BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7379
(465 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 92 DNNTLWALINFTQPGYDKLKPTLTYS-----IRMSTALIGDTYISDRFYTLDPRSRPLYD 146
D NTL T+ G+ L P +T++ +R+ + D + D Y DP +D
Sbjct: 358 DMNTLRHGYPTTENGF-SLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEG---HD 413
Query: 147 LKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQ 181
++ + G +++ Q + E TGRE +PG+ Q
Sbjct: 414 MRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQ 448
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 92 DNNTLWALINFTQPGYDKLKPTLTYS-----IRMSTALIGDTYISDRFYTLDPRSRPLYD 146
D NTL T+ G+ L P +T++ +R+ + D + D Y DP +D
Sbjct: 358 DMNTLRHGYPTTENGF-SLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEG---HD 413
Query: 147 LKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQ 181
++ + G +++ Q + E TGRE +PG+ Q
Sbjct: 414 MRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQ 448
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 92 DNNTLWALINFTQPGYDKLKPTLTYS-----IRMSTALIGDTYISDRFYTLDPRSRPLYD 146
D NTL T+ G+ L P +T++ +R+ + D + D Y DP +D
Sbjct: 358 DMNTLRHGYPTTENGF-SLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEG---HD 413
Query: 147 LKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQ 181
++ + G +++ Q + E TGRE +PG+ Q
Sbjct: 414 MRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQ 448
>pdb|4ANV|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 20 RSVGNQSQ-TYNAALNFFDSFFSDQNLTS----SLNFLNDTQESMQYVVQLLQCIDFNKI 74
R V +QS + D FSD+N+ + L L D + + Y++QL+Q + F
Sbjct: 476 REVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLED-DDVLHYLLQLVQAVKFE-- 532
Query: 75 VPYNDSATA 83
PY+DSA A
Sbjct: 533 -PYHDSALA 540
>pdb|4ANU|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors.
pdb|4ANW|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 20 RSVGNQSQ-TYNAALNFFDSFFSDQNLTS----SLNFLNDTQESMQYVVQLLQCIDFNKI 74
R V +QS + D FSD+N+ + L L D + + Y++QL+Q + F
Sbjct: 476 REVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLED-DDVLHYLLQLVQAVKFE-- 532
Query: 75 VPYNDSATA 83
PY+DSA A
Sbjct: 533 -PYHDSALA 540
>pdb|3APC|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5132799
pdb|3APD|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5108134
pdb|3APF|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5039699
Length = 966
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 20 RSVGNQSQ-TYNAALNFFDSFFSDQNLTS----SLNFLNDTQESMQYVVQLLQCIDFNKI 74
R V +QS + D FSD+N+ + L L D + + Y++QL+Q + F
Sbjct: 478 REVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLED-DDVLHYLLQLVQAVKFE-- 534
Query: 75 VPYNDSATA 83
PY+DSA A
Sbjct: 535 -PYHDSALA 542
>pdb|1E8X|A Chain A, Structural Insights Into Phoshoinositide 3-Kinase
Enzymatic Mechanism And Signalling
pdb|1E90|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E7V|A Chain A, Structure Determinants Of Phosphoinositide 3-kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8W|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 961
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 20 RSVGNQSQ-TYNAALNFFDSFFSDQNLTS----SLNFLNDTQESMQYVVQLLQCIDFNKI 74
R V +QS + D FSD+N+ + L L D + + Y++QL+Q + F
Sbjct: 473 REVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLED-DDVLHYLLQLVQAVKFE-- 529
Query: 75 VPYNDSATA 83
PY+DSA A
Sbjct: 530 -PYHDSALA 537
>pdb|1E7U|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 961
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 20 RSVGNQSQ-TYNAALNFFDSFFSDQNLTS----SLNFLNDTQESMQYVVQLLQCIDFNKI 74
R V +QS + D FSD+N+ + L L D + + Y++QL+Q + F
Sbjct: 473 REVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLED-DDVLHYLLQLVQAVKFE-- 529
Query: 75 VPYNDSATA 83
PY+DSA A
Sbjct: 530 -PYHDSALA 537
>pdb|4ANX|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 20 RSVGNQSQ-TYNAALNFFDSFFSDQNLTS----SLNFLNDTQESMQYVVQLLQCIDFNKI 74
R V +QS + D FSD+N+ + L L D + + Y++QL+Q + F
Sbjct: 476 REVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLED-DDVLHYLLQLVQAVKFE-- 532
Query: 75 VPYNDSATA 83
PY+DSA A
Sbjct: 533 -PYHDSALA 540
>pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8Z|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|2A4Z|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With
As604850
pdb|2A5U|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With
As605240
pdb|2CHW|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110 Alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-39
pdb|2CHX|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-90
pdb|2CHZ|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-93
pdb|3DPD|A Chain A, Achieving Multi-Isoform Pi3k Inhibition In A Series Of
Substituted 3,4-Dihydro-2h-Benzo[1,4]oxazines
pdb|2V4L|A Chain A, Complex Of Human Phosphoinositide 3-kinase Catalytic
Subunit Gamma (p110 Gamma) With Pik-284
pdb|3IBE|A Chain A, Crystal Structure Of A Pyrazolopyrimidine Inhibitor Bound
To Pi3 Kinase Gamma
pdb|3LJ3|A Chain A, Pi3-Kinase-Gamma With A Pyrrolopyridine-Benzofuran
Inhibitor
pdb|3ML8|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR
PF-0 Through Structure Based Drug Design
pdb|3ML9|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR
PF-0 Through Structure Based Drug Design
pdb|3MJW|A Chain A, Pi3 Kinase Gamma With A Benzofuranone Inhibitor
pdb|3P2B|A Chain A, Crystal Structure Of Pi3k Gamma With
3-(2-Morpholino-6-(Pyridin-3-
Ylamino)pyrimidin-4-Yl)phenol
pdb|3SD5|A Chain A, Crystal Structure Of Pi3k Gamma With
5-(2,4-Dimorpholinopyrimidin-6-
Yl)-4-(Trifluoromethyl)pyridin-2-Amine
pdb|3TJP|A Chain A, Crystal Structure Of Pi3k Gamma With
N6-(3,4-Dimethoxyphenyl)-2-
Morpholino-[4,5'-Bipyrimidine]-2',6-Diamine
pdb|4FUL|A Chain A, Pi3 Kinase Gamma Bound To A Pyrmidine Inhibitor
Length = 966
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 20 RSVGNQSQ-TYNAALNFFDSFFSDQNLTS----SLNFLNDTQESMQYVVQLLQCIDFNKI 74
R V +QS + D FSD+N+ + L L D + + Y++QL+Q + F
Sbjct: 472 REVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLED-DDVLHYLLQLVQAVKFE-- 528
Query: 75 VPYNDSATA 83
PY+DSA A
Sbjct: 529 -PYHDSALA 536
>pdb|1HE8|A Chain A, Ras G12v-Pi 3-Kinase Gamma Complex
Length = 965
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 20 RSVGNQSQ-TYNAALNFFDSFFSDQNLTS----SLNFLNDTQESMQYVVQLLQCIDFNKI 74
R V +QS + D FSD+N+ + L L D + + Y++QL+Q + F
Sbjct: 471 REVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLED-DDVLHYLLQLVQAVKFE-- 527
Query: 75 VPYNDSATA 83
PY+DSA A
Sbjct: 528 -PYHDSALA 535
>pdb|3L54|A Chain A, Structure Of Pi3k Gamma With Inhibitor
Length = 966
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 20 RSVGNQSQ-TYNAALNFFDSFFSDQNLTS----SLNFLNDTQESMQYVVQLLQCIDFNKI 74
R V +QS + D FSD+N+ + L L D + + Y++QL+Q + F
Sbjct: 472 REVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLED-DDVLHYLLQLVQAVKFE-- 528
Query: 75 VPYNDSATA 83
PY+DSA A
Sbjct: 529 -PYHDSALA 536
>pdb|3ENE|A Chain A, Complex Of Pi3k Gamma With An Inhibitor
Length = 959
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 20 RSVGNQSQ-TYNAALNFFDSFFSDQNLTS----SLNFLNDTQESMQYVVQLLQCIDFNKI 74
R V +QS + D FSD+N+ + L L D + + Y++QL+Q + F
Sbjct: 471 REVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLED-DDVLHYLLQLVQAVKFE-- 527
Query: 75 VPYNDSATA 83
PY+DSA A
Sbjct: 528 -PYHDSALA 535
>pdb|3DBS|A Chain A, Structure Of Pi3k Gamma In Complex With Gdc0941
pdb|3L13|A Chain A, Crystal Structures Of Pan-Pi3-Kinase And Dual
Pan-Pi3-KinaseMTOR Inhibitors
pdb|4AOF|A Chain A, Selective Small Molecule Inhibitor Discovered By
Chemoproteomic Assay Platform Reveals Regulation Of Th17
Cell Differentiation By Pi3kgamma
Length = 960
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 20 RSVGNQSQ-TYNAALNFFDSFFSDQNLTS----SLNFLNDTQESMQYVVQLLQCIDFNKI 74
R V +QS + D FSD+N+ + L L D + + Y++QL+Q + F
Sbjct: 472 REVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLED-DDVLHYLLQLVQAVKFE-- 528
Query: 75 VPYNDSATA 83
PY+DSA A
Sbjct: 529 -PYHDSALA 536
>pdb|3CST|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor E5e2
pdb|3CSF|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor Dw2
pdb|3L16|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE
TREATMENT OF CANCER
pdb|3L17|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE
TREATMENT OF CANCER
pdb|3L08|A Chain A, Structure Of Pi3k Gamma With A Potent Inhibitor:
Gsk2126458
pdb|3OAW|A Chain A, 4-Methylpteridineones As Orally Active And Selective
Pi3kMTOR DUAL Inhibitors
pdb|3PRE|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PRZ|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PS6|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3R7Q|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3- Kinase
pdb|3R7R|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3-Kinase
pdb|3ZVV|A Chain A, Fragment Bound To Pi3kinase Gamma
pdb|3ZW3|A Chain A, Fragment Based Discovery Of A Novel And Selective Pi3
Kinase Inhibitor
pdb|3TL5|A Chain A, Discovery Of Gdc-0980: A Potent, Selective, And Orally
Available Class I Phosphatidylinositol 3-Kinase
(Pi3k)MAMMALIAN TARGET OF RAPAMYCIN (Mtor) Kinase
Inhibitor For The Treatment Of Cancer
pdb|3T8M|A Chain A, Rational Design Of Pi3k-Alpha Inhibitors That Exhibit
Selectivity Over The Pi3k-Beta Isoform
pdb|4GB9|A Chain A, Potent And Highly Selective Benzimidazole Inhibitors Of
Pi3k-Delta
pdb|4G11|A Chain A, X-Ray Structure Of Pi3k-Gamma Bound To A
4-(Morpholin-4-Yl)- (6-Oxo-1,
6-Dihydropyrimidin-2-Yl)amide Inhibitor
pdb|4HLE|A Chain A, Compound 21 (1-alkyl-substituted 1,2,4-triazoles)
Length = 966
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 20 RSVGNQSQ-TYNAALNFFDSFFSDQNLTS----SLNFLNDTQESMQYVVQLLQCIDFNKI 74
R V +QS + D FSD+N+ + L L D + + Y++QL+Q + F
Sbjct: 472 REVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLED-DDVLHYLLQLVQAVKFE-- 528
Query: 75 VPYNDSATA 83
PY+DSA A
Sbjct: 529 -PYHDSALA 536
>pdb|3QAQ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 1
pdb|3QAR|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 32
pdb|3QJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 1
pdb|3QK0|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 82
pdb|3S2A|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With A
Quinoline Inhibitor
pdb|4FHJ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Imidazopyridine 2
pdb|4F1S|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine-Sulfonamide Inhibitor
pdb|4FLH|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Amg511
pdb|4FJY|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Quinoline-Indoline Inhibitor 24f
pdb|4FJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Pyrrolo-Pyridine Inhibitor 63
Length = 960
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 20 RSVGNQSQ-TYNAALNFFDSFFSDQNLTS----SLNFLNDTQESMQYVVQLLQCIDFNKI 74
R V +QS + D FSD+N+ + L L D + + Y++QL+Q + F
Sbjct: 472 REVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLED-DDVLHYLLQLVQAVKFE-- 528
Query: 75 VPYNDSATA 83
PY+DSA A
Sbjct: 529 -PYHDSALA 536
>pdb|3NZS|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
pdb|3NZU|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
Length = 954
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 20 RSVGNQSQ-TYNAALNFFDSFFSDQNLTS----SLNFLNDTQESMQYVVQLLQCIDFNKI 74
R V +QS + D FSD+N+ + L L D + + Y++QL+Q + F
Sbjct: 468 REVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLED-DDVLHYLLQLVQAVKFE-- 524
Query: 75 VPYNDSATA 83
PY+DSA A
Sbjct: 525 -PYHDSALA 532
>pdb|4DK5|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine Inhibitor
Length = 959
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 20 RSVGNQSQ-TYNAALNFFDSFFSDQNLTS----SLNFLNDTQESMQYVVQLLQCIDFNKI 74
R V +QS + D FSD+N+ + L L D + + Y++QL+Q + F
Sbjct: 471 REVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLED-DDVLHYLLQLVQAVKFE-- 527
Query: 75 VPYNDSATA 83
PY+DSA A
Sbjct: 528 -PYHDSALA 535
>pdb|3PDY|A Chain A, Structure Of The Third And Fourth Spectrin Repeats Of The
Plakin Domain Of Plectin
pdb|3PDY|B Chain B, Structure Of The Third And Fourth Spectrin Repeats Of The
Plakin Domain Of Plectin
Length = 210
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 376 NIHKISGSEVTYVLPQDPASMGAYVSLFESLSENRAKL 413
N H++ G+E LP A +G++ L +S+ E RAK+
Sbjct: 24 NQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKI 61
>pdb|4GZ9|A Chain A, Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2b1b2)
pdb|4GZA|H Chain H, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
Length = 577
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 408 ENRAKLGIDSYGISDTSLEEKWGSLQLGRKLWLFVGNVSYKKVCLG 453
E + K + +Y + +S E W SL+ G K +F GN + V LG
Sbjct: 330 ETKKKYYVKTYRVDISSNGEDWISLKEGNKAIIFQGNTNPTDVVLG 375
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,189,238
Number of Sequences: 62578
Number of extensions: 518791
Number of successful extensions: 993
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 991
Number of HSP's gapped (non-prelim): 21
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)