RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7378
(90 letters)
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 56.3 bits (134), Expect = 1e-11
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 12/57 (21%)
Query: 39 PTGGYLVYSTCSILPEENEAVVNYALRKR-DVKLVPTGLDF-----------GTEGF 83
TGG LVY+TCS+LPEEN + L++ D +L TG +GF
Sbjct: 221 KTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGF 277
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 52.7 bits (125), Expect = 3e-10
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 39 PTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFGTEGFVNYR 87
GG LVYSTCS+ PEENE V+ +AL DV+L+P L +G N
Sbjct: 235 KPGGILVYSTCSLEPEENEFVIQWALDNFDVELLP--LKYGEPALTNPF 281
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 48.9 bits (115), Expect = 6e-09
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 24 LIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRD--VKLVPTGLDFGTE 81
L + C P+ LVYSTCS+ EENE VV AL++ +L P +
Sbjct: 202 LAGFQQRALCHALTFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPAWPHR 261
Query: 82 GFVNY 86
G +
Sbjct: 262 GLSTF 266
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium
lapideum [TaxId: 32060]}
Length = 388
Score = 39.0 bits (90), Expect = 2e-05
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 24 LIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFGTEGF 83
++ L A+ L P G + ++ + + + + L + V VP G FG +
Sbjct: 303 MLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVP-GAAFGADDC 361
Query: 84 V 84
+
Sbjct: 362 I 362
>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}
Length = 394
Score = 35.2 bits (79), Expect = 4e-04
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 32 DCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFGTEG 82
+ A G YL + L +++A+ + + K + G FG G
Sbjct: 315 PEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDE-GYIFGDGG 364
>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 395
Score = 34.9 bits (79), Expect = 6e-04
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 24 LIVILEAIDCLNARSPTGGYLVYSTCSILPEEN-EAVVNYALRKRDVKLVPTGLDFGTEG 82
+ L I ++ P G + ++ + P +N + V L V V G FG G
Sbjct: 308 IYKRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVH-GSGFGEYG 366
>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY
{Escherichia coli [TaxId: 562]}
Length = 361
Score = 31.4 bits (69), Expect = 0.008
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 41 GGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFGTEG 82
YL + L ++ A+ + + V ++P G +G EG
Sbjct: 291 STYLAWLDLRPLNIDDNALQKALIEQEKVAIMP-GYTYGEEG 331
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 30.6 bits (68), Expect = 0.017
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 41 GGYLVYSTCS--ILPEENEAVVNYALR--KRDVKLVPT---GLDF 78
GG L ++CS + A+V A + R +++V D
Sbjct: 254 GGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVEKRGQPFDH 298
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 29.8 bits (66), Expect = 0.030
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 39 PTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVPTGLDFGTEG 82
P G + ++ ++ L++ V +VP G FG G
Sbjct: 314 PKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVP-GSAFGKAG 356
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
and C-terminal domains {Streptococcus mutans [TaxId:
1309]}
Length = 317
Score = 28.3 bits (62), Expect = 0.11
Identities = 9/85 (10%), Positives = 24/85 (28%), Gaps = 9/85 (10%)
Query: 3 NWYPLDSTLALRALSTIGKTSLIVILEAIDCLNARSPT----GGYLVYSTCS--ILPEEN 56
+ D + K + + + L + G ++ ST + + +
Sbjct: 214 HHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQF 273
Query: 57 EAVVNYALRKRDVKLVPT---GLDF 78
+ + K+ + DF
Sbjct: 274 KKQIEKGFGKQKHTYLDLQQLPSDF 298
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 27.9 bits (61), Expect = 0.14
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 41 GGYLVYSTCS--ILPEENEAVVNYALRK--RDVKLV 72
GG LV +CS + + + ++ A K + +K++
Sbjct: 256 GGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKML 291
>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase
I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}
Length = 418
Score = 26.7 bits (57), Expect = 0.47
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 27 ILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVP 73
L A+ A SP Y+ P +A+ + D + P
Sbjct: 44 ALNAL-AAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINP 89
>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga
maritima [TaxId: 2336]}
Length = 420
Score = 24.7 bits (52), Expect = 2.1
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 36 ARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVKLVP 73
L YST P + ++ R + +
Sbjct: 66 IEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLD 103
>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT)
{Trypanosoma cruzi [TaxId: 5693]}
Length = 412
Score = 24.4 bits (51), Expect = 2.6
Identities = 10/49 (20%), Positives = 14/49 (28%)
Query: 22 TSLIVILEAIDCLNARSPTGGYLVYSTCSILPEENEAVVNYALRKRDVK 70
+L+ I L + Y PE EAV + K
Sbjct: 44 KNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHK 92
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 23.2 bits (49), Expect = 7.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 52 LPEENEAVVNYALRKR 67
L NEA V + LR+R
Sbjct: 13 LTCLNEASVLHNLRER 28
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 23.2 bits (49), Expect = 7.2
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 6 PLDSTLALRALSTIGKTSLI--VILEAIDCLNARSP 39
PL LA+R + I + + CL P
Sbjct: 97 PLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDP 132
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 23.1 bits (49), Expect = 7.5
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 52 LPEENEAVVNYALRKR 67
+ NEA V Y LR R
Sbjct: 43 MTYLNEASVLYNLRSR 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.397
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 323,930
Number of extensions: 12215
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 21
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)