Query psy7379
Match_columns 465
No_of_seqs 379 out of 1308
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 16:43:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01257 rim_protein retinal- 100.0 4.7E-64 1E-68 586.6 31.1 389 11-399 457-871 (2272)
2 TIGR01257 rim_protein retinal- 99.4 2.4E-12 5.3E-17 153.5 18.1 156 154-309 1627-1793(2272)
3 PF12698 ABC2_membrane_3: ABC- 99.3 4.6E-12 1E-16 126.4 5.5 207 74-316 60-278 (344)
4 KOG0059|consensus 99.1 1.3E-09 2.8E-14 123.8 17.0 156 153-312 255-411 (885)
5 KOG0059|consensus 98.4 2.9E-07 6.3E-12 104.8 5.4 108 321-441 774-883 (885)
6 TIGR03518 ABC_perm_GldF glidin 97.3 0.0085 1.8E-07 58.1 15.2 104 216-319 69-179 (240)
7 TIGR01247 drrB daunorubicin re 97.1 0.022 4.7E-07 54.6 15.2 113 200-313 50-163 (236)
8 TIGR00025 Mtu_efflux ABC trans 96.8 0.064 1.4E-06 51.4 15.9 108 200-307 39-146 (232)
9 TIGR01291 nodJ ABC-2 type tran 96.4 0.13 2.7E-06 50.2 15.5 116 198-313 58-175 (253)
10 TIGR01248 drrC daunorubicin re 96.3 0.18 3.9E-06 45.2 14.8 86 215-300 7-92 (152)
11 TIGR03861 phenyl_ABC_PedC alco 96.3 0.16 3.5E-06 49.2 15.4 114 200-313 62-176 (253)
12 COG1668 NatB ABC-type Na+ effl 96.2 0.13 2.8E-06 53.8 15.2 123 200-322 190-326 (407)
13 TIGR00955 3a01204 The Eye Pigm 96.1 0.13 2.8E-06 56.8 15.1 103 215-319 410-515 (617)
14 PF12679 ABC2_membrane_2: ABC- 95.9 0.12 2.7E-06 50.2 12.7 110 211-320 81-201 (277)
15 COG0842 ABC-type multidrug tra 95.6 0.44 9.6E-06 45.8 15.1 113 200-312 90-205 (286)
16 PLN03211 ABC transporter G-25; 95.3 0.28 6.1E-06 54.6 14.0 100 215-316 456-558 (659)
17 TIGR03062 pip_yhgE_Cterm YhgE/ 94.4 0.86 1.9E-05 42.6 13.0 99 200-304 25-124 (208)
18 PF12730 ABC2_membrane_4: ABC- 94.1 2 4.3E-05 39.4 14.6 101 215-316 65-175 (232)
19 PF03379 CcmB: CcmB protein; 93.9 1.6 3.5E-05 41.5 13.6 123 202-325 49-173 (215)
20 PLN03140 ABC transporter G fam 93.4 3.5 7.6E-05 50.1 18.3 96 222-319 1272-1370(1470)
21 PLN03140 ABC transporter G fam 92.9 1.3 2.9E-05 53.7 13.7 94 218-317 595-690 (1470)
22 TIGR00956 3a01205 Pleiotropic 92.4 2.3 5E-05 51.5 15.0 97 219-317 1150-1257(1394)
23 COG1277 NosY ABC-type transpor 91.2 4.7 0.0001 39.3 13.5 110 216-325 79-196 (278)
24 KOG0061|consensus 91.1 4.4 9.5E-05 44.8 14.3 98 216-314 408-507 (613)
25 PF01061 ABC2_membrane: ABC-2 90.9 0.018 3.8E-07 53.3 -4.0 96 219-315 72-169 (210)
26 TIGR01190 ccmB heme exporter p 90.6 8.6 0.00019 36.5 13.8 123 203-325 48-170 (211)
27 PRK15066 inner membrane transp 90.5 10 0.00023 36.6 15.0 96 216-312 80-176 (257)
28 TIGR00956 3a01205 Pleiotropic 87.3 3.6 7.8E-05 49.9 10.9 95 220-316 475-572 (1394)
29 TIGR03733 lanti_perm_MutG lant 85.7 35 0.00077 32.9 15.4 84 221-304 69-159 (248)
30 PF13346 ABC2_membrane_5: ABC- 84.0 34 0.00074 31.3 14.3 85 217-301 53-139 (206)
31 KOG0065|consensus 80.7 21 0.00045 42.5 12.7 106 207-318 506-613 (1391)
32 PF13732 DUF4162: Domain of un 72.5 5.8 0.00013 31.2 4.1 53 373-432 30-83 (84)
33 KOG0065|consensus 57.9 75 0.0016 38.1 10.6 77 242-318 1195-1277(1391)
34 PRK11026 ftsX cell division AB 53.5 2.5E+02 0.0054 28.2 14.9 56 200-256 184-239 (309)
35 COG4591 LolE ABC-type transpor 52.9 2E+02 0.0042 30.3 12.1 49 210-259 284-332 (408)
36 COG4200 Uncharacterized protei 52.2 2.3E+02 0.0049 27.4 12.2 94 221-314 76-176 (239)
37 PF02687 FtsX: FtsX-like perme 52.0 1.3E+02 0.0028 24.4 13.1 52 207-259 9-60 (121)
38 PF11455 DUF3018: Protein of 50.2 5.9 0.00013 30.2 0.2 24 221-244 1-24 (65)
39 KOG0510|consensus 49.2 2.7E+02 0.0058 31.8 12.6 48 200-253 561-608 (929)
40 TIGR03732 lanti_perm_MutE lant 48.9 2.5E+02 0.0054 26.9 11.6 85 217-301 58-150 (241)
41 TIGR01654 bact_immun_7tm bacte 47.4 3.7E+02 0.0081 30.1 14.1 28 230-257 196-223 (679)
42 TIGR00439 ftsX putative protei 45.1 2.1E+02 0.0046 28.7 10.6 57 199-256 183-239 (309)
43 cd06261 TM_PBP2 Transmembrane 35.0 1.7E+02 0.0038 26.1 7.6 53 210-262 85-137 (190)
44 PF11298 DUF3099: Protein of u 34.9 48 0.001 25.9 3.2 33 219-251 8-40 (73)
45 PF04148 Erv26: Transmembrane 30.6 4.8E+02 0.01 24.8 12.3 19 215-233 28-46 (211)
46 PF10754 DUF2569: Protein of u 30.5 3.8E+02 0.0083 23.6 12.5 39 290-328 99-142 (149)
47 COG3559 TnrB3 Putative exporte 30.1 7E+02 0.015 26.6 12.1 48 200-248 352-399 (536)
48 PRK09554 feoB ferrous iron tra 29.2 64 0.0014 36.8 4.3 99 186-302 376-479 (772)
49 COG0833 LysP Amino acid transp 28.0 3.2E+02 0.007 29.7 9.0 16 240-255 129-144 (541)
50 PF00528 BPD_transp_1: Binding 27.0 4.2E+02 0.0092 23.0 11.0 55 207-261 62-116 (185)
51 COG4485 Predicted membrane pro 25.3 5.3E+02 0.011 29.1 10.0 25 209-233 354-378 (858)
52 PF03904 DUF334: Domain of unk 24.3 4.5E+02 0.0099 25.2 8.3 28 239-266 142-169 (230)
53 COG1682 TagG ABC-type polysacc 23.1 7.2E+02 0.016 24.3 13.8 100 211-314 83-183 (263)
54 COG0370 FeoB Fe2+ transport sy 21.8 3.7E+02 0.008 30.0 8.2 30 200-229 383-412 (653)
55 TIGR01188 drrA daunorubicin re 21.3 1.1E+02 0.0024 30.4 3.9 47 382-433 255-301 (302)
56 PF04120 Iron_permease: Low af 21.2 3.6E+02 0.0077 23.7 6.5 62 241-307 5-66 (132)
57 TIGR03434 ADOP Acidobacterial 21.2 1.2E+03 0.026 26.2 15.5 43 214-257 697-739 (803)
58 PF05297 Herpes_LMP1: Herpesvi 21.0 32 0.0007 33.9 0.0 27 239-265 46-72 (381)
No 1
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.7e-64 Score=586.61 Aligned_cols=389 Identities=33% Similarity=0.601 Sum_probs=351.2
Q ss_pred hhHHHHHHHhhcCCCCCchhHHhhcccc-----cCCCCCCCCchhhhhhHHHHHHHHHHHhccccCCceeecCCHHHHHH
Q psy7379 11 RQAIRNEILRSVGNQSQTYNAALNFFDS-----FFSDQNLTSSLNFLNDTQESMQYVVQLLQCIDFNKIVPYNDSATAEN 85 (465)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~l~~f~~~-----~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~f~se~~m~~ 85 (465)
||+|++|+++||+++.|++++|.+||++ +.......+|+++++.++++++.+++.++|+.+||+++++||++|++
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~d~~~~~~~~~~~~~ 536 (2272)
T TIGR01257 457 NPTVKDFINRQLGEEGITAEAVLNFLYNGPREKQADDMTNFDWRDIFNITDRFLRLANQYLECLVLDKFESYDDEVQLTQ 536 (2272)
T ss_pred ChhhhhHHhhcCCCccccHHHHHHHhccCCccccCCCCccccHHHHHHHHHHHHHHHHHHHHHeeccceecCCCHHHHHH
Confidence 7899999999999999999999999987 23456689999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceEEEEEEcCC--CCCCCCCeeEEEEEecCcccC-CcccccCccCCCCCCCCCCCcccccccHHHHHHHHH
Q psy7379 86 DAFLRMDNNTLWALINFTQP--GYDKLKPTLTYSIRMSTALIG-DTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVE 162 (465)
Q Consensus 86 ~~~~~~~~~~~~agIvF~~~--~~~~~p~~~~Y~IR~~~~~~~-t~~l~~~~~~~gpr~~~~~d~~Y~~~GFl~lQ~~id 162 (465)
++.++.+++.+||||+|++. +..++|++++|+||||.+..+ |+++++.+|.+|||+++..|++|+++||++||++||
T Consensus 537 ~~~~l~~~~~~~agI~F~~~~~~~~~~p~~v~y~IR~~~~~~~~t~~~~~~~w~~g~~~~~~~~~~Y~~~GFl~lQ~ai~ 616 (2272)
T TIGR01257 537 RALSLLEENRFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVE 616 (2272)
T ss_pred HHHHHhhcCCeEEEEEeCCCcccccCCCCceEEEEecCccccCcchhhccccccCCCCCCccccccHHHhhHHHHHHHHH
Confidence 99999999999999999753 345789999999999999877 888889999999999888789999999999999999
Q ss_pred HHHHHHhhCCCCCcceeeeecCCCcccchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHH
Q psy7379 163 QSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVH 242 (465)
Q Consensus 163 ~aii~~~~~~~~~~~v~~q~~P~p~~~~d~f~~~~~~~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~y 242 (465)
++|++..++....+++++|+||||||.+|.|+..++.++|++++++|++++..+++.||.|||+|+||+||||||++|+|
T Consensus 617 ~aii~~~~~~~~~~~v~~q~~P~P~y~~d~~l~~~~~~~pl~~~la~~~~~~~lv~~iV~EKE~rlKE~MkiMGL~~~~~ 696 (2272)
T TIGR01257 617 QGITRSQMQAEPPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVI 696 (2272)
T ss_pred HHHHHhhcCCCcccceeeeeCCCCCeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHH
Confidence 99999988765578899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHhhhh
Q psy7379 243 WTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPY 322 (465)
Q Consensus 243 wlswfi~~~~~~li~~~l~~~il~~~~i~~~s~~~~lf~~l~~y~~s~i~f~fliS~fF~~a~~A~~~~~li~~~~~lp~ 322 (465)
|+|||+.+++.+++++++++++++.+.+++++|++++|+++++|++++|+||||+|+||+|+++|+++++++||++++|+
T Consensus 697 w~sWfi~~~~~~~i~~~l~~~il~~~~~~~~s~~~~lfl~~~~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~~lp~ 776 (2272)
T TIGR01257 697 WCTWFLDSFSIMSMSIFLLTIFIMHGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPH 776 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCceeecCChHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888877899999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCCCcccEEEeeecC----------------CCC--CCCCCCCCCCCCchhHHHHHHhhcCCceeccccccE
Q psy7379 323 PFLSNWLNVLPPLVNYFITIPQD----------------HNH--TDHSSNQPSSDPEPDVTQLIRSFLPAANIHKISGSE 384 (465)
Q Consensus 323 ~~~~~~~~~l~~g~gy~lsl~~~----------------~~~--~~~~s~~~~~~~~~~v~~~v~~~ip~a~l~~~~g~e 384 (465)
.++..+++.++.+.+..+|+.+. +.| |++..+.+..++...+...+.+++-|+.++..+++|
T Consensus 777 ~~~~~~~~~~~~~~~~~~sL~sp~af~~g~~~i~~~e~~~~G~~w~n~~~~~~~~d~~s~~~~~~ml~~d~~lY~lL~~Y 856 (2272)
T TIGR01257 777 ILCFAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLAWY 856 (2272)
T ss_pred HHHhhcccccCHHHHHHHHhcCHHHHHHHHHHHHHHhhhCCCcccccccccccCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888888887777763 112 222222222334457888888999999999999999
Q ss_pred EEEEcCCCCCCcchH
Q psy7379 385 VTYVLPQDPASMGAY 399 (465)
Q Consensus 385 l~y~LP~~~~~~~~f 399 (465)
++-++|.++++++++
T Consensus 857 ld~V~PgeyG~~kpw 871 (2272)
T TIGR01257 857 LDQVFPGDYGTPLPW 871 (2272)
T ss_pred HhhcCcCCCCCCCCc
Confidence 999999999975443
No 2
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.43 E-value=2.4e-12 Score=153.53 Aligned_cols=156 Identities=14% Similarity=0.203 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCC-----CcceeeeecCCCcccchhH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7379 154 FAYLQDMVEQSIIQEHTGRES-----TPGIVLQQFPYPCYIEDQF---IKAVSKTFPLFMVLSWVFACSMICKSIVYEKQ 225 (465)
Q Consensus 154 Fl~lQ~~id~aii~~~~~~~~-----~~~v~~q~~P~p~~~~d~f---~~~~~~~~pl~~~l~~~~~~~~~v~~iV~EKe 225 (465)
....-+.+++|+++...++.. .+.+...++|++....... .......+++++++++.+..+.++..+|.||+
T Consensus 1627 ~p~~lN~l~NaiLr~~~~~~~~~~~~~I~v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~asfv~~~V~ER~ 1706 (2272)
T TIGR01257 1627 LVSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQERV 1706 (2272)
T ss_pred HHHHHHHHHHHHHHHhcccccCCccceEEEEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHheeeehHHh
Confidence 445569999999998654321 2334444555443221111 11234466888999999999999999999999
Q ss_pred HhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7379 226 ERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYG---HVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFD 302 (465)
Q Consensus 226 ~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~---~i~~~s~~~~lf~~l~~y~~s~i~f~fliS~fF~ 302 (465)
+|.|+++.++|++..+||+|.|+++++.++++++++++++... .+....+...+++++++||+|.|.++|++|.+|+
T Consensus 1707 skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~SflF~ 1786 (2272)
T TIGR01257 1707 NKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFD 1786 (2272)
T ss_pred hhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999988887766532 2333457778899999999999999999999999
Q ss_pred ccchhhH
Q psy7379 303 QANIAAA 309 (465)
Q Consensus 303 ~a~~A~~ 309 (465)
++..|.+
T Consensus 1787 ~~~~A~~ 1793 (2272)
T TIGR01257 1787 VPSTAYV 1793 (2272)
T ss_pred CchhHHH
Confidence 9988854
No 3
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=99.26 E-value=4.6e-12 Score=126.36 Aligned_cols=207 Identities=19% Similarity=0.325 Sum_probs=40.1
Q ss_pred eeecCCHHHHHHHHHhhcCCCceEEEEEEcCCCCCC---CCCeeEEEEEecCcccCCcccccCccCCCCCCCCCCCcccc
Q psy7379 74 IVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDK---LKPTLTYSIRMSTALIGDTYISDRFYTLDPRSRPLYDLKYI 150 (465)
Q Consensus 74 ~~~f~se~~m~~~~~~~~~~~~~~agIvF~~~~~~~---~p~~~~Y~IR~~~~~~~t~~l~~~~~~~gpr~~~~~d~~Y~ 150 (465)
...++|++++++...+ ++.-+++++++....+ ..+..++++..+...
T Consensus 60 ~~~~~~~~~~~~~~~~----~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 109 (344)
T PF12698_consen 60 VVEYDSEEEAKDALKN----GKIDAIIVIPKNFSQDLLSSGESPNITVYINSSN-------------------------- 109 (344)
T ss_dssp EEECS-HHHHHHHHHH----HT-SEEEEE-TTCCCHCH-TT--ECCEEEESSSS--------------------------
T ss_pred eeeeCCHHHHHHHHHh----CCCcEEEEcCccccccccccCCcceEEEEeeccc--------------------------
Confidence 5699999999987654 2456788887532211 112222333332211
Q ss_pred cccHHHHHHHHHHHHHHHhhCCC--------CCcceeeeecCCCcccchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy7379 151 TFGFAYLQDMVEQSIIQEHTGRE--------STPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVY 222 (465)
Q Consensus 151 ~~GFl~lQ~~id~aii~~~~~~~--------~~~~v~~q~~P~p~~~~d~f~~~~~~~~pl~~~l~~~~~~~~~v~~iV~ 222 (465)
....-.+|+.+++ +.+...+.. ....+..+..|..... ........++++.+.++..+..++..++.
T Consensus 110 ~~~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 184 (344)
T PF12698_consen 110 PHSSQIIQNALSS-LLQQLNASSEGKSAIQSSNSPIPVESIPLSNPS----SSFASYLIPFILFFILLIGFSFIAMSIVE 184 (344)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHCCCGCCCCHHHT--EEEEEEEECCCH----HHCHTT-----------------------
T ss_pred chhhhhhhccccc-cchhhhhhhhhhhhhcccccccccccccccccc----ccccccccccchhHHHHHHHHhhchhhhh
Confidence 0112456777777 655443211 1334555555442222 12234455666666666666667889999
Q ss_pred HHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7379 223 EKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYG-HVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLF 301 (465)
Q Consensus 223 EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~-~i~~~s~~~~lf~~l~~y~~s~i~f~fliS~fF 301 (465)
|||+|+++.|+++|++.+.||++|++..++..++.+++++++ ..+ ..++..++..+++++++|+++.+++++++|++|
T Consensus 185 ek~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~i-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~is~~~ 263 (344)
T PF12698_consen 185 EKESGTRERLLSSGVSPWSYWLSKFLAYFLVSLIQSLIIIII-IFGISGIPFGNFLLLLLLLLLFSLAFISFGFLISSFF 263 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhhhhHhhhcccCCHHHHHHHHHHHHhhHHHHHHHHHHHH-HhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887666654 221 124555888889999999999999999999999
Q ss_pred CccchhhHHHHHHHH
Q psy7379 302 DQANIAAASGGIIYF 316 (465)
Q Consensus 302 ~~a~~A~~~~~li~~ 316 (465)
++.+.|..++.++++
T Consensus 264 ~~~~~~~~~~~~~~~ 278 (344)
T PF12698_consen 264 KNSSTAISVASIIIL 278 (344)
T ss_dssp ---------------
T ss_pred hhHHHHHHHHHHHHH
Confidence 999888776666655
No 4
>KOG0059|consensus
Probab=99.12 E-value=1.3e-09 Score=123.82 Aligned_cols=156 Identities=17% Similarity=0.311 Sum_probs=126.1
Q ss_pred cHHHHHHHHHHHHHHHhhCCCCCcceeeeecCCCcccchhHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy7379 153 GFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKA-VSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEM 231 (465)
Q Consensus 153 GFl~lQ~~id~aii~~~~~~~~~~~v~~q~~P~p~~~~d~f~~~-~~~~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~ 231 (465)
.+..+.+..++++.+...+.. +.++.-|+|......-... .....++++.+.+++.++.++...|.||+.|.|+.
T Consensus 255 ~~~~~~~~~~n~l~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~e~~~~~~~~ 330 (885)
T KOG0059|consen 255 TLPFLLGLGSNALRRALNLSG----ISVLNEPMPLSGAQLSLDLLADLLGALFLLFVFLLLFSVFLLSLILERQQRLRHQ 330 (885)
T ss_pred hHHHhcchHHHHHHHhhcccc----ceeeecCcCccHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Confidence 345568888899988765443 5555445555443322222 45678899999999999999999999999999999
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHH
Q psy7379 232 MRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASG 311 (465)
Q Consensus 232 m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~~i~~~s~~~~lf~~l~~y~~s~i~f~fliS~fF~~a~~A~~~~ 311 (465)
|+++|+++++||+++++++++.+++..+++.+++..++.+...+..++++++++|+.+.+.+.|++|.+|+++..|.+..
T Consensus 331 ~~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~~ 410 (885)
T KOG0059|consen 331 QLIAGLSPSTYWLFALVWDLLLYLLILLILLIFVLIFGFFAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASVIL 410 (885)
T ss_pred HHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCceeeh
Confidence 99999999999999999999999998887777766544566778899999999999999999999999999998886543
Q ss_pred H
Q psy7379 312 G 312 (465)
Q Consensus 312 ~ 312 (465)
.
T Consensus 411 ~ 411 (885)
T KOG0059|consen 411 S 411 (885)
T ss_pred h
Confidence 3
No 5
>KOG0059|consensus
Probab=98.38 E-value=2.9e-07 Score=104.78 Aligned_cols=108 Identities=17% Similarity=0.204 Sum_probs=89.1
Q ss_pred hhhhhcccccc--CCCcccEEEeeecCCCCCCCCCCCCCCCCchhHHHHHHhhcCCceeccccccEEEEEcCCCCCCcch
Q psy7379 321 PYPFLSNWLNV--LPPLVNYFITIPQDHNHTDHSSNQPSSDPEPDVTQLIRSFLPAANIHKISGSEVTYVLPQDPASMGA 398 (465)
Q Consensus 321 p~~~~~~~~~~--l~~g~gy~lsl~~~~~~~~~~s~~~~~~~~~~v~~~v~~~ip~a~l~~~~g~el~y~LP~~~~~~~~ 398 (465)
..+.|.....+ .+||.||.+.+.-.... + ...+...+++..|+|.+.+.+..-+.|++|.+.. ..
T Consensus 774 G~l~ciGs~q~LKsrfG~gy~l~~~~~~~~----------~-~~~v~~~~~~~~p~a~~~~~~~~~~~~~ip~~~~--~~ 840 (885)
T KOG0059|consen 774 GQLRCIGSPQELKSRYGSGYTLTVRIKELP----------E-VSEVEKLLQNRFPGAVLKERHAGLLAFEIPKDEV--VS 840 (885)
T ss_pred CeeEEecChHHHHhhcCCcEEEEEEECCCc----------c-cchHHHHHHHhCCCcchhhhhhceEEEEcccchh--hH
Confidence 34444433333 36999999988776321 1 1489999999999999999999999999998877 57
Q ss_pred HHHHHHHHHhcccccCcccccCCcCchhhhhhcccccceeeec
Q psy7379 399 YVSLFESLSENRAKLGIDSYGISDTSLEEKWGSLQLGRKLWLF 441 (465)
Q Consensus 399 f~~lF~~Le~~~~~lgI~sygiS~TTLEEVFl~~~~~~e~~~~ 441 (465)
++..|..+|..++++++.+|++|+|||||||+++++..|..+.
T Consensus 841 ~~~vF~~le~~~~~~~i~dyslsq~tLe~VFi~~a~~q~~~~~ 883 (885)
T KOG0059|consen 841 LSEVFLALEKAKESFGIEDYSLSQTTLEDVFLILAKTQEDDNS 883 (885)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHHhcccccccc
Confidence 8899999999999999999999999999999999998877554
No 6
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.30 E-value=0.0085 Score=58.07 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHH---HHHH-hhcccccCChHH---HHHHHHHHHH
Q psy7379 216 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS---LLLV-YGHVIQHSNPVI---IFIFLVSFCV 288 (465)
Q Consensus 216 ~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~---~il~-~~~i~~~s~~~~---lf~~l~~y~~ 288 (465)
..+.+++|||+|--|.+....++.+...++-++......++..+... +... .+......++.. ..+..++++.
T Consensus 69 ~~~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 148 (240)
T TIGR03518 69 TMRSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGS 148 (240)
T ss_pred HHHHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999988776554443111 1111 111112223433 4455668888
Q ss_pred HHHHHHHHHHHhcCccchhhHHHHHHHHHHh
Q psy7379 289 ATIAQSFLYSVLFDQANIAAASGGIIYFLLY 319 (465)
Q Consensus 289 s~i~f~fliS~fF~~a~~A~~~~~li~~~~~ 319 (465)
+.++.+.++|++-++...|..++..+++..+
T Consensus 149 ~~~aig~~iSsl~~~q~~a~~~~~~~~~~l~ 179 (240)
T TIGR03518 149 VYTAIGLFASSLTENQIVAFIIAVFLCFLFY 179 (240)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 9999999999997777777666665555443
No 7
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.05 E-value=0.022 Score=54.65 Aligned_cols=113 Identities=11% Similarity=0.061 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccCChHH
Q psy7379 200 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQHSNPVI 278 (465)
Q Consensus 200 ~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~~s~~~~ 278 (465)
..|-.+.++.+.........++.|||++.-+-+.....+.+.++++..+...+..++..+++.++... +. ........
T Consensus 50 l~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~-~~~~~~~~ 128 (236)
T TIGR01247 50 LVPGIVAMTVFNMSFFSGISVIWDRQFGFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAI-LKPSGVIP 128 (236)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHH
Confidence 34444444444444344567888999887777778899999999999999888877766554443321 22 22233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHH
Q psy7379 279 IFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGI 313 (465)
Q Consensus 279 lf~~l~~y~~s~i~f~fliS~fF~~a~~A~~~~~l 313 (465)
.++..++++.+..+++.+++.++++++.+..+..+
T Consensus 129 ~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~ 163 (236)
T TIGR01247 129 TLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSM 163 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44556667788889999999998887766554443
No 8
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=96.77 E-value=0.064 Score=51.37 Aligned_cols=108 Identities=6% Similarity=-0.069 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHH
Q psy7379 200 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVII 279 (465)
Q Consensus 200 ~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~~i~~~s~~~~l 279 (465)
..|...+.............++.|||++.-+.++.+.++.+.+-++..+...+..++..+++.++....++-...++...
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 118 (232)
T TIGR00025 39 IPVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQTLILLVIGFVLGFRFAGGALTA 118 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCchHHH
Confidence 33444445556666777889999999999999999999999999999776666655544333332222222222334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccchh
Q psy7379 280 FIFLVSFCVATIAQSFLYSVLFDQANIA 307 (465)
Q Consensus 280 f~~l~~y~~s~i~f~fliS~fF~~a~~A 307 (465)
++..+++.......+.+++.+....+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 146 (232)
T TIGR00025 119 LTLGAVIIALGTALFAALGLVAGGTLQA 146 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 4555555566666777788887655444
No 9
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=96.42 E-value=0.13 Score=50.20 Aligned_cols=116 Identities=12% Similarity=-0.015 Sum_probs=78.2
Q ss_pred hhhhhHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q psy7379 198 SKTFPLFMVLSWVFAC--SMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSN 275 (465)
Q Consensus 198 ~~~~pl~~~l~~~~~~--~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~~i~~~s~ 275 (465)
....|-++.++.+... ......+..|||+|.-|.+..+-++.+.+-++..+...+..++..+++.++....+..+..+
T Consensus 58 ~f~~pg~l~~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~g~~~~~~ 137 (253)
T TIGR01291 58 AFLAAGMVATSAMTASTFETIYATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATLGYIEWWS 137 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 4455655555444333 22234678899999999999999999999999998877766665544333322222233345
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHH
Q psy7379 276 PVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGI 313 (465)
Q Consensus 276 ~~~lf~~l~~y~~s~i~f~fliS~fF~~a~~A~~~~~l 313 (465)
+..++..+++++++...+++++|.+.++.+.+..+..+
T Consensus 138 ~l~~~~~~ll~~l~~~~lg~~~a~~~~~~~~~~~i~~~ 175 (253)
T TIGR01291 138 LIYILPVIALTGLAFASLSMLVAALAPSYAYFAFYQSL 175 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 55556777788888999999999998777666544443
No 10
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=96.34 E-value=0.18 Score=45.22 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHH
Q psy7379 215 MICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQS 294 (465)
Q Consensus 215 ~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~~i~~~s~~~~lf~~l~~y~~s~i~f~ 294 (465)
.....++.|||++.-|.++.+-++.+.+.++..+...+..++.++++.++....++-...++...+.++.+..+..++++
T Consensus 7 ~~~~~i~~dr~~G~~~~l~~tP~~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~g~~~~~~~~~~~~~~~~~~l~~~~f~ 86 (152)
T TIGR01248 7 FNAIDITIDREIGLLSRLWVLPIHRASALLARIIAETIRAFIGTILILAIALALGFRFRNGVAAALLFLLIPSIFGIAFA 86 (152)
T ss_pred HHHHHHHHHHHhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 33457899999999999999999999999999999988888776555444322222222355545555555555555666
Q ss_pred HHHHHh
Q psy7379 295 FLYSVL 300 (465)
Q Consensus 295 fliS~f 300 (465)
.+.+.+
T Consensus 87 ~l~~~~ 92 (152)
T TIGR01248 87 ALVMAM 92 (152)
T ss_pred HHHHHH
Confidence 555443
No 11
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=96.28 E-value=0.16 Score=49.23 Aligned_cols=114 Identities=14% Similarity=0.067 Sum_probs=74.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccCChHH
Q psy7379 200 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHV-IQHSNPVI 278 (465)
Q Consensus 200 ~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~~i-~~~s~~~~ 278 (465)
..|-++.++.+.....-...++.|||++.-+.++.+-++...+-++..+...+..++..+++.++....++ .+..++..
T Consensus 62 l~pGi~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~g~~~~~~~~l~ 141 (253)
T TIGR03861 62 IVPGLCCMILLFNGMQSSLSMVYDREMGSMRVLLTSPLPRPFLLFCKLLASALISLLQVYAFLAIAALVGVQPPVWGYVS 141 (253)
T ss_pred HHHHHHHHHHHHHHHHhhhHhHHhHhcCHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchhHHH
Confidence 44444444433333334557899999999999999999999999999999888877765544333322122 11122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHH
Q psy7379 279 IFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGI 313 (465)
Q Consensus 279 lf~~l~~y~~s~i~f~fliS~fF~~a~~A~~~~~l 313 (465)
.+..+++..+.....++++|++..+.+.+..+..+
T Consensus 142 ~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~ 176 (253)
T TIGR03861 142 VLPALVLVAFMLGALGLALSNLIRQLENFAGVMNF 176 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44455666777888999999998876665554443
No 12
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.13 Score=53.82 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=76.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH----------h-h
Q psy7379 200 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLV----------Y-G 268 (465)
Q Consensus 200 ~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~----------~-~ 268 (465)
..++.+++.+++....++.+++.|||+|.-|.+..+.++...+-.+-.+...++.++...+..+.+. . +
T Consensus 190 ~~~ll~~~~~~~~~~~~~~sva~EKe~rtlE~LLssPvSr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~ 269 (407)
T COG1668 190 LIFLLFFIPLSYAGQMVADSVAGEKERRTLEVLLSSPVSRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAG 269 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhccCcChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 4445555556666669999999999999999999999999999888888877776665444433330 0 0
Q ss_pred cccccCChHHHHH---HHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHhhhh
Q psy7379 269 HVIQHSNPVIIFI---FLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPY 322 (465)
Q Consensus 269 ~i~~~s~~~~lf~---~l~~y~~s~i~f~fliS~fF~~a~~A~~~~~li~~~~~lp~ 322 (465)
..+......++.. +++.=.+...+.+.+++.++++.+.|+...+-+.++..+|+
T Consensus 270 ~~~~~~~~~~l~~~~~~~l~~~l~~~~l~a~l~~~a~~~k~aq~~~~p~~~~~~~~~ 326 (407)
T COG1668 270 TGLALLPAYLLLFALSLFLLGLLLYAALAAFLGAMAGSIKEAQTLISPLTFLAIIAF 326 (407)
T ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHH
Confidence 0111111211111 12222223334567888899888888876663333334433
No 13
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=96.07 E-value=0.13 Score=56.77 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhhhhhHhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccc-CChHHHHHHHHHHHHHHH
Q psy7379 215 MICKSIVYEKQERLKEMMRVMGL-SNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQH-SNPVIIFIFLVSFCVATI 291 (465)
Q Consensus 215 ~~v~~iV~EKe~~lke~m~imGl-~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~~-s~~~~lf~~l~~y~~s~i 291 (465)
..+..+..||..=.||. ..|+ +.++|++|..+..+...++..++.+++.+. .++-.. ..++..++++++..++..
T Consensus 410 ~~~~~f~~er~v~~rE~--~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~ 487 (617)
T TIGR00955 410 PVINVFTAELPVFLRET--RSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVAT 487 (617)
T ss_pred HHHHHHHHHHHHHHHhh--cCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHH
Confidence 33556677887777765 4566 778999999999988877766666665542 122111 123344445556667778
Q ss_pred HHHHHHHHhcCccchhhHHHHHHHHHHh
Q psy7379 292 AQSFLYSVLFDQANIAAASGGIIYFLLY 319 (465)
Q Consensus 292 ~f~fliS~fF~~a~~A~~~~~li~~~~~ 319 (465)
++++++++++.+...|..++++++.+..
T Consensus 488 s~~~~i~~~~~~~~~a~~~~~~~~~~~~ 515 (617)
T TIGR00955 488 SFGYLISCAFSSTSMALTVGPPFVIPFL 515 (617)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 8999999999999999998886655443
No 14
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=95.92 E-value=0.12 Score=50.19 Aligned_cols=110 Identities=23% Similarity=0.305 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHH---HHHHHHHHH---H-H-hhcccccCChHHHHHH
Q psy7379 211 FACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMI---ITAVLLSLL---L-V-YGHVIQHSNPVIIFIF 282 (465)
Q Consensus 211 ~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~l---i~~~l~~~i---l-~-~~~i~~~s~~~~lf~~ 282 (465)
+....-...+..|||+|-=|.+....++.+.+.++-++...+..+ +...+..++ . . .+.-.+..+.....+.
T Consensus 81 ~~~~l~~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (277)
T PF12679_consen 81 FAIILASDLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLL 160 (277)
T ss_pred HHHHHHHHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 344555678999999999999999999999999998888777632 222111111 1 1 1111122222222222
Q ss_pred HHHHHH---HHHHHHHHHHHhcCccchhhHHHHHHHHHHhh
Q psy7379 283 LVSFCV---ATIAQSFLYSVLFDQANIAAASGGIIYFLLYL 320 (465)
Q Consensus 283 l~~y~~---s~i~f~fliS~fF~~a~~A~~~~~li~~~~~l 320 (465)
.....+ ...+.++++|+++++++.|..++..++++..+
T Consensus 161 ~~~~~~~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~ 201 (277)
T PF12679_consen 161 FVLLLLAVLVFISLGLLISSLFRSSASAILASLGLLFLLFF 201 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH
Confidence 222222 44888999999999999998888877766643
No 15
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=95.59 E-value=0.44 Score=45.85 Aligned_cols=113 Identities=20% Similarity=0.210 Sum_probs=70.0
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcccccCChH
Q psy7379 200 TFPLFMVLSWVFACSMIC-KSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL-VYGHVIQHSNPV 277 (465)
Q Consensus 200 ~~pl~~~l~~~~~~~~~v-~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il-~~~~i~~~s~~~ 277 (465)
..|-++.+..+....... ..+.+||+.+..+.+..+.++...+.++..+...+...+...++.++. ...++....++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~ 169 (286)
T COG0842 90 IVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLL 169 (286)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHhhCcHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHH
Confidence 344444444444433333 344446999999999999999766666555555555444333333332 223345667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCccchhhHHHH
Q psy7379 278 IIFIFLVSFCVATIAQSFLYSV-LFDQANIAAASGG 312 (465)
Q Consensus 278 ~lf~~l~~y~~s~i~f~fliS~-fF~~a~~A~~~~~ 312 (465)
.+.....++.+..++++++++. ..++.+.+...+.
T Consensus 170 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 205 (286)
T COG0842 170 LLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGN 205 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8888888899999999997773 4455566655553
No 16
>PLN03211 ABC transporter G-25; Provisional
Probab=95.32 E-value=0.28 Score=54.58 Aligned_cols=100 Identities=9% Similarity=0.126 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhhhhhHhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc-ccCChHHHHHHHHHHHHHHH
Q psy7379 215 MICKSIVYEKQERLKEMMRVMGL-SNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVI-QHSNPVIIFIFLVSFCVATI 291 (465)
Q Consensus 215 ~~v~~iV~EKe~~lke~m~imGl-~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~-~~s~~~~lf~~l~~y~~s~i 291 (465)
..+.....||.-=.||.. .|+ +..+|++|+.+..+...++..++.+++.+. .++- ....+++.++++++..++..
T Consensus 456 ~~~~~f~~er~v~~rE~~--~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~ 533 (659)
T PLN03211 456 NSVFVFPQERAIFVKERA--SGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQ 533 (659)
T ss_pred HHHHHHHHhhHHHHHhhh--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 445666788988888874 455 789999999999988877777666666542 1221 12234555667778888999
Q ss_pred HHHHHHHHhcCccchhhHHHHHHHH
Q psy7379 292 AQSFLYSVLFDQANIAAASGGIIYF 316 (465)
Q Consensus 292 ~f~fliS~fF~~a~~A~~~~~li~~ 316 (465)
++++++|+++.+...|..+++++..
T Consensus 534 s~g~~i~a~~~~~~~a~~~~~~~~~ 558 (659)
T PLN03211 534 GLGLALGAAIMDAKKASTIVTVTML 558 (659)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999888876533
No 17
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=94.43 E-value=0.86 Score=42.58 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccCChHH
Q psy7379 200 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQHSNPVI 278 (465)
Q Consensus 200 ~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~~s~~~~ 278 (465)
..|.++.++..+.. .....+..+||.|. +....+.+.++++-.+...+..++.++++.++... .++ +..++..
T Consensus 25 ~~p~~~~~~l~~ga-~~~~~~~~~~~~~~----~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~-~~~~~~~ 98 (208)
T TIGR03062 25 LAPYFLSLALFVGA-LVLNMIIPPLSRRA----LPKSARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGL-DPAHPPA 98 (208)
T ss_pred hHHHHHHHHHHHHH-HHHHHHhccccccc----cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccCCHHH
Confidence 55666666644333 33334556666554 35668888899999998888887776665554432 222 2236777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy7379 279 IFIFLVSFCVATIAQSFLYSVLFDQA 304 (465)
Q Consensus 279 lf~~l~~y~~s~i~f~fliS~fF~~a 304 (465)
+++..++.+++..+.+.+++.++++.
T Consensus 99 ~~l~~~l~~~~~~~lg~~l~~~~~~~ 124 (208)
T TIGR03062 99 TFGFAILTSLTFMAIIQFLVALFGNV 124 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 88888889999999999999999754
No 18
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=94.08 E-value=2 Score=39.39 Aligned_cols=101 Identities=11% Similarity=0.185 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc--ccCCh---H----HHHHHHH
Q psy7379 215 MICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVI--QHSNP---V----IIFIFLV 284 (465)
Q Consensus 215 ~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~--~~s~~---~----~lf~~l~ 284 (465)
.....+..|+++|.-+.+...+.+.+.++.+-++...+..++..++..++... +.++ ...+. . ..++..+
T Consensus 65 ~~~~~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (232)
T PF12730_consen 65 LAALLFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFL 144 (232)
T ss_pred HHHHHHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHH
Confidence 34556778999999999999999999999999888887766655443222211 1111 11121 1 1223333
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhHHHHHHHH
Q psy7379 285 SFCVATIAQSFLYSVLFDQANIAAASGGIIYF 316 (465)
Q Consensus 285 ~y~~s~i~f~fliS~fF~~a~~A~~~~~li~~ 316 (465)
+........ +++|.++++.-.+..++.+.++
T Consensus 145 ~~~~~~~~~-~~i~~~~~~~~~~i~~~~~~~~ 175 (232)
T PF12730_consen 145 LLSLFISLL-LFISSLFRNSIVAIIISILLFL 175 (232)
T ss_pred HHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHH
Confidence 344444444 7778888875555444444333
No 19
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=93.85 E-value=1.6 Score=41.52 Aligned_cols=123 Identities=11% Similarity=0.146 Sum_probs=82.3
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccCChHHH
Q psy7379 202 PLFMVLSWVF-ACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQHSNPVII 279 (465)
Q Consensus 202 pl~~~l~~~~-~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~~s~~~~l 279 (465)
|-.+-++..+ ....+-|....|+|++--|.+++.+.+....+++-.+...+...+..++...++.. .+ .+..++..+
T Consensus 49 ~gllWi~~lfa~~l~~~r~f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~-~~~~~~~~~ 127 (215)
T PF03379_consen 49 PGLLWIALLFASLLGLNRSFAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFN-LPISSWPLL 127 (215)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CChhHHHHH
Confidence 3333333333 34445688999999999999999999999999998888888877665544433321 11 123344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHhhhhhhh
Q psy7379 280 FIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFL 325 (465)
Q Consensus 280 f~~l~~y~~s~i~f~fliS~fF~~a~~A~~~~~li~~~~~lp~~~~ 325 (465)
.+.+.+-+.+...-+-+.|.+-.+.+.......++.+=..+|-.+.
T Consensus 128 ~~~l~lgt~gl~~igtl~aal~~~~r~~~~Ll~lL~lPl~iPvli~ 173 (215)
T PF03379_consen 128 LLSLLLGTLGLAAIGTLLAALAAGARGREILLPLLLLPLLIPVLIF 173 (215)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 5555555566666677777777777776677777777777776554
No 20
>PLN03140 ABC transporter G family member; Provisional
Probab=93.38 E-value=3.5 Score=50.14 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=62.8
Q ss_pred HHHHHhhhhhHhhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC--ChHHHHHHHHHHHHHHHHHHHHHH
Q psy7379 222 YEKQERLKEMMRVMG-LSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHS--NPVIIFIFLVSFCVATIAQSFLYS 298 (465)
Q Consensus 222 ~EKe~~lke~m~imG-l~~~~ywlswfi~~~~~~li~~~l~~~il~~~~i~~~s--~~~~lf~~l~~y~~s~i~f~fliS 298 (465)
.||.-=.||.- .| -+.++|.+|..+..+...++..++..++.+...=+..+ .++..++++++..+...+++.+++
T Consensus 1272 ~eR~vf~REr~--~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~ 1349 (1470)
T PLN03140 1272 VERTVFYRERA--AGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTV 1349 (1470)
T ss_pred HHHHHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444334432 33 36688899999998888877777776666531112222 233334444455778888999999
Q ss_pred HhcCccchhhHHHHHHHHHHh
Q psy7379 299 VLFDQANIAAASGGIIYFLLY 319 (465)
Q Consensus 299 ~fF~~a~~A~~~~~li~~~~~ 319 (465)
+++.+...|..++++++.+..
T Consensus 1350 a~~p~~~~A~~~~~~~~~~~~ 1370 (1470)
T PLN03140 1350 SLTPNQQVAAIFAAAFYGLFN 1370 (1470)
T ss_pred HHCCcHHHHHHHHHHHHHHHH
Confidence 999999999998887655433
No 21
>PLN03140 ABC transporter G family member; Provisional
Probab=92.85 E-value=1.3 Score=53.71 Aligned_cols=94 Identities=17% Similarity=0.131 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccccc-CChHHHHHHHHHHHHHHHHHHH
Q psy7379 218 KSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQH-SNPVIIFIFLVSFCVATIAQSF 295 (465)
Q Consensus 218 ~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~~-s~~~~lf~~l~~y~~s~i~f~f 295 (465)
...|-.||+..+- -+.|+|.++..+..+...++.+++..++.+. .++-+. ..++..++++++-..+..++..
T Consensus 595 ~r~vf~ker~~~~------Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~ 668 (1470)
T PLN03140 595 RLPVFYKQRDLLF------HPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFR 668 (1470)
T ss_pred ccchhHHhhhccC------cCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554433 3779999999999998888877777666653 222221 2334444455555666677788
Q ss_pred HHHHhcCccchhhHHHHHHHHH
Q psy7379 296 LYSVLFDQANIAAASGGIIYFL 317 (465)
Q Consensus 296 liS~fF~~a~~A~~~~~li~~~ 317 (465)
++++++.+...|..+++++..+
T Consensus 669 ~i~a~~~~~~~A~~~~~~~~l~ 690 (1470)
T PLN03140 669 LIASVCRTMIIANTGGALVLLL 690 (1470)
T ss_pred HHHHHcCcHHHHHHHHHHHHHH
Confidence 8999999999998888765443
No 22
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=92.42 E-value=2.3 Score=51.49 Aligned_cols=97 Identities=11% Similarity=0.118 Sum_probs=63.9
Q ss_pred HHHHHHHH-hhhhhHhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccC--------ChHHHHHHHHHHH
Q psy7379 219 SIVYEKQE-RLKEMMRVMGL-SNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQHS--------NPVIIFIFLVSFC 287 (465)
Q Consensus 219 ~iV~EKe~-~lke~m~imGl-~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~~s--------~~~~lf~~l~~y~ 287 (465)
..+.||.. -.||. ..|+ +..+|.+|..+..+...++.+++..++.+. .++-... .++..+++++++.
T Consensus 1150 ~f~~~r~~~~~RE~--~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~ 1227 (1394)
T TIGR00956 1150 PFVAQRDLYEVRER--PSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFF 1227 (1394)
T ss_pred hHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHH
Confidence 34455544 25664 3344 456888888888877777666665555432 1221111 1556667777778
Q ss_pred HHHHHHHHHHHHhcCccchhhHHHHHHHHH
Q psy7379 288 VATIAQSFLYSVLFDQANIAAASGGIIYFL 317 (465)
Q Consensus 288 ~s~i~f~fliS~fF~~a~~A~~~~~li~~~ 317 (465)
+...+++.++++++.+...|..++++++.+
T Consensus 1228 ~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~ 1257 (1394)
T TIGR00956 1228 LYFSTLGQMVISFNPNADNAAVLASLLFTM 1257 (1394)
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 888899999999999999999888865544
No 23
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=91.23 E-value=4.7 Score=39.29 Aligned_cols=110 Identities=15% Similarity=0.210 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHH--HH-H-HhhcccccCC----hHHHHHHHHHHH
Q psy7379 216 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS--LL-L-VYGHVIQHSN----PVIIFIFLVSFC 287 (465)
Q Consensus 216 ~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~--~i-l-~~~~i~~~s~----~~~lf~~l~~y~ 287 (465)
-...+..|+|++--+.+-.--++.+..-+|-++..++..++...+.. +. + .........+ ........++|+
T Consensus 79 ~~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (278)
T COG1277 79 GADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYG 158 (278)
T ss_pred ccchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHH
Confidence 35678899999998888888888888888888877777665554443 11 1 1111212222 235666788999
Q ss_pred HHHHHHHHHHHHhcCccchhhHHHHHHHHHHhhhhhhh
Q psy7379 288 VATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFL 325 (465)
Q Consensus 288 ~s~i~f~fliS~fF~~a~~A~~~~~li~~~~~lp~~~~ 325 (465)
....+.++++|+.+++...|...+..+|+...+-+..+
T Consensus 159 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 196 (278)
T COG1277 159 LVLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLI 196 (278)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887777666544433
No 24
>KOG0061|consensus
Probab=91.14 E-value=4.4 Score=44.80 Aligned_cols=98 Identities=9% Similarity=0.160 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccc-cCChHHHHHHHHHHHHHHHHH
Q psy7379 216 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQ-HSNPVIIFIFLVSFCVATIAQ 293 (465)
Q Consensus 216 ~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~-~s~~~~lf~~l~~y~~s~i~f 293 (465)
.+-....||..=.||.-.-+ -+-++|.+|+.+..+...++..++.+.+.+. .+.-+ ...+....+..++..+...++
T Consensus 408 ~i~~f~~e~~~f~rE~~~~~-Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~ 486 (613)
T KOG0061|consen 408 AVPVFPQERPIFLRETSSGL-YRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESL 486 (613)
T ss_pred HHHHhHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666654433 2678999999997777777766666555542 12211 123334444566667777788
Q ss_pred HHHHHHhcCccchhhHHHHHH
Q psy7379 294 SFLYSVLFDQANIAAASGGII 314 (465)
Q Consensus 294 ~fliS~fF~~a~~A~~~~~li 314 (465)
+.+++..+++...|..++.++
T Consensus 487 ~~~i~~~~~~~~~a~~~~~~~ 507 (613)
T KOG0061|consen 487 GLFISAIVPNLSLATSLGPVL 507 (613)
T ss_pred HHHHHHhccchhheeehHHHH
Confidence 899999999998888776654
No 25
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=90.93 E-value=0.018 Score=53.30 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=72.3
Q ss_pred HHHHHHHHhhhhhHhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccCChHHHHHHHHHHHHHHHHHHHH
Q psy7379 219 SIVYEKQERLKEMMRVMGL-SNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQHSNPVIIFIFLVSFCVATIAQSFL 296 (465)
Q Consensus 219 ~iV~EKe~~lke~m~imGl-~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~~s~~~~lf~~l~~y~~s~i~f~fl 296 (465)
....|||++.-+..+..|+ +.+.|.++..+..++..++..+++.++... .++-.. ++...++.+++.++...+.+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~g~~ 150 (210)
T PF01061_consen 72 SISFERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE-SFFLFLLILLLSILCSSGLGLL 150 (210)
T ss_pred hhhhhhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc-cchheecccccccccccccccc
Confidence 3778899999999999999 999999999999888877766555544332 122112 4567777777788888889999
Q ss_pred HHHhcCccchhhHHHHHHH
Q psy7379 297 YSVLFDQANIAAASGGIIY 315 (465)
Q Consensus 297 iS~fF~~a~~A~~~~~li~ 315 (465)
++.++.+.+.|..+..++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~ 169 (210)
T PF01061_consen 151 LAALFPSFRDASAISSLIL 169 (210)
T ss_pred cccchhhhhhhhhhhhhcc
Confidence 9999999888877666443
No 26
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=90.57 E-value=8.6 Score=36.50 Aligned_cols=123 Identities=12% Similarity=0.003 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHH
Q psy7379 203 LFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIF 282 (465)
Q Consensus 203 l~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~~i~~~s~~~~lf~~ 282 (465)
++.+.+..-....+=|....|+|++.-|.+.+.+.+....|++-.+...+...+..++..-++...--.+..+...+.+.
T Consensus 48 ilWva~lfa~ll~l~rlF~~d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~~~~~~l~l~ 127 (211)
T TIGR01190 48 IVWVGALLSSLLSLDRLFRDDFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDVPAWGALALT 127 (211)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 33344444445566788899999999999999999999999988888877766655444333221001122333444444
Q ss_pred HHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHhhhhhhh
Q psy7379 283 LVSFCVATIAQSFLYSVLFDQANIAAASGGIIYFLLYLPYPFL 325 (465)
Q Consensus 283 l~~y~~s~i~f~fliS~fF~~a~~A~~~~~li~~~~~lp~~~~ 325 (465)
+++=..+....+=+.+.+--+.+.....-+++-+=.++|..+.
T Consensus 128 LllGt~~Ls~igtl~aALt~g~r~~~~Ll~lL~lPl~vPvLIf 170 (211)
T TIGR01190 128 LLLGTPALSFLGAIGAALTVGLKRGGLLLSLLVLPLYIPVLIF 170 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHH
Confidence 5555555555566667776666666666667777777776554
No 27
>PRK15066 inner membrane transport permease; Provisional
Probab=90.49 E-value=10 Score=36.64 Aligned_cols=96 Identities=11% Similarity=0.095 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccCChHHHHHHHHHHHHHHHHHH
Q psy7379 216 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLV-YGHVIQHSNPVIIFIFLVSFCVATIAQS 294 (465)
Q Consensus 216 ~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~-~~~i~~~s~~~~lf~~l~~y~~s~i~f~ 294 (465)
....++.||+.|.-|-+.+.-++.+.+-++..+...+..++..+++.++.. ..+.-. .++...+..+++-.......+
T Consensus 80 ~~~~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~-~~~~~~l~~~ll~~~~f~~~g 158 (257)
T PRK15066 80 VASSFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQV-HHWGIVLLTVLLTAILFSLGG 158 (257)
T ss_pred HHHHHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-hHHHHHHHHHHHHHHHHHHHH
Confidence 445678888877777777888999988888888776664444333322221 112211 122222232233233333346
Q ss_pred HHHHHhcCccchhhHHHH
Q psy7379 295 FLYSVLFDQANIAAASGG 312 (465)
Q Consensus 295 fliS~fF~~a~~A~~~~~ 312 (465)
+++|..-.+.+.+..+..
T Consensus 159 l~~a~~~~~~~~~~~i~~ 176 (257)
T PRK15066 159 LINAVFAKSFDDISIIPT 176 (257)
T ss_pred HHHHHHHccHHHHHHHHH
Confidence 777777666555554443
No 28
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=87.35 E-value=3.6 Score=49.92 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=61.8
Q ss_pred HHHHHHHhhhhhHhhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccc-cCChHHHHHHHHHHHHHHHHHHHH
Q psy7379 220 IVYEKQERLKEMMRVMG-LSNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQ-HSNPVIIFIFLVSFCVATIAQSFL 296 (465)
Q Consensus 220 iV~EKe~~lke~m~imG-l~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~-~s~~~~lf~~l~~y~~s~i~f~fl 296 (465)
...||.-=.||. ..| -+.++|.+|..+..+...++.+++..++++. .++-. ...+++.++++++-.++..++..+
T Consensus 475 ~~~eR~i~~re~--~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~ 552 (1394)
T TIGR00956 475 MYEARPIVEKHR--KYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRS 552 (1394)
T ss_pred HHhcCcceeeec--cccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345665444544 334 4778899999999988877777666666542 12211 123344444555556667778889
Q ss_pred HHHhcCccchhhHHHHHHHH
Q psy7379 297 YSVLFDQANIAAASGGIIYF 316 (465)
Q Consensus 297 iS~fF~~a~~A~~~~~li~~ 316 (465)
+|+++.+...|..+++++..
T Consensus 553 i~a~~~~~~~A~~~~~~~~~ 572 (1394)
T TIGR00956 553 IGAVTKTLSEAMTPAAILLL 572 (1394)
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 99999999999887776443
No 29
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=85.66 E-value=35 Score=32.87 Aligned_cols=84 Identities=11% Similarity=0.018 Sum_probs=52.4
Q ss_pred HHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cccccCChHHHHHHHHHHHHHHHHH
Q psy7379 221 VYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYG-------HVIQHSNPVIIFIFLVSFCVATIAQ 293 (465)
Q Consensus 221 V~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~-------~i~~~s~~~~lf~~l~~y~~s~i~f 293 (465)
-.|++.+--..+...-.+...+|+|-++...+..++++++..+++..+ .-++...+....+..++-.+..+.+
T Consensus 69 ~~E~~~~~~k~ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l 148 (248)
T TIGR03733 69 EQEESAGNFKNLLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYII 148 (248)
T ss_pred HHHHHhChHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345544444445555577899999999988777777665443333211 1122223334444556667888999
Q ss_pred HHHHHHhcCcc
Q psy7379 294 SFLYSVLFDQA 304 (465)
Q Consensus 294 ~fliS~fF~~a 304 (465)
++++|..|++.
T Consensus 149 ~l~ls~~~g~~ 159 (248)
T TIGR03733 149 HLFVSFAFGMG 159 (248)
T ss_pred HHHHHHHhCCc
Confidence 99999999863
No 30
>PF13346 ABC2_membrane_5: ABC-2 family transporter protein
Probab=83.98 E-value=34 Score=31.26 Aligned_cols=85 Identities=16% Similarity=0.341 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cCCh-HHHHHHHHHHHHHHHHHH
Q psy7379 217 CKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQ-HSNP-VIIFIFLVSFCVATIAQS 294 (465)
Q Consensus 217 v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~~i~~-~s~~-~~lf~~l~~y~~s~i~f~ 294 (465)
....-.|+++|-..+...+-++...+-.|-++...+..++..++..++......+. ..+. ..+......++.+.+..+
T Consensus 53 ~~~~~~d~~~~~~~~~~slPvsr~~iV~akyl~~~i~~~~~~l~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 132 (206)
T PF13346_consen 53 MSSFSYDEKSKWNKYLNSLPVSRKEIVLAKYLFSLIIILIGSLISLIIAFISNLISGNMSFFEVILIILFGFILALIFYS 132 (206)
T ss_pred HHHHHHHHhcChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 34455688889999999999999999999999999988877665554433222222 2222 233344555555556555
Q ss_pred HHHHHhc
Q psy7379 295 FLYSVLF 301 (465)
Q Consensus 295 fliS~fF 301 (465)
..+-..+
T Consensus 133 i~lp~~~ 139 (206)
T PF13346_consen 133 IFLPLYY 139 (206)
T ss_pred HHHHHHH
Confidence 5554444
No 31
>KOG0065|consensus
Probab=80.70 E-value=21 Score=42.50 Aligned_cols=106 Identities=17% Similarity=0.120 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccc-cCChHHHHHHHH
Q psy7379 207 LSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVY-GHVIQ-HSNPVIIFIFLV 284 (465)
Q Consensus 207 l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~-~~i~~-~s~~~~lf~~l~ 284 (465)
.++.=....+-+..|.+|++.+-= -++|++-++-.|..+..-++.+.+.+++.++ .++=+ -..++..|++++
T Consensus 506 ~~laEi~~~~~~~pv~~Khr~~~f------Y~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf 579 (1391)
T KOG0065|consen 506 NGLAEIALTFQRLPVFYKHRDLSF------YPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLF 579 (1391)
T ss_pred HhHHHHHHHHhhcchHHHhhcccc------cChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 334444456677888888755432 4779998888888888877777666666653 12211 234556666777
Q ss_pred HHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHH
Q psy7379 285 SFCVATIAQSFLYSVLFDQANIAAASGGIIYFLL 318 (465)
Q Consensus 285 ~y~~s~i~f~fliS~fF~~a~~A~~~~~li~~~~ 318 (465)
+...++..+--+++++......|..+|++...+.
T Consensus 580 ~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i 613 (1391)
T KOG0065|consen 580 LCQFCMSGLFRFIASLSRTLSIANLIGGILLLVL 613 (1391)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHH
Confidence 7777777777788888888888888887654433
No 32
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=72.45 E-value=5.8 Score=31.20 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=37.6
Q ss_pred CCceeccccccE-EEEEcCCCCCCcchHHHHHHHHHhcccccCcccccCCcCchhhhhhcc
Q psy7379 373 PAANIHKISGSE-VTYVLPQDPASMGAYVSLFESLSENRAKLGIDSYGISDTSLEEKWGSL 432 (465)
Q Consensus 373 p~a~l~~~~g~e-l~y~LP~~~~~~~~f~~lF~~Le~~~~~lgI~sygiS~TTLEEVFl~~ 432 (465)
|++.-....+.. +...+..+.. -..+++.|.++ .. |.++.....||||||++.
T Consensus 30 ~~v~~v~~~~~~~~~i~l~~~~~----~~~ll~~l~~~--g~-I~~f~~~~PSL~DIFi~~ 83 (84)
T PF13732_consen 30 PGVESVEQDGDGKLRIKLEDEET----ANELLQELIEK--GI-IRSFEEEEPSLEDIFIEV 83 (84)
T ss_pred CCeEEEEEeCCcEEEEEECCccc----HHHHHHHHHhC--CC-eeEEEEcCCCHHHHHHhh
Confidence 665544433333 7777776533 47888888664 33 899999999999999964
No 33
>KOG0065|consensus
Probab=57.91 E-value=75 Score=38.14 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHH
Q psy7379 242 HWTAWFIDSIVVMIITAVLLSLLLVY------GHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIAAASGGIIY 315 (465)
Q Consensus 242 ywlswfi~~~~~~li~~~l~~~il~~------~~i~~~s~~~~lf~~l~~y~~s~i~f~fliS~fF~~a~~A~~~~~li~ 315 (465)
.|.+.++...++=++-.++...+... |-....++++..+++.+++.+-...++.++-++..+..+|+++.+++|
T Consensus 1195 s~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~ 1274 (1391)
T KOG0065|consen 1195 SWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFF 1274 (1391)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 46666666666554444433333221 112233455566666677777788889999999999999999998765
Q ss_pred HHH
Q psy7379 316 FLL 318 (465)
Q Consensus 316 ~~~ 318 (465)
.+.
T Consensus 1275 s~~ 1277 (1391)
T KOG0065|consen 1275 SFW 1277 (1391)
T ss_pred HHH
Confidence 543
No 34
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=53.50 E-value=2.5e+02 Score=28.20 Aligned_cols=56 Identities=9% Similarity=0.314 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHH
Q psy7379 200 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMII 256 (465)
Q Consensus 200 ~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li 256 (465)
.+.+++.++....+.+.++..+.||.+.+ +.||.+|-+++-.-.-++....+..++
T Consensus 184 ~~~~l~~~~~~~~i~ntir~~v~~r~~ei-~im~~~GAt~~~I~~~fl~eg~~~g~~ 239 (309)
T PRK11026 184 MIGVLMVAAVFLVIGNSVRLSIFSRRDTI-NVMKLIGATDGFILRPFLYGGALLGFS 239 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 44555555566667788899999997665 899999999876444444444444333
No 35
>COG4591 LolE ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]
Probab=52.93 E-value=2e+02 Score=30.27 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHH
Q psy7379 210 VFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAV 259 (465)
Q Consensus 210 ~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~ 259 (465)
.+...+....+|.||.+.+ ..||.||+++...-...+....+.-++-++
T Consensus 284 ~fnI~ssL~m~V~ek~~eI-AILrtmGa~~~~I~~iFl~~G~~iG~iG~l 332 (408)
T COG4591 284 AFNIISSLTMLVKEKTREI-AILRAMGASPSHIMRIFLLQGLIIGLIGAL 332 (408)
T ss_pred HHHHHHHHHHHhhhhhhHH-HHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 3444555677888996555 889999999988777776666666555443
No 36
>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.19 E-value=2.3e+02 Score=27.35 Aligned_cols=94 Identities=13% Similarity=0.253 Sum_probs=63.5
Q ss_pred HHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-----Hhhc--ccccCChHHHHHHHHHHHHHHHHH
Q psy7379 221 VYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL-----VYGH--VIQHSNPVIIFIFLVSFCVATIAQ 293 (465)
Q Consensus 221 V~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il-----~~~~--i~~~s~~~~lf~~l~~y~~s~i~f 293 (465)
-.|.+++.=+.+.+.-++.|..++|-+..-+++.++..++..+.. ..+. -+..-....+.+.=++.+...+++
T Consensus 76 ~~Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~~~~~~~~gll~alpl~~l 155 (239)
T COG4200 76 SVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLALPLVAL 155 (239)
T ss_pred HHHhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 457777887888888888888888887777766655543332221 1111 112223334555556677888999
Q ss_pred HHHHHHhcCccchhhHHHHHH
Q psy7379 294 SFLYSVLFDQANIAAASGGII 314 (465)
Q Consensus 294 ~fliS~fF~~a~~A~~~~~li 314 (465)
-+.+|.-|++...|.++|...
T Consensus 156 Q~wLsm~fknf~~al~igI~l 176 (239)
T COG4200 156 QFWLSMRFKNFAVALVIGIFL 176 (239)
T ss_pred HHHHHHHHHhhhHhHHHHHhH
Confidence 999999999999998888654
No 37
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=52.00 E-value=1.3e+02 Score=24.43 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHH
Q psy7379 207 LSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAV 259 (465)
Q Consensus 207 l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~ 259 (465)
+.-........+..+.||.+ --..++.+|.+.+.-....+....+..++..+
T Consensus 9 ~i~~~~~~~~~~~~~~~~~~-~~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~ 60 (121)
T PF02687_consen 9 LIAIFILFNIISSSIRERRR-EIAILRALGASKRQIRKMFLYEALLIALIGIL 60 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCChhhhhHHHHHHHHHHHHHHHH
Confidence 33344444555566666644 44789999999988777776666666555443
No 38
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=50.16 E-value=5.9 Score=30.18 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.8
Q ss_pred HHHHHHhhhhhHhhcCCCchHHHH
Q psy7379 221 VYEKQERLKEMMRVMGLSNGVHWT 244 (465)
Q Consensus 221 V~EKe~~lke~m~imGl~~~~ywl 244 (465)
|.||-.+-|+-|+.+||++...|+
T Consensus 1 v~~RV~khR~~lRa~GLRPVqiWV 24 (65)
T PF11455_consen 1 VRERVRKHRERLRAAGLRPVQIWV 24 (65)
T ss_pred ChHHHHHHHHHHHHcCCCcceeeC
Confidence 568999999999999999999885
No 39
>KOG0510|consensus
Probab=49.24 E-value=2.7e+02 Score=31.83 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHH
Q psy7379 200 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVV 253 (465)
Q Consensus 200 ~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~ 253 (465)
...++++++|++....+.+..++==+++.+..|. +..|+.|||....+
T Consensus 561 ~i~~~~ili~~~i~~~~~~E~iQifqqk~~Y~~~------i~Nimew~iyts~l 608 (929)
T KOG0510|consen 561 LIAFCMILIFTSIILGILRECIQIFQQKRHYFMD------IENIMEWFIYTSAL 608 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHhhhh
Confidence 3456777778888777777777666666666665 66777887765443
No 40
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=48.88 E-value=2.5e+02 Score=26.90 Aligned_cols=85 Identities=13% Similarity=0.233 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhhhh--HhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhccccc--CCh---HHHHHHHHHHHH
Q psy7379 217 CKSIVYEKQERLKEM--MRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL-VYGHVIQH--SNP---VIIFIFLVSFCV 288 (465)
Q Consensus 217 v~~iV~EKe~~lke~--m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il-~~~~i~~~--s~~---~~lf~~l~~y~~ 288 (465)
+...+.++|++-... +.....+....|+|-++.-....++++++..+.. ..+-++.. .+. ....++.++-++
T Consensus 58 i~~~~~~~E~~~~~~k~lls~pvs~~~~~~aK~l~~~~~~~~s~~i~~i~~~~~g~l~~~~~~~~~~~~~~~l~~~i~sl 137 (241)
T TIGR03732 58 ICALLHKKEKKASNYRAILSLPVDLKKVWIAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSL 137 (241)
T ss_pred HHHHHHHHHHhccCcceEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 344555555554444 3444567788999998888777777666554322 22222221 111 223344555566
Q ss_pred HHHHHHHHHHHhc
Q psy7379 289 ATIAQSFLYSVLF 301 (465)
Q Consensus 289 s~i~f~fliS~fF 301 (465)
..+.+++++|.-|
T Consensus 138 ~~i~l~l~ls~~~ 150 (241)
T TIGR03732 138 WQIPLCLFLARKF 150 (241)
T ss_pred HHHHHHHHHHHHH
Confidence 7888889998777
No 41
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=47.42 E-value=3.7e+02 Score=30.13 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=20.3
Q ss_pred hhHhhcCCCchHHHHHHHHHHHHHHHHH
Q psy7379 230 EMMRVMGLSNGVHWTAWFIDSIVVMIIT 257 (465)
Q Consensus 230 e~m~imGl~~~~ywlswfi~~~~~~li~ 257 (465)
-..+++|.+.+.-|.--+.......+++
T Consensus 196 gI~rL~G~s~~~I~~~~l~~~~~~~~l~ 223 (679)
T TIGR01654 196 AIYRLNGFSLRKILFRLFSKNCTYLLIS 223 (679)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999987776665544443
No 42
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=45.13 E-value=2.1e+02 Score=28.71 Aligned_cols=57 Identities=9% Similarity=0.227 Sum_probs=38.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHH
Q psy7379 199 KTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMII 256 (465)
Q Consensus 199 ~~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li 256 (465)
..+.+++.++....+.+.++--+.||.+.+ +.||.+|-+++-.-.-.+....+..++
T Consensus 183 ~~l~~ll~~~~~~~i~Ntirl~i~~Rr~EI-~im~lvGAt~~~I~~pfl~eg~~~gl~ 239 (309)
T TIGR00439 183 WFLSVLMGMAVFLVIGNSIRLQILSRRESI-EVTKLLGATDSFILRPFLYQGMWQSIF 239 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 344555556666667788999999997666 899999999865544444444444443
No 43
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. F
Probab=35.01 E-value=1.7e+02 Score=26.13 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy7379 210 VFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS 262 (465)
Q Consensus 210 ~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~ 262 (465)
............++..+++.|..+.+|.+.+..|.-..+-.....++..+...
T Consensus 85 ~~~~~~~~~~~~~~i~~~~~eaa~~~G~~~~~~~~~v~lp~~~~~i~~~~~~~ 137 (190)
T cd06261 85 APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLA 137 (190)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHcCCCHhHHhHHhhhhhhhHHHHHHHHHH
Confidence 44455666788888999999999999999998888776666665555544443
No 44
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=34.86 E-value=48 Score=25.94 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHH
Q psy7379 219 SIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSI 251 (465)
Q Consensus 219 ~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~ 251 (465)
+.-+|...|.|.|+-+||++--.+-+++++...
T Consensus 8 s~~~d~~~R~r~Y~i~M~~Ri~~fvlA~~~~~~ 40 (73)
T PF11298_consen 8 SLSQDQRRRRRRYLIMMGIRIPCFVLAAVVYRL 40 (73)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345788899999999999999888888877754
No 45
>PF04148 Erv26: Transmembrane adaptor Erv26; InterPro: IPR007277 Erv26 is an integral membrane protein that is packed into COPII vesicles and cycles between the ER and Golgi compartments. It directs pro-alkaline phosphatase into endoplasmic reticulum-derived COPII transport vesicles [].
Probab=30.56 E-value=4.8e+02 Score=24.80 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhhhhHh
Q psy7379 215 MICKSIVYEKQERLKEMMR 233 (465)
Q Consensus 215 ~~v~~iV~EKe~~lke~m~ 233 (465)
.-+..+|+|.-..-|..++
T Consensus 28 yYlsElVEEht~~akril~ 46 (211)
T PF04148_consen 28 YYLSELVEEHTVLAKRILK 46 (211)
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 3456889999988888777
No 46
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=30.50 E-value=3.8e+02 Score=23.64 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcC-----ccchhhHHHHHHHHHHhhhhhhhccc
Q psy7379 290 TIAQSFLYSVLFD-----QANIAAASGGIIYFLLYLPYPFLSNW 328 (465)
Q Consensus 290 ~i~f~fliS~fF~-----~a~~A~~~~~li~~~~~lp~~~~~~~ 328 (465)
...=++..+.++. ........-++++....+||+....+
T Consensus 99 ~~l~~~~~~~~~~~~~~d~~~i~~l~~~li~a~IwipYf~~S~R 142 (149)
T PF10754_consen 99 IALDAFAFSYIFPSPVIDAEAIRELLRSLIAAAIWIPYFLRSKR 142 (149)
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4444455545553 22223445666777888899887643
No 47
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=30.07 E-value=7e+02 Score=26.56 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHH
Q psy7379 200 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFI 248 (465)
Q Consensus 200 ~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi 248 (465)
.+.++=+++-.+.+....|.+=+||+.|. |.+..-+++.+.-..+++.
T Consensus 352 lfsIisil~a~~~V~~vlkl~geEr~nr~-eal~a~~vsR~~vl~syl~ 399 (536)
T COG3559 352 LFSIISILAAAFAVSLVLKLHGEERGNRA-EALLAGAVSRTHVLASYLA 399 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhcchH-HHHHhcchhhhhHHHHHHH
Confidence 34444455556667777788888887766 7778888887644344433
No 48
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=29.22 E-value=64 Score=36.82 Aligned_cols=99 Identities=13% Similarity=0.237 Sum_probs=53.6
Q ss_pred CcccchhHHHHH----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHH
Q psy7379 186 PCYIEDQFIKAV----SKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLL 261 (465)
Q Consensus 186 p~~~~d~f~~~~----~~~~pl~~~l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~ 261 (465)
-++..|.+++.+ ..++|+++-++.-.|..+-.|.+=.|||+.+--+|. .|+.+...+-+..
T Consensus 376 ~Af~mDr~m~~~GL~GksfiPll~GfGCnVPaimatRtl~~~r~R~~til~~------------pfm~C~ArlpV~~--- 440 (772)
T PRK09554 376 AAFVMDRLMQALGLPGKSFVPLIVGFGCNVPSVMGARTLDAPRERLMTIMMA------------PFMSCGARLAIFA--- 440 (772)
T ss_pred HHHHHHHHHHHcCCCCceehhhhhccCcccHHHHHhcccCChHHHHHHHHHh------------ccCCccchHHHHH---
Confidence 344445555444 236688887777888888888888888866643322 2222111111111
Q ss_pred HHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHH-hcC
Q psy7379 262 SLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSV-LFD 302 (465)
Q Consensus 262 ~~il~~~~i~~~s~~~~lf~~l~~y~~s~i~f~fliS~-fF~ 302 (465)
+..+.+|+.....++|.++++-....+.-+++++. +|+
T Consensus 441 ---l~~~aff~~~~~~v~~~~y~~gi~~~~~~~~ll~~~~~~ 479 (772)
T PRK09554 441 ---VFAAAFFGQNGALAVFSLYLLGIVMAILTGLMLKYTIMR 479 (772)
T ss_pred ---HHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 11123455555566666666655556666666654 443
No 49
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=27.99 E-value=3.2e+02 Score=29.71 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHH
Q psy7379 240 GVHWTAWFIDSIVVMI 255 (465)
Q Consensus 240 ~~ywlswfi~~~~~~l 255 (465)
|.||++|.++.-.-+.
T Consensus 129 WnYw~~w~v~~~~El~ 144 (541)
T COG0833 129 WNYWLNWAVTLPLELT 144 (541)
T ss_pred HHHHHHHHHHhhHHHH
Confidence 8999999876544433
No 50
>PF00528 BPD_transp_1: Binding-protein-dependent transport system inner membrane component; InterPro: IPR000515 Bacterial binding protein-dependent transport systems [, ] are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown [, ] that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems [] to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices, however they can be classified into seven families which have been respectively termed: araH, cysTW, fecCD, hisMQ, livHM, malFG and oppBC.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2ONK_H 3PUX_G 3PUY_G 2R6G_G 3PV0_G 3RLF_G 3PUW_G 3PUV_G 3PUZ_G 3TUI_E ....
Probab=26.97 E-value=4.2e+02 Score=23.04 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHH
Q psy7379 207 LSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLL 261 (465)
Q Consensus 207 l~~~~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~ 261 (465)
+..............++..+...|..+.+|.+.|..|.-..+-.....++...+.
T Consensus 62 ~~~~~~~~~~~~~~~~~i~~~~~eaa~~~G~s~~~~~~~v~lP~~~p~i~~~~~~ 116 (185)
T PF00528_consen 62 IFWFPFAIIIIYNALRSIPKEYIEAARILGASRWQIFRKVILPNIKPGILSAFIL 116 (185)
T ss_dssp HHHHHHHHHHHHHHHCCS-THHHHHHHHTTS-HHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCccceeeHHHHHHHHHHHHHH
Confidence 3344455566677777888999999999999999988766666665555544433
No 51
>COG4485 Predicted membrane protein [Function unknown]
Probab=25.31 E-value=5.3e+02 Score=29.14 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHh
Q psy7379 209 WVFACSMICKSIVYEKQERLKEMMR 233 (465)
Q Consensus 209 ~~~~~~~~v~~iV~EKe~~lke~m~ 233 (465)
|.+.++..+.....|--+|++|.++
T Consensus 354 ya~ifs~~i~~~a~e~LsrLsElk~ 378 (858)
T COG4485 354 YAYIFSLLISLLAAETLSRLSELKK 378 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666778888889999866
No 52
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=24.28 E-value=4.5e+02 Score=25.19 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7379 239 NGVHWTAWFIDSIVVMIITAVLLSLLLV 266 (465)
Q Consensus 239 ~~~ywlswfi~~~~~~li~~~l~~~il~ 266 (465)
..--|..|+..++..++.+.++++++..
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt 169 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMT 169 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444888888888877766666555553
No 53
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=23.06 E-value=7.2e+02 Score=24.31 Aligned_cols=100 Identities=8% Similarity=0.102 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHH
Q psy7379 211 FACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVAT 290 (465)
Q Consensus 211 ~~~~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~~~l~~~il~~~~i~~~s~~~~lf~~l~~y~~s~ 290 (465)
-...+.....+.+|+ .+++-+-.+...+-++-.+..+..+++..+++..++...+..+.-++..+...+.+..+..
T Consensus 83 ~~~i~~~~~s~~~n~----~li~k~~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~s~~~l~~~~~l~~l~l~~ 158 (263)
T COG1682 83 SEAISEGAGSVVANA----ALIKKINFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEPSWHWLLLLPALLLLILFS 158 (263)
T ss_pred HHHHHhHHHHhhhhH----HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 333444445555555 4455566777888888877777777666544433333223333334444444555555555
Q ss_pred HHHHHHHHHhcCccc-hhhHHHHHH
Q psy7379 291 IAQSFLYSVLFDQAN-IAAASGGII 314 (465)
Q Consensus 291 i~f~fliS~fF~~a~-~A~~~~~li 314 (465)
+..++++|++..+-+ .....+.+.
T Consensus 159 ~g~~l~~a~l~v~fRD~~~i~~~v~ 183 (263)
T COG1682 159 VGLGLILASLGVRFRDLGQILGVVL 183 (263)
T ss_pred HHHHHHHHhHhhhcccHHHHHHHHH
Confidence 555667776665543 333444433
No 54
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=21.84 E-value=3.7e+02 Score=30.01 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7379 200 TFPLFMVLSWVFACSMICKSIVYEKQERLK 229 (465)
Q Consensus 200 ~~pl~~~l~~~~~~~~~v~~iV~EKe~~lk 229 (465)
+.|+++-++.-.+..+-.|.+=.|||+.+-
T Consensus 383 fIPLilGFGCnVPaImaTRtle~~reRllt 412 (653)
T COG0370 383 FIPLILGFGCNVPAIMATRTLETERERLLT 412 (653)
T ss_pred hhhHHhccCCchHHHHHHHHhcchhHHHHH
Confidence 567777777777777778888888876553
No 55
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=21.28 E-value=1.1e+02 Score=30.39 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=31.8
Q ss_pred ccEEEEEcCCCCCCcchHHHHHHHHHhcccccCcccccCCcCchhhhhhccc
Q psy7379 382 GSEVTYVLPQDPASMGAYVSLFESLSENRAKLGIDSYGISDTSLEEKWGSLQ 433 (465)
Q Consensus 382 g~el~y~LP~~~~~~~~f~~lF~~Le~~~~~lgI~sygiS~TTLEEVFl~~~ 433 (465)
+.++.+.++... .....+++.+.+ ....|.++.+...||||+|+++.
T Consensus 255 ~~~~~~~~~~~~---~~~~~~~~~l~~--~~~~i~~~~~~~~~Le~~f~~~~ 301 (302)
T TIGR01188 255 SDRIKILVPDGD---ETVPEIVEAAIR--NGIRIRSISTERPSLDDVFLKLT 301 (302)
T ss_pred CCeEEEEEcCch---hHHHHHHHHHHH--CCCceEEEEcCCCCHHHHHHHHh
Confidence 344555555322 235667777743 35678899999999999999864
No 56
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=21.20 E-value=3.6e+02 Score=23.66 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCccchh
Q psy7379 241 VHWTAWFIDSIVVMIITAVLLSLLLVYGHVIQHSNPVIIFIFLVSFCVATIAQSFLYSVLFDQANIA 307 (465)
Q Consensus 241 ~ywlswfi~~~~~~li~~~l~~~il~~~~i~~~s~~~~lf~~l~~y~~s~i~f~fliS~fF~~a~~A 307 (465)
+.|++++...-..+++.++++++-+..|.++.+++.+-+.+ ...++|. +|++-.+..+++..
T Consensus 5 s~~is~~~gs~~~f~~~~~~Ii~W~i~Gp~~~~sdtWQLvi----Nt~ttIi-tFlmvfLIQn~q~R 66 (132)
T PF04120_consen 5 SNWISDVAGSPWAFVIAVAVIIVWAISGPVFGFSDTWQLVI----NTATTII-TFLMVFLIQNTQNR 66 (132)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHhccccCcchHHHHH----ccHHHHH-HHHHHHHHHhhhhh
Confidence 45666666655555555444444334467888887655433 2233333 66666666555443
No 57
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=21.17 E-value=1.2e+03 Score=26.24 Aligned_cols=43 Identities=7% Similarity=0.045 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhhhhHhhcCCCchHHHHHHHHHHHHHHHHH
Q psy7379 214 SMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIIT 257 (465)
Q Consensus 214 ~~~v~~iV~EKe~~lke~m~imGl~~~~ywlswfi~~~~~~li~ 257 (465)
..++...+.||.+.+ -.+|.+|.+.+.....-+...++..++.
T Consensus 697 ~~~~~~~v~~R~rEi-ai~kalGas~~~I~~~~l~E~~~l~~ig 739 (803)
T TIGR03434 697 YGVLAYSVAQRTREI-GIRMALGAQRGDVLRLVLRQGLRLAAAG 739 (803)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 444555677764443 6789999999877665555555554443
No 58
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=21.01 E-value=32 Score=33.95 Aligned_cols=27 Identities=15% Similarity=0.253 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7379 239 NGVHWTAWFIDSIVVMIITAVLLSLLL 265 (465)
Q Consensus 239 ~~~ywlswfi~~~~~~li~~~l~~~il 265 (465)
+|.--.+-.+.+|.+.+|++++++.++
T Consensus 46 d~t~~a~~vl~sfAvvliiIIiIImlF 72 (381)
T PF05297_consen 46 DLTQGALTVLYSFAVVLIIIIIIIMLF 72 (381)
T ss_dssp ---------------------------
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445666666665554444333
Done!