEEcCCCC----cccCHHHHHHHHh
Q psy7378 33 CLNARSPTGGYLVYSTCSIL----PEENEAVVNYALR 65 (90)
Q Consensus 33 ~~~~~lkpgG~lvYsTCS~~----~eENE~vV~~~l~ 65 (90)
.+...|+.||.++|-|=|++ ...|++.|+++.+
T Consensus 18 ~a~~~l~~G~vVa~PTeTVYGLg~~~~~~~Av~~i~~ 54 (211)
T COG0009 18 KAVEALRKGGVVAYPTDTVYGLGADATNEEAVERLYE 54 (211)
T ss_pred HHHHHHHcCCEEEEEccchheeecCCCCHHHHHHHHH
Confidence 33444578999999998875 5677888888764
No 127
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=60.86 E-value=5.8 Score=29.29 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=16.6
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcC
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTC 49 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTC 49 (90)
|..+++.+...|+|||.||..+=
T Consensus 125 L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 125 LRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEEe
Confidence 33455666677899999999653
No 128
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=60.71 E-value=3.5 Score=30.29 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=20.8
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHh
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALR 65 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~ 65 (90)
++++.+.+.|||||+++..- +..-+|. .+..+..
T Consensus 134 ~~l~E~~RVLkPGG~l~ile--~~~p~~~-~~~~~~~ 167 (233)
T PF01209_consen 134 RALREMYRVLKPGGRLVILE--FSKPRNP-LLRALYK 167 (233)
T ss_dssp HHHHHHHHHEEEEEEEEEEE--EEB-SSH-HHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEEee--ccCCCCc-hhhceee
Confidence 35667778889999998644 4444453 4444433
No 129
>PRK13699 putative methylase; Provisional
Probab=60.69 E-value=32 Score=25.11 Aligned_cols=45 Identities=11% Similarity=-0.048 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEee
Q psy7378 25 IVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVP 73 (90)
Q Consensus 25 ~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~ 73 (90)
+.+...++.+.+.|||||.++ +-|+... ...+...+++.+|.+..
T Consensus 49 ew~~~~l~E~~RVLKpgg~l~-if~~~~~---~~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 49 EWLQPACNEMYRVLKKDALMV-SFYGWNR---VDRFMAAWKNAGFSVVG 93 (227)
T ss_pred HHHHHHHHHHHHHcCCCCEEE-EEecccc---HHHHHHHHHHCCCEEee
Confidence 456677888889999987664 4566542 23333445556776544
No 130
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=60.27 E-value=25 Score=28.33 Aligned_cols=48 Identities=13% Similarity=0.055 Sum_probs=28.3
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCC-CcccC-HHHHHHHHhcC----CcEEeec
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSI-LPEEN-EAVVNYALRKR----DVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~-~~eEN-E~vV~~~l~~~----~~~l~~~ 74 (90)
|.++++.+....+|.-+.||+||.. .--++ +.+++.+-++. +..+..+
T Consensus 80 L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p~~~~~pvi~v 133 (455)
T PRK14476 80 VEEAILNICKKAKPKIIGLCTTGLTETRGDDVAGALKEIRARHPELADTPIVYV 133 (455)
T ss_pred HHHHHHHHHHhhCCCEEEEeCcchHhhhhccHHHHHHHHHhhccccCCCeEEEe
Confidence 3445555555568999999999953 33344 44555544343 3445444
No 131
>KOG1975|consensus
Probab=59.89 E-value=8.6 Score=30.92 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=16.0
Q ss_pred HHHHHHhhcCCCCCEEEEE
Q psy7378 29 EAIDCLNARSPTGGYLVYS 47 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYs 47 (90)
.+|.+++.+|||||..|-.
T Consensus 218 ~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 218 IALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred HHHHHHHhhcCCCcEEEEe
Confidence 3678889999999999873
No 132
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=59.83 E-value=8.9 Score=30.59 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCC
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCSIL 52 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS~~ 52 (90)
-|.++++.+.+.-+|.-+.||+||+..
T Consensus 74 ~L~~~i~~~~~~~~P~~I~V~tTC~se 100 (422)
T TIGR02015 74 DVRCSVHKLADPASYDAIVVINLCVPT 100 (422)
T ss_pred HHHHHHHHHhhcCCCCEEEEECCCcHH
Confidence 345566776666689999999999874
No 133
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=59.75 E-value=30 Score=28.18 Aligned_cols=46 Identities=22% Similarity=0.187 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEee
Q psy7378 24 LIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVP 73 (90)
Q Consensus 24 ~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~ 73 (90)
.+.++++++.+.+.|+|||.+++-. .. ...+.|..++.+.++....
T Consensus 357 L~~yr~Ii~~a~~~LkpgG~lilEi---G~-~Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 357 LSCIRTLAQGAPDRLAEGGFLLLEH---GF-DQGAAVRGVLAENGFSGVE 402 (423)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEE---Cc-cHHHHHHHHHHHCCCcEEE
Confidence 4566788888889999999987633 22 2234556666666654433
No 134
>KOG1271|consensus
Probab=59.45 E-value=9.8 Score=28.48 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=22.6
Q ss_pred HHHhhcCCCCCEEEEEcCCCCcccCHHHH
Q psy7378 32 DCLNARSPTGGYLVYSTCSILPEENEAVV 60 (90)
Q Consensus 32 ~~~~~~lkpgG~lvYsTCS~~~eENE~vV 60 (90)
+.+-++|+|||+.|...|-++..|=.+.+
T Consensus 165 d~v~~ll~~~gifvItSCN~T~dELv~~f 193 (227)
T KOG1271|consen 165 DSVEKLLSPGGIFVITSCNFTKDELVEEF 193 (227)
T ss_pred hhHhhccCCCcEEEEEecCccHHHHHHHH
Confidence 44556789999999999999997654444
No 135
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=59.13 E-value=35 Score=26.88 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCCccc-C-HHHHHHHHhc----CCcEEeec
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSILPEE-N-EAVVNYALRK----RDVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~~eE-N-E~vV~~~l~~----~~~~l~~~ 74 (90)
|.++++.+.+..+|.-+.|++||...-.= + +.+++++-++ .++.+..+
T Consensus 69 L~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v 122 (428)
T cd01965 69 LIEALKNLLSRYKPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYA 122 (428)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEe
Confidence 34455556666689999999999876543 3 5555555443 25666665
No 136
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=59.08 E-value=3.9 Score=27.50 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=12.9
Q ss_pred HHHHHHhhcCCCCCEEE
Q psy7378 29 EAIDCLNARSPTGGYLV 45 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lv 45 (90)
..++.+..+|+|||.+|
T Consensus 25 ~~f~~~~~~L~pGG~li 41 (110)
T PF06859_consen 25 RFFRRIYSLLRPGGILI 41 (110)
T ss_dssp HHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHhhCCCCEEE
Confidence 34555667789999998
No 137
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=58.91 E-value=9 Score=29.94 Aligned_cols=16 Identities=50% Similarity=0.910 Sum_probs=14.4
Q ss_pred CCCEEEEEcCCCCccc
Q psy7378 40 TGGYLVYSTCSILPEE 55 (90)
Q Consensus 40 pgG~lvYsTCS~~~eE 55 (90)
+|+.+|-.+|++.|+|
T Consensus 25 ~G~kvvg~~c~y~P~E 40 (377)
T TIGR03190 25 TGGQVVATMCTYTPEE 40 (377)
T ss_pred CCCEEEEEeCCcChHH
Confidence 6999999999999943
No 138
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=58.62 E-value=11 Score=26.41 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=13.9
Q ss_pred HHHHHhhcCCCCCEEEEEc
Q psy7378 30 AIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsT 48 (90)
+++.+.+.|+|||.++..+
T Consensus 133 ~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 133 VLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred HHHHHHHHcCcCeEEEEEE
Confidence 4555667789999998653
No 139
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=58.58 E-value=11 Score=27.25 Aligned_cols=18 Identities=6% Similarity=0.097 Sum_probs=13.5
Q ss_pred HHHHHhhcCCCCCEEEEE
Q psy7378 30 AIDCLNARSPTGGYLVYS 47 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYs 47 (90)
+++.+.+.|||||.++..
T Consensus 108 ~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 108 LLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred HHHHHHHhCCCCcEEEEE
Confidence 445556778999999875
No 140
>PF02977 CarbpepA_inh: Carboxypeptidase A inhibitor; InterPro: IPR004231 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family is represented by the well-characterised metallocarboxypeptidase A inhibitor (MCPI) from potatoes, which belongs to the MEROPS inhibitor family I37, clan IE. It inhibits metallopeptidases belonging to MEROPS peptidase family M14, carboxypeptidase A. In Russet Burbank potatoes, it is a mixture of approximately equal amounts of two polypeptide chains containing 38 or 39 amino acid residues. The chains differ in their amino terminal sequence only [] and are resistant to fragmentation by proteases []. The structure of the complex between bovine carboxypeptidase A and the 39-amino-acid carboxypeptidase A inhibitor from potatoes has been determined at 2.5-A resolution []. The potato inhibitor is synthesised as a precursor, having a 29 residue N-terminal signal peptide, a 27 residue pro-peptide, the 39 residue mature inhibitor region and a 7 residue C-terminal extension. The 7 residue C-terminal extension is involved in inhibitor inactivation and may be required for targeting to the vacuole where the mature active inhibitor accumulates []. The N-terminal region and the mature inhibitor are weakly related to other solananaceous proteins found in this entry, from potato, tomato and henbane, which have been incorrectly described as metallocarboxipeptidase inhibitors [].; GO: 0008191 metalloendopeptidase inhibitor activity; PDB: 4CPA_I 1H20_A 2HLG_A.
Probab=58.00 E-value=3.6 Score=23.77 Aligned_cols=19 Identities=47% Similarity=0.490 Sum_probs=11.7
Q ss_pred hhcCCCCCEEEEEcCCCCc
Q psy7378 35 NARSPTGGYLVYSTCSILP 53 (90)
Q Consensus 35 ~~~lkpgG~lvYsTCS~~~ 53 (90)
+++-++.|-.+|++||+.|
T Consensus 28 ~k~~~t~~g~~~~~~~~~p 46 (46)
T PF02977_consen 28 WKLKKTCGGYVGSACSILP 46 (46)
T ss_dssp -CCCEBCC--EEEEEES--
T ss_pred HhcccCCCCcccceeeccC
Confidence 3455779999999999865
No 141
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=57.66 E-value=3.2 Score=30.06 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEc
Q psy7378 22 TSLIVILEAIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 22 ~Q~~Ll~~al~~~~~~lkpgG~lvYsT 48 (90)
++++++.++++.....++|||..++-|
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 445566667777777889999999943
No 142
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=57.35 E-value=15 Score=24.45 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHh
Q psy7378 14 RALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALR 65 (90)
Q Consensus 14 ~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~ 65 (90)
+-+..+...|.+-|.++.+.+++.++.||+|.|.=+-=.-.--++.+.++..
T Consensus 8 ~~l~~v~~~~~~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~ 59 (138)
T PF13580_consen 8 ELLEAVEETQAEAIEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGG 59 (138)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhc
Confidence 4455666668888889999999999999999998776444333444455443
No 143
>KOG4300|consensus
Probab=57.25 E-value=11 Score=28.75 Aligned_cols=18 Identities=11% Similarity=0.349 Sum_probs=14.5
Q ss_pred HHHHHhhcCCCCCEEEEE
Q psy7378 30 AIDCLNARSPTGGYLVYS 47 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYs 47 (90)
+|....++|+|||++++.
T Consensus 164 ~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 164 QLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred HHHHHHHhcCCCcEEEEE
Confidence 456667888999999984
No 144
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=57.20 E-value=8.5 Score=29.99 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=17.2
Q ss_pred HHHHHHHHhhcCCCCCEEEEE
Q psy7378 27 ILEAIDCLNARSPTGGYLVYS 47 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYs 47 (90)
+..|++.+..-++.||+|+|.
T Consensus 46 Ia~Av~~~~~~l~~GGRLiY~ 66 (298)
T COG2103 46 IAAAVDIIAAALKQGGRLIYI 66 (298)
T ss_pred HHHHHHHHHHHHHcCCeEEEE
Confidence 456777777888999999995
No 145
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=57.15 E-value=16 Score=29.87 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=16.8
Q ss_pred CCEEEEEcCCCCcccCHHHHHHHHh
Q psy7378 41 GGYLVYSTCSILPEENEAVVNYALR 65 (90)
Q Consensus 41 gG~lvYsTCS~~~eENE~vV~~~l~ 65 (90)
+-.=|||.||.+| .||+..++
T Consensus 15 ~~~gI~sVCsahp----~VieAAl~ 35 (426)
T PRK15458 15 KTNGIYAVCSAHP----LVLEAAIR 35 (426)
T ss_pred CCceEEEecCCCH----HHHHHHHH
Confidence 4457999999999 88888654
No 146
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=56.88 E-value=9.6 Score=28.28 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=15.5
Q ss_pred HHHHHHhhcCCCCCEEEEEcC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTC 49 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTC 49 (90)
++++.+.+.|+|||.|+-...
T Consensus 223 ~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 223 KLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred HHHHHHHHHhCCCeEEEEECc
Confidence 455556677799999998654
No 147
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=56.62 E-value=15 Score=20.78 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=14.1
Q ss_pred CCCcccCChh--hhHHHHHHHHHHHHHH
Q psy7378 1 MSNWYPLDST--LALRALSTIGKTSLIV 26 (90)
Q Consensus 1 ~~~w~~~~~~--~~~~~l~~l~~~Q~~L 26 (90)
||-.+|-.++ +..+++-+-+..|++-
T Consensus 12 mSAyYP~ESELskr~rrLIRaa~k~lea 39 (44)
T PF08134_consen 12 MSAYYPTESELSKRIRRLIRAARKQLEA 39 (44)
T ss_pred eeeecCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5677886665 3334444444455443
No 148
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=56.55 E-value=13 Score=28.48 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=15.0
Q ss_pred HHHHHhhcCCCCCEEEEEcC
Q psy7378 30 AIDCLNARSPTGGYLVYSTC 49 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTC 49 (90)
.|+.+.+.|+|||.+|.+|-
T Consensus 208 ~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 208 HLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred HHHHHHHhcCCCcEEEEEEE
Confidence 45556677899999998753
No 149
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=56.41 E-value=27 Score=25.97 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCC
Q psy7378 20 GKTSLIVILEAIDCLNARSPTGGYLVYSTCSIL 52 (90)
Q Consensus 20 ~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~ 52 (90)
...|..-|.++++.+.+.++.||+|+|.=|--.
T Consensus 28 v~~~l~~I~~av~~~~~~l~~ggrl~~~GaGtS 60 (257)
T cd05007 28 VEAALPQIARAVDAAAERLRAGGRLIYVGAGTS 60 (257)
T ss_pred HHHhHHHHHHHHHHHHHHHHcCCEEEEEcCcHH
Confidence 444556678888888999999999999876543
No 150
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=56.21 E-value=19 Score=26.80 Aligned_cols=27 Identities=22% Similarity=0.108 Sum_probs=17.5
Q ss_pred HHHHHhhcCCCCCEEEEEcCCCCcccC
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSILPEEN 56 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~~~eEN 56 (90)
+|+.+.+.|||||+++-.-..+...++
T Consensus 236 il~~~~~~L~pgG~l~i~d~~~~~~~~ 262 (306)
T TIGR02716 236 MCKKAFDAMRSGGRLLILDMVIDDPEN 262 (306)
T ss_pred HHHHHHHhcCCCCEEEEEEeccCCCCC
Confidence 455555667999999877654444343
No 151
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=56.01 E-value=76 Score=24.93 Aligned_cols=59 Identities=19% Similarity=0.328 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHH--hhcCC-C-CCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeecCCCCCC
Q psy7378 20 GKTSLIVILEAIDCL--NARSP-T-GGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFGT 80 (90)
Q Consensus 20 ~~~Q~~Ll~~al~~~--~~~lk-p-gG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~~~~~g~ 80 (90)
-...++++.++|... +...+ | |+..+|..++-. .-.++.+.++|++.++-+.|- ..||.
T Consensus 298 ~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~-~d~~~f~~~Ll~~~gV~v~PG-~~Fg~ 360 (393)
T COG0436 298 YRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPEL-LDSEEFAKKLLEEAGVAVVPG-SGFGE 360 (393)
T ss_pred HHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCC-CCHHHHHHHHHHhCCEEEecc-cccCC
Confidence 344577888888755 67778 7 888889888877 455778888888888776653 33454
No 152
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=55.92 E-value=34 Score=26.81 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=14.0
Q ss_pred HHHHHhhcCCCCCEEEEE
Q psy7378 30 AIDCLNARSPTGGYLVYS 47 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYs 47 (90)
+++.+.+.|||||.++..
T Consensus 197 ~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 197 GIKEAYRVLKIGGKACLI 214 (340)
T ss_pred HHHHHHHhcCCCcEEEEE
Confidence 456667778999998874
No 153
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=55.88 E-value=17 Score=29.63 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=16.6
Q ss_pred CCEEEEEcCCCCcccCHHHHHHHHh
Q psy7378 41 GGYLVYSTCSILPEENEAVVNYALR 65 (90)
Q Consensus 41 gG~lvYsTCS~~~eENE~vV~~~l~ 65 (90)
+-.=|||.||.+| .||+-.++
T Consensus 11 ~~~gI~sVCsahp----~VieAAl~ 31 (420)
T TIGR02810 11 EPRGIYSVCSAHP----LVLEAAIR 31 (420)
T ss_pred CCCeEEEECCCCH----HHHHHHHH
Confidence 3456999999999 88888654
No 154
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=55.76 E-value=12 Score=26.66 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=15.1
Q ss_pred HHHHHHhhcCCCCCEEEEEc
Q psy7378 29 EAIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsT 48 (90)
.+++.+.+.|||||.++.+.
T Consensus 142 ~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 142 ALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred HHHHHHHHhcCCCeEEEEee
Confidence 34566667789999999874
No 155
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=55.17 E-value=24 Score=28.79 Aligned_cols=48 Identities=15% Similarity=0.251 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCC-CcccC-HHHHHHHHhcCCcEEeec
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCSI-LPEEN-EAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS~-~~eEN-E~vV~~~l~~~~~~l~~~ 74 (90)
-|.++++.+.+..+|.-++|++||+. .--++ +.+++.+ +..++.++++
T Consensus 72 ~L~~aI~~~~~~~~P~~I~V~sTC~selIGdDi~~~~~~~-~~~~~pvi~v 121 (511)
T TIGR01278 72 RLVDTVRRVDDRFKPDLIVVTPSCTSSLLQEDLGNLAAAA-GLDKSKVIVA 121 (511)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHh-ccCCCcEEEe
Confidence 44556666666678999999999943 34455 3333333 2224555554
No 156
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=53.69 E-value=15 Score=26.55 Aligned_cols=27 Identities=19% Similarity=0.050 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCC
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCSIL 52 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS~~ 52 (90)
+-.+.++.+.++|||||++++.|=...
T Consensus 133 ~R~~~~~~l~~lL~pgG~~~l~~~~~~ 159 (218)
T PRK13255 133 MRERYVQQLAALLPAGCRGLLVTLDYP 159 (218)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEEEeC
Confidence 334556667788899997555444343
No 157
>PLN02672 methionine S-methyltransferase
Probab=52.46 E-value=23 Score=32.02 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEE
Q psy7378 24 LIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKL 71 (90)
Q Consensus 24 ~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l 71 (90)
.++.++++..+..+|+|||.++. -+.....+.+.+.++++.+++.
T Consensus 254 L~~yr~i~~~a~~~L~pgG~l~l---EiG~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 254 LGLIARAVEEGISVIKPMGIMIF---NMGGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred HHHHHHHHHHHHHhccCCCEEEE---EECccHHHHHHHHHHHHCCCCe
Confidence 45777888889999999998875 3444444555545666555444
No 158
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=52.46 E-value=48 Score=25.71 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=34.8
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCCccc------------CHHHHHHHHhcCCcEEeec
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSILPEE------------NEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~~eE------------NE~vV~~~l~~~~~~l~~~ 74 (90)
|+.++-.++.+|+|||.+.+|.-+...+- .|.-|...++..++++..+
T Consensus 204 Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 204 LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEe
Confidence 34456667788999999999998877653 2455667777777766554
No 159
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=52.29 E-value=31 Score=30.36 Aligned_cols=48 Identities=13% Similarity=-0.028 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCCcccC--HHHHHHHHhcC----CcEEeec
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSILPEEN--EAVVNYALRKR----DVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~~eEN--E~vV~~~l~~~----~~~l~~~ 74 (90)
|.+++..+....+|.-+.|++||...-.=. +.+|+.+-+++ +..++++
T Consensus 559 L~~~I~~~~~~~~p~~I~V~tTc~~eiIGDDi~~vi~~~~~~~~~~~~~pvi~v 612 (917)
T PRK14477 559 LKQGILRVIEKFKPKVIGVMTTGLTETMGDDVRSAIVQFREEHPELDDVPVVWA 612 (917)
T ss_pred HHHHHHHHHHhcCCCEEEEECCchHhhhhcCHHHHHHHHHhhccccCCCeEEEe
Confidence 445566666677999999999998654322 44455544332 4555554
No 160
>PRK01581 speE spermidine synthase; Validated
Probab=51.50 E-value=34 Score=27.49 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=15.9
Q ss_pred HHHHHhhcCCCCCEEEEEcCCC
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSI 51 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~ 51 (90)
.++.+.+.|+|||++|.-.-|.
T Consensus 250 Fy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 250 LFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred HHHHHHHhcCCCcEEEEecCCh
Confidence 4556667789999988765444
No 161
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=51.26 E-value=39 Score=24.21 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=13.8
Q ss_pred HHHHHhhcCCCCCEEEEEc
Q psy7378 30 AIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsT 48 (90)
+++.+.+.|||||.++-++
T Consensus 112 ~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 112 LFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred HHHHHHHhcCCCcEEEEEC
Confidence 4455566789999998853
No 162
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=51.00 E-value=6.8 Score=25.94 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=20.5
Q ss_pred HHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHH
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSILPEENEAVVNY 62 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~ 62 (90)
+++.+.++|++||.++.+.+. ...|.++.+..
T Consensus 92 ~l~~~~~~lk~~G~~i~~~~~-~~~~~~~~~~~ 123 (152)
T PF13847_consen 92 VLKNIIRLLKPGGILIISDPN-HNDELPEQLEE 123 (152)
T ss_dssp HHHHHHHHEEEEEEEEEEEEE-HSHHHHHHHHH
T ss_pred HHHHHHHHcCCCcEEEEEECC-hHHHHHHHHHH
Confidence 345556777999999988887 33333344433
No 163
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=50.81 E-value=13 Score=27.57 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=17.9
Q ss_pred HHHHHhhcCCCCCEEEEEcCCCC
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSIL 52 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~~ 52 (90)
.|+.+.++|+|||.||-=.--+.
T Consensus 148 ~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 148 YLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HHHHHHHHhCCCcEEEEeecccC
Confidence 45666778899999998776666
No 164
>PLN03075 nicotianamine synthase; Provisional
Probab=50.76 E-value=15 Score=28.38 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=14.8
Q ss_pred HHHHHhhcCCCCCEEEEEc
Q psy7378 30 AIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsT 48 (90)
+++.+.+.|+|||.+++-+
T Consensus 215 vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 215 VIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred HHHHHHHhcCCCcEEEEec
Confidence 4455566779999999987
No 165
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=50.46 E-value=30 Score=28.31 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=12.1
Q ss_pred CCEEEEEcCCCCcccCHHHHHHHHh
Q psy7378 41 GGYLVYSTCSILPEENEAVVNYALR 65 (90)
Q Consensus 41 gG~lvYsTCS~~~eENE~vV~~~l~ 65 (90)
.-.=|||.||.+| .||+..+.
T Consensus 15 ~~~gI~SVCsahp----~VieAAl~ 35 (424)
T PF08013_consen 15 EPVGIYSVCSAHP----LVIEAALE 35 (424)
T ss_dssp --B-EEEE----H----HHHHHHHH
T ss_pred CCCceEEecCCCH----HHHHHHHH
Confidence 4466999999999 89998875
No 166
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=50.06 E-value=18 Score=26.83 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=14.4
Q ss_pred HHHHHHHHhhcCCCCCEEEE
Q psy7378 27 ILEAIDCLNARSPTGGYLVY 46 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvY 46 (90)
+..+++.+.+.|+|||.++.
T Consensus 202 ~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 202 IPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred HHHHHHHHHHhcCCCcEEEE
Confidence 33456666778899999665
No 167
>PRK11524 putative methyltransferase; Provisional
Probab=49.93 E-value=30 Score=25.77 Aligned_cols=27 Identities=19% Similarity=0.033 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEEEcCCC
Q psy7378 24 LIVILEAIDCLNARSPTGGYLVYSTCSI 51 (90)
Q Consensus 24 ~~Ll~~al~~~~~~lkpgG~lvYsTCS~ 51 (90)
.+.+...+..+.++|||||.++.. |+.
T Consensus 56 ~~~l~~~l~~~~rvLK~~G~i~i~-~~~ 82 (284)
T PRK11524 56 IDWLYEWIDECHRVLKKQGTMYIM-NST 82 (284)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEE-cCc
Confidence 345667788888999999998864 544
No 168
>KOG3349|consensus
Probab=49.89 E-value=8.2 Score=27.82 Aligned_cols=15 Identities=53% Similarity=0.826 Sum_probs=12.6
Q ss_pred CCCCEEEEEcCCCCc
Q psy7378 39 PTGGYLVYSTCSILP 53 (90)
Q Consensus 39 kpgG~lvYsTCS~~~ 53 (90)
..-|.|+|+|||-.+
T Consensus 124 ~~egyL~~C~ps~L~ 138 (170)
T KOG3349|consen 124 AEEGYLYYCTPSTLP 138 (170)
T ss_pred HhcCcEEEeeccchH
Confidence 468999999999755
No 169
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=49.58 E-value=22 Score=27.99 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=16.8
Q ss_pred HHHHHHhhcCCCCCEEEEEcCC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS 50 (90)
..++.+.++|||||.++..+-+
T Consensus 248 ~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 248 TYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred HHHHHHHHHcCCCcEEEEEEcc
Confidence 4566677888999999987643
No 170
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=48.61 E-value=9.4 Score=29.68 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=17.6
Q ss_pred HHHHHHHhhcCCCCCEEEEEcC
Q psy7378 28 LEAIDCLNARSPTGGYLVYSTC 49 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lvYsTC 49 (90)
+..|.+++..|+|||.+|-.|-
T Consensus 166 r~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 166 RQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEec
Confidence 3467778889999999998654
No 171
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=48.36 E-value=30 Score=25.39 Aligned_cols=35 Identities=6% Similarity=-0.049 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCC
Q psy7378 16 LSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 16 l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS 50 (90)
.++--++|.+|=.++.+++...|+|.|..|+..++
T Consensus 125 ~arRlQvQERLT~qIa~~l~~~l~p~GVaV~ieA~ 159 (201)
T PRK12606 125 FARRLQIQENLTRQIATAVVTVTQARGAAVVIEAE 159 (201)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhCCCcEEEEEEEE
Confidence 33445678889999999999999999999998764
No 172
>KOG1663|consensus
Probab=48.33 E-value=13 Score=28.10 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=13.1
Q ss_pred HHHhhcCCCCCEEEEEc
Q psy7378 32 DCLNARSPTGGYLVYST 48 (90)
Q Consensus 32 ~~~~~~lkpgG~lvYsT 48 (90)
+.+.++||+||+|++=.
T Consensus 167 e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 167 ERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHHhhcccccEEEEec
Confidence 44557789999999955
No 173
>KOG2899|consensus
Probab=48.29 E-value=17 Score=28.22 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=19.3
Q ss_pred HHHHHhhcCCCCCEEEEEcCCCCcccCHHHHH
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSILPEENEAVVN 61 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~ 61 (90)
-|..++.+|.|||+||.=-=.....++..-.-
T Consensus 191 ff~kis~ll~pgGiLvvEPQpWksY~kaar~~ 222 (288)
T KOG2899|consen 191 FFRKISSLLHPGGILVVEPQPWKSYKKAARRS 222 (288)
T ss_pred HHHHHHHhhCcCcEEEEcCCchHHHHHHHHHH
Confidence 35556777899999997444333334433333
No 174
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=47.88 E-value=19 Score=28.87 Aligned_cols=27 Identities=22% Similarity=-0.007 Sum_probs=20.8
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCCcc
Q psy7378 28 LEAIDCLNARSPTGGYLVYSTCSILPE 54 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lvYsTCS~~~e 54 (90)
...++.+.+.|+|||.+...|.+..-.
T Consensus 215 ~~fL~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 215 EDFLNEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred HHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence 345666778889999999999876544
No 175
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=47.80 E-value=34 Score=24.82 Aligned_cols=34 Identities=12% Similarity=0.020 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCC
Q psy7378 17 STIGKTSLIVILEAIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 17 ~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS 50 (90)
++--++|.+|=.++.+++...|+|.|..|...+.
T Consensus 114 arRlQiQERlT~qIa~al~~~l~p~gV~V~ieA~ 147 (188)
T PRK09347 114 ARRPQVQERLTAQIADALQEILGPRGVAVVIEAE 147 (188)
T ss_pred HcCchhHHHHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 3334678889999999999999999999998654
No 176
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=47.08 E-value=1.1e+02 Score=23.22 Aligned_cols=52 Identities=13% Similarity=0.314 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCC-CCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeec
Q psy7378 20 GKTSLIVILEAIDCLNARSPT-GGYLVYSTCSILPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 20 ~~~Q~~Ll~~al~~~~~~lkp-gG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
-+.+++.+.++|+.......| ||..++..+. ....+.++.+++++++.+.+-
T Consensus 302 ~~~~~~~~~~~L~~~~~~~~p~gg~f~~~~~~---~~~~~~~~~l~~~~gV~v~pg 354 (393)
T TIGR03538 302 YREKFAAVLEILGQVLDLELPDAGFYLWPKVP---GDDEAFARALYEEENVTVLPG 354 (393)
T ss_pred HHHHHHHHHHHHHhhCcccCCCeeEEEEEECC---CCHHHHHHHHHHHCCEEEeCC
Confidence 344455555566543333344 8888888876 223455566667778877654
No 177
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=46.63 E-value=20 Score=28.34 Aligned_cols=47 Identities=19% Similarity=0.095 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC-CcEEeec
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR-DVKLVPT 74 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~-~~~l~~~ 74 (90)
=|.++++.+.+.-+|.-+.||+||...-. ++ .++.++++. +..++++
T Consensus 78 ~L~~~i~~~~~~~~p~~I~V~stC~~e~i-Gd-Di~~~~~~~~~~~vv~v 125 (416)
T cd01980 78 DIREAIRKLADPPAYTFIPVISLCVAETA-GV-AEELLPKQIDGVRVILV 125 (416)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCChhhhh-cC-chhhhhcccCCCeEEEe
Confidence 34556666666668999999999987542 22 223333333 4555554
No 178
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=46.51 E-value=25 Score=23.69 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=27.9
Q ss_pred cCCCCCEEEEE----------cCCCCcccCHHHHHHHHhcCCcEEeec
Q psy7378 37 RSPTGGYLVYS----------TCSILPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 37 ~lkpgG~lvYs----------TCS~~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
++-|+|.++|. .|.....|-.+.|+.++.........+
T Consensus 115 lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 162 (171)
T cd02969 115 LFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQT 162 (171)
T ss_pred EECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCcccc
Confidence 45689999998 477777888888888887665444343
No 179
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=46.14 E-value=18 Score=28.65 Aligned_cols=48 Identities=10% Similarity=0.163 Sum_probs=29.4
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCCcc-cC-HHHHHHHHhc---CCcEEeec
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSILPE-EN-EAVVNYALRK---RDVKLVPT 74 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~~e-EN-E~vV~~~l~~---~~~~l~~~ 74 (90)
|.++++.+.+..+|.-+.|++||...-. ++ +.+++++-++ .+..+.++
T Consensus 72 L~~aI~~~~~~~~P~~I~V~ttc~~~iiGdDi~~v~~~~~~~~~~~~~~vi~v 124 (429)
T cd03466 72 LKKGLKNVIEQYNPEVIGIATTCLSETIGEDVPRIIREFREEVDDSEPKIIPA 124 (429)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHhhcCHHHHHHHHhhcccCCCCcEEEE
Confidence 4455666667779999999999986543 22 4444444333 14455554
No 180
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=45.73 E-value=38 Score=24.61 Aligned_cols=35 Identities=11% Similarity=0.032 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCC
Q psy7378 16 LSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 16 l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS 50 (90)
.++--++|.+|=.++.+++...|.|-|..|+..+.
T Consensus 111 ~arRlQiQERLT~qIa~~l~~~l~p~gVaV~ieA~ 145 (188)
T PLN03044 111 YARRLQTQERLTRQIADAIVESVEPLGVMVVVEAA 145 (188)
T ss_pred HhcCcHHHHHHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 33445678889999999999999999999997653
No 181
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=45.17 E-value=49 Score=25.25 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEcCCC
Q psy7378 22 TSLIVILEAIDCLNARSPTGGYLVYSTCSI 51 (90)
Q Consensus 22 ~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~ 51 (90)
.+.+-|.++.+.+.+.++.||+|+|.=|--
T Consensus 39 ~~~~~I~~a~~~~~~~l~~ggrl~~~GaG~ 68 (296)
T PRK12570 39 KVLPQIAQAVDKIVAAFKKGGRLIYMGAGT 68 (296)
T ss_pred HhHHHHHHHHHHHHHHHHcCCeEEEECCch
Confidence 355667788888888999999999987653
No 182
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=44.84 E-value=17 Score=26.65 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=18.9
Q ss_pred HHHHHHHhhcCCC-CCEEEEEcCCC
Q psy7378 28 LEAIDCLNARSPT-GGYLVYSTCSI 51 (90)
Q Consensus 28 ~~al~~~~~~lkp-gG~lvYsTCS~ 51 (90)
-.|++.|..+|++ ||+++..+|+.
T Consensus 118 G~Al~~A~~lL~~~GGkIi~f~s~~ 142 (244)
T cd01479 118 GPALQAAFLLLKETGGKIIVFQSSL 142 (244)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 4577777777766 99999998885
No 183
>PRK00811 spermidine synthase; Provisional
Probab=44.83 E-value=68 Score=23.98 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=15.4
Q ss_pred HHHHHhhcCCCCCEEEEEcCCC
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSI 51 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~ 51 (90)
.++.+.+.|+|||++|.-+-|.
T Consensus 173 f~~~~~~~L~~gGvlv~~~~~~ 194 (283)
T PRK00811 173 FYENCKRALKEDGIFVAQSGSP 194 (283)
T ss_pred HHHHHHHhcCCCcEEEEeCCCc
Confidence 4455667789999998754443
No 184
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=44.29 E-value=51 Score=25.08 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=25.3
Q ss_pred hhcCCCCCEEEEEcCCCCcccC--HHHHHHHHhcCCcEEeec
Q psy7378 35 NARSPTGGYLVYSTCSILPEEN--EAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 35 ~~~lkpgG~lvYsTCS~~~eEN--E~vV~~~l~~~~~~l~~~ 74 (90)
....+|.-+.|++||...-.-. +.+++.+-+..+..+.++
T Consensus 76 ~~~~~p~~i~v~~tc~~~liGdDi~~v~~~~~~~~~~~vv~~ 117 (399)
T cd00316 76 LKRYKPKVIFVYTTCTTELIGDDIEAVAKEASKEIGIPVVPA 117 (399)
T ss_pred HHHcCCCEEEEecCchhhhhccCHHHHHHHHHHhhCCceEEe
Confidence 3455889999999998765433 455555433346666554
No 185
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=44.19 E-value=38 Score=24.47 Aligned_cols=35 Identities=9% Similarity=-0.057 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCC
Q psy7378 16 LSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 16 l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS 50 (90)
.++--++|.+|=.++.+++...|.|.|..|+.++.
T Consensus 110 ~arRlQiQERLt~qIa~al~~~l~~~gVaV~i~A~ 144 (185)
T cd00642 110 FSRRLQVQERLTKQIAVAIQEILGPQGVAVVIEAT 144 (185)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhCCCcEEEEEEEE
Confidence 33445678889999999999999999999998754
No 186
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=43.84 E-value=37 Score=27.56 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=18.2
Q ss_pred CCCCE-EEEEcCCCCcccCHHHHHHHHh
Q psy7378 39 PTGGY-LVYSTCSILPEENEAVVNYALR 65 (90)
Q Consensus 39 kpgG~-lvYsTCS~~~eENE~vV~~~l~ 65 (90)
|.|-. -|||.||-+| -||+..|.
T Consensus 12 kaGe~~GI~SVCSAHP----lViEAAl~ 35 (426)
T COG4573 12 KAGERIGIYSVCSAHP----LVIEAALR 35 (426)
T ss_pred ccCCcCCceeeccccH----HHHHHHHH
Confidence 55666 6999999999 77777764
No 187
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=43.69 E-value=39 Score=24.33 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCC
Q psy7378 16 LSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 16 l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS 50 (90)
.++--++|.+|=.++.+++...|.|.|..|+..+.
T Consensus 105 ~arRlQiQERlT~qIa~~l~~~l~p~gV~V~ieA~ 139 (180)
T TIGR00063 105 FARRPQVQERLTQQIAEALQEILEPNGVAVVVEAT 139 (180)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhCCCCEEEEEEEE
Confidence 33345678889999999999999999999997643
No 188
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=43.29 E-value=35 Score=19.77 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=23.3
Q ss_pred CCCCCEE-EEEcCCCCcccCHHHHHHHHhcCCcEEeec
Q psy7378 38 SPTGGYL-VYSTCSILPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 38 lkpgG~l-vYsTCS~~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
+++|..| |.+++.-.. ..|..++++.+.++...
T Consensus 24 l~~G~~l~v~~d~~~~~----~di~~~~~~~g~~~~~~ 57 (70)
T PF01206_consen 24 LPPGEVLEVLVDDPAAV----EDIPRWCEENGYEVVEV 57 (70)
T ss_dssp SGTT-EEEEEESSTTHH----HHHHHHHHHHTEEEEEE
T ss_pred cCCCCEEEEEECCccHH----HHHHHHHHHCCCEEEEE
Confidence 4678766 777877776 66777788777776665
No 189
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=43.04 E-value=67 Score=25.08 Aligned_cols=50 Identities=24% Similarity=0.313 Sum_probs=31.9
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC--CcEEeecCCCCCCCCccccCCC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR--DVKLVPTGLDFGTEGFVNYRQN 89 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~--~~~l~~~~~~~g~dGf~~~~~~ 89 (90)
+++..|...|++||.|-...=...+. ..+|++. +++.+. ...||..|+..
T Consensus 247 ~~i~~A~~~L~~gGeL~iVan~~l~y------~~~L~~~Fg~v~~la-----~~~gf~Vl~a~ 298 (300)
T COG2813 247 EIIAAAARHLKPGGELWIVANRHLPY------EKKLKELFGNVEVLA-----KNGGFKVLRAK 298 (300)
T ss_pred HHHHHHHHhhccCCEEEEEEcCCCCh------HHHHHHhcCCEEEEE-----eCCCEEEEEEe
Confidence 55666677789999998887766663 4445443 355544 34667766543
No 190
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=42.84 E-value=24 Score=28.82 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCCc
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCSILP 53 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS~~~ 53 (90)
-|.++++.+.+..+|.-++|++||+-.-
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~sTC~sei 99 (519)
T PRK02910 72 LLKDTLRRADERFQPDLIVVGPSCTAEL 99 (519)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHH
Confidence 4555666666666899999999998644
No 191
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=42.65 E-value=27 Score=26.68 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=13.6
Q ss_pred HHHHHhhcCCCCCEEEEEc
Q psy7378 30 AIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsT 48 (90)
+++.+...|+|||.|+-..
T Consensus 244 vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 244 ILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred HHHHHHHHhCCCcEEEEeC
Confidence 4444556679999998765
No 192
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=42.60 E-value=36 Score=24.77 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=15.8
Q ss_pred HHHHHHhhcCCCCCEEEEEcC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTC 49 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTC 49 (90)
..++.+.++|+|||.||.-.+
T Consensus 159 ~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 159 HFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HHHHHHHHhcCCCeEEEEEcC
Confidence 456667788999999996544
No 193
>TIGR00057 Sua5/YciO/YrdC/YwlC family protein. partial match to sua5, which is involved in regulation of translation initiation. 3' end of sua5 has matches to sua5, BS3690, and weakly to AF0781 and BB0734.
Probab=42.50 E-value=18 Score=25.89 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=21.3
Q ss_pred HhhcCCCCCEEEEEcCCCC----cccCHHHHHHHH
Q psy7378 34 LNARSPTGGYLVYSTCSIL----PEENEAVVNYAL 64 (90)
Q Consensus 34 ~~~~lkpgG~lvYsTCS~~----~eENE~vV~~~l 64 (90)
++..|+.||.++|-|=|++ ...|++-|+++.
T Consensus 14 a~~~L~~G~ii~~PTdTvYgL~~~~~~~~av~ri~ 48 (201)
T TIGR00057 14 AVKILRKGGIVVYPTDTVYGIGADALDEDAVRRLY 48 (201)
T ss_pred HHHHHHCCCEEEEeCCCHHHhhcCCCCHHHHHHHH
Confidence 3344588999999996653 245666666664
No 194
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=42.05 E-value=59 Score=24.82 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=27.8
Q ss_pred HHHHhhcCCCCCEEE------EEcCCC------CcccCHHHHHHHHhcCCcEEeec
Q psy7378 31 IDCLNARSPTGGYLV------YSTCSI------LPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 31 l~~~~~~lkpgG~lv------YsTCS~------~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
++...++|||||.+| |-+... .-|=+-+-|..++++.||+++.-
T Consensus 185 i~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 185 IETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred HHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 344456679998765 777765 12233455667777778887654
No 195
>PLN02397 aspartate transaminase
Probab=41.86 E-value=1.2e+02 Score=23.63 Aligned_cols=48 Identities=6% Similarity=0.065 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHH-----hhcCCC-CCEEEEEcCCCCcccCHHHHHHHHhcCCcEEe
Q psy7378 19 IGKTSLIVILEAIDCL-----NARSPT-GGYLVYSTCSILPEENEAVVNYALRKRDVKLV 72 (90)
Q Consensus 19 l~~~Q~~Ll~~al~~~-----~~~lkp-gG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~ 72 (90)
.-+..++++.++|+.. +..++| ||..+|.-++ ++.++++++++++-+.
T Consensus 340 ~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~------~~~~~~Ll~~~~V~v~ 393 (423)
T PLN02397 340 RIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLN------KEQVDRMTKEYHIYMT 393 (423)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCCC------HHHHHHHHHhCCEEEC
Confidence 3344466777777764 344445 9999998775 4588888888776553
No 196
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=41.86 E-value=23 Score=26.19 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=14.1
Q ss_pred HHHhhcCCCCCEEEEEcC
Q psy7378 32 DCLNARSPTGGYLVYSTC 49 (90)
Q Consensus 32 ~~~~~~lkpgG~lvYsTC 49 (90)
+..++.|||||.|-.+|=
T Consensus 148 ~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 148 KLYARKLKPGGVLHFATD 165 (227)
T ss_pred HHHHHHccCCCEEEEEec
Confidence 445667899999999883
No 197
>PF08854 DUF1824: Domain of unknown function (DUF1824); InterPro: IPR014953 This uncharacterised group of proteins are principally found in cyanobacteria. ; PDB: 2Q22_B.
Probab=41.86 E-value=54 Score=22.44 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeec-C-CCCCCCCccccCCC
Q psy7378 18 TIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPT-G-LDFGTEGFVNYRQN 89 (90)
Q Consensus 18 ~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~-~-~~~g~dGf~~~~~~ 89 (90)
.+...|++.|+++|..+. ..-.....-.|.-..+|.....+..++..++..... + ++..++=|.+|+++
T Consensus 15 ~ls~~~~~~Lr~~L~~~~---~~sd~~~lGIcA~s~~~ai~ALr~~~~alg~~~~~~~~~~~~~GpVfLK~N~~ 85 (125)
T PF08854_consen 15 QLSPSQRKKLRQALRLLA---SNSDWFTLGICAPSAEEAIAALRSYEQALGYPPLEPLDSPPIEGPVFLKANQK 85 (125)
T ss_dssp ---HHHHHHHHHHHHHHH---HTSSEEEEEEEESSHHHHHHHHHHHHHHTT------------SSSEEEEEETT
T ss_pred cCCHHHHHHHHHHHHHHH---hccCceEEEeecCCHHHHHHHHHHHHHHcCCCccCCCCCCCCCCCEEEEecCC
Confidence 456677788888887765 456689999999999999999999888886544221 1 22334556666654
No 198
>PF10666 Phage_Gp14: Phage protein Gp14; InterPro: IPR018923 This Listeria phage Gp14 protein family is of unknown function but is expressed from within a cluster of tail- and base plate genes [].
Probab=41.65 E-value=44 Score=23.31 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=23.7
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy7378 8 DSTLALRALSTIGKTSLIVILEAIDCL 34 (90)
Q Consensus 8 ~~~~~~~~l~~l~~~Q~~Ll~~al~~~ 34 (90)
+++++.+....|-..|+++|.+|++..
T Consensus 59 ~~EmS~e~~~aLe~~~re~L~ea~~~~ 85 (140)
T PF10666_consen 59 DREMSSEEYRALEEQQREALKEAIEIF 85 (140)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888999999999999999999765
No 199
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=41.60 E-value=40 Score=25.39 Aligned_cols=49 Identities=20% Similarity=0.141 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEc--CCCC-cccCHHHHHHH---HhcCCcEEee
Q psy7378 22 TSLIVILEAIDCLNARSPTGGYLVYST--CSIL-PEENEAVVNYA---LRKRDVKLVP 73 (90)
Q Consensus 22 ~Q~~Ll~~al~~~~~~lkpgG~lvYsT--CS~~-~eENE~vV~~~---l~~~~~~l~~ 73 (90)
-|.+++ ..++..+||+||.++-+. -|+. ..+.+.+.+.- |++.++++.+
T Consensus 155 ~Qa~I~---~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 155 DQARIA---ALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp THHHHH---HHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHH---HHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChhe
Confidence 466663 556777899999988765 2232 22334444333 4444566543
No 200
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=41.37 E-value=39 Score=26.75 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHh
Q psy7378 22 TSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALR 65 (90)
Q Consensus 22 ~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~ 65 (90)
.|.+|++++++.+ |.|-+|--|||+.+ -+..+.++
T Consensus 154 ~t~~Iikki~~~i-----pEgAII~~tCTIpt----~~ly~~le 188 (342)
T PRK00961 154 MQPDIIEKFADDI-----KEGAIVTHACTIPT----TKFAKIFK 188 (342)
T ss_pred CchHHHHHHHhhC-----CCCCEEeccccCCH----HHHHHHHH
Confidence 4778888888875 68888888999999 45555554
No 201
>PLN02476 O-methyltransferase
Probab=40.95 E-value=25 Score=26.82 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=16.3
Q ss_pred HHHHHHhhcCCCCCEEEEEcC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTC 49 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTC 49 (90)
..++.+.++|+|||.||.=..
T Consensus 209 ~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 209 DYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred HHHHHHHHhcCCCcEEEEecC
Confidence 456667788999999997554
No 202
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=40.91 E-value=16 Score=26.22 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=15.1
Q ss_pred HHHHHHhhcCCCCCEEEEEcC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTC 49 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTC 49 (90)
++++.....|+|||.|+-...
T Consensus 156 ~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 156 RVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp HHHHHHGGGEEEEEEEEE-TT
T ss_pred HHHHHHHHHcCCCCEEEEecC
Confidence 455666777899999998654
No 203
>PRK07324 transaminase; Validated
Probab=40.83 E-value=1.6e+02 Score=22.37 Aligned_cols=59 Identities=20% Similarity=0.158 Sum_probs=32.7
Q ss_pred HHHHHHHHHHH--hhcCCC-CCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeecCCCCCCCCcc
Q psy7378 24 LIVILEAIDCL--NARSPT-GGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFGTEGFV 84 (90)
Q Consensus 24 ~~Ll~~al~~~--~~~lkp-gG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~~~~~g~dGf~ 84 (90)
++++.+.++.. ...++| ||.-.|..+... .-.++.+++++++.++-+.+- ..++.+|++
T Consensus 285 ~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~~-~~~~~~~~~ll~~~gv~v~pg-~~F~~~~~i 346 (373)
T PRK07324 285 LAILDEWVAKEPRVSYVKPKAVSTSFVKLDVD-MPSEDFCLKLLKETGVLLVPG-NRFDLEGHV 346 (373)
T ss_pred HHHHHHHHhcCCCceEECCCceEEEEEEeCCC-CCHHHHHHHHHHhcCEEEECc-cccCCCCeE
Confidence 44555555431 234566 556677777652 233556677777778776653 234555554
No 204
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=40.41 E-value=31 Score=23.13 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=25.4
Q ss_pred HHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeecC
Q psy7378 32 DCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTG 75 (90)
Q Consensus 32 ~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~~ 75 (90)
+.++++++|||+++=-||+ ..|+..|...||.+...+
T Consensus 74 ~~l~~~~~~~~~l~Tys~a-------~~Vr~~L~~aGF~v~~~~ 110 (124)
T PF05430_consen 74 KKLARLSKPGGTLATYSSA-------GAVRRALQQAGFEVEKVP 110 (124)
T ss_dssp HHHHHHEEEEEEEEES--B-------HHHHHHHHHCTEEEEEEE
T ss_pred HHHHHHhCCCcEEEEeech-------HHHHHHHHHcCCEEEEcC
Confidence 3344556899987654553 568999999999987764
No 205
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=39.91 E-value=59 Score=23.49 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=22.4
Q ss_pred hhcCCCCCEEEEEcC-CCCcccCHHHHHHHHhcC--CcEEeecC
Q psy7378 35 NARSPTGGYLVYSTC-SILPEENEAVVNYALRKR--DVKLVPTG 75 (90)
Q Consensus 35 ~~~lkpgG~lvYsTC-S~~~eENE~vV~~~l~~~--~~~l~~~~ 75 (90)
..+|..||.|+..|| --....++.. ...+++. +-.+++++
T Consensus 76 r~Yl~~GGfl~~D~~~~~~~~~~~~~-r~~~~~v~p~~~L~~lp 118 (207)
T PF13709_consen 76 RRYLENGGFLLFDDRDCGSAGFDASF-RRLMKRVFPEPPLEPLP 118 (207)
T ss_pred HHHHHcCCEEEEECCCcccccccHHH-HHHHHHhcCCCCccCCC
Confidence 345567999999999 3333334333 4444432 34444543
No 206
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=39.65 E-value=21 Score=25.17 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=12.1
Q ss_pred HHhhcCCCCCEEEEEc
Q psy7378 33 CLNARSPTGGYLVYST 48 (90)
Q Consensus 33 ~~~~~lkpgG~lvYsT 48 (90)
.+.+.|||||++|...
T Consensus 162 ~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 162 ALIDQLKEGGILVMPV 177 (215)
T ss_pred HHHHhcCcCcEEEEEE
Confidence 3456679999999864
No 207
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=39.44 E-value=59 Score=18.58 Aligned_cols=28 Identities=25% Similarity=0.045 Sum_probs=20.0
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCCcccC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSILPEEN 56 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~~~eEN 56 (90)
..+..+...++|+|.++.++........
T Consensus 136 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 163 (257)
T COG0500 136 KALRELLRVLKPGGRLVLSDLLRDGLLE 163 (257)
T ss_pred HHHHHHHHhcCCCcEEEEEeccCCCCcc
Confidence 3445555667999999999888766543
No 208
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=39.35 E-value=26 Score=26.79 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=15.5
Q ss_pred HHHHHHhhcCCCCCEE-EEEcCC
Q psy7378 29 EAIDCLNARSPTGGYL-VYSTCS 50 (90)
Q Consensus 29 ~al~~~~~~lkpgG~l-vYsTCS 50 (90)
++++.++..|||||.+ +|+.|.
T Consensus 176 ~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 176 NVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred HHHHHHHHHhCCCcEEEEEcCCH
Confidence 3566677788997765 677775
No 209
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=39.04 E-value=6.2 Score=24.29 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhcCCCCC
Q psy7378 26 VILEAIDCLNARSPTGG 42 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG 42 (90)
-+..+++.+.+++||||
T Consensus 85 ~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 85 ELEALLRRIARLLRPGG 101 (101)
T ss_dssp HHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 34455666677789987
No 210
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=38.60 E-value=41 Score=26.54 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=18.5
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCC
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSIL 52 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~ 52 (90)
+..+++.+.+.|||||.++..-.++.
T Consensus 121 ~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 121 VENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 44566777788899999988644333
No 211
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=38.43 E-value=22 Score=26.79 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=15.7
Q ss_pred HHHHHhhcCCCCCEEEEEcCCCC
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSIL 52 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~~ 52 (90)
-++.+.++|||||+++--+.+..
T Consensus 148 ~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 148 FFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp HHHHHHHHSETTEEEEEEEEEE-
T ss_pred HHHHHHHhcCCCcEEEEEecccc
Confidence 35566778899999986555443
No 212
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=38.11 E-value=72 Score=26.28 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC-CcEE
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR-DVKL 71 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~-~~~l 71 (90)
.+.+|.+..++.||+|..+|+ --|..|--.|+++.++++.. |+++
T Consensus 106 ~v~~aa~sIa~~L~kG~LVIl-EST~~PGTTe~v~~plle~~sgL~~ 151 (436)
T COG0677 106 YVESAARSIAPVLKKGDLVIL-ESTTPPGTTEEVVKPLLEERSGLKF 151 (436)
T ss_pred HHHHHHHHHHHhcCCCCEEEE-ecCCCCCcHHHHHHHHHhhcCCCcc
Confidence 455677888899999998888 56778889999999999873 5444
No 213
>PTZ00484 GTP cyclohydrolase I; Provisional
Probab=38.09 E-value=61 Score=24.77 Aligned_cols=33 Identities=12% Similarity=-0.040 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCC
Q psy7378 18 TIGKTSLIVILEAIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 18 ~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS 50 (90)
+--++|.+|=.++.+++...|.|.|+.|+.++.
T Consensus 186 rRlQiQERLT~qIAdaL~~~L~p~GVaV~ieA~ 218 (259)
T PTZ00484 186 RRLQVQERLTQQIANALQKYLKPMGVAVVIVAS 218 (259)
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 335678889999999999999999999998754
No 214
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=37.22 E-value=72 Score=24.28 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCC
Q psy7378 20 GKTSLIVILEAIDCLNARSPTGGYLVYSTCSI 51 (90)
Q Consensus 20 ~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~ 51 (90)
...+.+-+.++++.+.+.++.||+|+|.=|--
T Consensus 41 v~~~l~~I~~av~~~~~~l~~ggrI~~~GaGt 72 (299)
T PRK05441 41 VEKALPQIAAAVDAAAAALRQGGRLIYIGAGT 72 (299)
T ss_pred HHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcH
Confidence 33445566778888889999999999987653
No 215
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=37.21 E-value=31 Score=27.78 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=21.6
Q ss_pred HHHHHHHhhcC-CCCCEEEEEcCCCCcc-cC-HHHHHHH
Q psy7378 28 LEAIDCLNARS-PTGGYLVYSTCSILPE-EN-EAVVNYA 63 (90)
Q Consensus 28 ~~al~~~~~~l-kpgG~lvYsTCS~~~e-EN-E~vV~~~ 63 (90)
.++++.+...- +|.-+.||+||...-. ++ +.+|+.+
T Consensus 75 ~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi~~vv~~~ 113 (454)
T cd01973 75 EEGVLVLARRYPDLRVIPIITTCSTEIIGDDIEGVIRKL 113 (454)
T ss_pred HHHHHHHHHhcCCCCEEEEECCchHhhhccCHHHHHHHH
Confidence 34455555555 4788999999965443 33 4444443
No 216
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=36.99 E-value=45 Score=26.50 Aligned_cols=26 Identities=15% Similarity=0.009 Sum_probs=18.7
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCCc
Q psy7378 28 LEAIDCLNARSPTGGYLVYSTCSILP 53 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lvYsTCS~~~ 53 (90)
.++++.+.+.|+|||.++..+=...+
T Consensus 320 ~~l~~~a~~~LkpGG~L~iV~nr~l~ 345 (378)
T PRK15001 320 WEMFHHARRCLKINGELYIVANRHLD 345 (378)
T ss_pred HHHHHHHHHhcccCCEEEEEEecCcC
Confidence 34566667788999999988644444
No 217
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=36.85 E-value=29 Score=27.48 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHh
Q psy7378 22 TSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALR 65 (90)
Q Consensus 22 ~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~ 65 (90)
.|.+|++++++.+ |.|-+|--|||+.+ -+..++++
T Consensus 152 ~q~~Iikkii~~l-----pEgAII~~tCTIpt----~~ly~ilE 186 (340)
T TIGR01723 152 KQPDIIKKFIDDI-----PEGAIVTHACTIPT----TKFAKIFE 186 (340)
T ss_pred CchHHHHHHHhhC-----CCCCEEeccccCCh----HHHHHHHH
Confidence 4778888888875 68888888999999 44445554
No 218
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=36.51 E-value=32 Score=28.37 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=20.7
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCCc
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSILP 53 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~~ 53 (90)
|.++++++...-+|.-+.|++||...-
T Consensus 130 L~e~I~~~~~~y~P~~I~V~tTC~~ev 156 (515)
T TIGR01286 130 MVDGLQNCYALYKPKMIAVSTTCMAEV 156 (515)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHH
Confidence 345666677777999999999997644
No 219
>PRK04457 spermidine synthase; Provisional
Probab=36.24 E-value=44 Score=24.77 Aligned_cols=38 Identities=11% Similarity=-0.040 Sum_probs=22.6
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR 67 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~ 67 (90)
..++.+.+.|+|||+++.-..+-.+ .-...++.+-+.+
T Consensus 158 efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l~~l~~~F 195 (262)
T PRK04457 158 PFFDDCRNALSSDGIFVVNLWSRDK-RYDRYLERLESSF 195 (262)
T ss_pred HHHHHHHHhcCCCcEEEEEcCCCch-hHHHHHHHHHHhc
Confidence 3456666778999999986554333 2234444443444
No 220
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=36.05 E-value=93 Score=21.85 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=19.9
Q ss_pred hcCCCCCEEEEEcCCCCcccCHHHHHHHH
Q psy7378 36 ARSPTGGYLVYSTCSILPEENEAVVNYAL 64 (90)
Q Consensus 36 ~~lkpgG~lvYsTCS~~~eENE~vV~~~l 64 (90)
.+.|+++.++.+| ++++|..+.+.+
T Consensus 111 ~L~k~~~kii~~T----g~~~~~~~~~ll 135 (162)
T PF10237_consen 111 LLLKPGGKIILCT----GEEMEELIKKLL 135 (162)
T ss_pred HHhCccceEEEec----HHHHHHHHHHHh
Confidence 3448899999864 788999998888
No 221
>COG3910 Predicted ATPase [General function prediction only]
Probab=36.02 E-value=63 Score=24.40 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCC
Q psy7378 21 KTSLIVILEAIDCLNARSPTGGYLVYSTCSIL 52 (90)
Q Consensus 21 ~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~ 52 (90)
.+|.+||..+=+.+ +.|+-+|.+|-|.-
T Consensus 162 ~RQlella~l~~la----~sGaQ~IiATHSPi 189 (233)
T COG3910 162 SRQLELLAILRDLA----DSGAQIIIATHSPI 189 (233)
T ss_pred HHHHHHHHHHHHHH----hcCCeEEEEecChh
Confidence 46888876544443 78999999999863
No 222
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=35.98 E-value=36 Score=24.74 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=10.0
Q ss_pred hcCCCCCEEEEEc
Q psy7378 36 ARSPTGGYLVYST 48 (90)
Q Consensus 36 ~~lkpgG~lvYsT 48 (90)
.+|||||.|..+.
T Consensus 99 ~vLK~GG~L~l~v 111 (177)
T PF03269_consen 99 CVLKPGGLLFLGV 111 (177)
T ss_pred HhhccCCeEEEEe
Confidence 4469999998864
No 223
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=35.94 E-value=12 Score=28.11 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=13.5
Q ss_pred HHHHHhhcC-CCCCEE-EEEcC
Q psy7378 30 AIDCLNARS-PTGGYL-VYSTC 49 (90)
Q Consensus 30 al~~~~~~l-kpgG~l-vYsTC 49 (90)
++..+.+.| ||||++ +||.|
T Consensus 127 ~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 127 AIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp GHHHHHHHE-EEEEEEEEEESS
T ss_pred HHHHHHHHHhcCCceEEEECCC
Confidence 455666778 788876 57666
No 224
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=35.84 E-value=70 Score=25.06 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=14.7
Q ss_pred CCCCEEEEEcCCCCccc
Q psy7378 39 PTGGYLVYSTCSILPEE 55 (90)
Q Consensus 39 kpgG~lvYsTCS~~~eE 55 (90)
.+|+.+|-.+|++.|+|
T Consensus 27 ~~G~kvvG~~c~y~P~E 43 (380)
T TIGR02263 27 DPGRIVIAFLPVYAPRE 43 (380)
T ss_pred hCCCeEEEEECCCCcHH
Confidence 36999999999999954
No 225
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=35.75 E-value=24 Score=24.02 Aligned_cols=45 Identities=13% Similarity=-0.043 Sum_probs=24.6
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCC-cEEee
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRD-VKLVP 73 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~-~~l~~ 73 (90)
+...+..+.++|||||.++. -|+-....+ ..+..+.+..+ +.+..
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i-~~~~~~~~~-~~~~~~~~~~g~~~~~~ 80 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFI-FIDDREIAG-FLFELALEIFGGFFLRN 80 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEE-EE-CCEECT-HHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHhhcCCCeeEEE-EecchhhhH-HHHHHHHHHhhhhheec
Confidence 34456666778899999754 666655444 23333344434 55544
No 226
>PTZ00146 fibrillarin; Provisional
Probab=35.71 E-value=1e+02 Score=23.86 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=12.6
Q ss_pred HHHhhcCCCCCEEEEE
Q psy7378 32 DCLNARSPTGGYLVYS 47 (90)
Q Consensus 32 ~~~~~~lkpgG~lvYs 47 (90)
.++..+|||||.++.+
T Consensus 221 ~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 221 LNAQYFLKNGGHFIIS 236 (293)
T ss_pred HHHHHhccCCCEEEEE
Confidence 3466789999999884
No 227
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=35.65 E-value=74 Score=23.50 Aligned_cols=39 Identities=10% Similarity=0.228 Sum_probs=24.4
Q ss_pred hcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeecCC
Q psy7378 36 ARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGL 76 (90)
Q Consensus 36 ~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~~~ 76 (90)
+.+++|..+| .+.|+.|+.-+.. ...+.+.++.+++.|.
T Consensus 78 ~~~~~g~~vi-d~st~~p~~~~~~-~~~~~~~g~~~vdaPv 116 (288)
T TIGR01692 78 PKVAKGSLLI-DCSTIDPDSARKL-AELAAAHGAVFMDAPV 116 (288)
T ss_pred hcCCCCCEEE-ECCCCCHHHHHHH-HHHHHHcCCcEEECCC
Confidence 3456665555 4558888766664 4455556777888653
No 228
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=35.54 E-value=55 Score=24.87 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCEEEEE
Q psy7378 20 GKTSLIVILEAIDCLNARSPTGGYLVYS 47 (90)
Q Consensus 20 ~~~Q~~Ll~~al~~~~~~lkpgG~lvYs 47 (90)
...|.+|+.+. +..|+|||.|+-.
T Consensus 217 ~~~q~~il~~f----~~~L~~gG~LflG 240 (268)
T COG1352 217 EETQERILRRF----ADSLKPGGLLFLG 240 (268)
T ss_pred HHHHHHHHHHH----HHHhCCCCEEEEc
Confidence 35677776654 4556999999864
No 229
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=35.47 E-value=1.5e+02 Score=20.54 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=12.9
Q ss_pred hcCCCCCEEEEEcCCCCc
Q psy7378 36 ARSPTGGYLVYSTCSILP 53 (90)
Q Consensus 36 ~~lkpgG~lvYsTCS~~~ 53 (90)
+.|+|||++||-|=.+.+
T Consensus 84 ~~l~~gg~ii~ns~~~~~ 101 (197)
T PRK06274 84 HFLKKGGKIIVNAYAIHP 101 (197)
T ss_pred hhcCCCcEEEEECCCCCC
Confidence 457999999998633443
No 230
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=35.36 E-value=96 Score=23.60 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEEEcCC
Q psy7378 23 SLIVILEAIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 23 Q~~Ll~~al~~~~~~lkpgG~lvYsTCS 50 (90)
+.+-+.++++.+...++.||+|+|.=|-
T Consensus 39 ~l~~I~~av~~~~~~l~~gGrl~~~G~G 66 (291)
T TIGR00274 39 VLPDIAAAVEQIVQAFQQGGRLIYIGAG 66 (291)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECCc
Confidence 3444777888888888999999997653
No 231
>KOG2698|consensus
Probab=35.16 E-value=99 Score=23.42 Aligned_cols=28 Identities=11% Similarity=-0.021 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCEEEEE
Q psy7378 20 GKTSLIVILEAIDCLNARSPTGGYLVYS 47 (90)
Q Consensus 20 ~~~Q~~Ll~~al~~~~~~lkpgG~lvYs 47 (90)
-+.|..|-+++-.++.+.|+|+|+.|-.
T Consensus 175 LQVQERlTkQIA~a~s~~v~p~gVaVV~ 202 (247)
T KOG2698|consen 175 LQVQERLTKQIAVALSQAVQPAGVAVVV 202 (247)
T ss_pred HHHHHHHHHHHHHHHHHhcCccceEEEE
Confidence 4567778888888889999999998865
No 232
>PF14332 DUF4388: Domain of unknown function (DUF4388)
Probab=35.06 E-value=35 Score=20.99 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcccCHHHHHHHHh
Q psy7378 41 GGYLVYSTCSILPEENEAVVNYALR 65 (90)
Q Consensus 41 gG~lvYsTCS~~~eENE~vV~~~l~ 65 (90)
.|.+||++|.+.....++.+..++.
T Consensus 40 ~G~iv~A~~~~~~~~~~eal~~ll~ 64 (103)
T PF14332_consen 40 DGRIVHASSGVLRLQGEEALFELLS 64 (103)
T ss_pred CCEEEEEEeChhHHHHHHHHHHHHc
Confidence 7899999999778888888888875
No 233
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=34.98 E-value=34 Score=25.07 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=12.2
Q ss_pred HHhhcCCCCCEEEEEc
Q psy7378 33 CLNARSPTGGYLVYST 48 (90)
Q Consensus 33 ~~~~~lkpgG~lvYsT 48 (90)
.+.+.|||||.++-++
T Consensus 166 e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 166 ELARVVKPGGIVITVT 181 (272)
T ss_pred HHHhhccCCCEEEEEe
Confidence 3456689999999765
No 234
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=34.89 E-value=35 Score=23.83 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=12.7
Q ss_pred HhhcCCCCCEEEEEcC
Q psy7378 34 LNARSPTGGYLVYSTC 49 (90)
Q Consensus 34 ~~~~lkpgG~lvYsTC 49 (90)
+.+.|+|||.++.+..
T Consensus 161 l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 161 LLEQLKEGGILVAPVG 176 (212)
T ss_pred HHHhcCCCcEEEEEEc
Confidence 4466899999998765
No 235
>KOG3347|consensus
Probab=34.83 E-value=34 Score=24.82 Aligned_cols=25 Identities=36% Similarity=0.727 Sum_probs=17.9
Q ss_pred HHHHhhcCCCCCEEE-EEcCCCCccc
Q psy7378 31 IDCLNARSPTGGYLV-YSTCSILPEE 55 (90)
Q Consensus 31 l~~~~~~lkpgG~lv-YsTCS~~~eE 55 (90)
++.+-+++..||.|| |=+|-++|+.
T Consensus 66 ~D~Le~~m~~Gg~IVDyHgCd~Fper 91 (176)
T KOG3347|consen 66 LDELEPLMIEGGNIVDYHGCDFFPER 91 (176)
T ss_pred HHHHHHHHhcCCcEEeecccCccchh
Confidence 344445556788877 9999999963
No 236
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=33.80 E-value=61 Score=22.81 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcC
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR 67 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~ 67 (90)
+.+|++.+.+.++++..+|+ -+|+.|--.++.+..++++.
T Consensus 99 v~~a~~~i~~~l~~~~lvV~-~STvppGtt~~~~~~ile~~ 138 (185)
T PF03721_consen 99 VESAIESIAPVLRPGDLVVI-ESTVPPGTTEELLKPILEKR 138 (185)
T ss_dssp HHHHHHHHHHHHCSCEEEEE-SSSSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcceEEE-ccEEEEeeehHhhhhhhhhh
Confidence 44566666777788666666 78888888888999988753
No 237
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=33.24 E-value=40 Score=27.25 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=22.0
Q ss_pred HHHHHHHhhcC-CCCCEEEEEcCCCCcccC--HHHHHHH
Q psy7378 28 LEAIDCLNARS-PTGGYLVYSTCSILPEEN--EAVVNYA 63 (90)
Q Consensus 28 ~~al~~~~~~l-kpgG~lvYsTCS~~~eEN--E~vV~~~ 63 (90)
.++++.+...- +|.-+.|++||...-.=. +.+|+.+
T Consensus 78 ~~aI~~~~~~~~~p~~I~V~ttC~~eiIGDDi~~v~~~~ 116 (457)
T TIGR02932 78 EEGVLTLARRYPNLRVIPIITTCSTETIGDDIEGSIRKV 116 (457)
T ss_pred HHHHHHHHHhCCCCCEEEEECCchHHhhcCCHHHHHHHH
Confidence 34455554554 588999999998755332 4444443
No 238
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=32.60 E-value=35 Score=23.99 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=11.3
Q ss_pred HhhcCCCCCEEEEEc
Q psy7378 34 LNARSPTGGYLVYST 48 (90)
Q Consensus 34 ~~~~lkpgG~lvYsT 48 (90)
+.+.|+|||+|+...
T Consensus 159 l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 159 LVRQLKDGGVLVIPV 173 (205)
T ss_pred HHHhcCcCcEEEEEE
Confidence 345679999998853
No 239
>PRK06922 hypothetical protein; Provisional
Probab=32.31 E-value=47 Score=28.73 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=17.2
Q ss_pred HHHHHHHHhhcCCCCCEEEEEc
Q psy7378 27 ILEAIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsT 48 (90)
+.++|+.+.+.|||||.++-+.
T Consensus 516 l~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 516 IKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HHHHHHHHHHHcCCCcEEEEEe
Confidence 4456677778889999999864
No 240
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=32.26 E-value=2.3e+02 Score=21.75 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHH--hhcCCC-CCEEEEEcCCCC---c-ccCHHHHHHHHhcCCcEEeecCCCCCCCCcc
Q psy7378 22 TSLIVILEAIDCL--NARSPT-GGYLVYSTCSIL---P-EENEAVVNYALRKRDVKLVPTGLDFGTEGFV 84 (90)
Q Consensus 22 ~Q~~Ll~~al~~~--~~~lkp-gG~lvYsTCS~~---~-eENE~vV~~~l~~~~~~l~~~~~~~g~dGf~ 84 (90)
..++++.++|+.. .....| ||..++...... . ...++.++.+++++++.+.+- ..++.+|++
T Consensus 316 ~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg-~~f~~~~~i 384 (412)
T PTZ00433 316 EGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPG-EIFHMPGFT 384 (412)
T ss_pred HHHHHHHHHHhcCCCCcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCc-cccCCCCeE
Confidence 3455666666542 334456 677777665321 0 123566677776778776553 234445543
No 241
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=32.24 E-value=39 Score=23.41 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=14.1
Q ss_pred hhcCCCCCEEEEEcCCCCc
Q psy7378 35 NARSPTGGYLVYSTCSILP 53 (90)
Q Consensus 35 ~~~lkpgG~lvYsTCS~~~ 53 (90)
.+.|+|||++||-| .+.+
T Consensus 84 ~~~l~~gg~ii~d~-~~~~ 101 (177)
T TIGR02175 84 TAGLKEDGILIVNT-KKDP 101 (177)
T ss_pred hhCcCCCeEEEEEC-CCCh
Confidence 45679999999986 6655
No 242
>KOG1709|consensus
Probab=32.06 E-value=51 Score=25.34 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=13.4
Q ss_pred HHHHHhhcCCCCCEEEEEc
Q psy7378 30 AIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsT 48 (90)
-.+.+.++|||+|++-|..
T Consensus 188 ~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 188 FHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred HHHHHhhhcCCCceEEEec
Confidence 3445667889999877743
No 243
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=32.02 E-value=55 Score=24.58 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=16.6
Q ss_pred HHHHHhhcCCCCCEEEEEcCCCCc
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSILP 53 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~~~ 53 (90)
.|+.+.+.|+|||.++..+=+..+
T Consensus 159 ~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 159 FLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred HHHHHHHhcCCCCEEEEeccCCCC
Confidence 455556678999999976654443
No 244
>PRK08441 oorC 2-oxoglutarate-acceptor oxidoreductase subunit OorC; Reviewed
Probab=31.87 E-value=62 Score=22.62 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=15.1
Q ss_pred HhhcCCCCCEEEEEcCCCCc
Q psy7378 34 LNARSPTGGYLVYSTCSILP 53 (90)
Q Consensus 34 ~~~~lkpgG~lvYsTCS~~~ 53 (90)
..+.|+|||++||-+..+.+
T Consensus 83 ~~~~l~~gg~ii~n~~~~~~ 102 (183)
T PRK08441 83 FKSGVKEGGIIVVEPNLVKP 102 (183)
T ss_pred HHhhcCCCeEEEEcCCCCCC
Confidence 34667999999998665554
No 245
>KOG3178|consensus
Probab=31.68 E-value=47 Score=26.43 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=16.9
Q ss_pred HHHHHHhhcCCCCCEEEEEcC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTC 49 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTC 49 (90)
++|+++++-|+|||.||-.-|
T Consensus 256 kiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 256 KILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHhCCCCCEEEEEec
Confidence 356777888899999998776
No 246
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=31.58 E-value=54 Score=24.14 Aligned_cols=33 Identities=18% Similarity=0.069 Sum_probs=19.1
Q ss_pred HHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHH
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL 64 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l 64 (90)
-++.+.+.|+|||+++.=.-|. ..++..+..+.
T Consensus 173 f~~~~~~~L~~~Gv~v~~~~~~--~~~~~~~~~i~ 205 (246)
T PF01564_consen 173 FYQLCKRRLKPDGVLVLQAGSP--FLHPELFKSIL 205 (246)
T ss_dssp HHHHHHHHEEEEEEEEEEEEET--TTTHHHHHHHH
T ss_pred HHHHHHhhcCCCcEEEEEccCc--ccchHHHHHHH
Confidence 3455566679999999754332 23344444443
No 247
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=31.40 E-value=37 Score=25.31 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=14.2
Q ss_pred HHHHHhhcCCCCCEEEEEc
Q psy7378 30 AIDCLNARSPTGGYLVYST 48 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsT 48 (90)
-++.+.++|+|||.||.=.
T Consensus 172 y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 172 YHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred HHHHHHHhcCCCeEEEEcC
Confidence 3555668899999998643
No 248
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=31.37 E-value=72 Score=25.20 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHH
Q psy7378 25 IVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYAL 64 (90)
Q Consensus 25 ~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l 64 (90)
.|.+.+++.+ |.|.+|--|||+.|-+==...+..|
T Consensus 98 ~Iarei~~hv-----pEgAVicnTCT~sp~vLy~~LE~~L 132 (340)
T COG4007 98 GIAREILEHV-----PEGAVICNTCTVSPVVLYYSLEGEL 132 (340)
T ss_pred HHHHHHHhhC-----cCCcEecccccCchhHHHHHhhhhh
Confidence 3445566664 7888888899999944433333333
No 249
>PF04194 PDCD2_C: Programmed cell death protein 2, C-terminal putative domain ; InterPro: IPR007320 PDCD2 is localized predominantly in the cytosol of cells situated at the opposite pole of the germinal centre from the centroblasts as well as in cells in the mantle zone. It has been shown to interact with BCL6, an evolutionarily conserved Kruppel-type zinc finger protein that functions as a strong transcriptional repressor and is required for germinal centre development. The rat homologue, Rp8, is associated with programmed cell death in thymocytes.; GO: 0005737 cytoplasm
Probab=31.21 E-value=22 Score=24.79 Aligned_cols=9 Identities=78% Similarity=1.324 Sum_probs=7.0
Q ss_pred CCEEEEEcCC
Q psy7378 41 GGYLVYSTCS 50 (90)
Q Consensus 41 gG~lvYsTCS 50 (90)
|-++|| |||
T Consensus 134 gtv~Vy-TCs 142 (164)
T PF04194_consen 134 GTVLVY-TCS 142 (164)
T ss_pred eEEEEE-Eeh
Confidence 667777 998
No 250
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=31.20 E-value=8 Score=25.64 Aligned_cols=41 Identities=22% Similarity=0.488 Sum_probs=28.4
Q ss_pred EcCCCCcccCHHHHHHHHhcC-CcEEeecCCCCCCCCccccCC
Q psy7378 47 STCSILPEENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQ 88 (90)
Q Consensus 47 sTCS~~~eENE~vV~~~l~~~-~~~l~~~~~~~g~dGf~~~~~ 88 (90)
.+|++...-.++.++.++..+ + .+++-++.+++.|...|-|
T Consensus 19 v~~~~~~~~~~e~~D~~~D~fId-~Ie~~gL~~~Ggg~~~~eG 60 (101)
T PF04320_consen 19 VSCRFAEGTSEEQIDAFVDAFID-VIEPNGLAFGGGGYEQWEG 60 (101)
T ss_pred EEEEECCCCCHHHHHHHHHHHHH-HHHhCCCEEecCCccCEeE
Confidence 478888878888888888876 5 4445455566666555544
No 251
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=30.74 E-value=1.6e+02 Score=21.86 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=25.2
Q ss_pred HHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeecCCC
Q psy7378 33 CLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLD 77 (90)
Q Consensus 33 ~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~~~~ 77 (90)
.+...+++|. ++-.+.|..|++.... ...++..++..++.|..
T Consensus 79 ~l~~~l~~g~-ivid~st~~~~~~~~~-~~~~~~~g~~~~dapvs 121 (301)
T PRK09599 79 ELAPLLSPGD-IVIDGGNSYYKDDIRR-AELLAEKGIHFVDVGTS 121 (301)
T ss_pred HHHhhCCCCC-EEEeCCCCChhHHHHH-HHHHHHcCCEEEeCCCC
Confidence 3344566664 4444556666555554 45566678888887543
No 252
>KOG1331|consensus
Probab=29.91 E-value=94 Score=24.31 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=23.0
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCE-EEEE
Q psy7378 8 DSTLALRALSTIGKTSLIVILEAIDCLNARSPTGGY-LVYS 47 (90)
Q Consensus 8 ~~~~~~~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~-lvYs 47 (90)
|...+...+..|+..-+.. ++++...+.|+|||. +||+
T Consensus 105 d~~lsiavihhlsT~~RR~--~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 105 DAALSIAVIHHLSTRERRE--RALEELLRVLRPGGNALVYV 143 (293)
T ss_pred ccchhhhhhhhhhhHHHHH--HHHHHHHHHhcCCCceEEEE
Confidence 3444445555555544442 566777788899886 6664
No 253
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=29.90 E-value=66 Score=20.44 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=17.1
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCCcc
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSILPE 54 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~~~e 54 (90)
++|.+++-.|+-||.||--+..+..-
T Consensus 26 nal~a~~gtv~gGGllill~p~~~~w 51 (92)
T PF08351_consen 26 NALAALAGTVRGGGLLILLLPPWESW 51 (92)
T ss_dssp HHHHHHHTTB-TT-EEEEEES-GGGT
T ss_pred HHHHHHhcceecCeEEEEEcCCHHHh
Confidence 45666777789999999988876543
No 254
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=29.44 E-value=1.6e+02 Score=19.94 Aligned_cols=36 Identities=11% Similarity=0.280 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHH
Q psy7378 21 KTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNY 62 (90)
Q Consensus 21 ~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~ 62 (90)
..|+.++.+ +++-+|=-|+|+|.-|+ ..|.......
T Consensus 34 ~~~Lk~~~~----~A~~vkG~gT~~~vdCg--d~e~kKLCKK 69 (112)
T cd03067 34 EALLKLLSD----VAQAVKGQGTIAWIDCG--DSESRKLCKK 69 (112)
T ss_pred HHHHHHHHH----HHHHhcCceeEEEEecC--ChHHHHHHHH
Confidence 344555544 44556888999999999 4455444443
No 255
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=29.42 E-value=1.6e+02 Score=19.06 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=30.3
Q ss_pred HHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeecC
Q psy7378 32 DCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTG 75 (90)
Q Consensus 32 ~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~~ 75 (90)
+.+...|+||...|..-| .+..++.|...+++++-+++...
T Consensus 46 ~ev~~~L~~GssAl~~lv---~~~~~d~v~~~l~~~gg~v~~t~ 86 (102)
T PF06897_consen 46 KEVGEALKPGSSALFLLV---DEATEDKVDAALRKFGGKVLRTS 86 (102)
T ss_pred HHHHhhcCCCceEEEEEe---ccCCHHHHHHHHHhcCCEEEecc
Confidence 334455799999999877 45677888888988877776654
No 256
>PLN02531 GTP cyclohydrolase I
Probab=29.28 E-value=80 Score=26.17 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcC
Q psy7378 17 STIGKTSLIVILEAIDCLNARSPTGGYLVYSTC 49 (90)
Q Consensus 17 ~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTC 49 (90)
++--++|.+|=.+|.+++...|.|.|+.|...+
T Consensus 152 ArRlQvQERLT~qIA~aL~~~l~p~GVaVvieA 184 (469)
T PLN02531 152 AKRLQDPQRLADEICSALHHGIKPAGVAVVLEC 184 (469)
T ss_pred hcCchhHHHHHHHHHHHHHHhhCCCcEEEEEEE
Confidence 333467888999999999999999999987644
No 257
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=29.25 E-value=1.8e+02 Score=19.50 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=26.5
Q ss_pred CCCCEEEEEcCCCCcccC----------HHHHHHHHhcCCcEE--eecCCCC-CCCCcc
Q psy7378 39 PTGGYLVYSTCSILPEEN----------EAVVNYALRKRDVKL--VPTGLDF-GTEGFV 84 (90)
Q Consensus 39 kpgG~lvYsTCS~~~eEN----------E~vV~~~l~~~~~~l--~~~~~~~-g~dGf~ 84 (90)
+.|-.++++|---..... -.++...|+++++.. +-++.++ |.+||+
T Consensus 38 ~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~kp~~~~~~~~ 96 (126)
T TIGR01689 38 ALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGKPWCGHDGFY 96 (126)
T ss_pred HCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCCCcCCCCCce
Confidence 458889998876555422 135556667675443 3333444 457775
No 258
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=28.85 E-value=65 Score=25.80 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCCCcccC--HHHHHHHHhcCCcEEeecC
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSILPEEN--EAVVNYALRKRDVKLVPTG 75 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~~~eEN--E~vV~~~l~~~~~~l~~~~ 75 (90)
|.+++..+....+|.-+.|++||...-.=. +.+++.+ +.++.+.+++
T Consensus 63 L~eaI~ea~e~y~P~lI~VvTTCvseIIGDDIeaVvkE~--~~giPVI~V~ 111 (352)
T TIGR03282 63 LVKVIRYAEEKFKPELIGVVGTCASMIIGEDLKEAVDEA--DVDAEVIAVE 111 (352)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCchhhccCCHHHHHHHh--CCCCCEEEEE
Confidence 344556666777999999999998654322 3444433 2355565553
No 259
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=28.62 E-value=29 Score=26.60 Aligned_cols=47 Identities=32% Similarity=0.494 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeec
Q psy7378 24 LIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 24 ~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
.+.|.+.+..+.++++|||.+|-|= +..++-+.+++ .+++ ++++...
T Consensus 235 ~~vL~~l~~~~~~~l~~~G~lIlSG--Il~~~~~~v~~-a~~~-g~~~~~~ 281 (295)
T PF06325_consen 235 ADVLLELAPDIASLLKPGGYLILSG--ILEEQEDEVIE-AYKQ-GFELVEE 281 (295)
T ss_dssp HHHHHHHHHHCHHHEEEEEEEEEEE--EEGGGHHHHHH-HHHT-TEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEcc--ccHHHHHHHHH-HHHC-CCEEEEE
Confidence 3456666677778899999999864 55555555554 4465 8887664
No 260
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=28.48 E-value=50 Score=22.94 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=14.8
Q ss_pred hhcCCCCCEEEEEcCCCCcc
Q psy7378 35 NARSPTGGYLVYSTCSILPE 54 (90)
Q Consensus 35 ~~~lkpgG~lvYsTCS~~~e 54 (90)
.+.|+|||.+||-| ++.++
T Consensus 84 ~~~l~~gg~vi~ns-~~~~~ 102 (181)
T PRK08534 84 TSGLKKDGIIIINT-TKDPE 102 (181)
T ss_pred hcCcCCCcEEEEEC-CCChH
Confidence 46689999999987 66653
No 261
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=28.31 E-value=53 Score=27.50 Aligned_cols=18 Identities=28% Similarity=0.456 Sum_probs=15.5
Q ss_pred hhcCCCCCEEEEEcCCCC
Q psy7378 35 NARSPTGGYLVYSTCSIL 52 (90)
Q Consensus 35 ~~~lkpgG~lvYsTCS~~ 52 (90)
-+.|+|||.+|+|.=.++
T Consensus 206 dRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 206 DRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hhhhccCceEEecCCccc
Confidence 456799999999998887
No 262
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=27.93 E-value=92 Score=24.92 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCcccCHHHHHHHHhcC
Q psy7378 40 TGGYLVYSTCSILPEENEAVVNYALRKR 67 (90)
Q Consensus 40 pgG~lvYsTCS~~~eENE~vV~~~l~~~ 67 (90)
..|++.|-+|+= ..++++..+++++
T Consensus 114 ~~gVI~yNdc~D---~t~Eiil~fckky 138 (347)
T PF06306_consen 114 DEGVIGYNDCTD---GTEEIILEFCKKY 138 (347)
T ss_pred hccEEEeecCCC---CHHHHHHHHHHhC
Confidence 499999999964 4488999999987
No 263
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=27.77 E-value=1.7e+02 Score=22.82 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=26.6
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhc
Q psy7378 28 LEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRK 66 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~ 66 (90)
..+++.+.+.+++|..+|.. .|+.|...+++...++++
T Consensus 100 ~~~~~~i~~~l~~g~lvi~~-STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 100 ESAAETIAKHLRKGATVVLE-STVPPGTTEEVVKPILER 137 (411)
T ss_pred HHHHHHHHHhcCCCCEEEEe-CcCCCCchHHHHHHHHHh
Confidence 33444455667888777764 488888888888888765
No 264
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=27.58 E-value=29 Score=23.26 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=11.6
Q ss_pred EEEEEcCCCCcccCHHHHHHHHhc
Q psy7378 43 YLVYSTCSILPEENEAVVNYALRK 66 (90)
Q Consensus 43 ~lvYsTCS~~~eENE~vV~~~l~~ 66 (90)
-|.|+-|++.+||--..+..++..
T Consensus 9 FLTYpqC~l~ke~~l~~L~~l~~~ 32 (114)
T PF00799_consen 9 FLTYPQCSLTKEEALEQLKNLLTP 32 (114)
T ss_dssp EEEETT----HHHHHHHHHH---S
T ss_pred eeEccCCCCCHHHHHHHHHHhCCc
Confidence 588999999997755555554443
No 265
>PLN02366 spermidine synthase
Probab=27.43 E-value=55 Score=25.16 Aligned_cols=17 Identities=12% Similarity=0.215 Sum_probs=12.7
Q ss_pred HHHHHhhcCCCCCEEEE
Q psy7378 30 AIDCLNARSPTGGYLVY 46 (90)
Q Consensus 30 al~~~~~~lkpgG~lvY 46 (90)
.++.+.+.|+|||+++-
T Consensus 188 f~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 188 FFESVARALRPGGVVCT 204 (308)
T ss_pred HHHHHHHhcCCCcEEEE
Confidence 35556677899999964
No 266
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=27.41 E-value=76 Score=23.33 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=15.8
Q ss_pred HHHHHHHhhcCCCCCEEE-EEcCC
Q psy7378 28 LEAIDCLNARSPTGGYLV-YSTCS 50 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lv-YsTCS 50 (90)
...++.+.++|+|||.|+ |--=.
T Consensus 121 ~~lf~~a~~~L~~gG~L~~YGPF~ 144 (204)
T PF06080_consen 121 EGLFAGAARLLKPGGLLFLYGPFN 144 (204)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCcc
Confidence 345677788899999864 54433
No 267
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=27.31 E-value=93 Score=19.48 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=21.8
Q ss_pred cCCCCCEEEEEc-------CCCCcccCHHHHHHHHhcCC--cEEeec
Q psy7378 37 RSPTGGYLVYST-------CSILPEENEAVVNYALRKRD--VKLVPT 74 (90)
Q Consensus 37 ~lkpgG~lvYsT-------CS~~~eENE~vV~~~l~~~~--~~l~~~ 74 (90)
+++...++||+. |.+.. .+..+|++.+ ++..++
T Consensus 8 ~i~~~~Vvvf~kg~~~~~~Cp~C~-----~ak~lL~~~~i~~~~~di 49 (97)
T TIGR00365 8 QIKENPVVLYMKGTPQFPQCGFSA-----RAVQILKACGVPFAYVNV 49 (97)
T ss_pred HhccCCEEEEEccCCCCCCCchHH-----HHHHHHHHcCCCEEEEEC
Confidence 346789999964 88775 5566776664 444444
No 268
>PRK00536 speE spermidine synthase; Provisional
Probab=27.07 E-value=1.2e+02 Score=22.97 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=15.2
Q ss_pred HHHhhcCCCCCEEEEEcCCCCc
Q psy7378 32 DCLNARSPTGGYLVYSTCSILP 53 (90)
Q Consensus 32 ~~~~~~lkpgG~lvYsTCS~~~ 53 (90)
+.+.+.|+|||++|-=.-|...
T Consensus 155 ~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 155 DGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred HHHHHhcCCCcEEEECCCCccc
Confidence 3445567999999985555553
No 269
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=27.00 E-value=2.8e+02 Score=21.02 Aligned_cols=48 Identities=6% Similarity=0.169 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhcCCC-CCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeec
Q psy7378 24 LIVILEAIDCLNARSPT-GGYLVYSTCSILPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 24 ~~Ll~~al~~~~~~lkp-gG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
++.+.+.|+......+| ||..++..++. ...+.++.++++.++.+.+-
T Consensus 307 ~~~~~~~L~~~~~~~~p~~g~f~~~~~~~---~~~~~~~~ll~~~gv~v~pg 355 (396)
T PRK09147 307 FDAVTPILAPVLDVQLPDAGFYLWAKVPG---DDTEFARRLYADYNVTVLPG 355 (396)
T ss_pred HHHHHHHHHHhcCCCCCCeeEEEEEECCC---CHHHHHHHHHHhCCEEEeCC
Confidence 34444455543444445 99999999872 23455566666678777653
No 270
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=26.78 E-value=74 Score=25.34 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=14.7
Q ss_pred HhhcCCCCCEEEEEcCCCCcc
Q psy7378 34 LNARSPTGGYLVYSTCSILPE 54 (90)
Q Consensus 34 ~~~~lkpgG~lvYsTCS~~~e 54 (90)
+.+.++|||+++|=+=...+-
T Consensus 320 l~~~~~pgaRV~~Rsa~~~~~ 340 (380)
T PF11899_consen 320 LARTARPGARVLWRSAAVPPW 340 (380)
T ss_pred HHHHhCCCCEEEEeeCCCCCC
Confidence 344459999999976665553
No 271
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=26.75 E-value=31 Score=25.94 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCc
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDV 69 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~ 69 (90)
.+|+.+++.|.|||+||.=-=.. +. -.+.|++|.+++++
T Consensus 193 ~aLe~lyprl~~GGiIi~DDY~~-~g-cr~AvdeF~~~~gi 231 (248)
T PF05711_consen 193 DALEFLYPRLSPGGIIIFDDYGH-PG-CRKAVDEFRAEHGI 231 (248)
T ss_dssp HHHHHHGGGEEEEEEEEESSTTT-HH-HHHHHHHHHHHTT-
T ss_pred HHHHHHHhhcCCCeEEEEeCCCC-hH-HHHHHHHHHHHcCC
Confidence 47788899999999999633222 22 24667888888854
No 272
>PLN02823 spermine synthase
Probab=26.62 E-value=1.4e+02 Score=23.32 Aligned_cols=16 Identities=19% Similarity=0.384 Sum_probs=11.5
Q ss_pred HHhhcCCCCCEEEEEc
Q psy7378 33 CLNARSPTGGYLVYST 48 (90)
Q Consensus 33 ~~~~~lkpgG~lvYsT 48 (90)
.+.+.|+|||++|--.
T Consensus 205 ~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 205 IVKPKLNPGGIFVTQA 220 (336)
T ss_pred HHHHhcCCCcEEEEec
Confidence 4556789999987543
No 273
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=26.50 E-value=2.6e+02 Score=20.74 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=25.7
Q ss_pred HHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeecCC
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGL 76 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~~~ 76 (90)
+++.+.+.+++|. ++--+-|..|.+-.+..+ .++..++..++.|.
T Consensus 76 v~~~i~~~l~~g~-ivid~st~~~~~~~~~~~-~~~~~g~~~vdapV 120 (299)
T PRK12490 76 VIKDLYPLLSPGD-IVVDGGNSRYKDDLRRAE-ELAERGIHYVDCGT 120 (299)
T ss_pred HHHHHhccCCCCC-EEEECCCCCchhHHHHHH-HHHHcCCeEEeCCC
Confidence 3344445566654 444344666655555544 55566788888654
No 274
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=26.42 E-value=1.6e+02 Score=17.95 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=23.7
Q ss_pred hcCCCCCE-EEEEcCCCCcccCHHHHHHHHhcCCcEEeec
Q psy7378 36 ARSPTGGY-LVYSTCSILPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 36 ~~lkpgG~-lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
+-+++|+. .|-+++.-.. ..|..+++..+.++...
T Consensus 31 ~~l~~G~~l~V~~dd~~~~----~di~~~~~~~G~~~~~~ 66 (81)
T PRK00299 31 RNMQPGETLLIIADDPATT----RDIPSFCRFMDHELLAQ 66 (81)
T ss_pred HcCCCCCEEEEEeCCccHH----HHHHHHHHHcCCEEEEE
Confidence 33478885 6777776655 66677777777777654
No 275
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=26.22 E-value=43 Score=23.72 Aligned_cols=29 Identities=21% Similarity=0.159 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcccCHHHHHHHHhcCCcE
Q psy7378 42 GYLVYSTCSILPEENEAVVNYALRKRDVK 70 (90)
Q Consensus 42 G~lvYsTCS~~~eENE~vV~~~l~~~~~~ 70 (90)
|.++|..|.+.++-....+..+++..+++
T Consensus 179 G~~~y~g~~~~~~~~~~l~~~~~~~agi~ 207 (207)
T PF08532_consen 179 GRAVYLGTSPDDALLDALLRELLAEAGIE 207 (207)
T ss_dssp TTEEEE-B---HHHHHHHHHHHHHHTT--
T ss_pred cEEEEEEecCCHHHHHHHHHHHHHHcCCC
Confidence 89999999999988888888888776553
No 276
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=25.66 E-value=2.4e+02 Score=19.68 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=13.4
Q ss_pred hhcCCCCCEEEEEcCCCCc
Q psy7378 35 NARSPTGGYLVYSTCSILP 53 (90)
Q Consensus 35 ~~~lkpgG~lvYsTCS~~~ 53 (90)
.+.|||||++|+-+=.+.+
T Consensus 84 ~~~lk~gg~ii~n~~~~~~ 102 (197)
T PRK06853 84 LPYLKKGGKVVVNTQPIVP 102 (197)
T ss_pred HHhcCCCcEEEEECCCCCC
Confidence 3457999999997544444
No 277
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3.5.4.16 from EC) catalyses the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. The comparison of the sequence of the enzyme from bacterial and eukaryotic sources shows that the structure of this enzyme has been extremely well conserved throughout evolution []. NADPH-dependent nitrile oxidoreductases are involved in the biosynthesis of queuosine, a 7-deazaguanine-modified nucleoside found in tRNA(GUN) of bacteria and eukaryotes []. This entry represents a common fold found in GTP cyclohydrolase I and NADPH-dependent nitrile oxidoreducases [].; PDB: 1A8R_E 1GTP_L 1N3R_O 1N3T_O 1FBX_I 1N3S_B 1A9C_I 1IS8_E 1IS7_G 1WPL_F ....
Probab=25.52 E-value=59 Score=23.40 Aligned_cols=29 Identities=14% Similarity=0.031 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCEEEEEcC
Q psy7378 21 KTSLIVILEAIDCLNARSPTGGYLVYSTC 49 (90)
Q Consensus 21 ~~Q~~Ll~~al~~~~~~lkpgG~lvYsTC 49 (90)
++|-+|=.++.+.+...|.|.|..|+.+.
T Consensus 110 QlQERLT~qIa~~l~~~l~p~gV~V~i~A 138 (179)
T PF01227_consen 110 QLQERLTRQIADALEEILGPKGVAVVIEA 138 (179)
T ss_dssp E-HHHHHHHHHHHHHHHHTSSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEEEe
Confidence 46888888888888889999999998753
No 278
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=25.51 E-value=1.8e+02 Score=23.72 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeecCCCCC
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFG 79 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~~~~~g 79 (90)
.++..++.+.+.|+||.+| --.++..+...+...+. +.+.++..++.+...|
T Consensus 79 ~v~~vi~~l~~~L~~g~iI-ID~gn~~~~dt~~r~~~-l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 79 AVDETIDNLLPLLEKGDII-IDGGNEWYLNTERRIKR-CEEKGILYLGMGVSGG 130 (470)
T ss_pred HHHHHHHHHHhhCCCCCEE-EECCCCCHHHHHHHHHH-HHHcCCeEEcCCCCCC
Confidence 3444556666778877655 44666667677666544 4456788888765533
No 279
>PLN02531 GTP cyclohydrolase I
Probab=25.34 E-value=1.2e+02 Score=25.24 Aligned_cols=34 Identities=9% Similarity=0.001 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCC
Q psy7378 16 LSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 16 l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS 50 (90)
.++--++|.+|=.+|.+++.. |.|.|+.|...++
T Consensus 389 ~arRlQvQERLT~qIA~al~~-l~p~GVaVvieA~ 422 (469)
T PLN02531 389 YGFRLQVQERLTRQIAETVSS-LLGGDVMVVVEAS 422 (469)
T ss_pred HhccchHHHHHHHHHHHHHHH-hCCCceEEEEEeE
Confidence 333456788899999999988 9999999998764
No 280
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=25.31 E-value=1.5e+02 Score=17.31 Aligned_cols=36 Identities=8% Similarity=-0.032 Sum_probs=24.8
Q ss_pred hcCCCCCE-EEEEcCCCCcccCHHHHHHHHhcCCcEEeecC
Q psy7378 36 ARSPTGGY-LVYSTCSILPEENEAVVNYALRKRDVKLVPTG 75 (90)
Q Consensus 36 ~~lkpgG~-lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~~ 75 (90)
+-+++|+. .|-++|.-.. ..|..++++.+.++....
T Consensus 21 ~~l~~G~~l~V~~d~~~a~----~di~~~~~~~G~~~~~~~ 57 (69)
T cd03420 21 DKLQDGEQLEVKASDPGFA----RDAQAWCKSTGNTLISLE 57 (69)
T ss_pred HcCCCCCEEEEEECCccHH----HHHHHHHHHcCCEEEEEE
Confidence 34578885 5677776665 667777887887776543
No 281
>PF07137 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IPR010788 This family represents a conserved region approximately 350 residues long within plant violaxanthin de-epoxidase (VDE). In higher plants, violaxanthin de-epoxidase forms part of a conserved system that dissipates excess energy as heat in the light-harvesting complexes of photosystem II (PSII), thus protecting them from photo-inhibitory damage [].; GO: 0046422 violaxanthin de-epoxidase activity, 0055114 oxidation-reduction process, 0009507 chloroplast; PDB: 3CQN_B 3CQR_A.
Probab=25.30 E-value=79 Score=23.40 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCCcccCHHHHHHHHhcCCcE
Q psy7378 41 GGYLVYSTCSILPEENEAVVNYALRKRDVK 70 (90)
Q Consensus 41 gG~lvYsTCS~~~eENE~vV~~~l~~~~~~ 70 (90)
||.+||+.=+..|++-..-++.+.++.|+.
T Consensus 148 gGAvVYtrs~~lP~s~~p~l~~aa~k~G~d 177 (198)
T PF07137_consen 148 GGAVVYTRSPTLPESIVPELRRAAKKAGID 177 (198)
T ss_dssp EEEEEEESSSS--GGGHHHHHHHHHHTT--
T ss_pred CceEEEeCCCCCChHHhHHHHHHHHHhCCC
Confidence 799999999999999999999999988643
No 282
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=25.16 E-value=46 Score=23.65 Aligned_cols=13 Identities=23% Similarity=0.370 Sum_probs=10.0
Q ss_pred hhcCCCCCEEEEE
Q psy7378 35 NARSPTGGYLVYS 47 (90)
Q Consensus 35 ~~~lkpgG~lvYs 47 (90)
.+.|||||+||-.
T Consensus 163 ~~~LkpgG~lvi~ 175 (212)
T PRK13942 163 IEQLKDGGIMVIP 175 (212)
T ss_pred HHhhCCCcEEEEE
Confidence 3457999998874
No 283
>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna
Probab=25.11 E-value=1.2e+02 Score=23.36 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCCccc----------------CHHHHHHHHhcCCcEEeec
Q psy7378 41 GGYLVYSTCSILPEE----------------NEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 41 gG~lvYsTCS~~~eE----------------NE~vV~~~l~~~~~~l~~~ 74 (90)
+...|+.+|-++|-| +...++.+++++.|.++|.
T Consensus 51 ~kp~I~I~ARvHPgEt~~Swi~~g~l~~L~~~d~~a~~Lr~~~~f~IvPm 100 (278)
T cd06906 51 NRPYIFLSARVHPGETNASWVMKGTLEFLMSSSPTAQSLRESYIFKIVPM 100 (278)
T ss_pred CCcEEEEEcccCCCcchHHHHHHHHHHHHhCCCHHHHHHHHhCcEEEEee
Confidence 567899999999999 3334444445557888875
No 284
>PRK05764 aspartate aminotransferase; Provisional
Probab=25.10 E-value=3e+02 Score=20.67 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHH--hhcCCC-CCEEEEEcCCCCccc----CHHHHHHHHhcCCcEEee
Q psy7378 23 SLIVILEAIDCL--NARSPT-GGYLVYSTCSILPEE----NEAVVNYALRKRDVKLVP 73 (90)
Q Consensus 23 Q~~Ll~~al~~~--~~~lkp-gG~lvYsTCS~~~eE----NE~vV~~~l~~~~~~l~~ 73 (90)
+++.+.+.|+.. .+..+| ||..+...+.-.... ..+....+++++++-+.+
T Consensus 300 ~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~ 357 (393)
T PRK05764 300 RRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVP 357 (393)
T ss_pred HHHHHHHHHhhCCCCcccCCCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEcc
Confidence 344555566543 344556 567777777643222 156666667777877654
No 285
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=25.07 E-value=2.9e+02 Score=20.52 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeecCCC
Q psy7378 28 LEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLD 77 (90)
Q Consensus 28 ~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~~~~ 77 (90)
..+++.+.+.+++|- +|-.+.+..+.+.....+ .++..++..++.+..
T Consensus 73 ~~v~~~l~~~l~~g~-ivid~st~~~~~t~~~~~-~~~~~g~~~vda~vs 120 (298)
T TIGR00872 73 DAVLEELAPTLEKGD-IVIDGGNSYYKDSLRRYK-LLKEKGIHLLDCGTS 120 (298)
T ss_pred HHHHHHHHhhCCCCC-EEEECCCCCcccHHHHHH-HHHhcCCeEEecCCC
Confidence 344555566677765 444455556666666544 455567777777543
No 286
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=24.51 E-value=1.3e+02 Score=19.51 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=19.9
Q ss_pred CCCEEEEEcCCCCcccCHHHHHHHHh
Q psy7378 40 TGGYLVYSTCSILPEENEAVVNYALR 65 (90)
Q Consensus 40 pgG~lvYsTCS~~~eENE~vV~~~l~ 65 (90)
.||-+|-+|.-..+.+++.....+++
T Consensus 41 ~~gElvlttg~~~~~~~~~~~~~~i~ 66 (123)
T PF07905_consen 41 RGGELVLTTGYALRDDDEEELREFIR 66 (123)
T ss_pred CCCeEEEECCcccCCCCHHHHHHHHH
Confidence 38999999999988888775555554
No 287
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=24.40 E-value=1.6e+02 Score=17.20 Aligned_cols=34 Identities=15% Similarity=0.035 Sum_probs=24.1
Q ss_pred cCCCCCE-EEEEcCCCCcccCHHHHHHHHhcCCcEEeec
Q psy7378 37 RSPTGGY-LVYSTCSILPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 37 ~lkpgG~-lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
-+++|+. .|.+++.... ..|..++++.+.+++..
T Consensus 22 ~l~~G~~l~V~~dd~~s~----~di~~~~~~~g~~~~~~ 56 (69)
T cd03423 22 KMKPGDTLLVLATDPSTT----RDIPKFCTFLGHELLAQ 56 (69)
T ss_pred cCCCCCEEEEEeCCCchH----HHHHHHHHHcCCEEEEE
Confidence 3477885 6677777665 66777788788887664
No 288
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=24.35 E-value=70 Score=25.80 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=24.4
Q ss_pred HHHHHHHHhhcC-CCCCEEEEEcCCCCcccC--HHHHHHHH
Q psy7378 27 ILEAIDCLNARS-PTGGYLVYSTCSILPEEN--EAVVNYAL 64 (90)
Q Consensus 27 l~~al~~~~~~l-kpgG~lvYsTCS~~~eEN--E~vV~~~l 64 (90)
|.++++.+.... +|.-+.|++||...-.=. +.+++.+-
T Consensus 80 L~~ai~~~~~~~~~p~~i~v~ttc~~eiiGDDi~~v~~~~~ 120 (461)
T TIGR02931 80 VEEAVDVLLTRYPDVKVVPIITTCSTEIIGDDVDGLISKLN 120 (461)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCchHHhhhcCHHHHHHHHH
Confidence 445666666666 488889999998654322 45555543
No 289
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=24.35 E-value=1.9e+02 Score=23.16 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=26.5
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhc
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRK 66 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~ 66 (90)
.+.+.+.+.+++|..+|. ..|+.|...++++..++++
T Consensus 101 ~a~~~i~~~l~~g~lVI~-~STv~pgtt~~~~~~~l~~ 137 (425)
T PRK15182 101 KASETVGTVLNRGDIVVY-ESTVYPGCTEEECVPILAR 137 (425)
T ss_pred HHHHHHHHhcCCCCEEEE-ecCCCCcchHHHHHHHHHh
Confidence 344455566777665555 7889999999888888765
No 290
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=24.20 E-value=29 Score=24.70 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=13.3
Q ss_pred HHHhhcCCCCCEEEEEcC
Q psy7378 32 DCLNARSPTGGYLVYSTC 49 (90)
Q Consensus 32 ~~~~~~lkpgG~lvYsTC 49 (90)
+..++.|+|||.|...|=
T Consensus 117 ~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 117 ELLARVLKPGGELYFATD 134 (195)
T ss_dssp HHHHHHEEEEEEEEEEES
T ss_pred HHHHHHcCCCCEEEEEeC
Confidence 344566799999988773
No 291
>PRK13937 phosphoheptose isomerase; Provisional
Probab=23.80 E-value=2.2e+02 Score=19.81 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCc
Q psy7378 18 TIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILP 53 (90)
Q Consensus 18 ~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~ 53 (90)
...+.+.+-|+++.+.+.+.++.+|++.+.-|--.-
T Consensus 15 ~~~~~~~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~ 50 (188)
T PRK13937 15 AFLESLLEAIAKVAEALIEALANGGKILLCGNGGSA 50 (188)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHCCCEEEEEeCcHhH
Confidence 334456678888999999999999999988886554
No 292
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=23.79 E-value=3.3e+02 Score=20.69 Aligned_cols=61 Identities=13% Similarity=0.236 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHH--hhcCCC-CCEEEEEcCCC--Cc--ccCHHHHHHHHhcCCcEEeecCCCCCCCCcc
Q psy7378 23 SLIVILEAIDCL--NARSPT-GGYLVYSTCSI--LP--EENEAVVNYALRKRDVKLVPTGLDFGTEGFV 84 (90)
Q Consensus 23 Q~~Ll~~al~~~--~~~lkp-gG~lvYsTCS~--~~--eENE~vV~~~l~~~~~~l~~~~~~~g~dGf~ 84 (90)
.++.+.++|+.. +....| ||..++...+- .+ ...++.++.+++++++-+.+- ..++.+||+
T Consensus 308 ~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg-~~f~~~~~i 375 (401)
T TIGR01264 308 NAMLCYGALAAVPGLRPVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPG-SCFEYPGFF 375 (401)
T ss_pred HHHHHHHHHHhCCCCcccCCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCc-hhcCCCCeE
Confidence 355666666653 233345 88888876542 11 123566667777788876553 224445553
No 293
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=23.79 E-value=88 Score=20.66 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=13.7
Q ss_pred cCCCCCEEEEEcCCCCcccCHH
Q psy7378 37 RSPTGGYLVYSTCSILPEENEA 58 (90)
Q Consensus 37 ~lkpgG~lvYsTCS~~~eENE~ 58 (90)
+++.||.+|..-.|-...||-.
T Consensus 76 ~v~~GG~li~~~~s~~~d~~~~ 97 (154)
T cd03143 76 YVENGGTLVAGPRSGAVDEHDA 97 (154)
T ss_pred HHHCCCEEEEecCcCccCCCCC
Confidence 3456777777666666666543
No 294
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=23.79 E-value=1.9e+02 Score=20.24 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeecCC
Q psy7378 40 TGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGL 76 (90)
Q Consensus 40 pgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~~~ 76 (90)
..-++.-.-+|-.|+-.-..|..+|.++|+++.|+.|
T Consensus 15 ~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP 51 (140)
T COG1832 15 SAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNP 51 (140)
T ss_pred hCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCc
Confidence 4558999999999999999999999999999999865
No 295
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=23.71 E-value=31 Score=24.91 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=15.2
Q ss_pred HHHHHhhcCCCCCEEEEEcCC
Q psy7378 30 AIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS 50 (90)
.++.+.++|+|||.||.=..=
T Consensus 137 y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 137 YFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp HHHHHHHHEEEEEEEEEETTT
T ss_pred HHHHHhhhccCCeEEEEcccc
Confidence 345556788999999986544
No 296
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=23.42 E-value=52 Score=21.49 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEcCCCC
Q psy7378 22 TSLIVILEAIDCLNARSPTGGYLVYSTCSIL 52 (90)
Q Consensus 22 ~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~ 52 (90)
+-.+|..+|++.+ +..|.=|-.+||+.
T Consensus 56 ia~~L~~~al~~a----r~~g~kiiP~Csf~ 82 (99)
T COG2388 56 IAQKLVEKALEEA----REAGLKIIPLCSFA 82 (99)
T ss_pred HHHHHHHHHHHHH----HHcCCeEcccchHH
Confidence 3345888888888 78999999999943
No 297
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.15 E-value=1e+02 Score=22.57 Aligned_cols=25 Identities=16% Similarity=0.053 Sum_probs=19.4
Q ss_pred HHHHHHHHhhcCCCCCEEEEEcCCC
Q psy7378 27 ILEAIDCLNARSPTGGYLVYSTCSI 51 (90)
Q Consensus 27 l~~al~~~~~~lkpgG~lvYsTCS~ 51 (90)
...+++.+-+.|||||.|--|.=++
T Consensus 65 g~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 65 GTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred HHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 4467778889999999998776554
No 298
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.13 E-value=1.3e+02 Score=21.88 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=30.7
Q ss_pred HHHHHhhcCCCCCEEEEEcCCCCcccCH-----------------------HHHHHHHhcCCcEEeecC
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSILPEENE-----------------------AVVNYALRKRDVKLVPTG 75 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~~~eENE-----------------------~vV~~~l~~~~~~l~~~~ 75 (90)
.+..+...|+|.-.+|.+|-+..+++-- .....+.+++++.+.|+.
T Consensus 81 Lf~rLk~~lp~~allIW~tt~Pv~~~~~ggfl~~~~~~~~~~lr~dv~eaN~~A~~va~~~~~dVlDLh 149 (183)
T cd01842 81 LFSKLDSVLPIECLIVWNTAMPVAEEIKGGFLLPELHDLSKSLRYDVLEGNFYSATLAKCYGFDVLDLH 149 (183)
T ss_pred HHHHHHhhCCCccEEEEecCCCCCcCCcCceeccccccccccchhHHHHHHHHHHHHHHHcCceeeehH
Confidence 4455556678999999999998664322 222344556788888863
No 299
>PRK10645 divalent-cation tolerance protein CutA; Provisional
Probab=23.08 E-value=1.7e+02 Score=19.43 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeecCCCCCCCCccccCC
Q psy7378 40 TGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYRQ 88 (90)
Q Consensus 40 pgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~~~~~g~dGf~~~~~ 88 (90)
|.-.+||.||+ ..++-+...+.++++.=.-.+.+-+ +..-+|.|.|
T Consensus 9 ~~~~lV~tT~p-~~e~A~~ia~~Lve~rLaACvni~p--~i~S~Y~W~G 54 (112)
T PRK10645 9 TDAVVVLCTAP-DEATAQDLAAKVLAEKLAACVTLLP--GATSLYYWEG 54 (112)
T ss_pred CCEEEEEEeCC-CHHHHHHHHHHHHHCCeeEEEecCC--CeeEEEEECC
Confidence 45578999886 3444566666666654122222211 2334566665
No 300
>KOG0681|consensus
Probab=22.58 E-value=1.3e+02 Score=25.96 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhcCCCCC-----EEEEEcCCCCcccCHHHHHHHH-hcCCcEEeecCCCCCCCCccccC
Q psy7378 23 SLIVILEAIDCLNARSPTGG-----YLVYSTCSILPEENEAVVNYAL-RKRDVKLVPTGLDFGTEGFVNYR 87 (90)
Q Consensus 23 Q~~Ll~~al~~~~~~lkpgG-----~lvYsTCS~~~eENE~vV~~~l-~~~~~~l~~~~~~~g~dGf~~~~ 87 (90)
+-+|.+++|+.+...|.+.| -|+..-|-.+|.---.....+| +.+|+.-+. +|-|+||+|.
T Consensus 93 Nwel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~----yGIDslfS~~ 159 (645)
T KOG0681|consen 93 NWELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVA----YGIDSLFSFY 159 (645)
T ss_pred cHHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCccee----echhhHHHHh
Confidence 45677777777778888887 6788888888866666666666 455654333 5778888876
No 301
>PRK00588 rnpA ribonuclease P; Reviewed
Probab=22.56 E-value=2.3e+02 Score=18.68 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhcCCCCCEEEE----EcCCCCcccCHHHHHHHHhc
Q psy7378 26 VILEAIDCLNARSPTGGYLVY----STCSILPEENEAVVNYALRK 66 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvY----sTCS~~~eENE~vV~~~l~~ 66 (90)
+|.+++....+.+++|..+|. ......-+|-++.+..++++
T Consensus 65 ~lRE~~R~~~~~l~~~~~vVviaR~~~~~~~~~~l~~~l~~ll~~ 109 (118)
T PRK00588 65 RLRHVARPILKELHPSDRVVIRALPSSRHVSSARLEQQLRCGLRR 109 (118)
T ss_pred HHHHHHHHhhhccCCCCEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence 556666666666777766776 34455555556666665543
No 302
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=22.46 E-value=2.3e+02 Score=19.57 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEcCCCCcccC---HHHHHHHHhcC
Q psy7378 26 VILEAIDCLNARSPTGGYLVYSTCSILPEEN---EAVVNYALRKR 67 (90)
Q Consensus 26 Ll~~al~~~~~~lkpgG~lvYsTCS~~~eEN---E~vV~~~l~~~ 67 (90)
+|.+++......++++..++.+-=+...... +..+..++++.
T Consensus 71 ~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k~ 115 (145)
T PRK04820 71 VLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRRA 115 (145)
T ss_pred HHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 5556666666667777777766555544444 44444455443
No 303
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=22.43 E-value=1.6e+02 Score=16.46 Aligned_cols=40 Identities=18% Similarity=0.041 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCc
Q psy7378 23 SLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDV 69 (90)
Q Consensus 23 Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~ 69 (90)
...|+..+.+.+. +.|..-++.+|+.. |.. ...+.++.+|
T Consensus 43 g~~L~~~~~~~~~---~~g~~~i~~~~~~~---n~~-~~~~~~k~Gf 82 (83)
T PF00583_consen 43 GSKLLQAAEEWAR---KRGIKRIYLDVSPD---NPA-ARRFYEKLGF 82 (83)
T ss_dssp HHHHHHHHHHHHH---HTTESEEEEEEETT---GHH-HHHHHHHTTE
T ss_pred chhhhhhhhhhHH---hcCccEEEEEEeCC---CHH-HHHHHHHcCC
Confidence 3457777777775 35788888888654 333 4445555554
No 304
>PRK08361 aspartate aminotransferase; Provisional
Probab=22.41 E-value=3.5e+02 Score=20.47 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHH--hhcCCC-CCEEEEEcCCCCcccCHHHHHHHHhcCCcEEee
Q psy7378 23 SLIVILEAIDCL--NARSPT-GGYLVYSTCSILPEENEAVVNYALRKRDVKLVP 73 (90)
Q Consensus 23 Q~~Ll~~al~~~--~~~lkp-gG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~ 73 (90)
.++++.+.|+.. .....| ||..+..+++-.....++.++++++++++.+.+
T Consensus 301 ~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~p 354 (391)
T PRK08361 301 RRKLVLKRLKEMPHIKVFEPKGAFYVFANIDETGMSSEDFAEWLLEKARVVVIP 354 (391)
T ss_pred HHHHHHHHHHhCCCCeecCCCEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcC
Confidence 345555566542 233445 566666666522223456666666667877655
No 305
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=22.18 E-value=2.9e+02 Score=20.95 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCE--EEEEcCCCCcccC-HHHHHHHH---hcCCcEEee
Q psy7378 20 GKTSLIVILEAIDCLNARSPTGGY--LVYSTCSILPEEN-EAVVNYAL---RKRDVKLVP 73 (90)
Q Consensus 20 ~~~Q~~Ll~~al~~~~~~lkpgG~--lvYsTCS~~~eEN-E~vV~~~l---~~~~~~l~~ 73 (90)
|.-|.+|+ ..++..+||+||. ++-=.-|+..-+. +.+-+.-+ .+.+|++.+
T Consensus 155 Qp~Qa~I~---~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e 211 (231)
T COG1889 155 QPNQAEIL---ADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILE 211 (231)
T ss_pred CchHHHHH---HHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeE
Confidence 45677775 5677789999994 4444566665555 34444233 334566654
No 306
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=22.13 E-value=1.9e+02 Score=20.24 Aligned_cols=46 Identities=15% Similarity=0.087 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHH
Q psy7378 18 TIGKTSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYA 63 (90)
Q Consensus 18 ~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~ 63 (90)
.+...|++.+..|.++.-+.-+.-.-+-..|.+++++.=+++++.+
T Consensus 96 avr~~h~q~~~lA~~al~~~p~~~R~~s~~T~~vs~~~~~ki~~~i 141 (171)
T PF14394_consen 96 AVRSYHKQMLELAQEALDRVPPEERDFSGLTMSVSREDYEKIKKEI 141 (171)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccceeeeEEEeCHHHHHHHHHHH
Confidence 3455666788888877755556677888889999987766665543
No 307
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=22.12 E-value=1.4e+02 Score=22.77 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=39.5
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEE--------EcCCCCcccCHHHHHHHHhcCCc
Q psy7378 8 DSTLALRALSTIGKTSLIVILEAIDCLNARSPTGGYLVY--------STCSILPEENEAVVNYALRKRDV 69 (90)
Q Consensus 8 ~~~~~~~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvY--------sTCS~~~eENE~vV~~~l~~~~~ 69 (90)
+.+..+++--.||.+|.+|...+.+.+. +.||...| .|=-+.+++.+.+++.+-..+++
T Consensus 16 T~t~~prRE~dlQ~lQsrLya~L~~~~~---~~ggl~Ff~RgDN~iavtNGI~~~~~~~i~e~I~n~~PV 82 (254)
T PRK02240 16 TVTPNPRRESDLQALQSRLYADLAQQFG---ARDGYVFFTRFDNMIAVTNGIDLEDHARIQESIRNRYPV 82 (254)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHHH---hCCCEEEeccCceEEEEcCCCCHHHHHHHHHHHHhcCCC
Confidence 3344556677888888888777666553 45776655 34457777778887777766555
No 308
>PRK08537 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=22.11 E-value=1.3e+02 Score=20.55 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=13.7
Q ss_pred hhcCCCCCEEEEEcCCCCc
Q psy7378 35 NARSPTGGYLVYSTCSILP 53 (90)
Q Consensus 35 ~~~lkpgG~lvYsTCS~~~ 53 (90)
.+.|+|||++||-|=.+.+
T Consensus 83 ~~~l~~~g~vi~n~~~~~~ 101 (177)
T PRK08537 83 LDDLKEGGTVIVDPDLVPI 101 (177)
T ss_pred HhccCCCeEEEEECCCCCc
Confidence 4567999999997644433
No 309
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=22.03 E-value=51 Score=23.43 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=18.3
Q ss_pred HHHHhhcCCCC--CEEEEEcCCCCcccCHHH
Q psy7378 31 IDCLNARSPTG--GYLVYSTCSILPEENEAV 59 (90)
Q Consensus 31 l~~~~~~lkpg--G~lvYsTCS~~~eENE~v 59 (90)
|+.+.+.++|| |+|+-.-.-+.+...+..
T Consensus 180 L~~~~~al~pg~~g~llI~e~~~~~~~~~~~ 210 (241)
T PF00891_consen 180 LRNAAAALKPGKDGRLLIIEMVLPDDRTGPP 210 (241)
T ss_dssp HHHHHHHSEECTTEEEEEEEEEECSSSSSHH
T ss_pred HHHHHHHhCCCCCCeEEEEeeccCCCCCCch
Confidence 44445557999 998887765555544443
No 310
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=21.92 E-value=1.9e+02 Score=21.98 Aligned_cols=40 Identities=18% Similarity=0.063 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCC
Q psy7378 11 LALRALSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 11 ~~~~~l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS 50 (90)
+-.+.+..+.+.|.+.+.+|-+.++.-+..+|++--=-|-
T Consensus 8 ~~~~~l~~l~~~~a~~i~kaa~lVAesi~n~g~i~~FG~G 47 (243)
T COG4821 8 KAIELLSELLDTQAENIKKAAKLVAESIMNDGRIYVFGSG 47 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEecCc
Confidence 4457889999999999999988888777877776444443
No 311
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=21.86 E-value=1.4e+02 Score=25.83 Aligned_cols=36 Identities=14% Similarity=-0.022 Sum_probs=27.3
Q ss_pred HHHHHhhcCCCCCEEEEEcCCC----CcccCHHHHHHHHh
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSI----LPEENEAVVNYALR 65 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~----~~eENE~vV~~~l~ 65 (90)
+++.++..|+.||+++|-|=+. ....|++.|+++-+
T Consensus 164 ~i~~aa~~L~~G~IVaipt~ggy~L~cda~n~~AV~rLr~ 203 (711)
T TIGR00143 164 ALLEAAKLLKKGKIIAIKGIGGFHLACDARNDEVVERLRL 203 (711)
T ss_pred HHHHHHHHHhCCCEEEEEcCCcceeecCCCCHHHHHHHHH
Confidence 4455566779999999999886 35678888888753
No 312
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=21.83 E-value=35 Score=21.39 Aligned_cols=22 Identities=14% Similarity=-0.001 Sum_probs=15.0
Q ss_pred HHHHHhhcCCCCCEEEEEcCCC
Q psy7378 30 AIDCLNARSPTGGYLVYSTCSI 51 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYsTCS~ 51 (90)
.++.++++++|+|+++-....-
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 3445556679999998765554
No 313
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=21.80 E-value=3.3e+02 Score=20.07 Aligned_cols=24 Identities=0% Similarity=-0.143 Sum_probs=16.9
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSIL 52 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~~ 52 (90)
+..+.+..+|+|||.++-.|=...
T Consensus 144 ~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 144 NYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred HHHHHHHHHhCCCcEEEEEEEecC
Confidence 345556677899999998875443
No 314
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=21.80 E-value=75 Score=21.53 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=14.9
Q ss_pred HHhhcCCCCCEEEEEcCCCCc
Q psy7378 33 CLNARSPTGGYLVYSTCSILP 53 (90)
Q Consensus 33 ~~~~~lkpgG~lvYsTCS~~~ 53 (90)
...+.|+|||++||-|=...+
T Consensus 71 ~~~~~l~~~g~vi~ns~~~~~ 91 (173)
T PF01558_consen 71 RHLKGLKPGGVVIINSSLVKP 91 (173)
T ss_dssp HCGTTCETTEEEEEETTT-CH
T ss_pred HHhcCcCcCeEEEEECCCCCc
Confidence 345678999999997744444
No 315
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=21.79 E-value=73 Score=21.22 Aligned_cols=16 Identities=25% Similarity=0.686 Sum_probs=12.3
Q ss_pred CCCCCCCCccccCCCC
Q psy7378 75 GLDFGTEGFVNYRQNK 90 (90)
Q Consensus 75 ~~~~g~dGf~~~~~~~ 90 (90)
+.+||.||.+++.-++
T Consensus 85 ~FPWG~DG~~e~~hn~ 100 (102)
T PLN02595 85 EFPWGPDGLFEVKHNK 100 (102)
T ss_pred CCCCCCCccccccccc
Confidence 3578999999987553
No 316
>KOG1107|consensus
Probab=21.65 E-value=83 Score=27.60 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=14.8
Q ss_pred HHHHHhhcCCC--CCEEEEEcCCCC
Q psy7378 30 AIDCLNARSPT--GGYLVYSTCSIL 52 (90)
Q Consensus 30 al~~~~~~lkp--gG~lvYsTCS~~ 52 (90)
+--+|+++||+ -|+-|| |||-.
T Consensus 619 ctl~asKLLKKPDQcRaVy-tcsHL 642 (760)
T KOG1107|consen 619 CTLYAAKLLKKPDQCRAVY-TCSHL 642 (760)
T ss_pred HHHHHHHhhcCCcceeeee-eeehh
Confidence 33455677776 678888 88843
No 317
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=21.30 E-value=4e+02 Score=21.39 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHH-hhcCCC-CCEEEEEcCCCCc-----c--cCHHHHHHHHhcCCcEEeecC
Q psy7378 23 SLIVILEAIDCL-NARSPT-GGYLVYSTCSILP-----E--ENEAVVNYALRKRDVKLVPTG 75 (90)
Q Consensus 23 Q~~Ll~~al~~~-~~~lkp-gG~lvYsTCS~~~-----e--ENE~vV~~~l~~~~~~l~~~~ 75 (90)
|++.|.+.|+.. .+.+.| ||.-||.-++=+. + -......+++.+.++...+.+
T Consensus 324 ~~~~l~~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~ 385 (460)
T PRK13238 324 QVEYLGEGLEEAGVPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIG 385 (460)
T ss_pred HHHHHHHHHHHCCCCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeeccc
Confidence 567777777553 667766 9999999997431 1 136677888888888887754
No 318
>PRK06824 translation initiation factor Sui1; Validated
Probab=21.20 E-value=57 Score=22.09 Aligned_cols=12 Identities=50% Similarity=0.443 Sum_probs=9.0
Q ss_pred CCCCEEEEEcCC
Q psy7378 39 PTGGYLVYSTCS 50 (90)
Q Consensus 39 kpgG~lvYsTCS 50 (90)
.+.+.|||||=.
T Consensus 4 ~~~~~lvySt~~ 15 (118)
T PRK06824 4 SALGGLVYSTEH 15 (118)
T ss_pred ccCCCEEEECCC
Confidence 467779999943
No 319
>PRK12937 short chain dehydrogenase; Provisional
Probab=21.09 E-value=2.1e+02 Score=19.52 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=14.9
Q ss_pred HHHHhhcCCCCCEEEEEcCCCC
Q psy7378 31 IDCLNARSPTGGYLVYSTCSIL 52 (90)
Q Consensus 31 l~~~~~~lkpgG~lvYsTCS~~ 52 (90)
++.+.+.++++|.+|+.+++..
T Consensus 122 ~~~~~~~~~~~~~iv~~ss~~~ 143 (245)
T PRK12937 122 LREAARHLGQGGRIINLSTSVI 143 (245)
T ss_pred HHHHHHHhccCcEEEEEeeccc
Confidence 3444455677899999987543
No 320
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=21.04 E-value=92 Score=25.69 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=15.3
Q ss_pred HHHHHhhcCCCCCEEEEE
Q psy7378 30 AIDCLNARSPTGGYLVYS 47 (90)
Q Consensus 30 al~~~~~~lkpgG~lvYs 47 (90)
-++.+|.++.|||.||.+
T Consensus 207 ~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 207 NIERLWNLLAPGGHLVIV 224 (484)
T ss_pred HHHHHHHhccCCCeEEEE
Confidence 467789999999999985
No 321
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=20.80 E-value=36 Score=25.48 Aligned_cols=42 Identities=29% Similarity=0.187 Sum_probs=26.5
Q ss_pred HHHHhhcCCCCCEEEEE-cCCCCcccCHHHHHHHHhcCCcEEeec
Q psy7378 31 IDCLNARSPTGGYLVYS-TCSILPEENEAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 31 l~~~~~~lkpgG~lvYs-TCS~~~eENE~vV~~~l~~~~~~l~~~ 74 (90)
+..|++.|||||.|..+ .+|=+. |.+.--+.+++.||++...
T Consensus 141 i~EA~RvLK~~G~L~IAEV~SRf~--~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 141 IREANRVLKPGGILKIAEVKSRFE--NVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp HHHHHHHEEEEEEEEEEEEGGG-S---HHHHHHHHHCTTEEEEEE
T ss_pred HHHHHheeccCcEEEEEEecccCc--CHHHHHHHHHHCCCeEEec
Confidence 45567888999988654 555544 4444445566778887664
No 322
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=20.53 E-value=2.6e+02 Score=22.73 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=30.5
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCCcccCHHHHHHHHhcCCcEEeecCCCCC
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFG 79 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~~~eENE~vV~~~l~~~~~~l~~~~~~~g 79 (90)
..++.+.+.|.||.++|=.+ +.++.+.+...+. +++.++..++.+...|
T Consensus 70 ~Vi~~l~~~l~~GdiiID~g-n~~~~~t~~~~~~-l~~~Gi~fvdapVSGG 118 (459)
T PRK09287 70 AVIEQLLPLLEKGDIIIDGG-NSNYKDTIRREKE-LAEKGIHFIGMGVSGG 118 (459)
T ss_pred HHHHHHHhcCCCCCEEEECC-CCCHHHHHHHHHH-HHhcCCeEEecCCCCC
Confidence 34455567778887766433 2456566666544 5667888988875543
No 323
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=20.36 E-value=2.9e+02 Score=20.40 Aligned_cols=32 Identities=13% Similarity=0.000 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEE
Q psy7378 16 LSTIGKTSLIVILEAIDCLNARSPTGGYLVYS 47 (90)
Q Consensus 16 l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYs 47 (90)
.++--+.|..|=.++.+++-..|+|-|+.|+.
T Consensus 119 ~arR~QvQErlT~qIA~al~~~L~p~GVaVvi 150 (195)
T COG0302 119 FARRLQVQERLTEQIADALQEILKPRGVAVVI 150 (195)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhcCcCceEEEE
Confidence 33445678888888999999999999999884
No 324
>PHA02888 hypothetical protein; Provisional
Probab=20.32 E-value=2.5e+02 Score=18.08 Aligned_cols=31 Identities=23% Similarity=0.524 Sum_probs=25.9
Q ss_pred CCEEEEEcCC---------CCcccCHHHHHHHHhcCCcEE
Q psy7378 41 GGYLVYSTCS---------ILPEENEAVVNYALRKRDVKL 71 (90)
Q Consensus 41 gG~lvYsTCS---------~~~eENE~vV~~~l~~~~~~l 71 (90)
+|...|.-|+ ++|.|=+.+-+|.|++|++-+
T Consensus 17 ng~cffgkc~nkk~~i~~~mt~~el~yiq~wllekhdlfi 56 (96)
T PHA02888 17 NGECFFGKCENKKLAIKKAMTPQELAYIQEWLLEKHDLFI 56 (96)
T ss_pred cceeeeeeccCcceeeecCCCHHHHHHHHHHHHhhcceeE
Confidence 7888888886 789999999999999997544
No 325
>PF12898 Stc1: Stc1 domain; InterPro: IPR024630 The domain contains 8 conserved cysteines that may bind to zinc. In S. pombe, proteins containing the domain act as protein linkers, which link the chromatin modifying CLRC complex to RNAi by tethering it to the RITS complex. This domain has a slightly different arrangement of its CxxC pairs from the LIM domain, hence it is not part of that family []. The tandem zinc-finger structure could mediate protein-protein interactions.
Probab=20.14 E-value=98 Score=19.32 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEcCC
Q psy7378 16 LSTIGKTSLIVILEAIDCLNARSPTGGYLVYSTCS 50 (90)
Q Consensus 16 l~~l~~~Q~~Ll~~al~~~~~~lkpgG~lvYsTCS 50 (90)
+..++..|++.+...+..- ...+..+.+.=-.||
T Consensus 11 ~~~FS~~Ql~~~~~~~~~~-~~~~~~~~i~C~~ct 44 (84)
T PF12898_consen 11 LSAFSKNQLEKLRKQIRAN-RVDPANSGIRCRECT 44 (84)
T ss_pred hHHcCHHHHHHHHHHHhhc-cCccCCCCCCCccCC
Confidence 6778888888888776553 223334444333444
No 326
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=20.09 E-value=69 Score=24.55 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCCCCEEEEEcCCCCcc-cC-HHHHHHHHhcCCcEEeec
Q psy7378 29 EAIDCLNARSPTGGYLVYSTCSILPE-EN-EAVVNYALRKRDVKLVPT 74 (90)
Q Consensus 29 ~al~~~~~~lkpgG~lvYsTCS~~~e-EN-E~vV~~~l~~~~~~l~~~ 74 (90)
+++..+....+|.-+.|++||...-. ++ +.+++.+-++.+..+.++
T Consensus 64 ~~i~~~~~~~~P~~i~v~~sC~~~iIGdD~~~v~~~~~~~~~~~vi~v 111 (398)
T PF00148_consen 64 EAIKEIAEKYKPKAIFVVTSCVPEIIGDDIEAVARELQEEYGIPVIPV 111 (398)
T ss_dssp HHHHHHHHHHSTSEEEEEE-HHHHHTTTTHHHHHHHHHHHHSSEEEEE
T ss_pred HHHHHHHhcCCCcEEEEECCCCHHHhCCCHHHHHHHhhcccCCcEEEE
Confidence 34444555568999999999975433 22 445555544556666665
No 327
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=20.09 E-value=2.6e+02 Score=20.67 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCcccCHHHHHHHHh
Q psy7378 41 GGYLVYSTCSILPEENEAVVNYALR 65 (90)
Q Consensus 41 gG~lvYsTCS~~~eENE~vV~~~l~ 65 (90)
+|.++=+.|.+.+.-..++++.+.+
T Consensus 302 ~~~il~~gc~i~~~~p~enl~a~v~ 326 (330)
T cd03465 302 GGYILSSGCEIPPDTPIENIKAMID 326 (330)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHH
Confidence 6777778899988888888877664
No 328
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=20.01 E-value=94 Score=22.11 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=14.1
Q ss_pred HHHHHHHHhhcCCCC-CEEEEEcCC
Q psy7378 27 ILEAIDCLNARSPTG-GYLVYSTCS 50 (90)
Q Consensus 27 l~~al~~~~~~lkpg-G~lvYsTCS 50 (90)
|.+|++... +.| |+|||-.+.
T Consensus 68 L~~al~~i~---~~G~GVlVyL~~~ 89 (191)
T TIGR00505 68 LEAALKQIA---EEGRGVLIYLRQE 89 (191)
T ss_pred HHHHHHHHH---hcCCEEEEEECCC
Confidence 455666544 456 999998764
Done!