RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7378
(90 letters)
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 84.9 bits (211), Expect = 1e-21
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 27 ILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNY 86
+ + ++ L GG LVYSTCS+ PEENE V+ +AL DV+L+P L +G N
Sbjct: 229 LEKGLEVLK----PGGILVYSTCSLEPEENEFVIQWALDNFDVELLP--LKYGEPALTNP 282
Query: 87 RQNK 90
+
Sbjct: 283 FGIE 286
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 83.9 bits (208), Expect = 7e-21
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 27 ILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFGTEGFV 84
+ AI L G L+YSTC+ PEENE ++++ + V + L
Sbjct: 217 LSSAIKMLK----NKGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIPLTQSVSSGR 270
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 80.8 bits (200), Expect = 4e-20
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 36 ARSPTGGYLVYSTCSILPEENEAVVNYALRKR--DVKLVPTGLDFGTEGFVNYRQNK 90
P+ LVYSTCS+ EENE VV AL++ +L P + G + +
Sbjct: 222 LTFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAE 278
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 80.8 bits (200), Expect = 7e-20
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 27 ILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR-DVKLVPTGL-DFGTEGFV 84
+ +A L GG LVYSTC+ PEENE VV + L+ + +L L G
Sbjct: 212 LAQASRLLG----PGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLEDARLHPLFAPGVP 267
Query: 85 NYRQ 88
+ +
Sbjct: 268 EWGE 271
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 78.6 bits (194), Expect = 6e-19
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 27 ILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRD--VKLVPTGLDFGTEGF 83
I A L GG LVYSTC++ EENEAV + V+ +P G F
Sbjct: 229 IDSAFHALR----PGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFPGANK 283
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 75.7 bits (187), Expect = 2e-18
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 27 ILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKR-DVKLVPTGLD 77
I ID L G LVYSTCS+ EENE V+ Y L+KR DV+L+ +
Sbjct: 194 IDIGIDLLK----KDGELVYSTCSMEVEENEEVIKYILQKRNDVELIIIKAN 241
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 60.8 bits (148), Expect = 1e-12
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 41 GGYLVYSTCSILPEENEAVVNYALRKR-DVKLVPTGLDFGTEGFVNYRQ 88
GG L+Y+TCSI EENE + + L + KLVP + +
Sbjct: 382 GGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLVPLKSPYDPGFLEGTMR 430
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 59.5 bits (145), Expect = 3e-12
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 41 GGYLVYSTCSILPEENEAVVNYALRKR-DVKLVPTGL-----------DFGTEGF 83
GG LVY+TCS+LPEEN + L++ D +L TG +GF
Sbjct: 367 GGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGF 421
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum}
SCOP: c.67.1.1
Length = 388
Score = 33.6 bits (78), Expect = 0.003
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 28 LEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFGTEGFV 84
L A+ L P G + ++ + + + + L + V VP G FG + +
Sbjct: 307 LNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVP-GAAFGADDCI 362
>3nra_A Aspartate aminotransferase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Length = 407
Score = 29.1 bits (66), Expect = 0.14
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 28 LEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFG--TEGFV 84
L + + AR+P G ++ L V + V + P G +F T V
Sbjct: 323 LRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTP-GTEFSPHTADSV 380
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 483
Score = 29.0 bits (65), Expect = 0.15
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 29 EAIDCLNARSPTGGYLVYSTC--SILPEENEAVVNYALRKRDVKLVPTGLDFGTEGFV 84
AI VY+TC +++ ++ +AV A + ++P + GF
Sbjct: 112 HAIRQAVESYSPPAVFVYNTCVPALIGDDVDAVCKAAAERFGTPVIP----VDSAGFY 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.21
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 15/49 (30%)
Query: 29 EAID-CLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGL 76
I+ LN P ++ S+ P +PT L
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPP-------------SAH-IPTIL 391
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM
CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 533
Score = 28.4 bits (63), Expect = 0.25
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 29 EAIDCLNARSPTGGYLVYSTCS--ILPEENEAVVNYALRKRDVKLVPTGLDFGTEGFV 84
+AI VY+TC ++ ++ AV A ++ + + F EG+
Sbjct: 124 DAIHEAYEMFHPAAIGVYATCPVGLIGDDILAVAATASKEIGIPVHA----FSCEGYK 177
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane
bound, thiazolidinedione, oxidative stres endoplasmic
reticulum, membrane; 2.10A {Homo sapiens}
Length = 83
Score = 27.0 bits (59), Expect = 0.44
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 42 GYLVYSTCSILPEENEAVVNYALRKRDVKLVPT 74
G + ++ ++++N ++K + K+V
Sbjct: 1 GSHMRPFLPKKKQQKDSLINLKIQKENPKVVNE 33
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase,
DPOR, (bacterio)chlorophyll biosynthesis,
photosynthesis; 2.40A {Thermosynechococcus elongatus}
Length = 511
Score = 27.5 bits (61), Expect = 0.57
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Query: 29 EAIDCLNARSPTGGYLVYSTC--SILPEENEAVVNYALRKRDVKLVPTGLDFGTEGFV 84
+ I + ++ TC SIL E+ + V A ++ +
Sbjct: 78 DNIIRKDTEEHPDLIVLTPTCTSSILQEDLQNFVRRASLSTTADVLL----ADVNHYR 131
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9
c.66.1.51 PDB: 3ldf_A*
Length = 385
Score = 26.8 bits (60), Expect = 0.96
Identities = 6/49 (12%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 26 VILEAIDCLNARSPTGGYLVYSTCS--ILPEENEAVVNYALRKRDVKLV 72
+I + ++ L+ G ++ ST + + + + + K+ +
Sbjct: 313 LIRQGLEILSE----NGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYL 357
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 3.0
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 4/17 (23%)
Query: 5 YPLDST--LALRALSTI 19
Y DS LA++A T+
Sbjct: 32 YADDSAPALAIKA--TM 46
>2xx6_A SPBC2 prophage-derived deoxyuridine 5'-triphospha
nucleotidohydrolase YOSS; 1.74A {Bacillus subtilis}
PDB: 2baz_A 2xy3_A* 2y1t_A* 2xcd_A 2xce_A*
Length = 142
Score = 24.9 bits (55), Expect = 3.5
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 58 AVVNYALRKRDVKLVPTGLDF----GTEGFV 84
A + A++K + KLVP G+ G E V
Sbjct: 28 AAEDVAIKKDEFKLVPLGVAMELPEGYEAHV 58
>3ecy_A CG4584-PA, isoform A (bcDNA.LD08534); jelly-roll, dimeric
assembly, hydrolase; 1.88A {Drosophila melanogaster}
Length = 160
Score = 24.5 bits (54), Expect = 4.6
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 58 AVVNYALRKRDVKLVPTGLDF----GTEGFV 84
+ + + R +V T L G+ G V
Sbjct: 48 SAYDVVVPARGKAIVKTDLQVQVPEGSYGRV 78
>3ara_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; magnesium
binding, hydrolase-hydrolase inhibitor; HET: MKH; 1.70A
{Homo sapiens} PDB: 2hqu_A* 3arn_A* 3ehw_A* 1q5h_A*
1q5u_X
Length = 164
Score = 24.5 bits (54), Expect = 5.1
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 58 AVVNYALRKRDVKLVPTGLDF----GTEGFV 84
+ +Y + + +V T + G G V
Sbjct: 52 SAYDYTIPPMEKAVVKTDIQIALPSGCYGRV 82
>2ol1_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; fold,
jelly-roll, superfamily, dutpase-like; HET: UMP; 1.80A
{Vaccinia virus} PDB: 2oke_A* 2okd_A* 2ol0_A* 2okb_A
Length = 147
Score = 24.1 bits (53), Expect = 6.2
Identities = 4/31 (12%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 58 AVVNYALRKRDVKLVPTGLDF----GTEGFV 84
+ +Y + + +L+ T + G +
Sbjct: 36 SAYDYTIPPGERQLIKTDISMSMPKFCYGRI 66
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation,
transferase; HET: ATP; 3.00A {Geobacillus
stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB:
1miv_A* 1miy_A*
Length = 404
Score = 24.6 bits (54), Expect = 6.2
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 8/33 (24%)
Query: 48 TCSILPEENEAVVNYALRKRDVKLVPTGLDFGT 80
S LPE+ A+ K + G GT
Sbjct: 44 ATSALPEDVMAIFP--------KTIDVGSKHGT 68
>3so2_A Putative uncharacterized protein; deoxyuridine triphosphatase,
dutpase, cancer MARK hydrolase; 1.64A {Chlorella
variabilis}
Length = 146
Score = 24.0 bits (53), Expect = 6.5
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 58 AVVNYALRKRDVKLVPTGLDF----GTEGFV 84
+ + + R +V TGL GT V
Sbjct: 33 SCEDTEVPARGRAVVKTGLQIAIPPGTYARV 63
>3f4f_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; trimer, beta
barrel, UMP, product complex, DUTP pyrophosphat DITP;
HET: UMP; 2.00A {Saccharomyces cerevisiae} PDB: 3hhq_A
Length = 167
Score = 24.2 bits (53), Expect = 6.8
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 58 AVVNYALRKRDVKLVPTGLDF----GTEGFV 84
A + + +V T + F GT G +
Sbjct: 55 ASQDITIPAMGQGMVSTDISFTVPVGTYGRI 85
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 24.2 bits (53), Expect = 7.6
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 26 VILEAIDCLNARSPTGGYLVYSTCS--ILPEENEAVVNYALR--KRDVKLV 72
++ EA+ L G+L S+CS + E+ V A R +++
Sbjct: 308 LVREALRLLAE----EGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVH 354
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 24.3 bits (53), Expect = 7.7
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 6 PLDSTLALRALSTIGKTSLI--VILEAIDCLNARSP 39
PL LA+R + I + + CL P
Sbjct: 100 PLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDP 135
>3ca9_A Deoxyuridine triphosphatase; dutpase chlorella virus, hydrolase;
HET: DUD; 3.00A {Paramecium bursaria chlorella
VIRUSIL3A}
Length = 165
Score = 24.1 bits (53), Expect = 7.8
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 58 AVVNYALRKRDVKLVPTGLDF----GTEGFV 84
+V + + V TG+ GT G +
Sbjct: 46 SVEDVVVPAMGRIAVSTGISIRVPDGTYGRI 76
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 24.3 bits (52), Expect = 7.9
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 6 PLDSTLALRALSTIGKTSLIVILEAI--DCLNARSP 39
A+RAL I ++++ +E + + P
Sbjct: 118 DSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVP 153
>3p48_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; trimer, beta
barrel, DUMPPNP pyrophosphatase, phosphoprotein,
structural genomics; HET: DUP; 1.67A {Saccharomyces
cerevisiae}
Length = 147
Score = 23.7 bits (52), Expect = 8.0
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 58 AVVNYALRKRDVKLVPTGLDF----GTEGFV 84
A + + +V T + F GT G +
Sbjct: 35 ASQDITIPAMGQGMVSTDISFTVPVGTYGRI 65
>2p9o_A DUTP pyrophosphatase-like protein; dutpase, magnesium binding,
hydrolase; 2.00A {Arabidopsis thaliana} PDB: 2pc5_A
Length = 169
Score = 23.8 bits (52), Expect = 9.1
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 58 AVVNYALRKRDVKLVPTGLDF----GTEGFV 84
+ V+ + R L+PT L GT +
Sbjct: 58 SAVDSKVPARGKALIPTDLSIAVPEGTYARI 88
>1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein,
hydrolase; 1.40A {Feline immunodeficiency virus} SCOP:
b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A*
1f7r_A* 1dut_A
Length = 136
Score = 23.7 bits (52), Expect = 9.1
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 58 AVVNYALRKRDVKLVPTGLDF----GTEGFV 84
A L +VK++PTG+ G G +
Sbjct: 22 AAKEIHLLPGEVKVIPTGVKLMLPKGYWGLI 52
>3c2t_A Deoxyuridine triphosphatase; dutpase chlorella virus, hydrolase;
HET: DUD; 3.00A {Paramecium bursaria chlorella
VIRUSIL3A} PDB: 3c3i_A*
Length = 141
Score = 23.6 bits (52), Expect = 9.8
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 58 AVVNYALRKRDVKLVPTGLDF----GTEGFV 84
+V + + V TG+ GT G +
Sbjct: 30 SVEDVVVPAMGRIAVSTGISIRVPDGTYGRI 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.397
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,363,831
Number of extensions: 67607
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 39
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)